Citrus Sinensis ID: 003331
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 829 | 2.2.26 [Sep-21-2011] | |||||||
| F4K1G2 | 1040 | Putative acyl-activating | yes | no | 0.984 | 0.784 | 0.550 | 0.0 | |
| Q4L235 | 1098 | Acyl-CoA synthetase famil | yes | no | 0.887 | 0.670 | 0.274 | 2e-64 | |
| Q5RG49 | 1149 | Acyl-CoA synthetase famil | yes | no | 0.410 | 0.295 | 0.313 | 9e-49 | |
| Q80WC9 | 1100 | Acyl-CoA synthetase famil | yes | no | 0.401 | 0.302 | 0.341 | 3e-43 | |
| Q70LM6 | 5162 | Linear gramicidin synthas | N/A | no | 0.366 | 0.058 | 0.292 | 6e-32 | |
| P09095 | 1088 | Tyrocidine synthase 1 OS= | N/A | no | 0.364 | 0.277 | 0.279 | 5e-31 | |
| Q70LM5 | 7756 | Linear gramicidin synthas | N/A | no | 0.376 | 0.040 | 0.297 | 5e-31 | |
| Q9R9I9 | 2609 | Mycosubtilin synthase sub | no | no | 0.367 | 0.116 | 0.286 | 2e-30 | |
| P0C062 | 1098 | Gramicidin S synthase 1 O | no | no | 0.364 | 0.275 | 0.293 | 3e-30 | |
| P0C064 | 4450 | Gramicidin S synthase 2 O | no | no | 0.358 | 0.066 | 0.285 | 3e-30 |
| >sp|F4K1G2|AEE19_ARATH Putative acyl-activating enzyme 19 OS=Arabidopsis thaliana GN=At5g35930 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/841 (55%), Positives = 587/841 (69%), Gaps = 25/841 (2%)
Query: 1 MRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD 59
+R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P LNLYGSTEVSGD
Sbjct: 205 IRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGD 264
Query: 60 CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFS 119
CTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI GLCLS GY
Sbjct: 265 CTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICVSGLCLSQGYM- 322
Query: 120 ESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG+
Sbjct: 323 HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGK 382
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+ + SI++W+
Sbjct: 383 RMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGG 442
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ + LLQ I+KA
Sbjct: 443 KLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKAV 502
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCN 358
AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 503 CDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGKLR 562
Query: 359 LDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNSTK 402
D+ + KL+ + + ++ HSG + + + KRLK++ K
Sbjct: 563 EDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEK 622
Query: 403 YFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFI 462
+ + +K W+ + C+FSRCNKV E + WSLE+PRN+ +
Sbjct: 623 FSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVSM 679
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGRIE SA
Sbjct: 680 QEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGSA 739
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD QLIWCGSHDH L
Sbjct: 740 MVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTL 799
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K PFHTLWL EL
Sbjct: 800 YALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFEL 859
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
E P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGPC S LPSQVL
Sbjct: 860 EAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQVL 919
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 920 VCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVTVCSSSGR 979
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGCRDDY++C++LE
Sbjct: 980 VHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSLE 1037
Query: 823 T 823
+
Sbjct: 1038 S 1038
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q4L235|ACSF4_HUMAN Acyl-CoA synthetase family member 4 OS=Homo sapiens GN=AASDH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 234/851 (27%), Positives = 376/851 (44%), Gaps = 115/851 (13%)
Query: 18 SSLKLLVLSGEVLP-LSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
+SL++L L GE P L++ I N+YG TEVS T + R+P ST
Sbjct: 310 TSLRVLALGGEAFPSLTVLRSWRGEGNKTQIFNVYGITEVSSWATIY---RIPEKTLNST 366
Query: 77 LK---SVPIGLPISNCDIVLVESD--TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL 131
LK V +G P+ + + +++ T++ G+++ GG
Sbjct: 367 LKCELPVQLGFPLLGTVVEVRDTNGFTIQEGSGQVFLGG--------------------- 405
Query: 132 HNNSIC--NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
N +C + V+ T TGDF ++ G++ FLGRKD IK +G+R+ +E ++
Sbjct: 406 -RNRVCFLDDEVTVPLGTMRATGDFVT-VKDGEIFFLGRKDSQIKRHGKRLNIELVQQVA 463
Query: 190 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
V AV + + L+ F+V K+ IF + LP +P+
Sbjct: 464 EELQQVESCAVTWYNQEK----LILFMVSKDASVKEYIFKE-----LQKYLPSHAVPDEL 514
Query: 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEE--- 306
V +DSLP TS GK+D + L+ I+ + + + DL + ++ + L + E
Sbjct: 515 VLIDSLPFTSHGKIDVSELNKIYLNYINLKSENKLSGKEDLWEKLQYLWKSTLNLPEDLL 574
Query: 307 -VLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIAL------LEKKGLCNL 359
V F GG+S+ + + ++ + P LEI L + L +
Sbjct: 575 RVPDESLFLNSGGDSLKSIRLLS----EIEKLVGTSVPGLLEIILSSSILEIYNHILQTV 630
Query: 360 DVSADANWK-----------LNLEEDKEHQFHSGYSRT-----ENHAVV-----SKRLKV 398
D ++ +N EE H T E +A V S+ L +
Sbjct: 631 VPDEDVTFRKSCATKRKLSDINQEEASGTSLHQKAIMTFTCHNEINAFVVLSRGSQILSL 690
Query: 399 NSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLE---VP 455
NST++ +L H P + S + N + K + + C S E
Sbjct: 691 NSTRFLT-KLGHCSSACPSDSVSQTNIQNLKGLNSPVLIGKSK-DPSCVAKVSEEGKPAI 748
Query: 456 RNKRGFIQELWKVHMESCVDASPLVVL---KDSDIYLFVGSHSHKFICADAKRSSVLWEI 512
++ + W+ CVDASPLVV+ S +++GSHSH+ D V WE
Sbjct: 749 GTQKMELHVRWRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQ 808
Query: 513 KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572
L RIE SA V + +VVGCY G +Y L +G+ YW F T VK +D L
Sbjct: 809 ILGDRIESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGL 868
Query: 573 IWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632
I+ GSHD + YALD +CV+K CGG++F SP ++ + LY A+ G L A V
Sbjct: 869 IYIGSHDQHAYALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLA--VNPA 926
Query: 633 PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC 692
+ +W H P F+S ++++ VDG+++ G +W+ T GPIF+ PC
Sbjct: 927 TGNVIWKHSCGKPLFSS--PQCCSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPC 984
Query: 693 TSFALPSQ--VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750
TS PS+ + S + IY + G+L W++ + A+ + + S
Sbjct: 985 TS---PSEQKIFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPFAFHNYN------GSN 1034
Query: 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVG 810
+ L+ ++ G + IL E+QS Q + EL G++FSSPV++ + +G
Sbjct: 1035 EMLLAAASTDGKVWIL---------ESQSG----QLQSVYELPGEVFSSPVVLESMLIIG 1081
Query: 811 CRDDYIYCIAL 821
CRD+Y+YC+ L
Sbjct: 1082 CRDNYVYCLDL 1092
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Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RG49|ACSF4_DANRE Acyl-CoA synthetase family member 4 OS=Danio rerio GN=aasdh PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 195/383 (50%), Gaps = 43/383 (11%)
Query: 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 521
++ LW+ CVDASP++++ +F+GSHSH+ D R V+WE L R+E S
Sbjct: 790 LRVLWRSDTGRCVDASPMLLVAPDRTTVFIGSHSHRLQALDLSRGEVIWERILGDRLESS 849
Query: 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 581
AA+ + V +GCY ++YFLD GD WTF+T VK P VD L++ GSHD +
Sbjct: 850 AAISSCGGLVAIGCYDRQMYFLDVSCGDTVWTFETGDVVKSSPTVDPKTGLVFAGSHDGH 909
Query: 582 LYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640
+YAL+ C ++ C GG++F SP + LY +S G L ++ + LW +
Sbjct: 910 VYALNPLTKTCTWQHYCGGGAVFSSPCVHLSPRQLYCSSLGGHLHCLNPDS--GKVLWKY 967
Query: 641 ELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTS------ 694
P F+S + ++ V V+GH++ + SG+ +W T GP+F+ PC S
Sbjct: 968 SSSAPFFSSPHCSDSS--VFIGSVNGHIIGISHSGNTLWDFSTDGPVFSSPCISSLTLLT 1025
Query: 695 ------------FALPSQVLIC-SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQ 741
P+ ++ C S +G +Y ++G+LLW++ + ++ ++
Sbjct: 1026 NQPPSTTPSSSVTTSPNHIVTCGSHDGHVYCLNAQNGSLLWQFQTTGKVFSTPFVFSGAL 1085
Query: 742 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV 801
L + L +C++ G + +L G+ K A L L G++FSSPV
Sbjct: 1086 WGLRT------LAAVCSTDGKVWVL------DGETGIQK-------ATLSLPGELFSSPV 1126
Query: 802 MIGGRVFVGCRDDYIYCIALETQ 824
+ G ++ VGCR+DY+YC+ L TQ
Sbjct: 1127 IWGSKLVVGCRNDYVYCLELTTQ 1149
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Danio rerio (taxid: 7955) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: - |
| >sp|Q80WC9|ACSF4_MOUSE Acyl-CoA synthetase family member 4 OS=Mus musculus GN=Aasdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 185/366 (50%), Gaps = 33/366 (9%)
Query: 462 IQELWKVHMESCVDASPLVV---LKDS-DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 517
++E W+ CVDASPL+V ++D +++GSHSH D WE L R
Sbjct: 753 LRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSSGETRWEQLLGDR 812
Query: 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 577
IE SA V + +VVGCY G +Y L +G+ YWTF T VK P VD LI+ GS
Sbjct: 813 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGS 872
Query: 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ + T+
Sbjct: 873 HDQHAYALDIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPAS--GSTV 930
Query: 638 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 696
W P F+S + IC VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 931 WKRSCGKPLFSS---PRCYQQYICIGCVDGSLLCFTHSGEQVWRFAAGGPIFSSPCVS-A 986
Query: 697 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHLQLKLESCLSIDRLVC 755
++ S + IY +E G+L W++ + A+ + H + S D L+
Sbjct: 987 AEQEIFFGSHDCFIYCCSKE-GHLRWKFETTARVYATPFAFSNHPR-------SDDALLA 1038
Query: 756 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDY 815
++ G + +L E++S + + EL G++FSSPV+ + +GCR++Y
Sbjct: 1039 AASTDGKLWVL---------ESRSGELR----SVYELPGEVFSSPVVWESMLVIGCRNNY 1085
Query: 816 IYCIAL 821
IYC+ L
Sbjct: 1086 IYCLDL 1091
|
Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA (By similarity). Putative 2-aminoadipic 6-semialdehyde dehydrogenase, which may be involved in lysine catabolism. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q70LM6|LGRB_BREPA Linear gramicidin synthase subunit B OS=Brevibacillus parabrevis GN=lgrB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 102/349 (29%), Positives = 171/349 (48%), Gaps = 45/349 (12%)
Query: 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
+P S++++ L+GE LP ++ + L + NLYG +E + TY +
Sbjct: 3287 IPPSVRVVNLAGEPLPNTLAQSLYALGHVQKVFNLYGPSEDTTYSTYVQVTK-------- 3338
Query: 76 TLKSVP-IGLPISNCDIVLVESDTVKPDE----GEIYAGGLCLSNGYF-----SESTFMP 125
K+ P IG P++N ++++ ++P GE+Y GG L+ GY + F+P
Sbjct: 3339 GAKTEPTIGRPLANTQAYVLDAK-LQPVPLGLPGELYLGGDGLARGYLKRPKMTAERFLP 3397
Query: 126 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 185
+ + H + + TGD R + G L +LGR D +KI G R+ L E+
Sbjct: 3398 NPF---HPDPDARM---------YSTGDLVRYLPDGQLEYLGRIDHQVKIRGYRIELGEL 3445
Query: 186 EHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245
E LR HP + + VV+ + + LVA+I K+ + L+ SW +KLP M+
Sbjct: 3446 EAVLRSHPQIKEAVVVAKEDKLGEKRLVAYITTKDGECGDRAVLT---SWAKAKLPEFMV 3502
Query: 246 PNRFVFMDSLPMTSSGKVDYASLSAST--SFTISAQHDADETKASDLLQVIRKAFGHALM 303
P+ FV++D++P+T +GK+D L +A + A + L+ I + L
Sbjct: 3503 PSFFVWLDAMPLTPNGKIDRKQLPEPEWGQVASAAGYVAPRNQTEVLVASI---WADVLG 3559
Query: 304 VEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKL 346
+E+V HDNFF +GG+S+ A VA L + +R I+ PT ++L
Sbjct: 3560 IEQVGVHDNFFELGGHSLLATRVASRLRETFAKEVPIRAIFERPTVAEL 3608
|
Activates the 3rd to 6th amino acids (Ala, D-Leu, Ala and D-Val) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 4th (D-Leu) and the 6th (D-Val) amino acids. Brevibacillus parabrevis (taxid: 54914) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|P09095|TYCA_BREPA Tyrocidine synthase 1 OS=Brevibacillus parabrevis GN=tycA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 170/333 (51%), Gaps = 31/333 (9%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+SL++++ +G S +++K + +N YG TE S T ++ PS ++
Sbjct: 281 TSLRIMITAGSA---SSAPLVNKWKDKLRYINAYGPTETSICATIWEA---PS--NQLSV 332
Query: 78 KSVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
+SVPIG PI N I +V D + P EGE+ GG+ L+ GY++ ++V
Sbjct: 333 QSVPIGKPIQNTHIYIVNEDLQLLPTGSEGELCIGGVGLARGYWNRPDLTAEKFV----- 387
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ G + Y RTGD A+ + G + FLGR D +KI G R+ L EIE L H
Sbjct: 388 ---DNPFVPGEKMY-RTGDLAKWLTDGTIEFLGRIDHQVKIRGHRIELGEIESVLLAHEH 443
Query: 195 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
+ + V++ + Q L A+ + +++ T ++ ++ + + KLP M+P+ FV +D
Sbjct: 444 ITEAVVIAREDQHAGQYLCAYYISQQEATPAQ-----LRDYAAQKLPAYMLPSYFVKLDK 498
Query: 255 LPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFF 314
+P+T + K+D +L T + A ++ ++ + + L +E++ DNF+
Sbjct: 499 MPLTPNDKIDRKAL-PEPDLTANQSQAAYHPPRTETESILVSIWQNVLGIEKIGIRDNFY 557
Query: 315 TMGGNSIAAAHV-----AHNLGIDMRLIYNFPT 342
++GG+SI A V ++ L ++ + + N+PT
Sbjct: 558 SLGGDSIQAIQVVARLHSYQLKLETKDLLNYPT 590
|
In the first step of peptide synthesis this enzyme activates phenylalanine and racemizes it to the D-isomer. Brevibacillus parabrevis (taxid: 54914) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|Q70LM5|LGRC_BREPA Linear gramicidin synthase subunit C OS=Brevibacillus parabrevis GN=lgrC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats.
Identities = 106/356 (29%), Positives = 187/356 (52%), Gaps = 44/356 (12%)
Query: 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD 64
L ++ HN ++ L++ G+V+ + + L ++++N YG TE + T+
Sbjct: 711 LFSIMVDHNADYLRGVRQLLVGGDVVSVPHVRKVLAL-GGVTVINGYGPTE---NTTFTC 766
Query: 65 CKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSE 120
C + + E + S PIG PISN + +++ +P GE+Y GG L+ GY +
Sbjct: 767 CYPVTELSE--DITSFPIGRPISNTTVYVLDKHK-QPVPYGAAGELYIGGDGLALGYLNN 823
Query: 121 STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM 180
+ +V+ N GS+ Y RTGD R + +G + F+GR D +KI G R+
Sbjct: 824 AELTAERFVE---NPF---DPQKGSRLY-RTGDLVRYLPNGTIEFIGRIDNQVKIRGFRI 876
Query: 181 ALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240
L E+E L HP+V +T V++ ++ L A++ + K + E+ + +++W+ +KL
Sbjct: 877 ELGEVEAALALHPEVSETVVMARENDRGEKHLTAYVTVA-KDDAPEV--ADLQAWLKTKL 933
Query: 241 PLAMIPNRFVFMDSLPMTSSGKVD--------YASLSASTSFTISAQHDADETKASDLLQ 292
P M+P+ +VF+D++P+T++GK+D + + S + ++T ++ A+E AS Q
Sbjct: 934 PEYMVPSAYVFLDAMPLTANGKIDRRRLPEPEWGNRSETKAYT-EPRNQAEELIASIWSQ 992
Query: 293 VIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL----GID--MRLIYNFPT 342
V L VE+V HDNFF +GG+S+ A V L G++ +R I+ PT
Sbjct: 993 V--------LGVEKVGIHDNFFELGGHSLLATRVISRLREVFGVEQSVRSIFEHPT 1040
|
Activates the 7th to 12th amino acids (Val, D-Val, Trp, D-Leu, Xaa and D-Leu) in linear gramicidin and catalyzes the formation of the peptide bond between them. This enzyme is also responsible for the epimerization of the 8th (D-Val), the 10th (D-Leu) and 12th (D-Leu) amino acids. The 11th (Xaa) amino acid is Trp in linear gramicidin A; Phe in linear gramicidin B and Tyr in linear gramicidin C. Brevibacillus parabrevis (taxid: 54914) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9R9I9|MYCC_BACIU Mycosubtilin synthase subunit C OS=Bacillus subtilis GN=mycC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 97/339 (28%), Positives = 169/339 (49%), Gaps = 34/339 (10%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNIS---ILNLYGSTEVSGDCTYFDCKRLPSILEM 74
+SL+ + SGE L D ++ +S I+NLYG TE + D +YF+C+
Sbjct: 523 ASLRYVFASGEALTPKHVDGFQRIITPVSHAQIINLYGPTEATIDVSYFECE------AD 576
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPD--EGEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
SVPIG PISN + ++++ ++P GE+ G L+ GY + ++VK
Sbjct: 577 KRYNSVPIGKPISNIQLYILQAGYMQPVGVAGELCIAGDGLARGYLNRPELTAEKFVK-- 634
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
S G + Y RTGD AR + G++ +LGR D +KI G R+ E+E L
Sbjct: 635 ------NPFSAGERMY-RTGDLARWLPDGNIEYLGRIDHQVKIRGYRIETGEVEAALFHI 687
Query: 193 PDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
P + ++ V++ + E + L A+ + T+ E ++ +S +LP MIP F+ +
Sbjct: 688 PSIQESIVLAQEINEE-ISLCAYYTANDTLTAGE-----LREHLSRQLPSYMIPAYFIQL 741
Query: 253 DSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDN 312
+P+T +GK+D +L + + A T +L +++ + L +E V D+
Sbjct: 742 KRMPLTLNGKIDRRALPSPRENLTGMDYTAPRT---ELEKILAATWESVLGLERVGVSDH 798
Query: 313 FFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKL 346
FF +GG+SI + V+ L +++ ++ +PT S+L
Sbjct: 799 FFELGGDSIKSIQVSSRLYQAGYKFEIKHLFKYPTISEL 837
|
This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Ser and Asn as part of the synthesis of mycosubtilin. The Ser residue is further epimerized to the D-isomer form. The activation sites for these amino acids consist of individual domains. Bacillus subtilis (taxid: 1423) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|P0C062|GRSA_BREBE Gramicidin S synthase 1 OS=Brevibacillus brevis GN=grsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/337 (29%), Positives = 167/337 (49%), Gaps = 35/337 (10%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
S++ L+ +G S+ ++K ++ +N YG TE + T + + +T
Sbjct: 294 SIQTLITAGSATSPSL---VNKWKEKVTYINAYGPTETTICATTWVATK------ETTGH 344
Query: 79 SVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
SVPIG PI N I +V+ + +K + GE+ GG L+ GY+ ++V
Sbjct: 345 SVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFV------ 398
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
+ G + Y +TGD AR + G++ +LGR D +KI G R+ LEE+E L H +
Sbjct: 399 --DNPFVPGEKLY-KTGDQARWLPDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYI 455
Query: 196 VDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255
+TAV HK E L A V + I L ++ + S +LP MIP+ F+ +D +
Sbjct: 456 SETAVSVHKDHQEQPYLCAIFV-----SEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKM 510
Query: 256 PMTSSGKVDYASL-SASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFF 314
P+TS+GK+D L +F + ++A + + L I + L +E++ DNF+
Sbjct: 511 PLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTI---WQDVLGIEKIGIKDNFY 567
Query: 315 TMGGNSIAAAHVA-----HNLGIDMRLIYNFPTPSKL 346
+GG+SI A VA + L ++ + + +PT +L
Sbjct: 568 ALGGDSIKAIQVAARLHSYQLKLETKDLLKYPTIDQL 604
|
In the first step of peptide synthesis this enzyme activates phenylalanine and racemizes it to the D-isomer. Brevibacillus brevis (taxid: 1393) EC: 5 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 1 |
| >sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 177/343 (51%), Gaps = 46/343 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWD---IISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
S L++L++ + SM D ++S+ I I+N YG TE D +Y++ + +
Sbjct: 2800 SQLQILIVGSD--SCSMEDFKTLVSRFGSTIRIVNSYGVTEACIDSSYYEQ----PLSSL 2853
Query: 75 STLKSVPIGLPISNCDI-VLVESDTVKPDE--GEIYAGGLCLSNGYFSE-----STFMPS 126
+VPIG P +N + ++ + ++P GE+ GG ++ GY + F+P+
Sbjct: 2854 HVTGTVPIGKPYANMKMYIMNQYLQIQPVGVIGELCIGGAGVARGYLNRPDLTAEKFVPN 2913
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+V + +RTGD AR + G++ FLGR D +KI G R+ L EIE
Sbjct: 2914 PFVP--------------GEKLYRTGDLARWMPDGNVEFLGRNDHQVKIRGIRIELGEIE 2959
Query: 187 HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
LR H + + V++ + + L A++V T E+ ++ +++++++ LP AMIP
Sbjct: 2960 AQLRKHDSIKEATVIAREDHMKEKYLCAYMV-----TEGEVNVAELRAYLATDLPAAMIP 3014
Query: 247 NRFVFMDSLPMTSSGKVDYASL-SASTSFTISAQHDADETKASDLLQVIRKAFGHALMVE 305
+ FV ++++P+T++GK+D SL S +I ++ A T L+ I K L ++
Sbjct: 3015 SYFVSLEAMPLTANGKIDKRSLPEPDGSISIGTEYVAPRTMLEGKLEEIWK---DVLGLQ 3071
Query: 306 EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPT 342
V HD+FFT+GG+S+ A V + + +R+++ PT
Sbjct: 3072 RVGIHDDFFTIGGHSLKAMAVISQVHKECQTEVPLRVLFETPT 3114
|
This protein is a multifunctional enzyme, able to activate and polymerize the amino acids Pro, Val, Orn and Leu. Activation sites for these AA consist of individual domains. Brevibacillus brevis (taxid: 1393) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 829 | ||||||
| 255566040 | 1144 | AMP dependent ligase, putative [Ricinus | 0.997 | 0.722 | 0.627 | 0.0 | |
| 224146120 | 1058 | predicted protein [Populus trichocarpa] | 0.986 | 0.773 | 0.615 | 0.0 | |
| 225463846 | 1175 | PREDICTED: acyl-CoA synthetase family me | 0.979 | 0.691 | 0.636 | 0.0 | |
| 449442457 | 1209 | PREDICTED: putative acyl-activating enzy | 0.985 | 0.675 | 0.555 | 0.0 | |
| 356506337 | 1153 | PREDICTED: acyl-CoA synthetase family me | 0.985 | 0.708 | 0.562 | 0.0 | |
| 297805142 | 1120 | hypothetical protein ARALYDRAFT_330218 [ | 0.975 | 0.722 | 0.552 | 0.0 | |
| 357514737 | 1224 | Acetyl-coenzyme A synthetase [Medicago t | 0.990 | 0.670 | 0.525 | 0.0 | |
| 22327387 | 1040 | AMP-dependent synthetase and ligase fami | 0.984 | 0.784 | 0.550 | 0.0 | |
| 20466612 | 1040 | unknown protein [Arabidopsis thaliana] | 0.984 | 0.784 | 0.549 | 0.0 | |
| 8885525 | 1175 | unnamed protein product [Arabidopsis tha | 0.978 | 0.690 | 0.544 | 0.0 |
| >gi|255566040|ref|XP_002524008.1| AMP dependent ligase, putative [Ricinus communis] gi|223536735|gb|EEF38376.1| AMP dependent ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1062 bits (2746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/846 (62%), Positives = 650/846 (76%), Gaps = 19/846 (2%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
+R +LPALQSQ NM + SLKLLVLSGE+ PLS+WD++S L P SILNLYG+TEVSGDC
Sbjct: 301 IRAILPALQSQCNMQIQRSLKLLVLSGEIFPLSLWDVLSDLLPRTSILNLYGTTEVSGDC 360
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSE 120
TYFDCKRLP ILE L SVPIG+PISNCD+VLV ++T D+GEI G C+ +GY S
Sbjct: 361 TYFDCKRLPMILEKEALTSVPIGVPISNCDVVLV-AETATCDQGEICVSGPCVCSGYSSN 419
Query: 121 STFMPSEYVKLHNNSICNCSV-SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQR 179
MPS+ VKLH N ICNC V +CGS Y+RTGDFA+R+Q GDLVFLGR DRTIK+NG R
Sbjct: 420 LAVMPSDSVKLHKNLICNCVVDNCGSHVYYRTGDFAQRLQCGDLVFLGRTDRTIKVNGNR 479
Query: 180 MALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK 239
+ALEE+E+TLRGHP VVD AVV+H+ QGEL++L AF++LKE + S + F SSI+SW+ K
Sbjct: 480 VALEEVENTLRGHPAVVDAAVVAHEGQGELMLLEAFLLLKENEKSGDPFRSSIRSWMVGK 539
Query: 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFG 299
+ AMIPN FVF+ SLP +SSGKVDYA L S T+ Q + SDL+ +++KAF
Sbjct: 540 VSSAMIPNHFVFVKSLPKSSSGKVDYALLQTSALPTLHVQEKFGSSLTSDLMLIVKKAFC 599
Query: 300 HALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCNL 359
ALMVE++ ++FF MGG+SI AA V+++LGIDMRL+Y +PTPSKL+ ALL+KK L
Sbjct: 600 DALMVEDISDDEDFFVMGGSSITAAQVSYDLGIDMRLLYEYPTPSKLQSALLDKKESYKL 659
Query: 360 DVSADANWKLNLE---------------EDKEHQFHSGYSRTENHAVVSKRLKVNSTKYF 404
DV D +WK + + +E + + + + SKR KV+ ++
Sbjct: 660 DVKTDTSWKAKSKACRWNINYASPYLSLKSREWLLKNYHPNNDQNVAASKRFKVDLDRHI 719
Query: 405 KPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRN-KRGFIQ 463
+ DG W + +P+SCSFSRCNKVM+E ++ ++WS+EVPRN K +Q
Sbjct: 720 SSKHVSLSDGYSWP-ALIPISCSFSRCNKVMYERAYSLSNTHQLSWSVEVPRNGKCSSLQ 778
Query: 464 ELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA 523
ELWK+HM SCVDASPLVV KD D++LF+GSH+ KFIC DAK SV WE+KL+GRIECSAA
Sbjct: 779 ELWKIHMVSCVDASPLVVFKDQDVFLFIGSHAQKFICIDAKSGSVQWEVKLQGRIECSAA 838
Query: 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLY 583
++AD+SQVVVGCY+GKIYFLD++ G+I WTFQTCGEVKCQPVVD RQ+IWCGSHD+ LY
Sbjct: 839 IVADYSQVVVGCYEGKIYFLDFVNGNICWTFQTCGEVKCQPVVDVHRQIIWCGSHDNYLY 898
Query: 584 ALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643
ALD+RNY C+YKL CGGS+FGSPAIDEVH LYVASTSGR+TAISVKALPFHTLW ELE
Sbjct: 899 ALDYRNYCCIYKLLCGGSVFGSPAIDEVHGRLYVASTSGRVTAISVKALPFHTLWQRELE 958
Query: 644 VPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703
VP F SL + S N +VICCLVDG+VVALDSSGSI+WRCRTGGP+FAG CTS+ LPSQVLI
Sbjct: 959 VPVFGSLSVCSPNGYVICCLVDGNVVALDSSGSIVWRCRTGGPVFAGACTSYVLPSQVLI 1018
Query: 704 CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763
CSRNGSIYSFE E G+LLWEY+VGDPIT+SAY+DEHLQ S DRLVC+C +SGSI
Sbjct: 1019 CSRNGSIYSFEMEKGDLLWEYNVGDPITSSAYVDEHLQPVSASSPVSDRLVCVCATSGSI 1078
Query: 764 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
H+LR++LDV GK NQS +VQE A+LEL GDIFSSPVMIGGR+FVGCRDDY++CI+LE+
Sbjct: 1079 HLLRISLDVVGKPNQSSKSVVQEIARLELPGDIFSSPVMIGGRIFVGCRDDYVHCISLES 1138
Query: 824 QHLEEE 829
EE
Sbjct: 1139 PSSVEE 1144
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224146120|ref|XP_002325887.1| predicted protein [Populus trichocarpa] gi|222862762|gb|EEF00269.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/848 (61%), Positives = 641/848 (75%), Gaps = 30/848 (3%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
MR +LP LQ QH+M + +SLKLLVLSGEV LS+WD +S L P +ILNLYG+TEVSGDC
Sbjct: 204 MRAILPVLQRQHSMQIQTSLKLLVLSGEVFSLSLWDALSTLLPRTTILNLYGTTEVSGDC 263
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV-ESDTVKPDEGEIYAGGLCLSNGYFS 119
TYFDCKRLP+ILE L S+PIGLPISNCD+ L+ ESDT +EGEIY GGLC+SNGY+S
Sbjct: 264 TYFDCKRLPAILETEALTSIPIGLPISNCDVALICESDT--SNEGEIYVGGLCVSNGYYS 321
Query: 120 ESTFMPSEYVKLHNNSICNCSV-SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
EST H ++ICN SV + G Q Y+RTGDFA+R+Q+GDLVFLGR DRT+KINGQ
Sbjct: 322 ESTVTSFISANPHMDNICNSSVDNWGCQAYYRTGDFAQRLQNGDLVFLGRTDRTVKINGQ 381
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL-SSIKSWVS 237
R+ LEEIE+TLRGHPDV D AV+S + GEL+ L A ++ KE++ S + F+ SSI+ W+
Sbjct: 382 RIVLEEIENTLRGHPDVADAAVISREGPGELLFLDAILLFKEREKSEDFFVRSSIRKWMV 441
Query: 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKA 297
K+PLAM+PNRFV +SLPM+S+GKVDYA L+ S + Q D SDLLQ+I+KA
Sbjct: 442 DKVPLAMVPNRFVITESLPMSSTGKVDYALLARSKFLNLHVQ-DEIGNATSDLLQIIKKA 500
Query: 298 FGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLC 357
F LMVEEV D+FF MGGNSI+AAHV++NLGI+MRL+YNFPTPSKL ALLEKK
Sbjct: 501 FCDGLMVEEVSCDDDFFAMGGNSISAAHVSYNLGINMRLLYNFPTPSKLHAALLEKKESY 560
Query: 358 NLDVSADANWKLNLEEDK----------------------EHQFHSGYSRTENHAVVSKR 395
++V DAN +L ++D + + + ++H V SKR
Sbjct: 561 CMEVRVDANSQLKPKKDSLVSDMAYSPNPTSPVVPGLKSMKQPSKNPHQNNDDHTVASKR 620
Query: 396 LKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVP 455
K + DG P + SS+ M CSFSRCN V+++E R +N +VP
Sbjct: 621 FKEDLDISISSACVKPSDGQPLS-SSISMLCSFSRCNTVIYDENCRSRKSHQINRLAKVP 679
Query: 456 RNKRGF-IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL 514
RN +G + ELWKV+MESCVDASPLVV+K D+YLF+GSHSHKF+C +A S+ WE+KL
Sbjct: 680 RNGKGSSMHELWKVYMESCVDASPLVVVKQQDVYLFIGSHSHKFVCVNALSGSIQWEVKL 739
Query: 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIW 574
EGRIE SAA++ DFSQVVVGCY GKIYFLD+L G I WTFQTCGEVKCQPVVD RQLIW
Sbjct: 740 EGRIESSAAIVGDFSQVVVGCYSGKIYFLDFLDGSICWTFQTCGEVKCQPVVDIHRQLIW 799
Query: 575 CGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634
CGSHDHNLYALD+RN+ C+YKL C GSI+GSPAIDEVH+ LYVASTSG +TAIS+KALPF
Sbjct: 800 CGSHDHNLYALDYRNHCCIYKLSCDGSIYGSPAIDEVHNTLYVASTSGHVTAISIKALPF 859
Query: 635 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTS 694
+TLW HEL+VP F SL + ++ +VICCLVDG++V LD GSIIWRC TGGP+FAG C S
Sbjct: 860 NTLWEHELKVPVFGSLSLCPSSGNVICCLVDGNIVVLDFCGSIIWRCGTGGPVFAGACIS 919
Query: 695 FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLV 754
LPSQVLICSRNG +YSFE E+G+LLWEY+VGDPITASAY+DEHLQL + CL DRLV
Sbjct: 920 CVLPSQVLICSRNGRVYSFEMETGDLLWEYNVGDPITASAYVDEHLQLLSDPCLLSDRLV 979
Query: 755 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDD 814
C+CTSSG +H+L++NLD +GK+NQ ++VQEFA+LEL GDIFSSPVMIGGR+FVGCRDD
Sbjct: 980 CVCTSSGRVHLLQINLDDSGKQNQPGLNIVQEFARLELPGDIFSSPVMIGGRIFVGCRDD 1039
Query: 815 YIYCIALE 822
Y++CI++E
Sbjct: 1040 YVHCISVE 1047
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463846|ref|XP_002265371.1| PREDICTED: acyl-CoA synthetase family member 4 [Vitis vinifera] gi|296088768|emb|CBI38218.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 532/836 (63%), Positives = 644/836 (77%), Gaps = 24/836 (2%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
MRV++PALQS+ NM V +SLK LVLSGE+LPLS+W+ +S L P SILNLYGSTEVSGDC
Sbjct: 347 MRVIIPALQSEENMQVQNSLKFLVLSGEILPLSLWNTLSSLLPQTSILNLYGSTEVSGDC 406
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV-ESDTVKPDEGEIYAGGLCLSNGYFS 119
TYFDC+RLP ILE +L SVPIG+PISNC+++LV ESDT +EGEI GLC++ GYF
Sbjct: 407 TYFDCRRLPRILESDSLSSVPIGIPISNCNVMLVGESDT--SNEGEICVNGLCVNIGYFP 464
Query: 120 ESTFMPSEYVKLHNNSICNCSVSCG-SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
+ MP +Y L + S+CNCS++ SQ YFRTGDFARR+QSGDLVFLGRKDRT+KINGQ
Sbjct: 465 DPNVMPLDYSNLSHGSLCNCSINDNESQLYFRTGDFARRLQSGDLVFLGRKDRTVKINGQ 524
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
R+ALEEIE+ LRGHPDVVD AV+ K QGEL +L AFI+LK S E+ S I W+
Sbjct: 525 RIALEEIENALRGHPDVVDAAVIFRKGQGELELLEAFIILKRTNESDEVLRSCIGCWMVE 584
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADET---KASDLLQVIR 295
KLPL M+PN F F S PM+++GKVDYASL+ S IS H DE K++DLL+VI+
Sbjct: 585 KLPLVMVPNNFFFTKSFPMSATGKVDYASLAGS----ISMAHIQDEIGGIKSNDLLEVIK 640
Query: 296 KAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKG 355
KAF AL VE+V + D+FF MGG+SIAAA+V++NLGI+MRLIYNFP+PSKL++ALL+K+G
Sbjct: 641 KAFCDALSVEKVCNDDDFFMMGGDSIAAAYVSYNLGINMRLIYNFPSPSKLQVALLKKEG 700
Query: 356 LCNLDVSADANWKL-----NLEEDKEHQFHSG--YSRTENHAVVSKRLKVNSTKYFKPEL 408
++DV D L +L K S + + + V SK LKV+S Y +
Sbjct: 701 SSSIDVGIDDIGSLKSDTCDLYSSKPCGTSSKPVFENNDKYPVTSKCLKVDSNTYATSKS 760
Query: 409 HHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKV 468
DG PWN +SVPM CSFSRCNKVM E + + ++C WS+E PRNK GF++ELWKV
Sbjct: 761 VIPCDGCPWNSNSVPMLCSFSRCNKVMCEVESKMKNICHTTWSIEFPRNKSGFMRELWKV 820
Query: 469 HMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF 528
HMESCVDAS +VV KD DIYL +GSHSHKF+C +AK + W I+LEGRIECSAA+L DF
Sbjct: 821 HMESCVDASAIVVFKDWDIYLLIGSHSHKFVCVNAKSGFIRWGIELEGRIECSAAILDDF 880
Query: 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 588
SQVVVGCY G IYFLD+ G+I WTFQT GEVK QPV+D R L+WCGSHDH LYAL++R
Sbjct: 881 SQVVVGCYSGIIYFLDFSNGNICWTFQTRGEVKSQPVIDKRRNLVWCGSHDHYLYALNYR 940
Query: 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA 648
N+ CVYKLPCGGSIFGSPAIDE D+LYVASTSGR+TAIS+K PF TLWLHEL VP F
Sbjct: 941 NHCCVYKLPCGGSIFGSPAIDEARDILYVASTSGRVTAISLKVQPFCTLWLHELNVPVFG 1000
Query: 649 SLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 708
SL ++S N +VICCLVDGHV+A DSSGSI+W+ +TGGPIFAG C S ALPSQ LICSRNG
Sbjct: 1001 SLSVSS-NGNVICCLVDGHVLAFDSSGSIVWKGKTGGPIFAGACISHALPSQALICSRNG 1059
Query: 709 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768
S+YSFE E G+LLWE SVGDPITA+AY+DE+L+L +S LS DRLVCIC SSGSIH+L++
Sbjct: 1060 SVYSFELEGGDLLWECSVGDPITAAAYVDENLKLVSDSSLSSDRLVCICASSGSIHLLKI 1119
Query: 769 NLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 824
+ D TG+ H EFA+LELQG+IFSSPVMIGGR+FVGCRDDY++CIA+E Q
Sbjct: 1120 SWDTTGRV-----HRPTEFARLELQGEIFSSPVMIGGRIFVGCRDDYVHCIAVEAQ 1170
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442457|ref|XP_004138998.1| PREDICTED: putative acyl-activating enzyme 19-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/866 (55%), Positives = 623/866 (71%), Gaps = 49/866 (5%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE----- 55
MR +LPALQ V SL+LL+LSGE LP+ +WD + KL P +ILNLYGSTE
Sbjct: 342 MRTLLPALQ--RFCGVKCSLRLLILSGETLPILLWDALVKLLPETTILNLYGSTEYLNFL 399
Query: 56 ---VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLC 112
VSGDCTYFDCK++P ILE +K+VPIG+PIS+CD+V+V D + GE+ GG C
Sbjct: 400 NKKVSGDCTYFDCKKMPMILETDAIKTVPIGVPISHCDVVVV-GDNDALNLGELCVGGPC 458
Query: 113 LSNGYFSESTFMPSEYVKLHNNSICNCS--VSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170
+ +GY+S+S F+P + +K + I S V+C SQ Y RTGDF ++++SGDLVFLGRKD
Sbjct: 459 VCSGYYSDSVFLPLDGIKFSQDFIHEGSFNVTC-SQIYIRTGDFVQQLRSGDLVFLGRKD 517
Query: 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLS 230
R IK+NGQR++LEEIE LR HPDVVD AVVS K EL LVAF+VLK+ + SE+F S
Sbjct: 518 RIIKVNGQRISLEEIEDALREHPDVVDAAVVSRKSDWELEYLVAFLVLKDNE-KSEVFRS 576
Query: 231 SIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDL 290
+++SW+ K+PLAMIPN F F DS+PMT+SGKVDY L+ S DET A++
Sbjct: 577 TVRSWMVEKVPLAMIPNSFFFTDSIPMTTSGKVDYEILTHSRPLWEQVHESIDETWANEF 636
Query: 291 LQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIAL 350
+Q+I+KAF ALMVEE+ D+FFTMGGNSI AAHV+H LGIDMR +Y++P+P+KL +
Sbjct: 637 IQIIKKAFSDALMVEEISSGDDFFTMGGNSITAAHVSHRLGIDMRWLYHYPSPAKLLTVI 696
Query: 351 LEKKGLCNLDVSADANWKLNLEED---------------------------KEHQFHSGY 383
LEKKGL + ++ DA+ + NL+ D K+ Q + +
Sbjct: 697 LEKKGLDIIRINEDADSRRNLKTDRWNKYSLDDSEFLNHFDLKEGGSSGKRKQVQPNGDF 756
Query: 384 SRT----ENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEK 439
SR N++++SK K S E G W+ +SC+FSRCNKV++E K
Sbjct: 757 SRAVVPRNNNSLLSKHYKAVSDCSINLENISQVGGHLWHSPLTSVSCAFSRCNKVVYERK 816
Query: 440 IRGNDLCGVNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFI 499
G++ ++ PR + G +++LW+VHMESCVDASPL+V K +IYLF+GSHSHKF+
Sbjct: 817 YIGDNKRAGTLLVKSPRGENGSMKKLWQVHMESCVDASPLLVFKHPNIYLFIGSHSHKFV 876
Query: 500 CADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559
C DAK +S+ WEI+LEGRIECSAA++ DFSQVVVGCYKG IYFL++ TG I WTFQT GE
Sbjct: 877 CVDAKNASLRWEIRLEGRIECSAAIVGDFSQVVVGCYKGNIYFLEFSTGVILWTFQTYGE 936
Query: 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 619
VK QPVVD R LIWCGS+DHNLYALD+ + CVYKLPCGGS++GSPAID V LYVAS
Sbjct: 937 VKSQPVVDPDRNLIWCGSYDHNLYALDYVRHSCVYKLPCGGSLYGSPAIDGVQHRLYVAS 996
Query: 620 TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH--VICCLVDGHVVALDSSGSI 677
T GR++A+ +K PF++LW ++LE P F SL I R+ VICCLVDGHVVALDSSGS+
Sbjct: 997 TGGRISALLIKDFPFNSLWHYDLEAPVFGSLAIDPVTRNGTVICCLVDGHVVALDSSGSV 1056
Query: 678 IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 737
W+ +TGGPIFAGPC S ++PSQVLICSRNGSIYSFE ESG+L+WEY++G+PITASA +D
Sbjct: 1057 SWKSKTGGPIFAGPCISTSIPSQVLICSRNGSIYSFELESGDLVWEYNIGNPITASACVD 1116
Query: 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF 797
EHLQL E+ +S DRL+C+C+S+GSIH+LRV L+ T +E S++ V+EF +L+L+GDIF
Sbjct: 1117 EHLQLVPETSISSDRLICVCSSAGSIHLLRVKLNAT-QEGNSQNTNVEEFGRLDLEGDIF 1175
Query: 798 SSPVMIGGRVFVGCRDDYIYCIALET 823
SS VMIGG VFVGCRDDY++C+ ++
Sbjct: 1176 SSSVMIGGLVFVGCRDDYVHCVGIDN 1201
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506337|ref|XP_003521941.1| PREDICTED: acyl-CoA synthetase family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 932 bits (2409), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/839 (56%), Positives = 602/839 (71%), Gaps = 22/839 (2%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
MR +LP LQ+ NM V +SLKLLVLSGE PL++W+++S + P SILNLYGSTEVSGDC
Sbjct: 325 MRTILPGLQTHANMLVENSLKLLVLSGETFPLTLWEMLSTILPKTSILNLYGSTEVSGDC 384
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSE 120
TYFDCKR+P IL+ L SVPIGLPI+NCD++++ ++ +EGE+Y GG C+ Y++E
Sbjct: 385 TYFDCKRMPLILKEEKLFSVPIGLPITNCDVMMLLNENGASNEGELYVGGSCIFRDYYNE 444
Query: 121 -STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQR 179
+ M + KL S +C Q YFRTGD +++ SGD VFLGRKDR IKINGQR
Sbjct: 445 PNNIMSDAFAKLPR------SYACQGQLYFRTGDLVKQLPSGDFVFLGRKDRIIKINGQR 498
Query: 180 MALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK 239
+ALEE+E LR HP + D AVV ++ ELV+L AFI+LK+K+ S E+ + +I+SW+ +K
Sbjct: 499 IALEEVEELLREHPYINDAAVVCRNNEAELVLLEAFIILKKKERSGELLIPAIRSWMINK 558
Query: 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFG 299
LP ++PNRF FM+S P++ SGKV+Y L S T + + S+LLQ+I+KAF
Sbjct: 559 LPSIVLPNRFFFMESFPVSPSGKVNYELLVGSALLTKNVKDKVSNIDCSNLLQLIKKAFH 618
Query: 300 HALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCNL 359
ALMVE+V + D+FF MGGNS++AAHVA+ LGIDM+ +Y +PTP KL +ALL+KKG C+L
Sbjct: 619 DALMVEKVCNDDDFFMMGGNSLSAAHVAYGLGIDMKFLYYYPTPFKLCMALLQKKGSCSL 678
Query: 360 DVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGL---- 415
D ++N + H + EN + R+ + + K GL
Sbjct: 679 HNRLDCCRQINTDRQDNH---ISMNHAENSRPLESRMILKDNDHDSFPSKRLKRGLIDVT 735
Query: 416 PWNLSSVP------MSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVH 469
W S P +S SFSRCNKV+++ K D WS VPR RG + WKV+
Sbjct: 736 SWGDESFPWYSPSLLSFSFSRCNKVLYKGKQAVIDTNQTTWSANVPRGSRGHMNNFWKVY 795
Query: 470 MESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS 529
MESCVDASP++V K +DIYLF+GSHSHKF+C +A+ SV WEIKL+GRIEC+AA+++DFS
Sbjct: 796 MESCVDASPILVFKGTDIYLFIGSHSHKFLCINARSGSVQWEIKLKGRIECTAAIVSDFS 855
Query: 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589
QVVVGCY GKI+FLD+L G I W FQT GEVK QPVVD RQLIWCGSHDHNLYALD++
Sbjct: 856 QVVVGCYMGKIHFLDFLNGRICWIFQTSGEVKAQPVVDTCRQLIWCGSHDHNLYALDYKK 915
Query: 590 YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 649
+ CVYKL CGGSI+GSPAIDEV +LYVAST GR+TAIS+ A PF LWLHELEVP F S
Sbjct: 916 HCCVYKLSCGGSIYGSPAIDEVRGLLYVASTGGRITAISISASPFTILWLHELEVPVFGS 975
Query: 650 LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGS 709
L + + N VICCLVDGHV+ALD +GSI+W+ T GPIFAGPC LP +VL+CSR+G
Sbjct: 976 LAV-AHNGTVICCLVDGHVLALDPNGSIVWKKTTDGPIFAGPCIPSVLPHEVLVCSRSGG 1034
Query: 710 IYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769
+YSF+ E G+LLWEY+VGDPITASAY+DEHLQL+ ++ S DRLVCIC+SSG IH+LRVN
Sbjct: 1035 VYSFKLEKGDLLWEYNVGDPITASAYVDEHLQLESDASHSSDRLVCICSSSGGIHLLRVN 1094
Query: 770 LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828
++ + NQ + VQEFAKL L GD+FSSP+MIGGR+FVGCRDDY++CIALE E
Sbjct: 1095 MNHSEDANQQRRD-VQEFAKLNLPGDVFSSPLMIGGRIFVGCRDDYLHCIALEIPKQHE 1152
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805142|ref|XP_002870455.1| hypothetical protein ARALYDRAFT_330218 [Arabidopsis lyrata subsp. lyrata] gi|297316291|gb|EFH46714.1| hypothetical protein ARALYDRAFT_330218 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/841 (55%), Positives = 590/841 (70%), Gaps = 32/841 (3%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
+R +LP LQ + + + SSLKL+VLSGE P+S+WD + L P LNLYGSTEVSGDC
Sbjct: 292 IRAILPTLQHRGHNKLQSSLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGDC 351
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSE 120
TYFDC LP IL+ + SVPIG PISNC ++L D KP EGEI GGLC+S GY
Sbjct: 352 TYFDCSGLPRILKTEEIGSVPIGKPISNCKVLLF-GDEDKPYEGEICVGGLCISQGYM-H 409
Query: 121 STFMPSEYVKLHNN-SICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
S+ YVKLHNN S+CN + CGS+ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG+
Sbjct: 410 SSIESQGYVKLHNNKSLCNHLTNDCGSELYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGK 469
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
RMALEEIE TL +PDV + V+ + + EL L AF+VL ++ S + + SI++W+S
Sbjct: 470 RMALEEIETTLELNPDVAEAVVLLSRDEKELASLKAFLVLNKESNSGDGIIFSIRNWMSE 529
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
KLP MIPN F+ ++SLP+T+SGKV+Y +L+ AQ + LLQ I+KA
Sbjct: 530 KLPTVMIPNHFLLVESLPLTASGKVNYEALARLKCPKTLAQDMMHSNGTNSLLQTIKKAV 589
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCN 358
AL+V+EVL D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 590 CDALVVKEVLDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLICLSEKEGKLR 649
Query: 359 LDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNSTK 402
D + KL+ + + ++ HSG + + + + KRLK++S K
Sbjct: 650 EDTQHNTTQKLDHKTESQNGNGLVSRTVPRHSGVTSSPTPSGMQCEKNNSPKRLKIDS-K 708
Query: 403 YFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFI 462
F P++ K W+ C+FSRCNKV + NWS+E+PRN+ +
Sbjct: 709 IFSPKMKEKKS---WDSGFSQTQCAFSRCNKVYSPNSCSNEEANRENWSVEIPRNQMVSM 765
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGR+E SA
Sbjct: 766 QEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSIYWETTLEGRVEGSA 825
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V+ DFSQVVVGCYKGK+YFLD+ TG + WTFQ CGE+KCQPVVDA QLIWCGSHDH L
Sbjct: 826 MVVGDFSQVVVGCYKGKLYFLDFSTGSLCWTFQACGEIKCQPVVDASSQLIWCGSHDHTL 885
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD+R+ RCVYKL CGGSIF SP IDE H +LYVASTSGR+ A+S++ LPFHTLWL +L
Sbjct: 886 YALDYRSQRCVYKLQCGGSIFASPLIDEGHSLLYVASTSGRVIAVSIEDLPFHTLWLLDL 945
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
E P F SLCIT +R VDG V+A+ +SG+IIWR RTGGPIFAGPC S LPSQVL
Sbjct: 946 EAPIFGSLCITPTSRS-----VDGQVIAMSTSGTIIWRYRTGGPIFAGPCMSHVLPSQVL 1000
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+C RNGS+YS E ESG L+WEY++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 1001 VCCRNGSVYSLEPESGCLVWEYNIGDPITASAYIDENLHFESHQLLASDRLVTVCSSSGR 1060
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+H+LRV T S D V E A+LELQ DIFSSPVMIGGR+FVGCRDDY++C++LE
Sbjct: 1061 VHVLRVR---TNHSRDSLDLKVGEIARLELQADIFSSPVMIGGRIFVGCRDDYVHCLSLE 1117
Query: 823 T 823
+
Sbjct: 1118 S 1118
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357514737|ref|XP_003627657.1| Acetyl-coenzyme A synthetase [Medicago truncatula] gi|355521679|gb|AET02133.1| Acetyl-coenzyme A synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/873 (52%), Positives = 602/873 (68%), Gaps = 52/873 (5%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE----- 55
+R +LP LQ+ ++ + SSLKLLVLSGE P ++W+ +S + P SILNLYGSTE
Sbjct: 354 IRTILPVLQTHTDLRIESSLKLLVLSGETFPYTLWETLSTILPKTSILNLYGSTEFLSYC 413
Query: 56 --------------------------VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 89
VSGDCTYFDCKR+P +L+ L SVPIGLPI+NC
Sbjct: 414 TLLFFSIIIIGYSSLTILFPIHFLTKVSGDCTYFDCKRIPLVLKEEMLTSVPIGLPITNC 473
Query: 90 DIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSC-GSQTY 148
++VL+ + P+EGE+Y GG C+ GY+ ES M +VKL N C SV S+ Y
Sbjct: 474 NVVLI-GENGAPNEGELYVGGSCIFRGYYDESDIMSEGFVKLPQNYGCENSVDVFQSELY 532
Query: 149 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE 208
FRTGD +++ SGD +FLGRKDR +K++GQR++LEE+E+ LR HP++ D AVV Q E
Sbjct: 533 FRTGDLVKQLPSGDFIFLGRKDRIVKVHGQRISLEEVENLLREHPNINDAAVVCRNLQAE 592
Query: 209 LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
LV + AFI+LK+K+ E+ + +I+SW+ +KLP +PNRF+F +S P++SSGKV+Y L
Sbjct: 593 LVFIEAFIILKDKQQLGELLVPAIRSWMINKLPSVWLPNRFIFTESFPISSSGKVNYELL 652
Query: 269 SASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 328
+S T S + S+LLQ+I+K F AL+VE++ + D+FF MGGNS++AAHVAH
Sbjct: 653 VSSALLTKSVKDKVGNISCSNLLQLIKKIFHDALLVEKLCNDDDFFIMGGNSLSAAHVAH 712
Query: 329 NLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRT-- 386
NLGID+R +Y +P+P KL +ALL K+G C+L D +L+ + + + F S + +
Sbjct: 713 NLGIDLRFLYYYPSPFKLCMALLHKRGSCSLHNRLDNCLQLD-TDIQNNDFSSNLTESSF 771
Query: 387 --ENHAVVS---------KRLKVNSTKYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVM 435
E+ + KRLK ST + PW+ ++ S SFSRCNKV+
Sbjct: 772 PLESRMIPKDKVDVLFPFKRLKRGSTDVVT---SGGDEPFPWHSLAIFSSSSFSRCNKVL 828
Query: 436 HEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHS 495
++ + D WS VPR RG ++ WKV+MESCVDASP+VV K SD+YLF+GSHS
Sbjct: 829 YKGQTSVMDTHQTTWSSNVPRGSRGHMKSFWKVYMESCVDASPMVVSKGSDLYLFIGSHS 888
Query: 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555
HKF+C + + S+ WEIKLEGRIEC+AA+++DFSQVVVGCY GKIYFLD+ G I W FQ
Sbjct: 889 HKFLCINVRSGSMQWEIKLEGRIECTAAIVSDFSQVVVGCYMGKIYFLDFWNGHICWIFQ 948
Query: 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615
T GEVK QP+VD RQLIWCGS+DH LYALD++N+ CVYKL CGGSI+GSPAIDEV +L
Sbjct: 949 TSGEVKSQPIVDTCRQLIWCGSYDHTLYALDYKNHCCVYKLSCGGSIYGSPAIDEVRGLL 1008
Query: 616 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSG 675
YVAST GR+TA+S+ PF LWL ELEVP F SL +T N VICCLVDGHV+ALD +G
Sbjct: 1009 YVASTGGRITAVSISGSPFSILWLLELEVPVFGSLAVT-KNGTVICCLVDGHVLALDPNG 1067
Query: 676 SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 735
SI+W+ TGGPIFAGPC P +VL+C RNGS+YSF+ E G+L+WEY+VGDPITASAY
Sbjct: 1068 SIVWKKTTGGPIFAGPCIPSVNPHEVLVCCRNGSVYSFKLEKGDLIWEYNVGDPITASAY 1127
Query: 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795
+DEHLQL+ ++ + DRL+C C+SSG IHILRVN + + N K V+EFA+L+L GD
Sbjct: 1128 VDEHLQLEADASHTSDRLICACSSSGGIHILRVNTNFSENTNHLKSE-VEEFARLKLPGD 1186
Query: 796 IFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828
IFSSP+MIGGR+FVGCRDDY+YC+ALE E
Sbjct: 1187 IFSSPLMIGGRIFVGCRDDYLYCVALEIPKQHE 1219
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22327387|ref|NP_198442.2| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] gi|378548266|sp|F4K1G2.1|AEE19_ARATH RecName: Full=Putative acyl-activating enzyme 19 gi|332006646|gb|AED94029.1| AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/841 (55%), Positives = 587/841 (69%), Gaps = 25/841 (2%)
Query: 1 MRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD 59
+R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P LNLYGSTEVSGD
Sbjct: 205 IRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGD 264
Query: 60 CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFS 119
CTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI GLCLS GY
Sbjct: 265 CTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICVSGLCLSQGYM- 322
Query: 120 ESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG+
Sbjct: 323 HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGK 382
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+ + SI++W+
Sbjct: 383 RMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGG 442
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ + LLQ I+KA
Sbjct: 443 KLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKAV 502
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCN 358
AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 503 CDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGKLR 562
Query: 359 LDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNSTK 402
D+ + KL+ + + ++ HSG + + + KRLK++ K
Sbjct: 563 EDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEK 622
Query: 403 YFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFI 462
+ + +K W+ + C+FSRCNKV E + WSLE+PRN+ +
Sbjct: 623 FSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVSM 679
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGRIE SA
Sbjct: 680 QEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGSA 739
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD QLIWCGSHDH L
Sbjct: 740 MVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTL 799
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K PFHTLWL EL
Sbjct: 800 YALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFEL 859
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
E P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGPC S LPSQVL
Sbjct: 860 EAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQVL 919
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 920 VCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVTVCSSSGR 979
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGCRDDY++C++LE
Sbjct: 980 VHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSLE 1037
Query: 823 T 823
+
Sbjct: 1038 S 1038
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20466612|gb|AAM20623.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/841 (54%), Positives = 587/841 (69%), Gaps = 25/841 (2%)
Query: 1 MRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD 59
+R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P LNLYGSTEVSGD
Sbjct: 205 IRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGD 264
Query: 60 CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFS 119
CTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI GLCLS GY
Sbjct: 265 CTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICVSGLCLSQGYM- 322
Query: 120 ESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG+
Sbjct: 323 HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGK 382
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
RMALEEI+ TL +PD+ + V+ + + EL L AF+VL ++ SS+ + SI++W+
Sbjct: 383 RMALEEIKTTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGG 442
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ + LLQ I+KA
Sbjct: 443 KLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKAV 502
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCN 358
AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 503 CDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGKLR 562
Query: 359 LDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNSTK 402
D+ + KL+ + + ++ HSG + + + KRLK++ K
Sbjct: 563 EDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEK 622
Query: 403 YFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFI 462
+ + +K W+ + C+FSRCNKV E + WSLE+PRN+ +
Sbjct: 623 FSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVSM 679
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGRIE SA
Sbjct: 680 QEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGSA 739
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD QLIWCGSHDH L
Sbjct: 740 MVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTL 799
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K PFHTLWL EL
Sbjct: 800 YALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFEL 859
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
E P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGPC S LPSQVL
Sbjct: 860 EAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQVL 919
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 920 VCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVTVCSSSGR 979
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGCRDDY++C++LE
Sbjct: 980 VHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSLE 1037
Query: 823 T 823
+
Sbjct: 1038 S 1038
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8885525|dbj|BAA97455.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 908 bits (2347), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/841 (54%), Positives = 582/841 (69%), Gaps = 30/841 (3%)
Query: 1 MRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD 59
+R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P LNLYGSTEVSGD
Sbjct: 297 IRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGD 356
Query: 60 CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFS 119
CTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI GLCLS GY
Sbjct: 357 CTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICVSGLCLSQGYM- 414
Query: 120 ESTFMPSEYVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQ 178
S+ YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG+
Sbjct: 415 HSSIESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNGK 474
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+ + SI++W+
Sbjct: 475 RMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMGG 534
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ + LLQ I+KA
Sbjct: 535 KLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKAV 594
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCN 358
AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 595 CDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGKLR 654
Query: 359 LDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNSTK 402
D+ + KL+ + + ++ HSG + + + KRLK++ K
Sbjct: 655 EDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYEK 714
Query: 403 YFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFI 462
+ + +K W+ + C+FSRCNKV E + WSLE+PRN+ +
Sbjct: 715 FSPKRMKENK---LWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVSM 771
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGRIE SA
Sbjct: 772 QEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGSA 831
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD QLIWCGSHDH L
Sbjct: 832 MVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHTL 891
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K PFHTLWL EL
Sbjct: 892 YALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFEL 951
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
E P F SLCIT + ++ VDG V+A+ SG+IIWR RTGGPIFAGPC S LPSQVL
Sbjct: 952 EAPIFGSLCITPSTQN-----VDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQVL 1006
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 1007 VCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVTVCSSSGR 1066
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGCRDDY++C++LE
Sbjct: 1067 VHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSLE 1124
Query: 823 T 823
+
Sbjct: 1125 S 1125
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 829 | ||||||
| TAIR|locus:2142908 | 1040 | AT5G35930 [Arabidopsis thalian | 0.983 | 0.783 | 0.554 | 2.8e-247 | |
| UNIPROTKB|E1BSA3 | 1102 | AASDH "Uncharacterized protein | 0.351 | 0.264 | 0.369 | 1.6e-67 | |
| UNIPROTKB|E2RF67 | 1094 | AASDH "Uncharacterized protein | 0.316 | 0.239 | 0.356 | 2.7e-62 | |
| UNIPROTKB|E1BCU3 | 1106 | AASDH "Uncharacterized protein | 0.349 | 0.262 | 0.348 | 3.1e-61 | |
| UNIPROTKB|Q4L235 | 1098 | AASDH "Acyl-CoA synthetase fam | 0.314 | 0.237 | 0.351 | 8.5e-61 | |
| ZFIN|ZDB-GENE-041210-322 | 1149 | aasdh "aminoadipate-semialdehy | 0.408 | 0.295 | 0.322 | 9.2e-57 | |
| RGD|1311135 | 1099 | Aasdh "aminoadipate-semialdehy | 0.328 | 0.247 | 0.347 | 3.8e-56 | |
| MGI|MGI:2442517 | 1100 | Aasdh "aminoadipate-semialdehy | 0.351 | 0.264 | 0.344 | 6.4e-56 | |
| UNIPROTKB|G3V0G4 | 613 | AASDH "Acyl-CoA synthetase fam | 0.314 | 0.425 | 0.351 | 1.8e-50 | |
| UNIPROTKB|Q48KC2 | 2151 | PSPPH_1925 "Pyoverdine sidecha | 0.363 | 0.139 | 0.308 | 2.9e-27 |
| TAIR|locus:2142908 AT5G35930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2382 (843.6 bits), Expect = 2.8e-247, P = 2.8e-247
Identities = 467/842 (55%), Positives = 590/842 (70%)
Query: 1 MRVVLPALQSQ-HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD 59
+R +LP LQ + HN + S LKL+VLSGE P+S+WD + L P LNLYGSTEVSGD
Sbjct: 205 IRAILPTLQHRGHNNKLQSCLKLVVLSGEPFPVSLWDSLHSLLPETCFLNLYGSTEVSGD 264
Query: 60 CTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFS 119
CTYFDC LP +L+ + SVPIG ISNC +VL+ D KP EGEI GLCLS GY
Sbjct: 265 CTYFDCSELPRLLKTEEIGSVPIGKSISNCKVVLL-GDEDKPYEGEICVSGLCLSQGYMH 323
Query: 120 ESTFMPSE-YVKLHNNSICN-CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177
S + SE YVKLHNNS+CN + CGSQ Y+RTGD+ R++ SGDL+F+GR+DRT+K+NG
Sbjct: 324 SS--IESEGYVKLHNNSLCNHLTNDCGSQLYYRTGDYGRQLSSGDLIFIGRRDRTVKLNG 381
Query: 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS 237
+RMALEEIE TL +PD+ + V+ + + EL L AF+VL ++ SS+ + SI++W+
Sbjct: 382 KRMALEEIETTLELNPDIAEAVVLLSRDETELASLKAFVVLNKESNSSDGIIFSIRNWMG 441
Query: 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKA 297
KLP MIPN FV ++ LP+TSSGKVDY +L+ T AQ + LLQ I+KA
Sbjct: 442 GKLPPVMIPNHFVLVEKLPLTSSGKVDYEALARLKCPTTGAQDMMQSNGTNSLLQNIKKA 501
Query: 298 FGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLC 357
AL+V+EV D+FF +GG+S+AAAH++H+LGIDMRLIY F +PS+L I L EK+G
Sbjct: 502 VCDALLVKEVSDDDDFFAIGGDSLAAAHLSHSLGIDMRLIYQFRSPSRLLIYLSEKEGKL 561
Query: 358 NLDVSADANWKLNLEEDKEH---------QFHSGYSRTENHAVVS-------KRLKVNST 401
D+ + KL+ + + ++ HSG + + + KRLK++
Sbjct: 562 REDMQHNTTQKLDHKIESQNGNGLVSRTVPLHSGVTSGPTPSKLQCEKNNSPKRLKIDYE 621
Query: 402 KYFKPELHHHKDGLPWNLSSVPMSCSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGF 461
K F P+ K+ W+ + C+FSRCNKV E + WSLE+PRN+
Sbjct: 622 K-FSPK--RMKENKLWDSGFSQIQCAFSRCNKVHSPESCSNEEANREYWSLEIPRNQMVS 678
Query: 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 521
+QE+WKVHMESCVDASPLVVLKDS YLF+GSHS KF C DAK S+ WE LEGRIE S
Sbjct: 679 MQEIWKVHMESCVDASPLVVLKDSKTYLFIGSHSRKFSCIDAKSGSMYWETILEGRIEGS 738
Query: 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 581
A V+ DFSQVV+GCYKGK+YFLD+ TG + W FQ CGE+KCQPVVD QLIWCGSHDH
Sbjct: 739 AMVVGDFSQVVIGCYKGKLYFLDFSTGSLCWKFQACGEIKCQPVVDTSSQLIWCGSHDHT 798
Query: 582 LYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641
LYALD+R+ CVYKL CGGSIF SPAIDE H LYVASTSGR+ A+S+K PFHTLWL E
Sbjct: 799 LYALDYRSQCCVYKLQCGGSIFASPAIDEGHSSLYVASTSGRVIAVSIKDSPFHTLWLFE 858
Query: 642 LEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701
LE P F SLCIT + ++VICCLVDG V+A+ SG+IIWR RTGGPIFAGPC S LPSQV
Sbjct: 859 LEAPIFGSLCITPSTQNVICCLVDGQVIAMSPSGTIIWRYRTGGPIFAGPCMSHVLPSQV 918
Query: 702 LICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761
L+C RNG +YS E ESG L+WE ++GDPITASAYIDE+L + L+ DRLV +C+SSG
Sbjct: 919 LVCCRNGCVYSLEPESGCLVWEDNIGDPITASAYIDENLHFESHELLASDRLVTVCSSSG 978
Query: 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIAL 821
+H+LRV + ++ S D V E ++ELQ DIFSSPVMIGGR+FVGCRDDY++C++L
Sbjct: 979 RVHVLRVRPSILSRD--SHDSKVGEITRMELQADIFSSPVMIGGRIFVGCRDDYVHCLSL 1036
Query: 822 ET 823
E+
Sbjct: 1037 ES 1038
|
|
| UNIPROTKB|E1BSA3 AASDH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 1.6e-67, Sum P(4) = 1.6e-67
Identities = 113/306 (36%), Positives = 156/306 (50%)
Query: 466 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
WK + CVDASPL+V+ D +FVGSHSH D V WE KL RIE SA
Sbjct: 761 WKSNTRRCVDASPLIVISSKDEESASVFVGSHSHAMQAIDLDTGEVKWEKKLGDRIESSA 820
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V + +VVGCY G +Y L G+ YWTF T VK VVD L++ GSHD ++
Sbjct: 821 CVSKCGNFIVVGCYDGLVYVLQSSDGEAYWTFATEDTVKSSAVVDPSSGLVYIGSHDQHM 880
Query: 583 YALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641
YALD CV+KL C GG++F SP I +YVA+ G L A++ + + +W
Sbjct: 881 YALDIYEKMCVWKLHCEGGAVFSSPCISSFPHHVYVATLGGLLLAVN--PVTGNKIWKSF 938
Query: 642 LEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 700
L P F+S N +C VDG++ SG +W+ T GP+F+ PC S +
Sbjct: 939 LGKPLFSS---PHCNEKCVCIGCVDGNLYCYTHSGEKVWQFSTNGPVFSSPCISSLTKQE 995
Query: 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI---DEHLQLKLESCLSIDRLVCIC 757
V S + IY E GNLLW++ + + ++ D+ L + +S D V I
Sbjct: 996 VFFGSHDHFIYCCNTE-GNLLWKFEATSSVYGTPFVFQSDDSKNKVLLAAVSTDGKVWIL 1054
Query: 758 TS-SGS 762
+ SG+
Sbjct: 1055 NARSGT 1060
|
|
| UNIPROTKB|E2RF67 AASDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 2.7e-62, Sum P(4) = 2.7e-62
Identities = 98/275 (35%), Positives = 146/275 (53%)
Query: 466 WKVHMESCVDASPLVVLK---DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
W+ CVDASPLVV+ +S +++GSHSH+ + D V WE LE RIE SA
Sbjct: 755 WRSDTGKCVDASPLVVIPAVDESSATVYIGSHSHRMMALDLYSGKVKWEQILEDRIESSA 814
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
+ + +VVGCY G +Y L +G+ YW F T VK +D L++ GSHD +
Sbjct: 815 CISKCGNFIVVGCYNGLVYVLKSNSGEKYWMFSTEDAVKSSATMDPTTGLLYIGSHDQHS 874
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD +CV+K CGG++F SP + + LYVA+ G L AI+ + +W H
Sbjct: 875 YALDIYKKKCVWKSQCGGTVFSSPCLSLIPHHLYVATLGGLLLAINPAT--GNRVWKHSC 932
Query: 643 EVPAFAS--LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 700
P F+S C+ ++V VDG+++ SG +W+ T PIF+ PCTS A +
Sbjct: 933 GKPLFSSPRCCL----QYVCIGCVDGNLLCFTHSGEQVWQFSTSEPIFSSPCTS-ASEQE 987
Query: 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 735
+ S + IY + G+L W++ + A+ +
Sbjct: 988 IFFGSHDCFIYCCNMK-GHLQWKFETTSQVYATPF 1021
|
|
| UNIPROTKB|E1BCU3 AASDH "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 435 (158.2 bits), Expect = 3.1e-61, Sum P(4) = 3.1e-61
Identities = 107/307 (34%), Positives = 155/307 (50%)
Query: 466 WKVHMESCVDASPLVVLK--D-SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
W+ CVDASPLVV+ D S +++GSHSH+ I D V WE L RIE SA
Sbjct: 759 WRSDTGKCVDASPLVVIPAIDKSSATVYIGSHSHRMIAVDLYSGKVKWEQILGDRIESSA 818
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V + +VVGCY G +Y L +G+ YW F T VK +D L++ GSHD +
Sbjct: 819 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFSTEDAVKSSATMDPTTGLLYIGSHDQHA 878
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD +CV+KL CGG++F SP + + LY A+ G L AI+ LW H
Sbjct: 879 YALDIYKKKCVWKLKCGGTVFSSPCLSLIPSHLYFATLGGLLLAINPAT--GDRLWKHSC 936
Query: 643 EVPAFAS--LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ 700
P F+S C+ ++V VDG+++ G +W+ T PIF+ PCTS A +
Sbjct: 937 GKPLFSSPRCCL----QYVFIGCVDGNLLCFTHFGEQVWQFSTNEPIFSSPCTS-ASEQE 991
Query: 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI---DEHLQLKLESCLSIDRLVCIC 757
+ S + IY + G+L W++ + ++ ++ H L + S D + I
Sbjct: 992 IFFGSHDCFIYCCSMK-GHLQWKFETTSRVYSTPFVFRNHNHNSEMLLAAASTDGKLWIL 1050
Query: 758 TS-SGSI 763
S SG +
Sbjct: 1051 ESKSGQL 1057
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| UNIPROTKB|Q4L235 AASDH "Acyl-CoA synthetase family member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.5e-61, Sum P(4) = 8.5e-61
Identities = 97/276 (35%), Positives = 144/276 (52%)
Query: 466 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
W+ CVDASPLVV+ D +++GSHSH+ D V WE L RIE SA
Sbjct: 759 WRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSA 818
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V + +VVGCY G +Y L +G+ YW F T VK +D LI+ GSHD +
Sbjct: 819 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGSHDQHA 878
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD +CV+K CGG++F SP ++ + LY A+ G L A++ + +W H
Sbjct: 879 YALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLAVNPAT--GNVIWKHSC 936
Query: 643 EVPAFAS-LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ- 700
P F+S C ++++ VDG+++ G +W+ T GPIF+ PCTS PS+
Sbjct: 937 GKPLFSSPQC---CSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPCTS---PSEQ 990
Query: 701 -VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 735
+ S + IY + G+L W++ + A+ +
Sbjct: 991 KIFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPF 1025
|
|
| ZFIN|ZDB-GENE-041210-322 aasdh "aminoadipate-semialdehyde dehydrogenase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 9.2e-57, Sum P(2) = 9.2e-57
Identities = 124/384 (32%), Positives = 199/384 (51%)
Query: 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 521
++ LW+ CVDASP++++ +F+GSHSH+ D R V+WE L R+E S
Sbjct: 790 LRVLWRSDTGRCVDASPMLLVAPDRTTVFIGSHSHRLQALDLSRGEVIWERILGDRLESS 849
Query: 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 581
AA+ + V +GCY ++YFLD GD WTF+T VK P VD L++ GSHD +
Sbjct: 850 AAISSCGGLVAIGCYDRQMYFLDVSCGDTVWTFETGDVVKSSPTVDPKTGLVFAGSHDGH 909
Query: 582 LYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640
+YAL+ C ++ CGG ++F SP + LY +S G L ++ + LW +
Sbjct: 910 VYALNPLTKTCTWQHYCGGGAVFSSPCVHLSPRQLYCSSLGGHLHCLNPDS--GKVLWKY 967
Query: 641 ELEVPAFASL-CITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFAL- 697
P F+S C S+ V V+GH++ + SG+ +W T GP+F+ PC +S L
Sbjct: 968 SSSAPFFSSPHCSDSS---VFIGSVNGHIIGISHSGNTLWDFSTDGPVFSSPCISSLTLL 1024
Query: 698 ----------------PSQVLIC-SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHL 740
P+ ++ C S +G +Y ++G+LLW++ + ++ ++
Sbjct: 1025 TNQPPSTTPSSSVTTSPNHIVTCGSHDGHVYCLNAQNGSLLWQFQTTGKVFSTPFVFSGA 1084
Query: 741 QLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800
L + L +C++ G + +L TG +Q+ A L L G++FSSP
Sbjct: 1085 LWGLRT------LAAVCSTDGKVWVLDGE---TG---------IQK-ATLSLPGELFSSP 1125
Query: 801 VMIGGRVFVGCRDDYIYCIALETQ 824
V+ G ++ VGCR+DY+YC+ L TQ
Sbjct: 1126 VIWGSKLVVGCRNDYVYCLELTTQ 1149
|
|
| RGD|1311135 Aasdh "aminoadipate-semialdehyde dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 3.8e-56, Sum P(4) = 3.8e-56
Identities = 99/285 (34%), Positives = 143/285 (50%)
Query: 462 IQELWKVHMESCVDASPLVVLK---D-SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 517
++E W+ CVDASPL+V+ D S +++GSHSH D + WE ++ R
Sbjct: 752 LRERWRSDTGKCVDASPLLVVAAVGDTSSTTVYIGSHSHTVKAVDLHSGEMRWERRVGDR 811
Query: 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 577
IE SA V + +VVGCY G +Y L +G+ +WTF T VK P VD LI+ GS
Sbjct: 812 IESSACVSKCGNFIVVGCYDGLVYVLKSNSGEKHWTFPTEDAVKSSPAVDPTTGLIYVGS 871
Query: 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ +
Sbjct: 872 HDQHAYALDIYEKKCVWKLKCEGALFSSPCLSLGPHHLYCATLGGLLLAVNPATGSL--I 929
Query: 638 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 696
W P F+S +H +C VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 930 WKRPCGKPLFSS---PRCYQHYVCIGCVDGSLLCFSHSGEQVWRFSAGGPIFSSPCIS-A 985
Query: 697 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHL 740
+ S + +Y E G L W++ + ++ + HL
Sbjct: 986 SEQDIYFGSHDCFLYCCSTEGG-LRWKFETTARVYSTPFAFPNHL 1029
|
|
| MGI|MGI:2442517 Aasdh "aminoadipate-semialdehyde dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 433 (157.5 bits), Expect = 6.4e-56, Sum P(4) = 6.4e-56
Identities = 107/311 (34%), Positives = 155/311 (49%)
Query: 462 IQELWKVHMESCVDASPLVV---LKDS-DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 517
++E W+ CVDASPL+V ++D +++GSHSH D WE L R
Sbjct: 753 LRERWRSDTGKCVDASPLLVRAAVQDKPSTTVYIGSHSHTVKAVDLSSGETRWEQLLGDR 812
Query: 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS 577
IE SA V + +VVGCY G +Y L +G+ YWTF T VK P VD LI+ GS
Sbjct: 813 IESSACVSKCGNFIVVGCYNGLVYVLKSNSGEKYWTFTTEDAVKSSPAVDPTTGLIYVGS 872
Query: 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637
HD + YALD +CV+KL C G++F SP + LY A+ G L A++ + T+
Sbjct: 873 HDQHAYALDIYEKKCVWKLNCEGALFSSPCVSLSPHHLYCATLGGLLLALNPAS--GSTV 930
Query: 638 WLHELEVPAFASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFA 696
W P F+S + IC VDG ++ SG +WR GGPIF+ PC S A
Sbjct: 931 WKRSCGKPLFSS---PRCYQQYICIGCVDGSLLCFTHSGEQVWRFAAGGPIFSSPCVS-A 986
Query: 697 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-IDEHLQLKLESCLSIDRLVC 755
++ S + IY +E G+L W++ + A+ + H + S D L+
Sbjct: 987 AEQEIFFGSHDCFIYCCSKE-GHLRWKFETTARVYATPFAFSNHPR-------SDDALLA 1038
Query: 756 ICTSSGSIHIL 766
++ G + +L
Sbjct: 1039 AASTDGKLWVL 1049
|
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| UNIPROTKB|G3V0G4 AASDH "Acyl-CoA synthetase family member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 1.8e-50, Sum P(3) = 1.8e-50
Identities = 97/276 (35%), Positives = 144/276 (52%)
Query: 466 WKVHMESCVDASPLVVLKDSD---IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
W+ CVDASPLVV+ D +++GSHSH+ D V WE L RIE SA
Sbjct: 274 WRSDTGKCVDASPLVVIPTFDKSSTTVYIGSHSHRMKAVDFYSGKVKWEQILGDRIESSA 333
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V + +VVGCY G +Y L +G+ YW F T VK +D LI+ GSHD +
Sbjct: 334 CVSKCGNFIVVGCYNGLVYVLKSNSGEKYWMFTTEDAVKSSATMDPTTGLIYIGSHDQHA 393
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YALD +CV+K CGG++F SP ++ + LY A+ G L A++ + +W H
Sbjct: 394 YALDIYRKKCVWKSKCGGTVFSSPCLNLIPHHLYFATLGGLLLAVNPAT--GNVIWKHSC 451
Query: 643 EVPAFAS-LCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQ- 700
P F+S C ++++ VDG+++ G +W+ T GPIF+ PCTS PS+
Sbjct: 452 GKPLFSSPQC---CSQYICIGCVDGNLLCFTHFGEQVWQFSTSGPIFSSPCTS---PSEQ 505
Query: 701 -VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 735
+ S + IY + G+L W++ + A+ +
Sbjct: 506 KIFFGSHDCFIYCCNMK-GHLQWKFETTSRVYATPF 540
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| UNIPROTKB|Q48KC2 PSPPH_1925 "Pyoverdine sidechain peptide synthetase III, L-Thr-L-Ser component" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 346 (126.9 bits), Expect = 2.9e-27, P = 2.9e-27
Identities = 103/334 (30%), Positives = 166/334 (49%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+SL+ +V SGE LP + + K P + NLYG TE + D T++ C + +L
Sbjct: 1807 NSLRRVVCSGEALPSELAGQVLKRLPQTGLFNLYGPTEAAIDVTHWTCTK-DDVL----- 1860
Query: 78 KSVPIGLPISNCDIVLVESDTVKPDEG---EIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
SVPIG PI N +++ + +G E+Y GG+ L+ GY + + +V
Sbjct: 1861 -SVPIGRPIDNLKTHILDDGLLPAAQGVSAELYLGGIGLARGYHNRAALTAERFVP---- 1915
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ G + Y RTGD AR G + + GR D +KI G R+ L EIE +L H
Sbjct: 1916 ---DPFDEQGGRLY-RTGDLARYRDEGVIEYAGRIDHQVKIRGLRIELGEIEASLLEHGS 1971
Query: 195 VVDTAVVS-HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
V + V+ G+ L A++V + S + ++K ++ LP M+P FV++
Sbjct: 1972 VQEAVVIDVDGPSGKQ--LAAYLVAEH---SGDNLRDALKVYLKETLPDYMVPTHFVWLA 2026
Query: 254 SLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNF 313
S+P++++GK+D +L + + Q+ A T+ + I + L VE V D+F
Sbjct: 2027 SMPLSANGKLDRKALPTPDASQLQRQYVAPSTEQEQQMAAI---WADVLKVERVGLSDDF 2083
Query: 314 FTMGGNSIAAAHVA---HN-LGID--MRLIYNFP 341
F +GG+S+ A + H LGID +RLI+ P
Sbjct: 2084 FELGGHSLLATQLISRIHTGLGIDIPLRLIFEKP 2117
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F4K1G2 | AEE19_ARATH | No assigned EC number | 0.5505 | 0.9843 | 0.7846 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XIX.1316.1 | hypothetical protein (1054 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.33130002 | Predicted protein (340 aa) | • | • | 0.509 | ||||||
 | fgenesh4_pg.C_scaffold_9979000001 | hypothetical protein (504 aa) | • | • | 0.430 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 829 | |||
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 4e-62 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 3e-53 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 3e-46 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 3e-43 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 3e-43 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-42 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 8e-42 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-41 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 2e-40 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-39 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-38 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-38 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-36 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-34 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 3e-34 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 2e-33 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-33 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 2e-33 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-32 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-31 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 3e-31 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-29 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 1e-29 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-27 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-27 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 4e-27 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 2e-26 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 3e-23 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 4e-23 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-21 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 9e-21 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 3e-20 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 4e-20 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 6e-20 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 5e-19 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 5e-19 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-18 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-18 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 3e-18 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 3e-18 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 4e-18 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 1e-17 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 4e-17 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 2e-16 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 3e-16 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 4e-16 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 6e-16 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 6e-16 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 1e-15 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 3e-15 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 4e-15 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 6e-15 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 7e-15 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 2e-14 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 2e-14 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-14 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 1e-13 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-13 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 2e-13 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-13 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 5e-13 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-13 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 9e-13 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 2e-12 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 2e-12 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 3e-12 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 5e-12 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 6e-12 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 1e-11 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 1e-11 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 1e-11 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 2e-11 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-11 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-11 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-11 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 3e-11 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-11 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 4e-11 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 8e-11 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 9e-11 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-10 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 1e-10 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-10 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 2e-10 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 3e-10 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 3e-10 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 4e-10 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 4e-10 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 5e-10 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 5e-10 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 5e-10 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 6e-10 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 7e-10 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 8e-10 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 1e-09 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 1e-09 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 1e-09 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 1e-09 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 2e-09 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 5e-09 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 5e-09 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 6e-09 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 6e-09 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-09 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 8e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 9e-09 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 9e-09 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 9e-09 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 1e-08 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 1e-08 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-08 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 1e-08 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-08 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 2e-08 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 3e-08 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 3e-08 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-08 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 4e-08 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 5e-08 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 5e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 5e-08 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 6e-08 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 8e-08 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 1e-07 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 1e-07 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 1e-07 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 2e-07 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 2e-07 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 2e-07 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 4e-07 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 8e-07 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 2e-06 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 2e-06 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-06 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 3e-06 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 3e-06 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 3e-06 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 5e-06 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-06 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 8e-06 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 1e-05 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 1e-05 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 2e-05 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-05 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 6e-05 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-04 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 1e-04 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-04 | |
| PRK11138 | 394 | PRK11138, PRK11138, outer membrane biogenesis prot | 5e-04 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 5e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 6e-04 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 6e-04 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 7e-04 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 7e-04 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 0.001 | |
| PRK05851 | 525 | PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c | 0.001 | |
| pfam00550 | 66 | pfam00550, PP-binding, Phosphopantetheine attachme | 0.001 | |
| pfam01011 | 38 | pfam01011, PQQ, PQQ enzyme repeat | 0.001 | |
| pfam13570 | 39 | pfam13570, YWTD, YWTD domain | 0.001 | |
| PRK11138 | 394 | PRK11138, PRK11138, outer membrane biogenesis prot | 0.002 | |
| pfam01011 | 38 | pfam01011, PQQ, PQQ enzyme repeat | 0.002 | |
| pfam13570 | 39 | pfam13570, YWTD, YWTD domain | 0.002 | |
| PRK08043 | 718 | PRK08043, PRK08043, bifunctional acyl-[acyl carrie | 0.002 | |
| cd10277 | 529 | cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacte | 0.002 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 0.003 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 0.003 | |
| TIGR03075 | 526 | TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydroge | 0.003 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 0.003 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 0.003 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 0.003 | |
| PRK09192 | 579 | PRK09192, PRK09192, acyl-CoA synthetase; Validated | 0.004 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 215 bits (551), Expect = 4e-62
Identities = 89/276 (32%), Positives = 137/276 (49%), Gaps = 33/276 (11%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
+R +L AL+ SL+L+++ GE LP + +LFP ++N YG TE + D
Sbjct: 195 LRALLDALEPAA----LPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDV 250
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGLCLSNGY 117
TY + + SVPIG PI+N + VL E P GE+Y GG ++ GY
Sbjct: 251 TYHEVDP-----DDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGY 305
Query: 118 F-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172
+ F+P + + +RTGD AR + G+L FLGR D
Sbjct: 306 LNRPELTAERFVPDPFGG-------------PGERLYRTGDLARWLPDGNLEFLGRADDQ 352
Query: 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 232
+KI G R+ L EIE L HP V + VV+ + LVA++V + +
Sbjct: 353 VKIRGYRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDA---AEL 409
Query: 233 KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
+++++ +LP M+P+ FV +D+LP+T +GKVD +L
Sbjct: 410 RAFLAERLPDYMVPSAFVVLDALPLTPNGKVDRKAL 445
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 3e-53
Identities = 87/267 (32%), Positives = 131/267 (49%), Gaps = 27/267 (10%)
Query: 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD 64
L + SL+ + GEVLP + + + FPN I+NLYG TE + T ++
Sbjct: 205 SRELNPESL----PSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTEATVAVTAYE 260
Query: 65 CKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKP-DEGEIYAGGLCLSNGYFSES 121
P S + +PIG P ++++ D V P +EGE+ G +S GY +
Sbjct: 261 VTPEPL----SRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNP 316
Query: 122 TFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMA 181
+ Q ++RTGD G LV+LGRKD IK++G R+
Sbjct: 317 E--------KTAKAF----FQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIE 364
Query: 182 LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
LEEIE LR P V + V+ ++V LVAF+V KE ++ +K + +LP
Sbjct: 365 LEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKA----LKKELKKRLP 420
Query: 242 LAMIPNRFVFMDSLPMTSSGKVDYASL 268
MIP RFV++DSLP+ ++GK+D +L
Sbjct: 421 PYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 171 bits (437), Expect = 3e-46
Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 44/265 (16%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD-CKRLPSILEMST 76
+ L+ L++ G+VL + + P + ++N YG TE T F C + + E +
Sbjct: 240 AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYGPTE----NTTFSTCHVITRLDEAAD 295
Query: 77 LKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGLCLSNGY----------FSESTF 123
S+PIG PI N + +L E P GE+Y GG L+ GY F F
Sbjct: 296 --SIPIGRPIPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPF 353
Query: 124 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
P E +RTGD AR G++ FLGR DR +KI G R+ L
Sbjct: 354 GPGE-------------------RLYRTGDLARWRPDGNIEFLGRIDRQVKIRGFRIELG 394
Query: 184 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 243
EIE L HP V + AV+ + LVA++V + ++E +++ ++ +LP
Sbjct: 395 EIEQALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALDAAE-----LRAHLAERLPAY 449
Query: 244 MIPNRFVFMDSLPMTSSGKVDYASL 268
M+P FV +D LP+T++GKVD +L
Sbjct: 450 MVPAAFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 3e-43
Identities = 84/275 (30%), Positives = 127/275 (46%), Gaps = 36/275 (13%)
Query: 6 PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDC 65
P+L + + SL+ L+L GE P + ++ + +LN YG TE + T
Sbjct: 196 PSLLALLDPEDVPSLRTLILGGEACPQA---LVDRWSKPRRLLNTYGPTEATVTATASRL 252
Query: 66 KRLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF--- 118
P K V IG P+ N +++ D V GE+ GG ++ GY
Sbjct: 253 T--PG-------KPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRP 303
Query: 119 --SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKIN 176
+ F+P + + +RTGD R ++ G L FLGRKD +KI
Sbjct: 304 ELTAEKFIPDPFWLNNP-----------GGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIR 352
Query: 177 GQRMALEEIEHTLRGHPDVVDTAVV-SHKHQGELVILVAFIVLKEKKTSSE--IFLSSIK 233
GQR+ L EIE LR P VV AVV G LVAF+ + + ++ ++
Sbjct: 353 GQRIELGEIEAVLRALPGVVVAAVVLLLDDPGG-KQLVAFLAVDGAAGGEPADVDIALLR 411
Query: 234 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
S + +LP M+P+ +V +D LP+T+SGKVD +L
Sbjct: 412 SALRERLPSYMVPSVYVPLDELPLTASGKVDRKAL 446
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 163 bits (415), Expect = 3e-43
Identities = 83/262 (31%), Positives = 130/262 (49%), Gaps = 33/262 (12%)
Query: 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
+ SL+L++LSG+ +PL + + L P +++L G+TE S Y+ +
Sbjct: 240 RLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSIYYPIDDVDPDW-- 297
Query: 75 STLKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGLCLSNGYF-----SESTFMPS 126
+S+P G P+ N VL E PD GE+Y GG+ ++ GY+ + F+
Sbjct: 298 ---RSIPYGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFIT- 353
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
H G + Y RTGD R G + FLGR D +KI G R+ L EIE
Sbjct: 354 -----HRT---------GERLY-RTGDLGRYRPDGTIEFLGRADHQVKIRGYRVELGEIE 398
Query: 187 HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
L HP V VV G L AF+V ++ + + + +++ ++ LP M+P
Sbjct: 399 AALARHPGVQRAVVVVVGDGGAKA-LAAFVVAED---GAAVDAAVLRAALAELLPAYMVP 454
Query: 247 NRFVFMDSLPMTSSGKVDYASL 268
+RFV +D+LP+T++GKVD +L
Sbjct: 455 SRFVVLDALPLTANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (421), Expect = 7e-42
Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 32/320 (10%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
P + LV GE L + + + L P ++N YG TE + + ++
Sbjct: 770 PRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVSTYELSDEER-----D 824
Query: 77 LKSVPIGLPISNCDIVLVESD---TVKPDEGEIYAGGLCLSNGY-----FSESTFMPSEY 128
+VPIG P++N + +++ GE+Y GG L+ GY + F+P +
Sbjct: 825 FGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAERFVPDPF 884
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
+RTGD AR G + +LGR D +KI G R+ L EIE
Sbjct: 885 -------------GADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEAR 931
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE--IFLSSIKSWVSSKLPLAMIP 246
L P V + V++ L LVA++V +E +K+ + LP M+P
Sbjct: 932 LLAQPGVREAVVLAQPGDAGL-QLVAYLVPAAVADGAEHQATRDELKAQLRQVLPDYMVP 990
Query: 247 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEE 306
+ +DSLP+T +GK+D +L + + A A +T +L + + + L VE
Sbjct: 991 AHLLLLDSLPLTPNGKLDRKALPKPDASAVQATFVAPQT---ELEKRLAAIWADVLKVER 1047
Query: 307 VLHHDNFFTMGGNSIAAAHV 326
V DNFF +GG+S+ A V
Sbjct: 1048 VGLTDNFFELGGHSLLATQV 1067
|
Length = 3956 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 8e-42
Identities = 82/261 (31%), Positives = 117/261 (44%), Gaps = 37/261 (14%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISIL-NLYGSTEVSGDCTYFDCKRLPSILEMS 75
SL L GE LP + + +L + L N+YG TE + C R+ +
Sbjct: 206 RESLTALC-GGEALPRDLAE---RLLSTGAELWNMYGPTET---TIWSTCARV-----TA 253
Query: 76 TLKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYF-----SESTFMPSE 127
V IG PI+N + +++ D V P GE+Y GG ++ GY + F+P
Sbjct: 254 ADGPVTIGRPIANTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVPDP 313
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
+ +RTGD R G L +LGR D +KI G R+ L EIE
Sbjct: 314 F-------------DDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRIELGEIEA 360
Query: 188 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247
LR HP V D VV + LVA++V K L ++ + + LP M+P
Sbjct: 361 ALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAEAL---RAALRATLPAYMVPA 417
Query: 248 RFVFMDSLPMTSSGKVDYASL 268
FV +D LP+T +GKVD +L
Sbjct: 418 AFVQLDELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 6e-41
Identities = 80/261 (30%), Positives = 127/261 (48%), Gaps = 30/261 (11%)
Query: 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
+PSS++ + L+GE LP + + L + NLYG +E D TY + +E
Sbjct: 211 LPSSVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSE---DTTYSTY----AEVEPG 263
Query: 76 TLKSVPIGLPISNCDI-VLVESDTVKPD--EGEIYAGGLCLSNGYF-----SESTFMPSE 127
++ IG P++ VL P GE+Y GG ++ GY + F+P
Sbjct: 264 ASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLP-- 321
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
N + + +RTGD RR G L +LGR D +K+ G R+ L EIE
Sbjct: 322 -----NPFAGS-----PGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIELGEIEA 371
Query: 188 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247
LR P V + VV+ LVA+IV + I + +++ ++++LP M+P+
Sbjct: 372 ALRSIPGVAEAVVVAIGDAAGDRQLVAYIVADP---GAAIDIEDLRARLATRLPAYMVPS 428
Query: 248 RFVFMDSLPMTSSGKVDYASL 268
RFV +D+LP+T +GK+D +L
Sbjct: 429 RFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-40
Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 30/256 (11%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL+L++ G LP + + + F I+IL YG TE S T +L
Sbjct: 291 SSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVT---INPPDDLLAKPGS 347
Query: 78 KSVPIGLPISNCDIVLVESDTVKP---DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
+G P+ ++ +V+ D + + GEI+ G + GY++ P + +
Sbjct: 348 ----VGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVMKGYWN----RPEATAEAFDE 399
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ RTGD + G L +GR I G+ + EEIE L HP
Sbjct: 400 D-----------GWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPA 448
Query: 195 VVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
V + AVV + GE V VA +VLK +E+ +++++ +L L +P VF+
Sbjct: 449 VAEAAVVGVPDERWGERV--VAVVVLKP-GGDAELTAEELRAFLRKRLALYKVPRIVVFV 505
Query: 253 DSLPMTSSGKVDYASL 268
D LP T+SGK+D +L
Sbjct: 506 DELPRTASGKIDRRAL 521
|
Length = 534 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 3e-39
Identities = 103/338 (30%), Positives = 163/338 (48%), Gaps = 40/338 (11%)
Query: 7 ALQS--QHNMHV--PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY 62
LQ Q + V P SL+ +V GE L + + P+ + NLYG TE + D T+
Sbjct: 1819 MLQQLLQMDEQVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTH 1878
Query: 63 FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----GEIYAGGLCLSNGY- 117
+ C+R ++ SVPIG PI+N ++++ ++ P GE+Y GG+ L+ GY
Sbjct: 1879 WTCRRK----DLEGRDSVPIGQPIANLSTYILDA-SLNPVPIGVAGELYLGGVGLARGYL 1933
Query: 118 ----FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173
+ F+ + + GS+ Y RTGD AR G + +LGR D +
Sbjct: 1934 NRPALTAERFVADPFGTV------------GSRLY-RTGDLARYRADGVIEYLGRIDHQV 1980
Query: 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV-----LKEKKTSSEIF 228
KI G R+ L EIE LR V + V++ LVA++V L + +
Sbjct: 1981 KIRGFRIELGEIEARLREQGGVREAVVIAQDGANG-KQLVAYVVPTDPGLVDDDEAQVAL 2039
Query: 229 LSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKAS 288
+ +K+ + + LP M+P VF+ +P+T +GK+D +L A + S A S
Sbjct: 2040 RAILKNHLKASLPEYMVPAHLVFLARMPLTPNGKLDRKALPAPDA---SELQQAYVAPQS 2096
Query: 289 DLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326
+L Q + + L +E+V HDNFF +GG+SI + V
Sbjct: 2097 ELEQRLAAIWQDVLGLEQVGLHDNFFELGGDSIISIQV 2134
|
Length = 3956 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 1e-38
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 34/258 (13%)
Query: 12 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI 71
+ SSL+LL+ GE L + + + P IL YG TE S +
Sbjct: 110 DRGYDLSSLRLLISGGEPLSPELLERFEER-PGAPILEGYGLTETSVVTSTN-------- 160
Query: 72 LEMSTLKSVPIGLPISNCDIVLV--ESDTVKPDE-GEIYAGGLCLSNGYFSESTFMP--S 126
+ K +G P+ ++ +V E + P E GE+ G + GY P +
Sbjct: 161 PDSELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGY----WNNPPET 216
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+ ++RTGD + G L GR IK+ G+ + E+E
Sbjct: 217 TAAATEDG-------------WYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVE 263
Query: 187 HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
L HP V + AVV + +VAF+VL+ + +K+ + +L +P
Sbjct: 264 SVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALA---EELKAHLRERLAPYKVP 320
Query: 247 NRFVFMDSLPMTSSGKVD 264
F+D LP T+SGK+D
Sbjct: 321 RVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-38
Identities = 99/331 (29%), Positives = 159/331 (48%), Gaps = 42/331 (12%)
Query: 7 ALQS-QHNMHVPS--SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYF 63
LQ+ + V S SL+ +V SGE LP + + P + NLYG TE + D T++
Sbjct: 756 MLQAFLQDEDVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHW 815
Query: 64 DCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD-TVKPD--EGEIYAGGLCLSNGY--- 117
C SVPIG PI+N +++++ P GE+Y G L+ GY
Sbjct: 816 TCVE-------EGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGR 868
Query: 118 --FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175
+ F+PS +V G + Y RTGD AR G + + GR D +K+
Sbjct: 869 PGLTAERFVPSPFVA-------------GERMY-RTGDLARYRADGVIEYAGRIDHQVKL 914
Query: 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSW 235
G R+ L EIE L HP V + AV++ + LV ++VL+ + + ++K+
Sbjct: 915 RGLRIELGEIEARLLEHPWVREAAVLAVDGKQ----LVGYVVLESEGGD---WREALKAH 967
Query: 236 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIR 295
+++ LP M+P +++ ++ LP+T +GK+D +L A + + A L + +
Sbjct: 968 LAASLPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQQGYVAPRN---ALERTLA 1024
Query: 296 KAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326
+ L VE V DNFF +GG+SI + V
Sbjct: 1025 AIWQDVLGVERVGLDDNFFELGGDSIVSIQV 1055
|
Length = 5163 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 2e-36
Identities = 92/350 (26%), Positives = 154/350 (44%), Gaps = 50/350 (14%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
P SL++ GE + + +D+ + + + N YG TE + + + +
Sbjct: 4808 PPSLRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDG----DACG 4863
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDE----GEIYAGGLCLSNGYF-----SESTFMPSE 127
+PIG P+ N +++ + P GE+Y GG ++ GY + F+P
Sbjct: 4864 AAYMPIGTPLGNRSGYVLD-GQLNPLPVGVAGELYLGGEGVARGYLERPALTAERFVPDP 4922
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
+ G + Y RTGD AR G + +LGR D +KI G R+ L EIE
Sbjct: 4923 FGAP------------GGRLY-RTGDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEA 4969
Query: 188 TLRGHPDVVDTAVV----SHKHQGELVILVAFIV-----LKEKKTSSEIFLSSIKSWVSS 238
LR HP V + V+ + Q LV ++V L + + +K+ +
Sbjct: 4970 RLREHPAVREAVVIAQEGAVGKQ-----LVGYVVPQDPALADADEAQAELRDELKAALRE 5024
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAF 298
+LP M+P VF+ +P+T +GK+D +L S A S+L Q + +
Sbjct: 5025 RLPEYMVPAHLVFLARMPLTPNGKLDRKALPQ---PDASLLQQAYVAPRSELEQQVAAIW 5081
Query: 299 GHALMVEEVLHHDNFFTMGGNSIAA----AHVAHNLGIDM--RLIYNFPT 342
L +E V DNFF +GG+S+ A + + LG+++ R ++ PT
Sbjct: 5082 AEVLQLERVGLDDNFFELGGHSLLAIQVTSRIQLELGLELPLRELFQTPT 5131
|
Length = 5163 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-34
Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 33/194 (17%)
Query: 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
+ SSL+L++ GE LP + + + F + ++N YG TE + T
Sbjct: 244 YDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLP-------GD 296
Query: 75 STLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYF-----SESTFMPS 126
+K IG P+ ++ +++ + V P E GE+ G ++ GY + F+
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVED 356
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+ +RTGD R + G L LGRKD +KI G+R+ EIE
Sbjct: 357 GWG------------------MYRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIE 398
Query: 187 HTLRGHPDVVDTAV 200
L HP V + AV
Sbjct: 399 AVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 3e-34
Identities = 61/193 (31%), Positives = 88/193 (45%), Gaps = 25/193 (12%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
+SL+L++L GE L ++ D P ++NLYG TE + T + E
Sbjct: 234 LASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDAPRE--- 290
Query: 77 LKSVPIGLPISNCDIVLVESDTVK-PD--EGEIYAGGLCLSNGYF-----SESTFMPSEY 128
VPIG P++N + +++ D P GE+Y GG ++ GY + F+P +
Sbjct: 291 -SPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPF 349
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
+RTGD R + G+L FLGR D +KI G R+ L EIE
Sbjct: 350 A------------GGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAA 397
Query: 189 LRGHPDVVDTAVV 201
L HP V AVV
Sbjct: 398 LLRHPG-VREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-33
Identities = 75/264 (28%), Positives = 113/264 (42%), Gaps = 42/264 (15%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SL+ L +G LP + + FP+ + ++YG TE R + L
Sbjct: 116 FPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTE---------AFRS-TYLPPEE 165
Query: 77 LKSVP--IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYF--SEST---FMPS 126
L P IG I N ++ +V+ D P E GE+ G + GY+ E+T P
Sbjct: 166 LDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPG 225
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+ TGD R + G L F+GRKD IK G R++ EIE
Sbjct: 226 PLPG---------------EIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIE 270
Query: 187 HTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244
+ HP V + AV+ G+ +VA +V + ++ E + LP M
Sbjct: 271 EVICAHPLVAEAAVIGVPDPLLGQ--AIVAVVVSADGESLDE---KELLKHCRKHLPNYM 325
Query: 245 IPNRFVFMDSLPMTSSGKVDYASL 268
+P VF+DSLP ++GKVD ++L
Sbjct: 326 VPAEIVFVDSLPKNANGKVDRSAL 349
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 2e-33
Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 44/368 (11%)
Query: 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFD 64
+ +L + +SL+ + SGE LP + +L + NLYG TE + D +++
Sbjct: 704 VASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYP 762
Query: 65 CKRLPSILEMSTLKSVPIGLPISNCDIVLVES--DTVKPD-EGEIYAGGLCLSNGY---- 117
L SVPIG P+ N + ++++ V P G++Y G+ L+ GY
Sbjct: 763 AF--GEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRP 820
Query: 118 -FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKIN 176
+ S F+ + G + Y RTGD AR + G + +LGR D +KI
Sbjct: 821 DLTASRFIADPFAP-------------GERMY-RTGDVARWLDDGAVEYLGRSDDQLKIR 866
Query: 177 GQRMALEEIEHTLRGHPDV---VDTAVV---SHKHQGELVILVAFIVLKEKKTSSEIFLS 230
GQR+ L EI+ ++ PDV V A V + G+ LV ++V + + S
Sbjct: 867 GQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLP---LDTS 923
Query: 231 SIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDL 290
++++ + +LP M+P + +D LP++++GK+D +L A +T
Sbjct: 924 ALQAQLRERLPPHMVPVVLLQLDQLPLSANGKLDRKALPLPE-LKAQVPGRAPKTGTE-- 980
Query: 291 LQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRL------IYNFPTPS 344
+I AF L + V +FF +GG+S+ A +A L + T +
Sbjct: 981 -TIIAAAFSSLLGCDVVDADADFFALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVA 1039
Query: 345 KLEIALLE 352
KL L
Sbjct: 1040 KLATLLDA 1047
|
Length = 1296 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 82/281 (29%), Positives = 128/281 (45%), Gaps = 43/281 (15%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
M ++ P+ +H +L + GE LP + + FP+ +I N YG TE +
Sbjct: 247 MCLLDPSFNEEHL----PNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAV 302
Query: 61 TYFDCKRLPSI---LEM-STLKSVPIGLPISNCDIVLVESDTVK---PDEGEIYAGGLCL 113
T SI EM K +PIG + +++++ + K ++GEI G +
Sbjct: 303 T--------SIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSV 354
Query: 114 SNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168
S GY + F + G Y TGD ++ G L + GR
Sbjct: 355 SKGYLNNPEKTAEAFFTFD----------------GQPAY-HTGDAGY-LEDGLLFYQGR 396
Query: 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIF 228
D IK+NG R+ LEEIE LR V VV + ++ L+A++V KE+ E
Sbjct: 397 IDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFE 456
Query: 229 LSS-IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
L+ IK + +L MIP +F++ DSLP+T +GK+D +L
Sbjct: 457 LTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKAL 497
|
Length = 503 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (343), Expect = 2e-32
Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 36/351 (10%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
P ++++ GE +P + + + + + N YG TE + C+ +
Sbjct: 2260 PPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQ----DPCG 2315
Query: 77 LKSVPIGLPISNCDIVLVESD-TVKPDE--GEIYAGGLCLSNGYF-----SESTFMPSEY 128
VPIG + N ++++D + GE+Y GG L+ GY + F+P +
Sbjct: 2316 AAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPF 2375
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
+ G + Y RTGD AR G + +LGR D +KI G R+ L EIE
Sbjct: 2376 S------------ASGERLY-RTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEAR 2422
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L+ HP V + VV+ LVA++V ++E L+ +++W++++LP M+P
Sbjct: 2423 LQAHPAVREAVVVAQDGASG-KQLVAYVV---PDDAAEDLLAELRAWLAARLPAYMVPAH 2478
Query: 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVL 308
+V ++ LP+ +GK+D +L +S A L Q + + L VE+V
Sbjct: 2479 WVVLERLPLNPNGKLDRKALPKP---DVSQLRQAYVAPQEGLEQRLAAIWQAVLKVEQVG 2535
Query: 309 HHDNFFTMGGNSIAAAHVA----HNLGIDMRLIYNFPTPSKLEIALLEKKG 355
D+FF +GG+S+ A V +LG+++ L F P+ A + G
Sbjct: 2536 LDDHFFELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586
|
Length = 5163 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-31
Identities = 95/349 (27%), Positives = 156/349 (44%), Gaps = 47/349 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
L+ ++ +GE +P + + +P I ++N YG E S D +F L +
Sbjct: 3983 DGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFF-----RVDLASTRG 4037
Query: 78 KSVPIGLPISNCDIVLVESD-TVKP--DEGEIYAGGLCLSNGYFSES-----TFMPSEYV 129
+PIG P N + L++ + P GE+ G + GY + F+P +
Sbjct: 4038 SYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFG 4097
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
+ G + Y RTGD ARR G L ++GR D +KI G R+ L EIE L
Sbjct: 4098 ------------APGERLY-RTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARL 4144
Query: 190 RGHPDVVDTAV-----VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244
+V + AV V+ KH LV ++V + + L IK + ++LP M
Sbjct: 4145 HEQAEVREAAVAVQEGVNGKH------LVGYLVPHQTVLAQGALLERIKQRLRAELPDYM 4198
Query: 245 IPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDAD-ETKASDLLQVIRKAFGHALM 303
+P ++++D LP+ ++GK+D +L A I ++L Q + + L
Sbjct: 4199 VPLHWLWLDRLPLNANGKLDRKALPA---LDIGQLQSQAYLAPRNELEQTLATIWADVLK 4255
Query: 304 VEEVLHHDNFFTMGGNSIAAAHVAH------NLGIDMRLIYNFPTPSKL 346
VE V HDNFF +GG+S+ A +A + +R ++ T +L
Sbjct: 4256 VERVGVHDNFFELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEEL 4304
|
Length = 4334 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 3e-31
Identities = 92/345 (26%), Positives = 158/345 (45%), Gaps = 45/345 (13%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
SL + V GE +P + ++ + + + N YG TE T + C +
Sbjct: 3352 SLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC----GGDAVCEAP 3407
Query: 79 SVPIGLPISNCDIVLVESDTVKPDE----GEIYAGGLCLSNGYF-----SESTFMPSEYV 129
PIG P++ I +++ + P GE+Y GG+ L+ GY + F+ +
Sbjct: 3408 YAPIGRPVAGRSIYVLDGQ-LNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFS 3466
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
G + Y RTGD AR G + +LGR D +KI G R+ L EIE L
Sbjct: 3467 ------------GSGGRLY-RTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARL 3513
Query: 190 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
HP V + V++ G LVA++V + + +++ +++ LP M+P +
Sbjct: 3514 LQHPSVREAVVLARDGAGGKQ-LVAYVVPADP---QGDWRETLRDHLAASLPDYMVPAQL 3569
Query: 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA--SDLLQVIRKAFGHALMVEEV 307
+ + ++P+ +GKVD +L A+ + E A S++ Q + + L VE+V
Sbjct: 3570 LVLAAMPLGPNGKVDRKALP-----DPDAK-GSREYVAPRSEVEQQLAAIWADVLGVEQV 3623
Query: 308 LHHDNFFTMGGNSIAAAHV------AHNLGIDMRLIYNFPTPSKL 346
DNFF +GG+S+ A V + L + +R + + PT ++L
Sbjct: 3624 GVTDNFFELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAEL 3668
|
Length = 3956 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 1e-29
Identities = 100/348 (28%), Positives = 165/348 (47%), Gaps = 54/348 (15%)
Query: 4 VLPALQSQHNM-------HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEV 56
VL A S H +SLK +V GE LP D+ ++F + + NLYG TE
Sbjct: 3290 VLHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPA---DLQQQVFAGLPLYNLYGPTEA 3346
Query: 57 SGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE----GEIYAGGLC 112
+ T++ C +VPIG PI+N +++ +++P GE+Y GG
Sbjct: 3347 TITVTHWQCVE-------EGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEG 3398
Query: 113 LSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167
L+ GY + F+P +V G + Y RTGD AR G + ++G
Sbjct: 3399 LARGYHNRPGLTAERFVPDPFVP-------------GERLY-RTGDLARYRADGVIEYIG 3444
Query: 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 227
R D +KI G R+ L EIE L HP V + V++ + LVA++V +++
Sbjct: 3445 RVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQ----LVAYVVPEDEAGDLR- 3499
Query: 228 FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKA 287
++K+ + + LP M+P +F++ +P+T +GK+D +L + + + A
Sbjct: 3500 --EALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQQDYVA---PV 3554
Query: 288 SDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV---AHNLGI 332
++L + + + L +E+V DNFF +GG+SI + V A GI
Sbjct: 3555 NELERRLAAIWADVLKLEQVGLTDNFFELGGDSIISLQVVSRARQAGI 3602
|
Length = 5163 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 79/257 (30%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
L + GE LP+ + + FP +I N YG TE + T + IL
Sbjct: 259 HLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQ--EIL--DQYP 314
Query: 79 SVPIGL--PISNCDIVLVESDTV-KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
+PIG P N I+ E + + + ++GEI G +S GY + P + +
Sbjct: 315 RLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNN----PEKTAEAFF-- 368
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
S Q +RTGD A I G L + GR D IK++G R+ LE+IE LR +
Sbjct: 369 ------SHEGQPAYRTGD-AGTITDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYI 421
Query: 196 VDTAVVSHKHQGELVI-LVAFIVLKEKKTSSEIFLSS-IKSWVSSKLPLAMIPNRFVFMD 253
VV ++ V L+A IV + + E L+ IK + LP MIP +F++ D
Sbjct: 422 ESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRD 481
Query: 254 SLPMTSSGKVDYASLSA 270
LP+T++GK+D +L+
Sbjct: 482 QLPLTANGKIDRKALAE 498
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-27
Identities = 85/317 (26%), Positives = 143/317 (45%), Gaps = 37/317 (11%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+SL+ L GE LP + + + + P + + N YG TE + + T++ C+
Sbjct: 1388 TSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQ-------AEDG 1440
Query: 78 KSVPIGLPISN--CDIVLVESDTVKPD-EGEIYAGGLCLSNGYF-----SESTFMPSEYV 129
+ PIG P+ N C ++ E + + P GE+ GG L+ GY + F+P
Sbjct: 1441 ERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG 1500
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
+ G++ Y RTGD AR G L +LGR D+ +K+ G R+ EEI+ L
Sbjct: 1501 E------------DGARLY-RTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARL 1547
Query: 190 RGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
P V AV+ E + + E +K+ ++++LP M+P +
Sbjct: 1548 LAQPGVAQAAVLVR----EGAAGAQLVGYYTGEAGQEAEAERLKAALAAELPEYMVPAQL 1603
Query: 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLH 309
+ +D +P+ SGK+D +L +H T +L Q I + L + V
Sbjct: 1604 IRLDQMPLGPSGKLDRRALPEPVWQQ--REHVEPRT---ELQQQIAAIWREVLGLPRVGL 1658
Query: 310 HDNFFTMGGNSIAAAHV 326
D+FF +GG+S+ A +
Sbjct: 1659 RDDFFALGGHSLLATQI 1675
|
Length = 4334 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-27
Identities = 93/332 (28%), Positives = 141/332 (42%), Gaps = 41/332 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+++ + GE L I + F N YG TE C P LE
Sbjct: 2448 LPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTETV--VMPLAC-LAPEQLEEGA- 2503
Query: 78 KSVPIGLPIS-------NCDIVLVESDTVKPDEGEIYAGGLCLSNGY-----FSESTFMP 125
SVPIG + + D+ LV GE+Y GG L+ GY + F+
Sbjct: 2504 ASVPIGRVVGARVAYILDADLALVPQGAT----GELYVGGAGLAQGYHDRPGLTAERFVA 2559
Query: 126 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 185
+ + G + Y RTGD R G + ++GR D +KI G R+ L EI
Sbjct: 2560 DPFA------------ADGGRLY-RTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEI 2606
Query: 186 EHTLRGHPDVVDTAVVSHKHQG--ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 243
E L HP V + V++ +L + V + + ++K+ + +LP
Sbjct: 2607 ESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHLKQQLPDY 2666
Query: 244 MIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALM 303
M+P + +DSLP+T++GK+D +L A A + S+L Q + + + L
Sbjct: 2667 MVPAHLILLDSLPLTANGKLDRRALPAP---DPELNRQAYQAPRSELEQQLAQIWREVLN 2723
Query: 304 VEEVLHHDNFFTMGGNSIAAAHV---AHNLGI 332
VE V DNFF +GG+SI + V A LGI
Sbjct: 2724 VERVGLGDNFFELGGDSILSIQVVSRARQLGI 2755
|
Length = 4334 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-27
Identities = 69/253 (27%), Positives = 111/253 (43%), Gaps = 32/253 (12%)
Query: 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
+ SSL++L +GE L ++ + IL++YG TE I
Sbjct: 287 YDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGM----------GFIAGR 335
Query: 75 STLKSVPIGLPISNCDIVLV--ESDTVKPDEGEIYAGGL--CLSNGYFSESTFMPSEYVK 130
+K+ GLP+ + V E + V P GE+ ++ Y+++ Y
Sbjct: 336 PPVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGELVVRLPWPGMALTYWNDPERYKEAYFG 395
Query: 131 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR 190
++RTGD+A R + G GR D IK++G+R+ EIE L
Sbjct: 396 ----------------RWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLL 439
Query: 191 GHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250
HP V + AVV G+ I++AF+VL +E+ I+ V+ + IP +
Sbjct: 440 AHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNEL-AEEIRRHVARNIGPHAIPRKIR 498
Query: 251 FMDSLPMTSSGKV 263
F+D LP T+SGK+
Sbjct: 499 FVDELPKTASGKI 511
|
Length = 528 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-26
Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 29/251 (11%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SSL+L V +GE LP + +LF + IL+ GSTE+ + P ++ T
Sbjct: 277 LSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEM----LHIFLSNRPGAVKYGT 331
Query: 77 LKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHN 133
G P+ ++ LV+ D V E GE++ G + GY+ N
Sbjct: 332 -----SGKPVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYW--------------N 372
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
G + RTGD R + G + GR D +K++G ++ E+E L HP
Sbjct: 373 RREKTRETFVGE--WTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHP 430
Query: 194 DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
V++ AVV + + L AF+VLK+ S + +K +V KL P F+D
Sbjct: 431 AVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVD 490
Query: 254 SLPMTSSGKVD 264
LP T++GK+
Sbjct: 491 ELPKTATGKIQ 501
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 3e-23
Identities = 56/181 (30%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLF-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
L+ L+ GE LPL++ + +L +LNLYG TE + D F
Sbjct: 484 CERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAEL------ 537
Query: 76 TLKSVPIGLPISNCDI-VLVESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
VPIG P++N + +L + P GE+Y GL L+ GY + ++
Sbjct: 538 -ESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI--- 593
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+ +RTGD AR + G L +LGRKD +KI G R+ L EIE L
Sbjct: 594 ------------ALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQ 641
Query: 193 P 193
P
Sbjct: 642 P 642
|
Length = 642 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 69/252 (27%), Positives = 103/252 (40%), Gaps = 31/252 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL+ + G +P + I + FP I YG TE SG T +
Sbjct: 117 SSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTV- 175
Query: 78 KSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
G P+ ++ +V+ D V P E GEI G + GY++ P +
Sbjct: 176 -----GRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYN----DPEATAEAI-- 224
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ + TGD + G L +GR I G+ + EIE L HP
Sbjct: 225 ---------DADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPA 275
Query: 195 VVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
V + AVV + GE+V AF+VLK T +E + ++ +L +P F+
Sbjct: 276 VAEAAVVGVPDERLGEVV--AAFVVLKPGATLTE---EELIAFCRGRLARFKVPRYVRFV 330
Query: 253 DSLPMTSSGKVD 264
D LP T+SGK+
Sbjct: 331 DELPRTASGKIQ 342
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 2e-21
Identities = 70/261 (26%), Positives = 113/261 (43%), Gaps = 48/261 (18%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SSL+++ + G L + + + + ++G E + T D P + M T
Sbjct: 254 LSSLRVIQVGGAPLSPELARRVEERL-GCPLQQVFGMAEGLVNYTRLD--DPPDV-IMRT 309
Query: 77 LKSVPIGLPISNCDIVLV--ESDTVKPD--EGEIYAGGLCLSNGYFS--ESTFMPSEYVK 130
G PIS D + + + P GE+ G GY+ E
Sbjct: 310 -----QGRPISPADEIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPE---------- 354
Query: 131 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEH 187
HN + ++RTGD R G +GR KD +IN G++++ EEIE+
Sbjct: 355 -HNAR------AFTDDGFYRTGDLVRIDADGYYRVVGRIKD---QINRGGEKISPEEIEN 404
Query: 188 TLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM- 244
L HP V D AVV + GE + AF+V + + L+ +++++ + LA
Sbjct: 405 LLLSHPAVADAAVVGMPDEVLGERI--CAFVVPRGGAAPT---LAELRAFLREQ-GLAKF 458
Query: 245 -IPNRFVFMDSLPMTSSGKVD 264
+P+R +DSLP+T GKVD
Sbjct: 459 KLPDRLEVVDSLPLTPVGKVD 479
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 9e-21
Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 205
+ TGD RR G L F GR D IK +G R+ EIE L HP V++ AVV
Sbjct: 317 WLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPE 376
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 265
+GE+V AF+VL E S+ + ++ V S+L P F+D LPMT++GK+
Sbjct: 377 RGEIV--KAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRR 434
Query: 266 ASL 268
L
Sbjct: 435 REL 437
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-20
Identities = 65/247 (26%), Positives = 110/247 (44%), Gaps = 25/247 (10%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
S++L V +GE LP + + ++ I IL+ GSTEV F R P T
Sbjct: 208 RSVRLCVSAGEALPAGLAERWAEAT-GIEILDGIGSTEVL---HIFISNR-PGAARPGTT 262
Query: 78 KSVPIGLPISNCDIVLVESDTVKPD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
+P +V V G+++ G L+ GY++ +P + + +
Sbjct: 263 GRP---VPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWN----LPEKTQRTLRDG- 314
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 196
+ RTGD R G + GR D IK++GQ ++ E+E L HP V
Sbjct: 315 -----------WLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVA 363
Query: 197 DTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLP 256
+ AVV+ + LV L AF+V + + ++ + ++ +L P + F+D+LP
Sbjct: 364 EAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLP 423
Query: 257 MTSSGKV 263
T++GK+
Sbjct: 424 RTATGKL 430
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 4e-20
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 35/260 (13%)
Query: 9 QSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRL 68
+ P L+ + + LP ++ D + K F + +L YG TE +
Sbjct: 109 AKPNPGKPPPRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIA------- 160
Query: 69 PSILEMSTLKSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMP 125
+ L K +G P + ++ +++ D + P + GEI G ++ GY
Sbjct: 161 SNPLPPLVRKPGSVGRP-AGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYL------- 212
Query: 126 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 185
NN N +FRTGD + G L GR I G++++ E+
Sbjct: 213 -------NNPEANREA--FRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREV 263
Query: 186 EHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 243
E L HP V + V V + GE V A +VL+ S++ + ++ + +L
Sbjct: 264 EEVLLRHPAVAEAVVFGVPDELYGEEV--AAAVVLRAD---SKVTIEELRDFARKRLAAF 318
Query: 244 MIPNRFVFMDSLPMTSSGKV 263
+P + +F+D+LP ++GK+
Sbjct: 319 KVPKKILFVDALPKGATGKI 338
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 6e-20
Identities = 72/263 (27%), Positives = 110/263 (41%), Gaps = 39/263 (14%)
Query: 8 LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR 67
L+S SSL+ ++L G +P S+ + + I + YG TE +
Sbjct: 180 LESLGA-RWLSSLRAVLLGGAPIPPSLLEQARQR--GIPLYPTYGMTETASQVA-----T 231
Query: 68 LPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSE 127
L ++ L SV G P+ ++ +V P +GEI G L GY
Sbjct: 232 LKPDDFLAKLGSV--GKPLPGRELRIVN-----PQDGEILVRGPSLFLGY---------- 274
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
L + + +F TGD G L LGR+D I G+ + EEIE
Sbjct: 275 ---LPQGGL---TPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGENIYPEEIEA 328
Query: 188 TLRGHPDVVDTAVV--SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245
L HP V + AVV G+ VAF+V + S E ++++++ KL
Sbjct: 329 VLLQHPAVEEAAVVGVPDDEWGQRP--VAFVVPNDDPVSVE----ELQAFLADKLAKYKR 382
Query: 246 PNRFVFMDSLPMTSSGKVDYASL 268
P R+ + LP +SGK+D A+L
Sbjct: 383 PKRWYPLPELPRNASGKIDRAAL 405
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 5e-19
Identities = 97/381 (25%), Positives = 163/381 (42%), Gaps = 84/381 (22%)
Query: 36 DIISK--------LFPNISILNLYGSTEVSGDCTYFDCKRL---PSILEMSTLKSV-PIG 83
DI++K L N+ I+N+YG+TE +YF+ + L+ LK V P G
Sbjct: 539 DILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLK--NLKDVMPAG 596
Query: 84 LPISNCDIVLV-ESDTVKP----DEGEIY--AGGLCLSNGY-----FSESTFMPSEYV-K 130
+ N +++V +D + + GEIY AGG L+ GY + F+ + +V
Sbjct: 597 KGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGG--LAEGYLGLPELNAEKFVNNWFVDP 654
Query: 131 LHNNSICNCSVSCGSQTYF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
H + + + + RTGD R + G++ GR D +KI G R+ L
Sbjct: 655 SHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELG 714
Query: 184 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS------------ 231
EI+ L HP V + + + + E LV++IV ++K E F S
Sbjct: 715 EIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQDKSDELEEFKSEVDDEESSDPVVK 774
Query: 232 -----------IKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISA-- 278
I+ ++ KLP IP V + LP+ +GKVD +L + ++A
Sbjct: 775 GLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVA 834
Query: 279 ---QHDADETKASDLLQVIRKAFGHALMVEEVLHH--------DNFFTMGGNSIAAAHV- 326
A + + ++ + IR + E+L + D+FF +GG+SI A +
Sbjct: 835 KNRSASAADEEFTETEREIRDLW------LELLPNRPATISPDDSFFDLGGHSILATRMI 888
Query: 327 -----AHNLGIDMRLIYNFPT 342
N+ + + LI+ PT
Sbjct: 889 FELRKKLNVELPLGLIFKSPT 909
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 5e-19
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Query: 146 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+TYF TGD ARR + G LGR D I ++G R+ E+E L HP V +
Sbjct: 455 KTYFSKFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEA 514
Query: 199 AVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSL 255
AVV + GE + AF+ LK+ S+ +K V ++ P+A P+ +F+ L
Sbjct: 515 AVVGKPDEVKGE--AIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIAT-PDEIIFVPGL 571
Query: 256 PMTSSGKV 263
P T SGK+
Sbjct: 572 PKTRSGKI 579
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 70/274 (25%), Positives = 106/274 (38%), Gaps = 65/274 (23%)
Query: 15 HVPSSLKLLVLSGEVLPLSMW----DIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
H SSL++L +GE W + + I+N G TE+SG
Sbjct: 218 HDLSSLRVLGSTGEPWDPESWLWLFERVGG--GRAPIINYSGGTEISG-----------G 264
Query: 71 ILEMSTLKSV-PIGL--PISNCDIVLVESD--TVKPDEGEIYAGGLCLSN-------GYF 118
IL ++ + P P D +V+ D V+ + GE L + G++
Sbjct: 265 ILGNVPIRPIKPCSFNGPSPGMDADVVDEDGRPVRGEVGE-----LVVRAPWPGMTRGFW 319
Query: 119 SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRT-------GDFARRIQSGDLVFLGRKDR 171
+ P Y++ TY+ GD+A + G LGR D
Sbjct: 320 RD----PERYLE----------------TYWSRFPGVWVHGDWALVDEDGYWYILGRSDD 359
Query: 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH--QGELVILVAFIVLKEKKTSSEIFL 229
TIK+ G+R+ EIE L HP V + A + +GE +V F+VLK T S
Sbjct: 360 TIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGE--AIVCFVVLKPGVTPSAALE 417
Query: 230 SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+ + V L P F+ LP T +GK+
Sbjct: 418 AELADHVGDALGKPFRPREVHFVSDLPKTRNGKI 451
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-18
Identities = 69/259 (26%), Positives = 114/259 (44%), Gaps = 35/259 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSLK++ G LP ++ + + L + YG TE + CT+F+
Sbjct: 199 SSLKVVGGGGAALPPAVAERLKALT-GLLYEEGYGLTE-THTCTHFNP--------PDRP 248
Query: 78 KSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHN 133
K +G+P+ D +++ +T + +EGEI G + GY++ P +
Sbjct: 249 KPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNR----PEATAE--- 301
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
+ + +FRTGD + G FL R R I ++G ++ E+E L HP
Sbjct: 302 -----SFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVEALLYQHP 356
Query: 194 DVVDTAVVS--HKHQGELVILVAFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
V++ V+ +GE+V AF+VLK + +E I W ++ P
Sbjct: 357 AVLEVCVIGRPDPRRGEVV--KAFVVLKPDYRGKVTE---EDIIEWCRERMAAYKYPRII 411
Query: 250 VFMDSLPMTSSGKVDYASL 268
F+D LP T+SGKV + L
Sbjct: 412 EFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-18
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 42/243 (17%)
Query: 30 LPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 89
LP ++W + F + ++ YG TE S G P
Sbjct: 206 LPAAIWPAFEERF-GVKLVEGYGMTETG--VPIIAP--GDPAPPGS------CGRPRPGV 254
Query: 90 DIVLVESDT--VKPDE-GEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSC 143
++ +V+ D V P E GE+ + GY+ MP K N
Sbjct: 255 EVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYG----MPEATAKAWRNG-------- 302
Query: 144 GSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--V 201
+F TGD RR + G L F+ RK I+ G+ ++ E+E + HP V + AV V
Sbjct: 303 ----WFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVVAV 358
Query: 202 SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSS 260
+ + V A +VL+ +T ++ + +LP M+P R++ F+D LP T +
Sbjct: 359 PSELGEDEV--KAVVVLRPGETLDP---EALLEFCRDRLPYFMVP-RYIEFVDELPKTPT 412
Query: 261 GKV 263
K+
Sbjct: 413 EKI 415
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-18
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH-- 205
Y+ TGD ARR + G + GR D I ++G R+ EIE L HP V + AVV
Sbjct: 476 YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDI 535
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 263
+G+ + AF+ LK+ + ++ V ++ P+A P++ F+ LP T SGK+
Sbjct: 536 KGQ--AIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAK-PDKIRFVPGLPKTRSGKI 591
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 4e-18
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 33/254 (12%)
Query: 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
+L+ ++L G +P + I + I YG TE T + L + +
Sbjct: 216 GHNENLRKILLGGSAIPAPL--IEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPD- 272
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
+G P++ +I + + K GEI G L GY E
Sbjct: 273 -------VGRPLAGREIKIKVDN--KEGHGEIMVKGANLMKGYLY-----QGELTPAFEQ 318
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
Q +F TGD G L LGR+D I G+ + EEIE L HP
Sbjct: 319 -----------QGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPG 367
Query: 195 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
+ + VV + VA+IV + S+I + + ++++ KL +P F +D
Sbjct: 368 IQEAVVVPKPDAEWGQVPVAYIVSE-----SDISQAKLIAYLTEKLAKYKVPIAFEKLDE 422
Query: 255 LPMTSSGKVDYASL 268
LP +SGK+ L
Sbjct: 423 LPYNASGKILRNQL 436
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 1e-17
Identities = 88/297 (29%), Positives = 132/297 (44%), Gaps = 47/297 (15%)
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
S L S P IV +S V D GEI+A G +++GY+ +V+
Sbjct: 367 SVLMSCGRSQPGHAVLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEH- 425
Query: 133 NNSICNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTL 189
+T+ RTGD F R G+L GR KD I + G + ++IE T+
Sbjct: 426 -----------DGRTWLRTGDLGFLRD---GELFVTGRLKDMLI-VRGHNLYPQDIEKTV 470
Query: 190 RGHPDVVD---TAVVSHKHQGELVILVAFIVLK--EKKTSSEIFLSSIKSWVSSKLPLAM 244
+VV A + HQGE I +A + + +K + + SI+ V+ A
Sbjct: 471 EREVEVVRKGRVAAFAVNHQGEEGIGIAAEISRSVQKILPPQALIKSIRQAVAEACQEA- 529
Query: 245 IPNRFVFMD--SLPMTSSGKV---------DYASLSASTSFTISAQHDADETKAS--DLL 291
P+ + ++ +LP TSSGK+ SL + F +A +T AS +L
Sbjct: 530 -PSVVLLLNPGALPKTSSGKLQRSACRLRLADGSLDSYALFPALQAVEAAQTAASGDELQ 588
Query: 292 QVIRKAFGHALMVEEVLHHDNFFTMGGNSIAA----AHVAHNLGIDM--RLIYNFPT 342
I + L VE+V D+FF +GGNSIAA A + LGID+ R ++ PT
Sbjct: 589 ARIAAIWCEQLKVEQVAADDHFFLLGGNSIAATQVVARLRDELGIDLNLRQLFEAPT 645
|
Length = 4334 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-17
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 39/254 (15%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSG--DCTYFDCKRLPSILEMS 75
SSL+L + G LP+ + + + ++ YG TE S D +R
Sbjct: 242 SSLRLCISGGAPLPVEVAERFEEKT-GAPLVEGYGLTETSPVTTVNPLDGER-------- 292
Query: 76 TLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
K IGLP+ ++ +V+ + + P E GE+ G + GY++ P E ++
Sbjct: 293 --KPGSIGLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWN----RPEETAEVL 346
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+ + RTGD + G + RK I + G + EIE L H
Sbjct: 347 TD------------GWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYPREIEEVLYSH 394
Query: 193 PDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250
P V++ AV V ++GE V AF+VLKE + +E + ++ +L +P +
Sbjct: 395 PAVLEAAVVGVPDPYRGEAV--KAFVVLKEGASLTE---EELIAFCRERLAAYKVPRQVE 449
Query: 251 FMDSLPMTSSGKVD 264
F D LP ++ GK+
Sbjct: 450 FRDELPKSAVGKIL 463
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 2e-16
Identities = 69/265 (26%), Positives = 105/265 (39%), Gaps = 55/265 (20%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISK-----LFPNISILNLYGSTEVSGDCTYFDCKRLPSIL 72
SSL+ + SG +MW K L PN+++++ G++E G S
Sbjct: 135 SSLRAISSSG-----AMWSPEVKQGLLELLPNLALVDALGASETGG---------GGSS- 179
Query: 73 EMSTL-KSVPIGLPISNCDIVLVESDT--VKPDEGEI--YAGGLCLSNGYF-----SEST 122
+S + G D V+++ D V P GE+ A G + GY+ + T
Sbjct: 180 -VSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVPLGYYKDPEKTAKT 238
Query: 123 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 182
F Y GDFAR G + LGR I G+++
Sbjct: 239 F-----------------REIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEKVFP 281
Query: 183 EEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240
EE+E L+ HPDV D VV + G+ V VA + L+ L+ ++ L
Sbjct: 282 EEVEEALKAHPDVADALVVGVPDERWGQRV--VAVVQLRAGAGLD---LAELRDHCRQHL 336
Query: 241 PLAMIPNRFVFMDSLPMTSSGKVDY 265
+P V +D++P SGK DY
Sbjct: 337 AGYKLPRAIVVVDTVPRAPSGKADY 361
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 3e-16
Identities = 68/257 (26%), Positives = 109/257 (42%), Gaps = 43/257 (16%)
Query: 17 PSSLKLLVLSGEV-LPLSMWDIISKLFPNISILNLYGSTEVSGD--CTYFDCKRLPSILE 73
+L+L V SG LP+ + + + + ++L YG TE D +R P
Sbjct: 205 ARNLRLFV-SGSAALPVPVLERWEERTGH-TLLERYGMTETGMALSNPL-DGERRPG--- 258
Query: 74 MSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYV 129
+V GLP+ ++ +V+ D +P + GEI G + + Y++ P
Sbjct: 259 -----TV--GLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWN----KPEATA 307
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHT 188
+ +F+TGD + G LGR D IK G +++ EIE
Sbjct: 308 EAFT-----------EDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSALEIEEA 356
Query: 189 LRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
L HP V + AV+ GE V VA +V + + L+ +++W KL IP
Sbjct: 357 LLEHPGVAEVAVIGVPDPDWGEAV--VAVVVPEAGAA---LTLAELRAWAREKLAPYKIP 411
Query: 247 NRFVFMDSLPMTSSGKV 263
R + +D LP + GKV
Sbjct: 412 KRVIVVDELPRNAMGKV 428
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-16
Identities = 67/254 (26%), Positives = 102/254 (40%), Gaps = 32/254 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL+L++ G LP ++ + F I ++ YG TE S + L
Sbjct: 281 SSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVS---VLPPEDQLPGQWT 336
Query: 78 KSVPIGLPISNCDIVLVESD--TVKPDE---GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
K G P+ + +V+ D + PD GEI G L GY++ P +
Sbjct: 337 KRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWN----RPEATAETI 392
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+ + TGD + G L R I G+ + E+E L GH
Sbjct: 393 DGG------------WLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGH 440
Query: 193 PDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250
P V + AV V + GE VA +VLK T +++++ +L +P R
Sbjct: 441 PAVAEVAVIGVPDEKWGERP--VAVVVLKPGATLDA---KELRAFLRGRLAKFKLPKRIA 495
Query: 251 FMDSLPMTSSGKVD 264
F+D LP TS GK+
Sbjct: 496 FVDELPRTSVGKIL 509
|
Length = 521 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-16
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 50/260 (19%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYF---DCKRLPSILEM 74
SSL+L++ +P + + + F + + YG TE T D R
Sbjct: 115 SSLRLIIYGAAPMPAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLG---- 169
Query: 75 STLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYF-----SESTFMPS 126
SV G P+ ++ +V+ D + P E GEI G + GY+ +
Sbjct: 170 ----SV--GRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEAL--- 220
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+ TGD + G L + RK I G+ + E+E
Sbjct: 221 ------------------RDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVE 262
Query: 187 HTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244
+ L HP V D AV V + GE V VA +VL+ + + + ++ +L
Sbjct: 263 NVLLAHPAVADVAVIGVPDEEWGEAV--VAVVVLRP---GATLDAEELIAFCRERLAGYK 317
Query: 245 IPNRFVFMDSLPMTSSGKVD 264
+P F+D LP +SGK+
Sbjct: 318 VPKSVEFVDELPRNASGKIL 337
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-16
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 39/255 (15%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSLK + L + + FP + + YG TE S T +
Sbjct: 275 SSLKQIGSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCP-------VPEKDP 327
Query: 78 KSVPIGLPISNCDIVLVESDTVKPD----EGEIYAGGLCLSNGYFS--ESTFMPSEYVKL 131
K +G + N + +V+ +T + GE++ G + GY + E+T
Sbjct: 328 KPGSVGRLVPNVEAKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEAT--------- 378
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
+ + + TGD + G L + R IK G ++A E+E L
Sbjct: 379 --------AETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLS 430
Query: 192 HPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNR 248
HP++ D AV+ + + GE I +AF+V + SE + +V+ ++ P + +
Sbjct: 431 HPEIADAAVIPYPDEEAGE--IPMAFVVRQPGSELSE---DEVMQFVAKQVAPYKKV-RK 484
Query: 249 FVFMDSLPMTSSGKV 263
VF+D++P + SGK+
Sbjct: 485 VVFVDAIPKSPSGKI 499
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-15
Identities = 66/255 (25%), Positives = 102/255 (40%), Gaps = 36/255 (14%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
L+ V +GE L + + + K + ++I + YG TE + +
Sbjct: 198 DVRLREAVSAGEPLNPEVIERVKKAW-GLTIRDGYGQTETTA---------MIGNSPGQK 247
Query: 77 LKSVPIGLPISNCDIVLVESDTVKP--DEGEI------YAGGLCLSNGYFSESTFMPSEY 128
+K +G P+ +VL++ + + EGEI GL L GY + +
Sbjct: 248 VKPGSMGRPLPGYRVVLLDDEGKEIPVTEGEIALDLGDRPIGLML--GYMGDPEKTAA-- 303
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
Y+RTGD A R + G L F+GR D K + R++ E+E
Sbjct: 304 -AFRGG-------------YYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESA 349
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP V + AVV L + A+IVLK S + + V +L R
Sbjct: 350 LLEHPAVAEAAVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRR 409
Query: 249 FVFMDSLPMTSSGKV 263
F+ LP T SGK+
Sbjct: 410 IEFVGELPKTISGKI 424
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 3e-15
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 146 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+TYF TGD ARR + G GR D + ++G R+ EIE L HP V +
Sbjct: 475 KTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEA 534
Query: 199 AVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSL 255
AVV +G+ + AF+ LK + S+ +++WV ++ P+A P+ F L
Sbjct: 535 AVVGRPDDIKGQGI--YAFVTLKGGEEPSDELRKELRNWVRKEIGPIA-KPDVIQFAPGL 591
Query: 256 PMTSSGK 262
P T SGK
Sbjct: 592 PKTRSGK 598
|
Length = 637 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-15
Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 46/263 (17%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST- 76
SSL+ +V+ G LP S+ + + + + +++ +G TE S T + P ++++
Sbjct: 279 SSLRRVVVGGSALPRSLIEKLEERG--VEVIHAWGMTETSPLGTV--SRLKPHLVDLPEE 334
Query: 77 ----LKSVPIGLPISNCDIVLVESDTVK-P----DEGEIYAGGLCLSNGYF-SESTFMPS 126
L++ G P+ ++ +V+ + + P GE+ G ++ Y+
Sbjct: 335 EKLELRAK-QGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDPEK---- 389
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT---IKINGQRMALE 183
+ +FRTGD A + G ++ DR IK G+ ++
Sbjct: 390 -------------TEELTRDGWFRTGDVAVIDEDG---YIQITDRAKDVIKSGGEWISSV 433
Query: 184 EIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
E+E+ L HP V + AVV H+ GE +A +VLK +E + ++ K+
Sbjct: 434 ELENALMAHPAVAEAAVVGVPHEKWGERP--LAVVVLKPGAKVTE---EELLEHLAKKVA 488
Query: 242 LAMIPNRFVFMDSLPMTSSGKVD 264
+P+R VF+D +P TS GK D
Sbjct: 489 KWWLPDRVVFVDEIPKTSVGKFD 511
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 6e-15
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
++ TGD A + + G F+GR D IK +G R+ E+E L HP V + AVV
Sbjct: 308 WYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPV 367
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
++ AF+VL SE ++ V + P F++ LP T SGK+
Sbjct: 368 RGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKI 423
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 7e-15
Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 82 IGLPISNCDIVLVES--DTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC 139
+G P+ + ++E D + P G G L L G+ S M Y L N
Sbjct: 262 MGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPS----MFRGY--LGNEERYAS 315
Query: 140 SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTA 199
S G ++ TGD A R + G F+GR D IK G + E+E L HP V +
Sbjct: 316 SFVDG---WYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAG 372
Query: 200 VVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257
V+ GE+V AF+ L+ SE + ++ +L A+ P F+D+LP
Sbjct: 373 VIGKPDPVAGEIV--KAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPK 430
Query: 258 TSSGKV 263
T SGK+
Sbjct: 431 TRSGKI 436
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 39/255 (15%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
L+L +GE LP + F + I++ GSTE+ + LP + T
Sbjct: 277 QVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEM----LHIFLSNLPGDVRYGT 331
Query: 77 LKSVPIGLPISNCDIVLVE---SDTVKPDEGEIYAGGLCLSNGYF-----SESTFMPSEY 128
G P+ + LV D + GE+ G + Y+ + TF
Sbjct: 332 -----SGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQ---- 382
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
G T R+GD R G + GR D +K++G ++ EIE
Sbjct: 383 ---------------GEWT--RSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESA 425
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP V++ AVV + + L+ AFIVL+ + + +K V +L P
Sbjct: 426 LIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRW 485
Query: 249 FVFMDSLPMTSSGKV 263
VF+D LP T++GK+
Sbjct: 486 IVFVDDLPKTATGKI 500
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-14
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 83 GLPISNCDIVLV---ESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 138
G P+S D V V + + V P E GE+ G GY+ HN +
Sbjct: 361 GRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYR---------APEHNARAFD 411
Query: 139 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+ ++R+GD RR G LV GR I G+++A EE+E+ L HP V D
Sbjct: 412 ------ADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDA 465
Query: 199 AVVSHKHQ--GELVILVAFIVLKEKKTSS--------EIFLSSIKSWVSSKLPLAMIPNR 248
A+V+ + GE AFIV+KE + E L++ K +P+R
Sbjct: 466 ALVAMPDELLGEKS--CAFIVVKEPPLRAAQLRRFLRERGLAAFK-----------LPDR 512
Query: 249 FVFMDSLPMTSSGKVD 264
F+DSLP+T+ GK+D
Sbjct: 513 IEFVDSLPLTAVGKID 528
|
Length = 542 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 65/264 (24%), Positives = 113/264 (42%), Gaps = 36/264 (13%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
SL+ L SG +P + + PN + +YG TE + TY + + +
Sbjct: 277 SLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTE-AFRSTYLPPEEVDR-------R 328
Query: 79 SVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFS--EST---F--MPSEY 128
IG I N +++++ D P E GE+ G ++ GY++ E T F +P
Sbjct: 329 PDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFP 388
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
+LH + S GD RR + G L F+GR+D IK +G R++ E+E
Sbjct: 389 GELHLPELAVWS-----------GDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEV 437
Query: 189 LRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
V + V G+ ++LV E+ +++ + ++LP M+P
Sbjct: 438 AYATGLVAEAVAFGVPDPTLGQAIVLVV-----TPPGGEELDRAALLAECRARLPNYMVP 492
Query: 247 NRFVFMDSLPMTSSGKVDYASLSA 270
+LP ++GK+D +L+
Sbjct: 493 ALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 205
++ TGD R + G F+GR D I G R+ ++E L HP V + AVV
Sbjct: 318 WYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVVGVPDPL 377
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+GE+V AF+VLKE S+ ++ +V +L P F+ +LP T SGK+
Sbjct: 378 RGEIV--KAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSGKI 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 1e-13
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 32/195 (16%)
Query: 83 GLPISNCDIVLVESDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 141
G P+S D V V D P GE G+ L+ G ++ + + HN + +
Sbjct: 354 GRPMSPDDEVRVVDDHGNPVAPGET---GMLLTRGPYTFRGYYKAPE---HNAAAFD--- 404
Query: 142 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 201
++ ++ TGD R G +V +GR I G+++A EEIE+ L HP V D A+V
Sbjct: 405 ---AEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALV 461
Query: 202 SHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM------IPNRFVFMD 253
S + GE AFIV+++ ++K+ + +P+R F+D
Sbjct: 462 SMPDELLGEKS--CAFIVVRDP---------ALKAAQLRRFLRERGLAEYKLPDRVEFVD 510
Query: 254 SLPMTSSGKVDYASL 268
SLP+T+ GKVD +L
Sbjct: 511 SLPLTAVGKVDKKAL 525
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 54/220 (24%), Positives = 82/220 (37%), Gaps = 36/220 (16%)
Query: 50 LYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPI---GLPIS---NCDIVLVESDTVKPD- 102
LYGS+EV L ++ + SV I G P S + + PD
Sbjct: 325 LYGSSEVQA---------LVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDG 375
Query: 103 -EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 161
GEI L GY L N +++ YFRTGD G
Sbjct: 376 ESGEIEIRAPSLMRGY-------------LDNPDATARALT--DDGYFRTGDLGYTRGDG 420
Query: 162 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 221
V+ R ++++ G + EIEH L P V VV G+ V VAF++ +
Sbjct: 421 QFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVP-VAFVIPTDG 479
Query: 222 KTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSG 261
+ E + + + L +P R +++ P+T S
Sbjct: 480 ASPDE---AGLMAACREALAGFKVPARVQVVEAFPVTESA 516
|
Length = 540 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 65/256 (25%), Positives = 104/256 (40%), Gaps = 40/256 (15%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL+++ L + + + K FPN +I YG TE T
Sbjct: 263 SSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTP-------PGDEKP 315
Query: 78 KSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFS--ESTFMPSEYVKL 131
SV G + N + +V+ D + P+E GE+ G + GY + E+T
Sbjct: 316 GSV--GRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEAT--------- 364
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
+ + TGD + G+ + RK IK G ++ E+E L
Sbjct: 365 --------KETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGYQVPPAELEAVLLE 416
Query: 192 HPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNR 248
HP V D AV + + GEL A++VLK +E +K +V+ K+ +
Sbjct: 417 HPKVADAAVIGIPDEVAGELP--RAYVVLKPGSKLTE---QEVKDYVAKKVAKYKQLRGG 471
Query: 249 FVFMDSLPMTSSGKVD 264
VF+D +P + SGK+
Sbjct: 472 VVFVDEIPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 74/269 (27%), Positives = 111/269 (41%), Gaps = 52/269 (19%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SL+ +V+ G+ S++ K FP+I + YG+TE S T S
Sbjct: 299 PSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINT--------VNSPK 350
Query: 78 KSVPIGLPISNCDIVLVESDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
+G+PI D+++V +T P GE GL L+ G T + S Y L +
Sbjct: 351 HESCVGMPIRGMDVLIVSEETKVPVSSGET---GLVLTRG-----TSLFSGY--LGEDFG 400
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR---GHP 193
V G +T++ TGD + G+L GR R +KI + ++LE +E L G
Sbjct: 401 QG-FVELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQN 459
Query: 194 DVVDT-AVVSHKHQGELVILVAFI-----------VLKEKKTSSEIFLSSIKSWVSSKLP 241
+V GE V L F +LK KTSS + +S
Sbjct: 460 AADHAGPLVVCGLPGEKVRLCLFTTFPTSISEVNDILKNSKTSSILKISYHHQ------- 512
Query: 242 LAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
++S+PM +GK DY SL+A
Sbjct: 513 ----------VESIPMLGTGKPDYCSLNA 531
|
Length = 539 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 7e-13
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 32/205 (15%)
Query: 77 LKSVPI--GLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVK 130
L S P+ GLP+ + + + +T + EGEI L GY+
Sbjct: 382 LLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYW------------ 429
Query: 131 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR 190
N + TGD + + G L +LGR+ +K+NG + E+E L
Sbjct: 430 --NKPEATAEALRDG--WLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLG 485
Query: 191 GHPDVVDTAVV--SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN- 247
HP V+ +AVV +G++ VAF+ LK + +++++W + + +P
Sbjct: 486 QHPAVLGSAVVGRPDPDKGQVP--VAFVQLKPGADLTA---AALQAWCRENMAVYKVPEI 540
Query: 248 RFVFMDSLPMTSSGKVDYASLSAST 272
R V D+LPMT++GKV L A
Sbjct: 541 RIV--DALPMTATGKVRKQDLQALA 563
|
Length = 567 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 9e-13
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHKH 205
+FRTGD R G L GRK I G+ ++ EIE L HP V + AVV +
Sbjct: 317 WFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDER 376
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 263
GE V A +V + + L+ + ++++ L P R +D+LP T SGKV
Sbjct: 377 LGERV--CAVVVP---APGASLTLAELTEHLAAQGLAKQKWPERLEVVDALPRTPSGKV 430
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 71/350 (20%), Positives = 113/350 (32%), Gaps = 113/350 (32%)
Query: 502 DAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561
DA+ LW + L+ R+ S V AD V VG KG++ LD G W + EV
Sbjct: 81 DAETGKRLWRVDLDERL--SGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL 138
Query: 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621
P+V + ++ V +
Sbjct: 139 SPPLVA--------------------------------------------NGLVVVRTND 154
Query: 622 GRLTAISVKALPFHT---LWLHELEVPAF---ASLCITSANRHVICCLVDGHVVALD-SS 674
GRLTA+ T LW + PA S A+ V+ G +VAL+ +
Sbjct: 155 GRLTALDAA-----TGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALNLQT 209
Query: 675 GSIIWRCR----------------TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718
G +W R G P+ G QV S G + + + SG
Sbjct: 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGG--------QVYAVSYQGRVAALDLRSG 261
Query: 719 NLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKE 776
+LW + S D + + + G + L +G E
Sbjct: 262 RVLWKRDASSYQGPAVD-----------------DNRLYVTDADGVVVALDRR---SGSE 301
Query: 777 NQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHL 826
D EL+ ++P ++GG + VG + Y++ ++ E
Sbjct: 302 LWKND---------ELKYRQLTAPAVLGGYLVVGDFEGYLHWLSREDGSF 342
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-12
Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 43/268 (16%)
Query: 8 LQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCT--YFDC 65
LQ SSL+ + LP+ + + + ++ YG TE +G
Sbjct: 112 LQVPLGDADISSLRYALTGAAPLPVEVARRFEAV-TGVPVVEGYGMTEGTGVSAINPRGG 170
Query: 66 KRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDE------GEIYAGGLCLSNGYFS 119
R SV + LP + + +++ + G + G + GY +
Sbjct: 171 PR--------RPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYLN 222
Query: 120 ESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQ 178
++ HN + TGD R G L GR KD I+ G
Sbjct: 223 DA----------HNAGARL------EDGWLNTGDLGRIDADGYLWLTGRAKDLIIR-GGH 265
Query: 179 RMALEEIEHTLRGHPDVVDTAVVSH--KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV 236
+ + IE L HP V A V + GEL VA++ LK T +E + ++V
Sbjct: 266 NIDPQMIEEALLRHPAVALAAAVGRPDAYAGELP--VAYVQLKPGATVTE---GELLAFV 320
Query: 237 SSKLP-LAMIPNRFVFMDSLPMTSSGKV 263
+++P A +P +D+LP+T+ GK+
Sbjct: 321 KARIPERAAVPKAIYIIDALPLTAVGKI 348
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 55/190 (28%), Positives = 83/190 (43%), Gaps = 20/190 (10%)
Query: 82 IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSV 141
IG P+ CD L++ + K + GE+ G L G P+ + N + +
Sbjct: 319 IGKPVLFCDYELIDENKNKVEVGEV---GELLIRG--------PNVMKEYWNRP--DATE 365
Query: 142 SCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV 201
+ TGD AR + G + +GRK I G+ + E+E + DV + AVV
Sbjct: 366 ETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVV 425
Query: 202 SHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTS 259
+H GE+ I AFIV KK+SS + + L IP VF+ LP +
Sbjct: 426 GRQHVKWGEIPI--AFIV---KKSSSVLIEKDVIEHCRLFLAKYKIPKEIVFLKELPKNA 480
Query: 260 SGKVDYASLS 269
+GK+ A L
Sbjct: 481 TGKIQKAQLV 490
|
Length = 496 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 29/209 (13%)
Query: 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680
G + A+ LW +L A + + G +VALD ++G ++WR
Sbjct: 3 GVVAALDAATG--KVLWRVDLGGTALGGG-VAVDGGRLYVATGKGELVALDAATGKLLWR 59
Query: 681 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI-----TASAY 735
G I P V++ + +GS+Y+ + E+G LLW Y P ++S
Sbjct: 60 KDLSGEILGAP---TVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPA 116
Query: 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKEN-QSKDHMVQEFAKLELQG 794
I V + SSG + L TGK ++ + +++E
Sbjct: 117 IV-------------GDTVIVGFSSGKLVALDPK---TGKVLWEAPVAAPRGGSEIERLV 160
Query: 795 DIFSSPVMIGGRVFVGCRDDYIYCIALET 823
DI +PV+ GGRV+ + + L T
Sbjct: 161 DITGTPVVDGGRVYASSYQGRLVALDLAT 189
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 6e-12
Identities = 54/244 (22%), Positives = 86/244 (35%), Gaps = 43/244 (17%)
Query: 35 WDIISK-----LFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 89
W+ +K +FP + YG++E+S T + E S + +G P N
Sbjct: 265 WEAEAKEKIKNIFPYAKLYEFYGASELSF-VTA-------LVDEESERRPNSVGRPFHNV 316
Query: 90 DIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQ 146
+ + V+ E G +Y GY
Sbjct: 317 QVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNAD---------------- 360
Query: 147 TYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVV--SHK 204
+ D + G + +GR+ I G + EEIE L HP V + V+
Sbjct: 361 GWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDS 420
Query: 205 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264
+ GE VA I K T ++ KS+ +L IP + F+D +P T+SGK+
Sbjct: 421 YWGE--KPVAII--KGSATKQQL-----KSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIA 471
Query: 265 YASL 268
Sbjct: 472 RMEA 475
|
Length = 487 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 54/238 (22%), Positives = 92/238 (38%), Gaps = 38/238 (15%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
+ LW+V + + V L+V + + + DA +LW L G I
Sbjct: 14 KVLWRVDLGGTALGGGVAVDGG---RLYVATGKGELVALDAATGKLLWRKDLSGEI--LG 68
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC-----QPVVDAPRQLIWCGS 577
A VVV G +Y LD TG + W++Q P + ++ G
Sbjct: 69 APTVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPAIVGDTVIV--GF 126
Query: 578 HDHNLYALDFRNYRCVYKLPCGGS-----------IFGSPAIDEVHDVLYVASTSGRLTA 626
L ALD + + +++ P I G+P +D +Y +S GRL A
Sbjct: 127 SSGKLVALDPKTGKVLWEAPVAAPRGGSEIERLVDITGTPVVDG--GRVYASSYQGRLVA 184
Query: 627 ISVKALPFHT---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680
+ + T LW E+ + + + DG +VALD ++G+++W+
Sbjct: 185 LDL-----ATGKVLW--SREISSINGPAV--DGGLLFVVDDDGELVALDRATGAVLWK 233
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 63/291 (21%), Positives = 102/291 (35%), Gaps = 35/291 (12%)
Query: 474 VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL---EGRIECSAAVLADFSQ 530
+ A+P VL YL A+ ++LW + L G I A
Sbjct: 14 LGATP--VLAAGTDYLVAVGADLV-AVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGT 70
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK---CQPVVDAPRQLIWCGSHDHNLYALDF 587
V VG G I+ L+ TG + W++ G V + + I+ GS D LYALD
Sbjct: 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDA 128
Query: 588 RN--YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645
+ P + + +YV + G L A++ A W +E P
Sbjct: 129 STGTLVWSRNVGGSPYYASPPVVGD--GTVYVGTDDGHLYALN--ADTGTLKWTYETPAP 184
Query: 646 AFASLC----ITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPI--FAGPCTSFALP 698
S+ I S +V DG + AL++ G++ W + I A T
Sbjct: 185 LSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDG 244
Query: 699 SQVLIC------SRNGSIYSFEQESGNLLWEYSV-----GDPITASAYIDE 738
V + S G + + ++G L+W + G + +
Sbjct: 245 GPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGA 295
|
Length = 370 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 1e-11
Identities = 68/280 (24%), Positives = 110/280 (39%), Gaps = 43/280 (15%)
Query: 17 PSSLKLLVLSGEVLPLS--MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
P L L VLS P S + ++ FP IL +G TE+S + +
Sbjct: 287 PRDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGED-----AI 341
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHN 133
L SV +P +V + V E GEI L +GY+ N
Sbjct: 342 RKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYW--------------N 387
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
N G +F +GD R+ + G + + RK I G+ + E+E+ L HP
Sbjct: 388 NPEATAEAFAGG--WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHP 445
Query: 194 DVVDTAVV--SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251
D+V+ AV+ + + GE+ + VA + + + + L + +++ +L P
Sbjct: 446 DIVEVAVIGRADEKWGEVPVAVAAV----RNDDAALTLEDLAEFLTDRLARYKHPKALEI 501
Query: 252 MDSLPMTSSGKV-------DYASLS------ASTSFTISA 278
+D+LP +GKV Y + AS FT
Sbjct: 502 VDALPRNPAGKVLKTELRERYGACVNVERRSASAGFTERR 541
|
Length = 542 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 58/249 (23%), Positives = 99/249 (39%), Gaps = 33/249 (13%)
Query: 582 LYALDFRNYRCVYKLPCGGSIFGSP-AIDEVHDVLYVASTSGRLTAISVK--ALPFHTLW 638
+ ALD + ++++ GG+ G A+D LYVA+ G L A+ L LW
Sbjct: 5 VAALDAATGKVLWRVDLGGTALGGGVAVDG--GRLYVATGKGELVALDAATGKL----LW 58
Query: 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSF 695
+L + T A V+ DG + ALD +G ++W + P G +
Sbjct: 59 RKDLSGEILGAP--TVAGGVVVVVTADGSLYALDAETGKLLWSYQRSLPPLTLRGSSSPA 116
Query: 696 ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755
+ V++ +G + + + ++G +LWE V P S E L + + V
Sbjct: 117 IVGDTVIVGFSSGKLVALDPKTGKVLWEAPVAAPRGGSEI--ERLVDITGTPVVDGGRVY 174
Query: 756 ICTSSGSIHILRVNLDV-TGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDD 814
+ G + V LD+ TGK S++ + P + GG +FV D
Sbjct: 175 ASSYQGRL----VALDLATGKVLWSREISS------------INGPAVDGGLLFVVDDDG 218
Query: 815 YIYCIALET 823
+ + T
Sbjct: 219 ELVALDRAT 227
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-11
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 146 QTYF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
YF R GD+ + G ++ GR D T+ G R+ EI + P+V D+
Sbjct: 463 DAYFDTFPGVWRHGDWIKITPHGGVIIYGRSDATLNPGGVRIGTAEIYRVVEKIPEVEDS 522
Query: 199 AVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT 258
VV + + F+ L+E T + + I+S + + L +P + + +P T
Sbjct: 523 LVVGQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAALSPRHVPAEIIAVPDIPYT 582
Query: 259 SSGK 262
SGK
Sbjct: 583 LSGK 586
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 34/113 (30%), Positives = 58/113 (51%)
Query: 151 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELV 210
TGD R+ + G ++ R D I G +A E+E L HPDV + AV+ +
Sbjct: 369 TGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVPDEERGQ 428
Query: 211 ILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
I+ A IVL++ ++E+ ++ +V + + P F+D+LP T +GK+
Sbjct: 429 IVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQTGKI 481
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 3e-11
Identities = 69/282 (24%), Positives = 120/282 (42%), Gaps = 43/282 (15%)
Query: 6 PALQSQHNMHVPSSLKLLVLSGEVL--PLSMW--DIISKLFPNISILNLYGSTEVSGDCT 61
A +H++ SSL L L+GE L P + W D + K +++ Y TE T
Sbjct: 345 AAWLRKHDL---SSLHWLFLAGEPLDEPTAHWITDGLGK-----PVIDNYWQTE-----T 391
Query: 62 YFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDEGEIYA--GGL---CL 113
+ + L++ +K GLP+ + +++ T P+E + L CL
Sbjct: 392 GWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCL 451
Query: 114 SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173
S + ++ F+ + + S + + + D+ R + G LGR D I
Sbjct: 452 STVWGDDARFLKTYW-------------SHFKRPLYSSFDWGIRDEDGYTFILGRTDDVI 498
Query: 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE-----IF 228
+ G R+ EIE ++ HP V + AVV + + + V F +LKE ++ +
Sbjct: 499 NVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAV 558
Query: 229 LSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
+ + V +L P R F+ +LP T SGK+ S+ A
Sbjct: 559 ETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQA 600
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-11
Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 48/265 (18%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLP--SILEMS 75
SSL+L+V E LP + ++ + F I IL YG+TE S P S+
Sbjct: 259 SSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECS-----------PVISVNTPM 306
Query: 76 TLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYF--SESTFMPSEYV 129
K +G P+ ++ +V +T + + G + G + +GY E T SE
Sbjct: 307 GNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKT---SEVE 363
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM----ALEEI 185
L + ++ TGD + + G L +GR R KI G+ M A+EE+
Sbjct: 364 VLGD-------------GWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGE-MVSLTAVEEL 409
Query: 186 EHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245
+ + V + +GE ++L+ + E + ++ L +
Sbjct: 410 LSEILPEDSLHAAVEVPDEKKGEKIVLLTT----TEDLDPEELNAILREAGLPNL---AV 462
Query: 246 PNRFVFMDSLPMTSSGKVDYASLSA 270
P + + +D +P+ SGK DY L
Sbjct: 463 PRKILHVDEIPLLGSGKTDYRGLKK 487
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 62/254 (24%), Positives = 100/254 (39%), Gaps = 46/254 (18%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNIS--ILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SL+ SG + D++ I N Y +TE + + +
Sbjct: 313 SLRFAAASGSRMRP---DVVIAFMDQFGDVIYNNYNATEAG----------MIATATPAD 359
Query: 77 LKSVP--IGLPISNCDIVLVESDTVKPDEGE---IYAGGLCLSNGYFSESTFMPSEYVKL 131
L++ P G P +I +++ D + GE I+ +GY S ST
Sbjct: 360 LRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGST------KDF 413
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
H+ + +GD ++G L +GR D I G+ + E+E TL
Sbjct: 414 HDGFMA-------------SGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLAT 460
Query: 192 HPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
HPDV + AV V + G+ L AF+VLK + ++K V L +P
Sbjct: 461 HPDVAEAAVIGVDDEQYGQR--LAAFVVLKPG---ASATPETLKQHVRDNLANYKVPRDI 515
Query: 250 VFMDSLPMTSSGKV 263
V +D LP ++GK+
Sbjct: 516 VVLDELPRGATGKI 529
|
Length = 537 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 42/258 (16%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL+ +GE L +++ K I ++ +G TE T +I +
Sbjct: 301 SSLRYCTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTE----TTL-------TIATFPWM 348
Query: 78 KSVP--IGLPISNCDIVLVESD--TVKP-DEGEIY---AGG--LCLSNGYFSESTFMPSE 127
+ P +G P DI +++ D + + +EGEI + G L L GY+ +
Sbjct: 349 EPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEV 408
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
+ H+ Y+ TGD A + G L F+GR D IK +G R+ E+E
Sbjct: 409 W---HDG-------------YYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVES 452
Query: 188 TLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245
L HP V++ AV V +G++V A IVL + SE ++ V
Sbjct: 453 ALIQHPAVLECAVTGVPDPIRGQVV--KATIVLTKGYEPSEELKKELQDHVKKVTAPYKY 510
Query: 246 PNRFVFMDSLPMTSSGKV 263
P F+D LP T SGK+
Sbjct: 511 PRIIEFVDELPKTISGKI 528
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 8e-11
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 50/263 (19%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSL + G + S+ + + +L PN+ + + GS+E +G
Sbjct: 296 SSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSE-TGFGG----------SGTVAK 344
Query: 78 KSVPIGLPI----SNCDIVLVESDTVKPDEGEIYAGGLCLS----NGYF-----SESTFM 124
+V G P ++ + + V+P GEI G + GY+ + TF
Sbjct: 345 GAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEI--GWIARRGHIPLGYYKDPEKTAETF- 401
Query: 125 PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEE 184
+ Y GD AR G + LGR I G+++ EE
Sbjct: 402 -----PTIDG-----------VRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEE 445
Query: 185 IEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 242
+E L+ HPDV D VV + G+ V VA + L+E + +++ S L
Sbjct: 446 VEEALKAHPDVADALVVGVPDERWGQEV--VAVVQLREGARPDL---AELRAHCRSSLAG 500
Query: 243 AMIPNRFVFMDSLPMTSSGKVDY 265
+P F+D + + +GK DY
Sbjct: 501 YKVPRAIWFVDEVQRSPAGKADY 523
|
Length = 533 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 9e-11
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 205
+F +GD A G + R I G+ ++ E+E L HP V++ AVV+ +
Sbjct: 402 WFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEK 461
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
GE AF+VLK + +E + + KL +P F++ LP T++GK+
Sbjct: 462 WGETP--CAFVVLKPGASVTE---EELIEYCREKLAHFKVPKTVEFVE-LPKTATGKI 513
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 72/254 (28%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSLK++ +SG L + + F + + NLYGSTEV+ +I L
Sbjct: 323 SSLKIIFVSGSALSPELATRALEAFGPV-LYNLYGSTEVA----------FATIATPEDL 371
Query: 78 KSVP--IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSE-YVKL 131
P +G P + +++ + V G I+ G P E Y
Sbjct: 372 AEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGN------------GFPFEGYTDG 419
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
+ I + +S G YF D + G L GR D I G+ + E+E L G
Sbjct: 420 RDKQIIDGLLSSGDVGYF---D-----EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAG 471
Query: 192 HPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
HPDVV+ AV V + G+ L AF+V E +IK +V L +P
Sbjct: 472 HPDVVEAAVIGVDDEEFGQR--LRAFVVKAPGAALDE---DAIKDYVRDNLARYKVPRDV 526
Query: 250 VFMDSLPMTSSGKV 263
VF+D LP +GKV
Sbjct: 527 VFLDELPRNPTGKV 540
|
Length = 549 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 70/386 (18%), Positives = 133/386 (34%), Gaps = 73/386 (18%)
Query: 465 LWKVHM----ESCVDASPLVVLKDSDIY-LFVGSHSHKFICADAKRSSVLWEIKLEGRIE 519
LW + + +D +P+V +Y F +A ++WE L G+
Sbjct: 17 LWSKSVGNGGMAGIDLTPVVA--GDMVYAADANGQVSAF---NATTGKIIWETSLSGKGF 71
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW-TFQTCGEVKCQPVVDAPRQLIWCGSH 578
++ VG G +Y LD G W T + ++ P + I+ G+
Sbjct: 72 LGGTPAVGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQLLSPPTYADGK--IYVGTG 129
Query: 579 DHNLYALDFRNYRCVYKLPCGGSI-----FGSPAIDEVHDVLYVASTSGRLTAISVKALP 633
D LY + + V+ +P DV++V +G + A++
Sbjct: 130 DGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAY--DVVFVGDGNGTVVALNTGT-- 185
Query: 634 FHTLWLHELEVPAFASLCITSANRHV---ICCLVD----------GHVVALDS-SGSIIW 679
+W + P T R + + +V G++VALD SG +W
Sbjct: 186 GVDIWEFSVSEPRGR----TELPRMIDSSVTYVVVGGYLYSTSYQGYLVALDFESGQFLW 241
Query: 680 RCRTGGPIFAGPCTSFALP--SQVLICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAY 735
+ G TS + +V + GS+Y + +G+ LW +V +++ A
Sbjct: 242 SRKASGG------TSTSTDANGRVYVGDGEGSLYCLDASTGDELWSQTVLLGRVLSSPAI 295
Query: 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795
+ + G ++ L+ N D + +++
Sbjct: 296 ------------YVGVYIYVTDNAEGYLYCLKDN-----------DGLTVARVEVDYSQY 332
Query: 796 IFSSPVMIGGRVFVGCRDDYIYCIAL 821
I P + G ++ G D Y+Y +
Sbjct: 333 ILQGPAVSDGWLYYGTDDGYLYALTR 358
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-10
Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 30/255 (11%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE----VSGDCTYFDCKRLPSILE 73
SSL+ L L+GE L + I K + +++ + TE ++ +C + +
Sbjct: 345 SSLRALFLAGERLDSPTLEWIEKTL-GVPVIDHWWQTETGWPITANCVGLELLPIKP--- 400
Query: 74 MSTLKSVPIGLPISNCDIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
S K VP G + ++ + + P E G I L L G + KL+
Sbjct: 401 GSPGKPVP-GY---DVQVLDETGEELGPGELGNI-VIKLPLPPGCLLTLWGDDERFKKLY 455
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
N Y+ TGD + + G L +GR D I + G R++ E+E ++ H
Sbjct: 456 LNK---------FPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKH 506
Query: 193 PDVVDTAVVSHKH--QGELVILVAFIVLKEK-KTSSEIFLSSIKSWVSSKL-PLAMIPNR 248
PDV + AVV + +G+ + + +VLK+ K ++ + I + V ++ P+A
Sbjct: 507 PDVAECAVVGVRDELKGQ--VPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAA-FRN 563
Query: 249 FVFMDSLPMTSSGKV 263
VF+ LP T SGK+
Sbjct: 564 VVFVKRLPKTRSGKI 578
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 83 GLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SESTFMPSEYVKLHN 133
G P+ ++ +V+ +T + E GEI+ G ++ GY+ + TF
Sbjct: 358 GRPLPGHEVRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETF---------- 407
Query: 134 NSICNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLR 190
++ + RTGD F + G+L GR KD I I G+ ++IE T+
Sbjct: 408 ----GARLATDEGGWLRTGDLGF---LHDGELYVTGRLKDL-IIIRGRNHYPQDIEATVE 459
Query: 191 GHPDVVDT---AVVSHKHQG-ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
+ A S G E +++VA + + +I++ V+ + +A P
Sbjct: 460 RAHPALRPGAAAAFSVDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGVA--P 517
Query: 247 NRFVF--MDSLPMTSSGKV 263
V +LP TSSGK+
Sbjct: 518 ADVVLVRPGTLPKTSSGKI 536
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 63/335 (18%), Positives = 121/335 (36%), Gaps = 32/335 (9%)
Query: 506 SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565
S++ +L + + + A +V + + +G + W+
Sbjct: 2 STLSLLGRLFATLGATPVLAAGTDYLVAVGA-DLVAVANNTSGTLLWSVSLGSGGGGIYA 60
Query: 566 VDAP---RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVHDVLYVAST 620
AP ++ G+ D N++AL+ + P G+ P + +YV S
Sbjct: 61 GPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGKIYVGSW 119
Query: 621 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679
G+L A+ A +W + + + + V DGH+ AL+ +G++ W
Sbjct: 120 DGKLYAL--DASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKW 177
Query: 680 RCRTGGPIFAGPCTSFALPSQVLIC---SRNGSIYSFEQESGNLLWEYSVGDPITASAYI 736
T P+ S A+ S + +G +Y+ E G L W V I +A
Sbjct: 178 TYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAIS 237
Query: 737 DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD- 795
+ + S +L ++ D TG+ S A +QG
Sbjct: 238 TTP----AVDGGPVYVDGGVYAGSYGGKLLCLDAD-TGELIWSFP------AGGSVQGSG 286
Query: 796 IFSSPVMIG-GRVFVGCRDDY------IYCIALET 823
++++PV G+V++G D+ +Y +A
Sbjct: 287 LYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVP 321
|
Length = 370 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-10
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 113 LSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172
+ GYF MP + V+ N +F TGD R G F+ R
Sbjct: 382 FATGYFG----MPEKTVEAWRN------------LWFHTGDRVVRDADGWFRFVDRIKDA 425
Query: 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ-GELVILVAFIVLKEKKTSSEIFLSS 231
I+ G+ ++ E+E L HP V AV + GE ++ A +VL++ T+ E ++
Sbjct: 426 IRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAA-VVLRD-GTALE-PVAL 482
Query: 232 IKSWVSSKLPLAMIPNRFV-FMDSLPMTSSGKVDYASL 268
++ +L +P R+V F+ +LP T +GKV L
Sbjct: 483 VR-HCEPRLAYFAVP-RYVEFVAALPKTENGKVQKFVL 518
|
Length = 542 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 4e-10
Identities = 62/251 (24%), Positives = 109/251 (43%), Gaps = 34/251 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE---M 74
SL+ + +G +P ++ + +++ P +N+YG+TE + + Y R + +
Sbjct: 269 DSLEHVTFAGATMPDAVLERVNQHLP-GEKVNIYGTTE-AMNSLYMRDPRTGTEMRPGFF 326
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
S ++ V IG + D L + EGE+ +++TF + Y L+
Sbjct: 327 SEVRIVRIG---GSPDEALPNGE-----EGELVVAA--------ADATF--TGY--LNQP 366
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
+ G ++RT D A SG + LGR D I G+ + E+E L P
Sbjct: 367 QATAEKLQDG---WYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPG 423
Query: 195 VVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
V + V+ + G+ V A +V +E +T S L + +S+L P R+ F+
Sbjct: 424 VTEVVVIGLPDERWGQSV--TACVVPREGETLSADALDTF--CRASELADFKRPRRYFFL 479
Query: 253 DSLPMTSSGKV 263
D LP + KV
Sbjct: 480 DELPKNAMNKV 490
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 83 GLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYF-----SESTFMPSEYVKLHN 133
G+P D +++ +T++ + GEI G + GY+ + F+ +
Sbjct: 360 GIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEID------ 413
Query: 134 NSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHP 193
+ +FRTGD R + G R R I +G ++ E+E+ L HP
Sbjct: 414 -----------GKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHP 462
Query: 194 DVVDTAVVSHK--HQGELVILVAFIVLKEK---KTSSEIFLSSIKSWVSSKLPLAMIPNR 248
+ + V++ +GE V A +VL+ + KT+ E I +W + P
Sbjct: 463 AIQEACVIATPDPRRGETV--KAVVVLRPEARGKTTEE----EIIAWAREHMAAYKYPRI 516
Query: 249 FVFMDSLPMTSSGKV 263
F+DSLP + SGK+
Sbjct: 517 VEFVDSLPKSGSGKI 531
|
Length = 546 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 5e-10
Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 34/255 (13%)
Query: 18 SSLKLLVLSGEVLPLS--MWDIISKLFPNISILNLYGSTEVSGDC---TYFDCKRLPSIL 72
S LKL + PL+ + FP + + YG TE S C T+ D ++ I
Sbjct: 301 SKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHS--CITLTHGDPEKGHGIA 358
Query: 73 EMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEY 128
+ ++ +G + N ++ ++ DT K GE+ C+ GY+
Sbjct: 359 KKNS-----VGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYY---------- 403
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
N+ + + TGD GD+ + R IK G ++A E+E
Sbjct: 404 -----NNKEETDRTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAI 458
Query: 189 LRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
L HP V D AVV + I A +V+ K SE I ++V++ +
Sbjct: 459 LLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESE---EDILNFVAANVAHYKKVRV 515
Query: 249 FVFMDSLPMTSSGKV 263
F+DS+P + SGK+
Sbjct: 516 VQFVDSIPKSLSGKI 530
|
Length = 546 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 5e-10
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 26/180 (14%)
Query: 90 DIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQ 146
I +V SD + GE++ G + GY + T + + +
Sbjct: 364 QIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF----------------TD 407
Query: 147 TYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 204
+ RTGD +GDL GR I G++++ E +E L HP+V++ AV V +
Sbjct: 408 GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQ 467
Query: 205 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264
GE V A IV +E S+ + + +L IP F LP T+ G +D
Sbjct: 468 LYGEAV--AAVIVPRE---SAPPTAEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLD 522
|
Length = 534 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 66/262 (25%), Positives = 100/262 (38%), Gaps = 53/262 (20%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY--FDCKRLPSILEMS 75
SSL+L V +P+++ + +L YG +E SG T+ D R
Sbjct: 281 SSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDR-------- 332
Query: 76 TLKSVP--IGLPISNCD--IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVK 130
K+V IG I+ + IV + V E GE+ G + GY+ P
Sbjct: 333 --KTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYD----DPEATAA 386
Query: 131 -------LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
LH TGD R + G L + RK + G +
Sbjct: 387 AIDADGWLH------------------TGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPA 428
Query: 184 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
E+E L HP V + AV V + GE+ A++VLK +E + ++ L
Sbjct: 429 EVEEVLYEHPAVAEAAVIGVPDERLGEVGK--AYVVLKPGAELTE---EELIAYCREHLA 483
Query: 242 LAMIPNRFVFMDSLPMTSSGKV 263
+P F+D LP ++GKV
Sbjct: 484 KYKVPRSIEFLDELPKNATGKV 505
|
Length = 513 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-10
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 148 YFR-----TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS 202
YF +GD A + G F GR D IK +G+R+ E+E L HP V + V+
Sbjct: 428 YFAGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIG 487
Query: 203 HKH--QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 260
+GE++ AF+ L+ SE I+ +V L P F D LP T S
Sbjct: 488 KPDPVRGEII--KAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRS 545
Query: 261 GKV 263
GK+
Sbjct: 546 GKI 548
|
Length = 570 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 65/236 (27%), Positives = 92/236 (38%), Gaps = 49/236 (20%)
Query: 50 LYGSTEVSGDCTYF--------DCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TV 99
YG TE TY D KRL S G P + L++ D V
Sbjct: 312 YYGQTEAPMVITYLRKRDHDPDDPKRLTSC-----------GRPTPGLRVALLDEDGREV 360
Query: 100 KPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158
E GEI G + +GY++ P E + + + TGD AR
Sbjct: 361 AQGEVGEICVRGPLVMDGYWN----RPEETAEAFRDG------------WLHTGDVARED 404
Query: 159 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFI 216
+ G + RK I G + E+E L HP V AV V + GE V A +
Sbjct: 405 EDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAV--TAVV 462
Query: 217 VLK--EKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
VL+ ++E+ + +K S P + F+DSLP+T+ GK D +L A
Sbjct: 463 VLRPGAAVDAAEL-QAHVKERKGS----VHAPKQVDFVDSLPLTALGKPDKKALRA 513
|
Length = 524 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 8e-10
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 26/131 (19%)
Query: 145 SQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTLRGHPDVVDTAVV 201
+ ++ +GD G + +GR KD +IN G+++A EEIE+ L HP V+ A+V
Sbjct: 407 ANGFYCSGDLVSIDPDGYITVVGREKD---QINRGGEKIAAEEIENLLLRHPAVIHAALV 463
Query: 202 S--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM------IPNRFVFMD 253
S + GE AF+V+KE +K+ + +P+R +D
Sbjct: 464 SMEDELMGEKS--CAFLVVKE----------PLKAVQLRRFLREQGIAEFKLPDRVECVD 511
Query: 254 SLPMTSSGKVD 264
SLP+T+ GKVD
Sbjct: 512 SLPLTAVGKVD 522
|
Length = 536 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 48/248 (19%), Positives = 89/248 (35%), Gaps = 40/248 (16%)
Query: 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596
G + LD TG + W G V ++ + L ALD + +++
Sbjct: 2 DGVVAALDAATGKVLWRVDLGGTALGGGVA-VDGGRLYVATGKGELVALDAATGKLLWRK 60
Query: 597 PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF----ASLCI 652
G I G+P + V+ V + G L A+ + LW ++ +P +S
Sbjct: 61 DLSGEILGAPTVAG--GVVVVVTADGSLYALDAETG--KLLWSYQRSLPPLTLRGSSSPA 116
Query: 653 TSANRHVICCLVDGHVVALD-SSGSIIWRCR----------------TGGPIFAGPCTSF 695
+ ++ G +VALD +G ++W TG P+ G
Sbjct: 117 IVGDTVIVGFS-SGKLVALDPKTGKVLWEAPVAAPRGGSEIERLVDITGTPVVDG----- 170
Query: 696 ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755
+V S G + + + +G +LW + I A L + + LV
Sbjct: 171 ---GRVYASSYQGRLVALDLATGKVLWSREIS-SINGPAVDGGLLFVVDDD----GELVA 222
Query: 756 ICTSSGSI 763
+ ++G++
Sbjct: 223 LDRATGAV 230
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 50/189 (26%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 82 IGLPISNCDIVLVESDTV---KPD--EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
+G+P + ++ +V+ + PD EGE+ G + GY++ P E K +
Sbjct: 391 VGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWN----RPEETAKSFLDG- 445
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 196
+FRTGD + G + + R I G + E+E LR HP V
Sbjct: 446 -----------WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVE 494
Query: 197 DTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
D AVV + E V VA +VL+ ++++ L +P RF +D
Sbjct: 495 DAAVVGLPREDGSEEV--VAAVVLEPGAALDP---EGLRAYCREHLTRYKVPRRFYHVDE 549
Query: 255 LPMTSSGKV 263
LP GKV
Sbjct: 550 LPRDQLGKV 558
|
Length = 573 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 148 YFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 206
+F TGD AR G + GR KD I+ G+ + + EIE L HP + A+V++ +
Sbjct: 420 WFDTGDLARIDADGYIRISGRSKDVIIR-GGENIPVVEIEALLYRHPAIAQVAIVAYPDE 478
Query: 207 --GELVILVAFIVLKEKKTSSEIFLSSIKSWV-SSKLPLAMIPNRFVFMDSLPMTSSGKV 263
GE AF+V + + + ++ + K+ IP R V D+LP T SGK+
Sbjct: 479 RLGERA--CAFVVP---RPGQSLDFEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKI 533
|
Length = 547 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 47/259 (18%)
Query: 18 SSLKLLVLSGEVLPLS-MWDIISKL-FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMS 75
SSL+ +++G P+ M ++ ++ + I YG TE S P L+ +
Sbjct: 317 SSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIA--YGMTETS-----------PVSLQTT 363
Query: 76 T-------LKSVPIGLPISNCDIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSE 127
+++V P +V + TV E GE+ G + GY++ P
Sbjct: 364 AADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWN----NPEA 419
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIE 186
+ S + TGD A + G + +GR KD I+ G+ + EIE
Sbjct: 420 TAE-----------SIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR-GGENIYPREIE 467
Query: 187 HTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244
L HP V D V V + GE + VA++ L +SE ++ + +++
Sbjct: 468 EFLFTHPAVADVQVFGVPDEKYGEEI--VAWVRLHPGHAASE---EELREFCKARIAHFK 522
Query: 245 IPNRFVFMDSLPMTSSGKV 263
+P F F+D PMT +GKV
Sbjct: 523 VPRYFRFVDEFPMTVTGKV 541
|
Length = 558 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 77/275 (28%), Positives = 119/275 (43%), Gaps = 43/275 (15%)
Query: 6 PALQSQHNMHVPSSLKLLVLSGEVL--PLSMWDIISKLFPNISILNLYGSTEVSGDCTYF 63
PAL +H++ SSL+ L L+GE L P + W I L + +++ Y TE T +
Sbjct: 346 PALLRKHDL---SSLRALFLAGEPLDEPTASW-ISEAL--GVPVIDNYWQTE-----TGW 394
Query: 64 DCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDEGEIYA--GGL---CLSN 115
+ +E + G+P+ ++ L+ T P+E + G L C+
Sbjct: 395 PILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQT 454
Query: 116 GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175
+ + F+ Y G Q Y T D+ R G LGR D I +
Sbjct: 455 VWGDDDRFV-KTYWS-----------LFGRQVY-STFDWGIRDADGYYFILGRTDDVINV 501
Query: 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKT--SSEIFLS- 230
G R+ EIE ++ HP V + AVV K G++ VAF+V K+ + E L+
Sbjct: 502 AGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA--VAFVVPKDSDSLADREARLAL 559
Query: 231 --SIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
I + V S+L P R F+ +LP T SGK+
Sbjct: 560 EKEIMALVDSQLGAVARPARVWFVSALPKTRSGKL 594
|
Length = 629 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH--QG 207
T D + + G L F+GR D I ++G + E+E + P V + V K G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
E V I + EI ++ W L +P+ + +P ++GKV
Sbjct: 354 ERVKA-KVI------SHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNANGKV 402
|
Length = 414 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 33/235 (14%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
+ LW+V ++ + +FVG+ + I DA+ LW KL E +
Sbjct: 86 KRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS--EVLS 139
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-----KCQPVVDAPRQLIWCGS 577
L VVV G++ LD TG+ WT+ PV+ A ++ G
Sbjct: 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLV-GF 197
Query: 578 HDHNLYALDFRNYRCVYK----LPCGGS-------IFGSPAIDEVHDVLYVASTSGRLTA 626
L AL+ + + +++ LP G + + G P +D +Y S GR+ A
Sbjct: 198 AGGKLVALNLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG--GQVYAVSYQGRVAA 255
Query: 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680
+ +++ LW + + + DG VVALD SGS +W+
Sbjct: 256 LDLRSGRV--LWKRDASSYQ----GPAVDDNRLYVTDADGVVVALDRRSGSELWK 304
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 61/242 (25%), Positives = 92/242 (38%), Gaps = 39/242 (16%)
Query: 36 DIISKLFPNISILNLYGSTE------VSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC 89
DI+ L I +++ +G +E +S DC K + I P
Sbjct: 268 DILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAK----------AGAAGIPTPTVQT 317
Query: 90 DIVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTY 148
+V + + GE+ G LS GY+ P + +
Sbjct: 318 RVVDDQGNDCPAGVPGELLLRGPNLSPGYWRR----PQATARAFT-----------GDGW 362
Query: 149 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ-- 206
FRTGD ARR G + RK G+ + EIE L HP + + AVV
Sbjct: 363 FRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQW 422
Query: 207 GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYA 266
GE + IV + L I+S +S++L +P +D+LP T+SGK+ A
Sbjct: 423 GE--VGYLAIVPADGAPLD---LERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKA 477
Query: 267 SL 268
L
Sbjct: 478 RL 479
|
Length = 488 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-09
Identities = 35/116 (30%), Positives = 56/116 (48%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
Y+ +GD R + G GR D I ++G R+ E+E L HP + AVV +H+
Sbjct: 514 YYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEV 573
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+ + AF+ L E SE S+ V +++ P++ + LP T SGK+
Sbjct: 574 KGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKI 629
|
Length = 666 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 6e-09
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 40 KLFPNISILNLYGSTEVSGDCTY-FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 98
+ P++ + YG TE + T F+ ++L S SV + P +V +
Sbjct: 341 QTLPHVDFIQGYGMTESTAVGTRGFNTEKL------SKYSSVGLLAPNMQAKVVDWSTGC 394
Query: 99 VKP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156
+ P + GE++ G + GY + S K + RTGD A
Sbjct: 395 LLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDK---------------DGWLRTGDIAY 439
Query: 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVA 214
+ G L + R IK G ++A ++E L HP+++D AV + K GE I VA
Sbjct: 440 FDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGE--IPVA 497
Query: 215 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
F+V ++ T S+ ++ ++V+ ++ + VF+ S+P + +GK+
Sbjct: 498 FVVRRQGSTLSQ---EAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKI 543
|
Length = 560 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 7e-09
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 148 YFRTGDFARRIQSGDLVFLGRK-DRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 204
+FRTGD G L GR D I G + EIE L HP V + AV V
Sbjct: 395 WFRTGDLGHLDARGFLYITGRASDMYIS-GGSNVYPREIEEKLLTHPAVSEVAVLGVPDP 453
Query: 205 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
GE + VA V ++ E + + +W+ K+ +P RF F D+LP + GK+
Sbjct: 454 VWGE--VGVAVCVARDGAPVDE---AELLAWLDGKVARYKLPKRFFFWDALPKSGYGKI 507
|
Length = 528 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-09
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ- 206
++ TGD + G F+GR D I +G R+ E+E L HP VV++AVVS
Sbjct: 403 FYITGDRGIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPI 462
Query: 207 -GELVILVAFIVLKEKKTSS--EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
GE+V AF+VL + S E ++ V S P + F+ LP T +GK+
Sbjct: 463 RGEVV--KAFVVLAPQFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKI 520
Query: 264 DYASL 268
L
Sbjct: 521 KRNEL 525
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 9e-09
Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 51/236 (21%)
Query: 42 FPNISILNLYGSTEVSGDCTYFDCKRLPSIL----EMSTLKSVPIGLPISNCDIVLVESD 97
P + N YG TE++ L ++L + S G P+ N + +V+ D
Sbjct: 310 LPGLRFYNCYGQTEIAP---------LATVLGPEEHLRRPGSA--GRPVLNVETRVVDDD 358
Query: 98 --TVKPDE-GEIYAGGLCLSNGYF-----SESTFMPSEYVKLHNNSICNCSVSCGSQTYF 149
V P E GEI L GY+ + F G +F
Sbjct: 359 GNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF------------------RGG---WF 397
Query: 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQG 207
+GD + G + + RK IK G+ +A E+E L HP V + AV +
Sbjct: 398 HSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWI 457
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
E V A +V K T +E + + ++L +P R +F+D LP SGK+
Sbjct: 458 EAV--TAVVVPKAGATVTE---DELIAHCRARLAGFKVPKRVIFVDELPRNPSGKI 508
|
Length = 523 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 57/236 (24%), Positives = 83/236 (35%), Gaps = 68/236 (28%)
Query: 45 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEG 104
I+++ YG +E SG C Y D V ++ V+ ++G
Sbjct: 176 INVVRTYGMSETSGGCVY---------------------------DGVPLDGVRVRVEDG 208
Query: 105 EIYAGGLCLSNGY--------FSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156
I GG L+ GY F+E +FRT D
Sbjct: 209 RIALGGPTLAKGYRNPVDPDPFAEPG-------------------------WFRTDDLGA 243
Query: 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--GELVILVA 214
+ G L LGR D I G + + +E L HP V D AV G+ V VA
Sbjct: 244 -LDDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRV--VA 300
Query: 215 FIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
+V + L ++++ V+ L P +D LP GKVD +L
Sbjct: 301 AVVGDGGPAPT---LEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 9e-09
Identities = 66/273 (24%), Positives = 109/273 (39%), Gaps = 50/273 (18%)
Query: 4 VLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVS------ 57
+L L+ Q + + L+ + G +P + I +L++YGSTE S
Sbjct: 290 LLNLLEKQP-ADLSA-LRFFLCGGTTIPKKV--ARECQQRGIKLLSVYGSTESSPHAVVN 345
Query: 58 -GDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD--TVKP-DEGEIYAGGLCL 113
D M T G + +I +V+ T+ P EGE + G +
Sbjct: 346 LDDPLS---------RFMHT-----DGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNV 391
Query: 114 SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173
GY E P + + + ++ +GD R ++G + GRK I
Sbjct: 392 FMGYLDE----PELTARALDE-----------EGWYYSGDLCRMDEAGYIKITGRKKDII 436
Query: 174 KINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSS 231
G+ ++ E+E L HP + D VV+ + GE A++VLK S L
Sbjct: 437 VRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS--CAYVVLKAPHHSLT--LEE 492
Query: 232 IKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKV 263
+ ++ S K + P V +D LP T+SGK+
Sbjct: 493 VVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKI 525
|
Length = 547 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 1e-08
Identities = 56/295 (18%), Positives = 91/295 (30%), Gaps = 60/295 (20%)
Query: 463 QELWKVHMESCVDA-SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS 521
W + V S ++ D IY VGS K DA +++W + G +
Sbjct: 89 LVKWSYPLLGAVAQLSGPILGSDGKIY--VGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146
Query: 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGEVKCQPVVDAPRQLIW-CGS 577
+ + V VG G +Y L+ TG + WT++T A +
Sbjct: 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG 206
Query: 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV----LYVASTSGRLTAISVKALP 633
+D LYAL+ + + +I G AI V +YV
Sbjct: 207 YDGILYALNAEDGTLKWSQKVSQTI-GRTAISTTPAVDGGPVYVDGG------------- 252
Query: 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT 693
+ S ++C +G +IW GG +
Sbjct: 253 ----------------VYAGSYGGKLLC--------LDADTGELIWSFPAGGSVQGSGLY 288
Query: 694 SFAL----PSQVLICSRN-----GSIYSFEQESGN--LLWEYSVGDPITASAYID 737
+ + + + N GS+Y+ G L W Y VG + S
Sbjct: 289 TTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAG 343
|
Length = 370 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 59/266 (22%), Positives = 123/266 (46%), Gaps = 36/266 (13%)
Query: 8 LQSQHNMHVPSSLKLLVLSGEVLPLSMWDII-SKLFPNISILNLYGSTEVSGDCTYFDCK 66
++S++++ S+LK + GEV+ S+ + I +KL I YG TE+ TY C
Sbjct: 373 IRSKYDL---SNLKEIWCGGEVIEESIPEYIENKL--KIKSSRGYGQTEIG--ITYLYCY 425
Query: 67 RLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEI--YAGGLCLSNGYFSESTFM 124
+I + G+P ++ D + + EI A L + + +TF
Sbjct: 426 GHINI-PYNAT-----GVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSF--ATTFY 477
Query: 125 PSE--YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMAL 182
++ + +L + Y+ +GD + ++G + R D IKI+G ++ L
Sbjct: 478 KNDEKFKQLFSKF----------PGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQL 527
Query: 183 EEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-- 240
IE ++ HP V++ + + + +VLK+ +++ I L+ +K+ +++ +
Sbjct: 528 NTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQ 587
Query: 241 ---PLAMIPNRFVFMDSLPMTSSGKV 263
LA++ + + ++ LP T +GK+
Sbjct: 588 DIESLAVL-RKIIIVNQLPKTKTGKI 612
|
Length = 647 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 69/294 (23%), Positives = 110/294 (37%), Gaps = 52/294 (17%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
M ++ + V S++ ++ G L + KLFPN + + YG TE
Sbjct: 271 MADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSL 330
Query: 61 TY---FDCKRLPSILEMSTL---KSVPIGLPISNC----------DIVLVESDTVKPDEG 104
T+ D + T+ KS + P C I L ES V G
Sbjct: 331 TFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRV----G 386
Query: 105 EIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 164
I G + GY+ +++ S + + TGD ++G+L
Sbjct: 387 RILTRGPHVMLGYWGQNSETAS---------------VLSNDGWLDTGDIGWIDKAGNLW 431
Query: 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKK 222
+GR + IK G+ + EE+E L HP V VV E+V VA + L++
Sbjct: 432 LIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMV--VACVRLRDGW 489
Query: 223 TSSEIFLSSIKS--WVSS----------KLPLAMIPNRFV-FMDSLPMTSSGKV 263
S+ + K +SS L IP FV + P+T++GK+
Sbjct: 490 IWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKI 543
|
Length = 563 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 67/257 (26%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 12 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD-CTYFDCKRLPS 70
PSS + ++L G P + + K I + YG TE + T L
Sbjct: 248 GEGTYPSSFRCMLLGGGPAPKPLLEQ-CKE-KGIPVYQSYGMTETASQIVT------LSP 299
Query: 71 ILEMSTLKSVPIGLPISNCDIVLVESDTVKP--DEGEIYAGGLCLSNGYFSESTFMPSEY 128
++ L S G P+ C++ + + V P +EGEI G ++ GY
Sbjct: 300 EDALTKLGSA--GKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGY----------- 346
Query: 129 VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHT 188
L+ + G +F+TGD + G L L R+ I G+ + EIE
Sbjct: 347 --LNREDATRETFQDG---WFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEV 401
Query: 189 LRGHPDVVDTAVV--SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246
L HP V + VV G+ + VAF+V + T E+ + + KL +P
Sbjct: 402 LLSHPGVAEAGVVGVPDDKWGQ--VPVAFVVKSGEVTEEEL-----RHFCEEKLAKYKVP 454
Query: 247 NRFVFMDSLPMTSSGKV 263
RF F++ LP +SGK+
Sbjct: 455 KRFYFVEELPRNASGKL 471
|
Length = 483 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 145 SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VS 202
SQ F T D G L LGR + I G+ + E+E + V D V +
Sbjct: 322 SQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLP 381
Query: 203 HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
H GE+V A V K+ I L +K+ + +L P ++ + LP GK
Sbjct: 382 DPHWGEVV--TAIYVPKD----PSISLEELKTAIKDQLSPFKQPKHWIPVPQLPRNPQGK 435
Query: 263 VDYASL 268
++ L
Sbjct: 436 INRQQL 441
|
Length = 452 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 20 LKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 79
L++++ SG+ L ++ + +I + N YGSTEV + ++ + L+
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDI-LYNGYGSTEVG----------IGALATPADLRD 342
Query: 80 VP--IGLPISNCDIVLVESDT--VKPD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
P +G P++ C + +++ + V P G I+ GG Y
Sbjct: 343 APETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGG-----------GK 391
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
++ + S TGD +G L +GR+D I G+ + +E+ L HP
Sbjct: 392 AVVDGMTS--------TGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPA 443
Query: 195 VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
V D AV+ + L AF+VL S + + ++ ++ ++ P + S
Sbjct: 444 VADNAVIGVPDERFGHRLAAFVVL---HPGSGVDAAQLRDYLKDRVSRFEQPRDINIVSS 500
Query: 255 LPMTSSGKV 263
+P +GKV
Sbjct: 501 IPRNPTGKV 509
|
Length = 516 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-08
Identities = 40/120 (33%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 148 YFRTGDFARRIQSGDLVFLGRK--DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKH 205
+FRTGD A G +GR+ D IK G R+ EIE L GHP V + AVV
Sbjct: 351 WFRTGDVAVVDPDGMHRIVGRESTD-LIKSGGYRIGAGEIETALLGHPGVREAAVVGVPD 409
Query: 206 Q--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
G+ + VA++V + + E+ +V+ +L + P F+D+LP + GKV
Sbjct: 410 DDLGQRI--VAYVVGADDVAADELI-----DFVAQQLSVHKRPREVRFVDALPRNAMGKV 462
|
Length = 471 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-08
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 184 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
EIE L HP + D V V + GE + A+I+L+ T +E ++ + K+
Sbjct: 464 EIEEFLYTHPKIQDVQVVGVPDEKYGE--EVCAWIILRPGATLTE---EDVRDFCRGKIA 518
Query: 242 LAMIPNRFVFMDSLPMTSSGKV 263
IP F+D PMT +GK+
Sbjct: 519 HYKIPRYIRFVDEFPMTVTGKI 540
|
Length = 559 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 4e-08
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 22/190 (11%)
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKL-HNNS 135
S G P+ ++ +++++ K +GE G L + S F Y+K H NS
Sbjct: 361 KASTTDGRPLPGVEVKVIDANGAKLSQGET--GRLLVR----GCSNF--GGYLKRPHLNS 412
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
++ +F TGD A + G + GR I G+ + + EIE+ L HP V
Sbjct: 413 T-------DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAV 465
Query: 196 VDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
A+V++ + GE A +V K T F + + + K+ L IP R +D
Sbjct: 466 AQVAIVAYPDERLGERA--CAVVVPKPGCTLD--FAAMVAFLKAQKVALQYIPERLEVVD 521
Query: 254 SLPMTSSGKV 263
+LP T +GK+
Sbjct: 522 ALPATPAGKI 531
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-08
Identities = 47/196 (23%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 82 IGLPISNCD--IVLVESDTVKPDE---GEIYAGGLCLSN-----GYFSESTFMPSEYVKL 131
+GL + +V+++ + E+ G LC++ GY +
Sbjct: 388 VGLRLPYQRVRVVILDDAGRYLRDCAVDEV--GVLCIAGPNVFSGYLEAA---------- 435
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLR 190
HN + + TGD R G GR KD I+ G + IE L
Sbjct: 436 HNKGLW------LEDGWLNTGDLGRIDADGYFWLTGRAKDLIIR-GGHNIDPAAIEEALL 488
Query: 191 GHPDVVDTAVVSH--KHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP-LAMIPN 247
HP V A V H GEL VA++ LK +++E + + ++ + A +P
Sbjct: 489 RHPAVALAAAVGRPDAHAGELP--VAYVQLKPGASATE---AELLAFARDHIAERAAVPK 543
Query: 248 RFVFMDSLPMTSSGKV 263
+D+LP T+ GK+
Sbjct: 544 HVRILDALPKTAVGKI 559
|
Length = 632 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 25/160 (15%)
Query: 665 DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723
DG VVALD +G +WR + G L V + + G + + + E G LW
Sbjct: 74 DGTVVALDAETGKRLWRVDLDERLSGGVGADGGL---VFVGTEKGEVIALDAEDGKELWR 130
Query: 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 783
+ + + + + LV + T+ G + L TG+ + +
Sbjct: 131 AKLSSEVLSPPLVA-------------NGLVVVRTNDGRLTALDAA---TGERLWTYSRV 174
Query: 784 VQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
L L+G +SPV+ G V VG + + L+T
Sbjct: 175 T---PALTLRGS--ASPVIADGGVLVGFAGGKLVALNLQT 209
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 60/250 (24%), Positives = 95/250 (38%), Gaps = 31/250 (12%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTE-VSGDCTYFDCKRLPSILEMST 76
SL + GE P S +++F ++ YG TE SGD T + R E+
Sbjct: 264 DSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGD-TLMEAGR-----EIEK 317
Query: 77 LKSVPIGLPISNCDIVLVESDTVKPD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNS 135
+ S L I + P+ +GEI G ++ GY+ + +
Sbjct: 318 IGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY------ 371
Query: 136 ICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDV 195
+FR+GD + G L RK I G+ +A E+E + P+V
Sbjct: 372 ----------GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEV 421
Query: 196 VDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253
+ AV+ GE + A +VL T + L ++ +L +P + D
Sbjct: 422 AEAAVIGVHDDRWGERI--TAVVVLNPGAT---LTLEALDRHCRQRLASFKVPRQLKVRD 476
Query: 254 SLPMTSSGKV 263
LP SGKV
Sbjct: 477 ELPRNPSGKV 486
|
Length = 497 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-08
Identities = 67/264 (25%), Positives = 111/264 (42%), Gaps = 45/264 (17%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+SL+L+V E L + D + F I IL YG+TE S + LP +L
Sbjct: 898 ASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASV----NLPDVLAADFK 952
Query: 78 -----KSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFS--ESTFMPS 126
K +G+P+ + +V+ +T + ++G I GG + GY E T +
Sbjct: 953 RQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKT---A 1009
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM----AL 182
E +K + ++ TGD + G L R R KI G+ M A+
Sbjct: 1010 EVIKDIDGI-----------GWYVTGDKGHLDEDGFLTITDRYSRFAKIGGE-MVPLGAV 1057
Query: 183 EEIEHTLRGHPDVVDTAV-VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKL 240
EE G +VV V + +GE ++++ T + +K + S L
Sbjct: 1058 EEELAKALGGEEVVFAVTAVPDEKKGEKLVVLH--------TCGAEDVEELKRAIKESGL 1109
Query: 241 PLAMIPNRFVFMDSLPMTSSGKVD 264
P P+R+ +++LP+ SGK+D
Sbjct: 1110 PNLWKPSRYFKVEALPLLGSGKLD 1133
|
Length = 1146 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 145 SQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VS 202
++ +F+TGD A G + + RK I ++G + EIE + HP V + A V
Sbjct: 439 AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVP 498
Query: 203 HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
+ GE V L F+V ++ S E +K++ +P V DSLPMT GK
Sbjct: 499 DERSGEAVKL--FVVARDPGLSVE----ELKAYCKENFTGYKVPKHIVLRDSLPMTPVGK 552
Query: 263 V 263
+
Sbjct: 553 I 553
|
Length = 562 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 8e-08
Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 45/256 (17%)
Query: 18 SSLKLLVLSGEVLPLS---MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM 74
S+LKL + G L L+ W K +I YG TE S + +++
Sbjct: 326 SALKLTLSGGMALQLATAERW----KEVTGCAICEGYGMTETSPVVSV----NPSQAIQV 377
Query: 75 STLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLS-----NGYFSESTFMPSEYV 129
T IG+P+ + +++ D + GE+ G LC+ GY+ P
Sbjct: 378 GT-----IGIPVPSTLCKVIDDDGNELPLGEV--GELCVKGPQVMKGYWQR----PEATD 426
Query: 130 KLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL 189
++ + S + +TGD A + G + + RK I ++G + E+E L
Sbjct: 427 EILD-----------SDGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVL 475
Query: 190 RGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247
P V+ A V + GE + + F+V+K +T ++ + + + L +P
Sbjct: 476 AALPGVLQCAAIGVPDEKSGEAIKV--FVVVKPGETLTK---EQVMEHMRANLTGYKVPK 530
Query: 248 RFVFMDSLPMTSSGKV 263
F D LP T+ GK+
Sbjct: 531 AVEFRDELPTTNVGKI 546
|
Length = 562 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 48/176 (27%), Positives = 65/176 (36%), Gaps = 40/176 (22%)
Query: 45 ISILNLYGSTEVSG--DCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPD 102
I IL YG TE S D L ++ G P+ ++ + D
Sbjct: 378 IPILEGYGLTETSAVVSVNPPDRFVLGTV-----------GKPLPGIEVKIA-------D 419
Query: 103 EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
+GEI G + GY+ P + + +FRTGD + G
Sbjct: 420 DGEILVRGPNVMKGYYKN----PEATAE-----------AFTEDGWFRTGDLGELDEDGY 464
Query: 163 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIV 217
LV GRK IK+ NG+ +A E IE L P + VV LVA IV
Sbjct: 465 LVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVGDDK----KFLVALIV 516
|
Length = 613 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 184 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
EIE+ L HP V D AV V + GE V A + + + + + + +W+ +L
Sbjct: 406 EIENLLVTHPKVADVAVFGVPDEEMGERV--KAVVQPADGADAGDALAAELIAWLRGRLA 463
Query: 242 LAMIPNRFVFMDSLPMTSSGK 262
P F D LP T +GK
Sbjct: 464 HYKCPRSIDFEDELPRTPTGK 484
|
Length = 502 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG 207
+ TGD + G F+ R+ IK G+ ++ E+E+ + HP + D VV K
Sbjct: 399 WLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSI 458
Query: 208 ELVILVAFIVLKEKKTSS--EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 265
+ AF+VL E +T S E F ++ K+P + LP SGK+
Sbjct: 459 RDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSYL-----EIRKDLPRNCSGKIIK 513
Query: 266 ASLS 269
+L
Sbjct: 514 KNLK 517
|
Length = 517 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 58/333 (17%), Positives = 109/333 (32%), Gaps = 86/333 (25%)
Query: 501 ADAKRSSVLWEIKL----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 556
VLW + I+ + V D V G++ + TG I W
Sbjct: 9 TPEFDPEVLWSKSVGNGGMAGIDLTPVVAGDM--VYAADANGQVSAFNATTGKIIWE--- 63
Query: 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 616
L G + G+PA+ + ++
Sbjct: 64 -------------------------------------TSLSGKGFLGGTPAVG--NGKIF 84
Query: 617 VASTSGRLTAISVKALPFHTLW-----LHELEVPAFASLCITSANRHVICCLVDGHVVAL 671
V + SG L A+ K LW +L P T A+ + DG +
Sbjct: 85 VGTESGYLYALDAKDG--SELWRTEVSDSQLLSP------PTYADGKIYVGTGDGRLYYC 136
Query: 672 DS-SGSIIWRCRTGGPIFA--GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 728
++ +G ++W + P + G V + NG++ + +G +WE+SV +
Sbjct: 137 NAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSE 196
Query: 729 PITASA---YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQ 785
P + ID S + + ++S +++ ++ + +G+ S+
Sbjct: 197 PRGRTELPRMID-------SSVTYVVVGGYLYSTSYQGYLVALDFE-SGQFLWSRKA--- 245
Query: 786 EFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYC 818
S+ GRV+VG + +YC
Sbjct: 246 --------SGGTSTSTDANGRVYVGDGEGSLYC 270
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 32/194 (16%)
Query: 80 VPIGLPISNCDIVLVESD-TVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
V +G PI C+I +V+ V PD G I G +++GY+ +N
Sbjct: 314 VEVGSPIDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYY-------------NNPEA 360
Query: 137 CNCSVSCGSQTYFRTGD--FARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
S++ + +TGD F +++G LV GR I +NGQ +IE
Sbjct: 361 TKKSIT--PDGWLKTGDLGF---LRNGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEG 415
Query: 195 -----VVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
V V K Q E V++ F+ ++ IK V+ K+ L + +
Sbjct: 416 IKLGRVAACGVYDEKEQSEEVVI--FVEYRQSLDDFTPLALKIKRHVNKKMGLNI--DHV 471
Query: 250 VFMDSLPMTSSGKV 263
+ + S+P T+SGK+
Sbjct: 472 IPVRSIPKTTSGKI 485
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 149 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQ 206
+ +GD A R G + F GR ++++G+ ++ IE L HP + AV V +
Sbjct: 382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERV 441
Query: 207 GELVILVAFIVLKEKKTSS----EIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSG 261
G+ V+ A +VL++ T FL++ L P R+V LP T++
Sbjct: 442 GDQVM--AALVLRDGATFDPDAFAAFLAA-----QPDLGTKAWP-RYVRIAADLPSTATN 493
Query: 262 KVD 264
KV
Sbjct: 494 KVL 496
|
Length = 540 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 151 TGDFARRIQSGDLVFL-GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ--G 207
TGD I D +F+ R IK G ++A E+E L HP + D AVV K + G
Sbjct: 416 TGDIGY-IDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAG 474
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
E + VAF+V + SEI IK +V+ ++ ++ F+DS+P SGK+
Sbjct: 475 E--VPVAFVV---RSNGSEITEDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKI 525
|
Length = 537 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 150 RTGDFARRIQ-SGDLVF--LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ 206
R D R+ D F LGRKD +++ G ++ + L +P V AV +
Sbjct: 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLDGRR 334
Query: 207 GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
L AFIV+ E +E+ +++ + LP P+RF F LP T +GK+
Sbjct: 335 -----LKAFIVVAEDADEAEL-EIELRATAARHLPAPARPDRFRFGTELPRTGAGKL 385
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 59/234 (25%), Positives = 98/234 (41%), Gaps = 34/234 (14%)
Query: 47 ILNLYGSTEVSGD---CTYFD-CKRLP--SILEMSTLKSVPIGLPISNCDIVLVESDTVK 100
+++ YG TE +G C + D RLP +E+ + V I L +++ D+ E+
Sbjct: 327 VMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI-LGLADVDVKNKETQESV 385
Query: 101 PDEG----EIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156
P +G EI G + GY SE K + TGD
Sbjct: 386 PRDGKTMGEIVIKGSSIMKGYLKNPK-ATSEAFK---------------HGWLNTGDVGV 429
Query: 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFI 216
G + R I G+ ++ E+E+ L +P V++TAVV+ H AF+
Sbjct: 430 IHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFV 489
Query: 217 VLKEKKTSSEIFLSSIKS-------WVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
VL++ +T+ E + + + + LP M P + VF+ LP +GK+
Sbjct: 490 VLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
|
Length = 579 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 52/240 (21%), Positives = 88/240 (36%), Gaps = 51/240 (21%)
Query: 47 ILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG-LPISNCDIVLVESDT---VKPD 102
I+ YGSTE G+ + L + +G LP + +V + +T ++
Sbjct: 223 IVEFYGSTE--GNVGFI---NLFNKPGA-------VGRLPPAAIAVVKYDVETEEPIRDA 270
Query: 103 EG---EIYAG--GLCLS--------NGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYF 149
G ++ G GL L +GY + +E L + V YF
Sbjct: 271 NGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEA---TEKKILRD-------VFKKGDAYF 320
Query: 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV----VSHKH 205
TGD RR G F+ R T + G+ ++ E+E L HP V + V V
Sbjct: 321 NTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPG-T 379
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSGKVD 264
+G + A + L + + + + +LP P F+ ++ T + K
Sbjct: 380 EGRAGM--AALTLAP---GAAFDPQAFAAHLDEQLPAYARP-LFLRVQAAMETTGTFKYQ 433
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 28/114 (24%), Positives = 50/114 (43%)
Query: 149 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE 208
+R GD+ G +V GR D T+ G RM EI + + +V ++ + +
Sbjct: 501 WRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDG 560
Query: 209 LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
+V F+ L T + L IK + + L +P+ + + +P T +GK
Sbjct: 561 GYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGK 614
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 22/178 (12%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL---EGRIE 519
ELW+ + SP +D ++VG+ + +A+ V+W E +
Sbjct: 101 SELWRTEVSDSQLLSPPTY---ADGKIYVGTGDGRLYYCNAETGKVVWNRTSTAPELSLR 157
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---------CGEVKCQ--PVVDA 568
AA + + V VG G + L+ TG W F + VV
Sbjct: 158 GGAAPVGAYDVVFVGDGNGTVVALNTGTGVDIWEFSVSEPRGRTELPRMIDSSVTYVVVG 217
Query: 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626
++ S+ L ALDF + + ++ G + + +YV G L
Sbjct: 218 GY--LYSTSYQGYLVALDFESGQFLWSRKASG-GTSTSTDA--NGRVYVGDGEGSLYC 270
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 31/189 (16%)
Query: 82 IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFS--ESTFMPSEYVKLHNNSI 136
IGLP+ + +I LV+ D V P E GE++ G + GY+ E+T E +K
Sbjct: 380 IGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEAT---DEVIK------ 430
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 196
+ TGD A + G L + RK I ++G + EIE + HP V+
Sbjct: 431 ---------DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVL 481
Query: 197 DTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254
+ A V + GE V + F+V K+ + E + + L +P F D
Sbjct: 482 EVAAVGVPSEVSGEAVKI--FVVKKDPSLTEE----ELITHCRRHLTGYKVPKLVEFRDE 535
Query: 255 LPMTSSGKV 263
LP ++ GK+
Sbjct: 536 LPKSNVGKI 544
|
Length = 560 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKH 205
+F TGD A G + R IK G+ ++ ++E+ GHP V + AV V H
Sbjct: 411 FFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPK 470
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDY 265
E +L+ + LK +T++ I ++ K+ +P+ F+D++P T++GK+
Sbjct: 471 WDERPLLI--VQLKPGETATR---EEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILK 525
Query: 266 ASL 268
+L
Sbjct: 526 TAL 528
|
Length = 542 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 51/194 (26%), Positives = 80/194 (41%), Gaps = 29/194 (14%)
Query: 78 KSVP--IGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKL 131
K VP IG+P + + +++ +T + P E GEI G + GY+++ P E +
Sbjct: 372 KRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNK----PEETAAV 427
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
+ + TGD + G RK I +G + E+E L
Sbjct: 428 LQDG------------WLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYE 475
Query: 192 HPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249
H V + V ++GE V AF+VLKE SE + + L +P +
Sbjct: 476 HEKVQEVVTIGVPDPYRGETV--KAFVVLKEGTECSE---EELNQFARKYLAAYKVPKVY 530
Query: 250 VFMDSLPMTSSGKV 263
F D LP T+ GK+
Sbjct: 531 EFRDELPKTTVGKI 544
|
Length = 563 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 82 IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICN 138
IGLP+ + ++ + + D + E GEI G + GY++ P E K+
Sbjct: 382 IGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWN----RPDETAKVMT----- 432
Query: 139 CSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
+ +FRTGD + G + RK I ++G + EIE + HP V++
Sbjct: 433 ------ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEV 486
Query: 199 AV--VSHKHQGELVILVAFIVLKEKK-TSSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDS 254
A V +H GE V L F+V K+ T ++ + + K P +FV F
Sbjct: 487 AAVGVPDEHSGEAVKL--FVVKKDPALTEEDVKAFCKERLTNYKRP------KFVEFRTE 538
Query: 255 LPMTSSGKV 263
LP T+ GK+
Sbjct: 539 LPKTNVGKI 547
|
Length = 557 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 38/193 (19%)
Query: 82 IGLPISNCDIVLVESDTVKPDEGEIYA----GGLCLS-----NGYFSESTFMPSEYVKLH 132
IGLPI + D +K D G + A G LC+ GY+ P E K+
Sbjct: 384 IGLPIPSTDAC------IKDDAGTVLAIGEIGELCIKGPQVMKGYWKR----PEETAKVM 433
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+ + + TGD AR + G + + RK I ++G + EIE +
Sbjct: 434 D-----------ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMM 482
Query: 193 PDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250
P V++ A V + GE+V +V IV K+ ++E +K+ + L P
Sbjct: 483 PGVLEVAAVGVPDEKSGEIVKVV--IVKKDPALTAE----DVKAHARANLTGYKQPRIIE 536
Query: 251 FMDSLPMTSSGKV 263
F LP T+ GK+
Sbjct: 537 FRKELPKTNVGKI 549
|
Length = 560 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 40/177 (22%)
Query: 45 ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEG 104
I IL YG TE SG T + + +V G P+ ++ + E +G
Sbjct: 240 IPILEGYGLTETSGVATV-------NRPGDIRIGTV--GKPLPGVEVRIAE-------DG 283
Query: 105 EIYAGGLCLSNGYF--SESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
EI G + GY+ E+T + + + TGD R + G
Sbjct: 284 EILVRGPNVMKGYYKNPEAT-----------------AEALDEDGWLHTGDIGRLDEDGF 326
Query: 163 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVL 218
LV RK I G+ +A + IE+ L+ P + VV L A IVL
Sbjct: 327 LVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPY----LTALIVL 379
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 149 FRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHKHQ 206
+ +GD A R G F GR ++++G+ + IE L +PD + AV V
Sbjct: 383 YWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVV 442
Query: 207 GELVILVAFIVLKEKKT----SSEIFLSSIKSWVSSKLPLAMIPNRFV-FMDSLPMTSSG 261
G+ V+ A +VL + FL++ + + K P +V LP T++
Sbjct: 443 GDQVM--AALVLAPGAKFDPDAFAEFLAA-QPDLGPK----QWP-SYVRVCAELPRTATF 494
Query: 262 KVDYASLSA 270
KV LSA
Sbjct: 495 KVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 34/166 (20%)
Query: 665 DGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723
+G V A ++ +G IIW G F G T ++ + + +G +Y+ + + G+ LW
Sbjct: 47 NGQVSAFNATTGKIIWETSLSGKGFLGG-TPAVGNGKIFVGTESGYLYALDAKDGSELWR 105
Query: 724 YSVGD-----PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQ 778
V D P T + D + + T G ++ TGK
Sbjct: 106 TEVSDSQLLSPPTYA-----------------DGKIYVGTGDGRLYYC---NAETGKVVW 145
Query: 779 SKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 824
++ E L L+G ++PV VFVG D +AL T
Sbjct: 146 NRTSTAPE---LSLRG--GAAPVGAYDVVFVG--DGNGTVVALNTG 184
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 4e-05
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220
G + R IK G+ ++ ++E+ L GHP V + AVV+ H +A +V +
Sbjct: 403 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRG 462
Query: 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
+K + E + + +P+ +VF + +P TS+GK
Sbjct: 463 EKPTPEELNEHLLKAGFA---KWQLPDAYVFAEEIPRTSAGKF 502
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKI---NGQRMALEEIEHTLRGHPDVVDTAVVSHK 204
+F +GD + G ++ KDR+ I G+ ++ E+E+ + HP V++ +VV+
Sbjct: 431 WFHSGDLGVKHPDG---YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARP 487
Query: 205 HQ--GELVILVAFIVLKEKKTSSE--IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 260
+ GE AF+ LK S+ I + +LP +P VF LP T++
Sbjct: 488 DERWGESP--CAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTAT 544
Query: 261 GKVDYASLSAST 272
GK+ L A
Sbjct: 545 GKIQKHVLRAKA 556
|
Length = 567 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 148 YF-------RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAV 200
YF R GD+ + G +V GR D T+ G R+ EI + P+V+D+ V
Sbjct: 492 YFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLV 551
Query: 201 VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSS 260
+ + V + F+VL E T + + I++ + + L +P++ + + +P T S
Sbjct: 552 IGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLS 611
Query: 261 GK 262
GK
Sbjct: 612 GK 613
|
Length = 655 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 45/180 (25%), Positives = 66/180 (36%), Gaps = 38/180 (21%)
Query: 51 YGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE------SDTVKPDEG 104
YG TE T L + +T +G P+ C+I LV+ P G
Sbjct: 301 YGLTETCAGGT------LSDPGDTTTGH---VGPPLPCCEIKLVDVPEMGYFAKDDPPRG 351
Query: 105 EIYAGGLCLSNGYFS--ESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGD 162
EI G + GY+ E T +E +F TGD + G
Sbjct: 352 EICIRGPNVFKGYYKNPEKT---AEAFD--------------EDGWFHTGDIGEWLPDGT 394
Query: 163 LVFLGRKDRTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEK 221
L + RK K+ G+ +ALE++E+ + P V V + LVA +V E
Sbjct: 395 LKIIDRKKNLFKLSQGEYVALEKLENIYKSSPLVDQICVYGDSLK---SFLVAIVVPDED 451
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 14/121 (11%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRT--IKING-QRMALEEIEHTLRGHPDVVDTAVVSHK 204
+F TGD A G ++ KDR+ I I+G + ++ E+E L HP V+ AVV+
Sbjct: 417 WFHTGDLAVLHPDG---YIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKP 473
Query: 205 HQ--GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
GE + AF+ LK+ +++E I + L +P VF LP TS+GK
Sbjct: 474 DPKWGE--VPCAFVELKDGASATE---EEIIAHCREHLAGFKVPKAVVF-GELPKTSTGK 527
Query: 263 V 263
+
Sbjct: 528 I 528
|
Length = 545 |
| >gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 42/183 (22%), Positives = 64/183 (34%), Gaps = 53/183 (28%)
Query: 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC----------------RTGGPI 687
PA A + +A+R G V ALD +G IW +GG
Sbjct: 65 PAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT 117
Query: 688 FAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESC 747
AG +V I S G +Y+ E G + W+ V + +
Sbjct: 118 VAG--------GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS---------- 159
Query: 748 LSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRV 807
D LV + TS+G + L + G + + + L L+G+ S+P G
Sbjct: 160 ---DGLVLVHTSNGMLQALNES---DGAVKWTVN---LDVPSLTLRGE--SAPATAFGGA 208
Query: 808 FVG 810
VG
Sbjct: 209 IVG 211
|
Length = 394 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 80 VPIGLPISNCDIVLV-ESDTVKPDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSI 136
V +G PI I +V E + P+ G + G +++GY+ N
Sbjct: 374 VELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYY--------------RNPE 419
Query: 137 CNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV 196
N +FRTGD + G L GR+ I ING EIE + P V
Sbjct: 420 ANAEA-FTEDGWFRTGDLGF-LHDGRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGVE 477
Query: 197 D--TAVVSHKHQGELVILVAFIVLKEKKTSSEIF--LSSIKSWVSSKL---PLAMIPNRF 249
TA + + G +A + + L +I++ V+ K+ P +IP
Sbjct: 478 PSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVARKIGIAPAYVIP--- 534
Query: 250 VFMDSLPMTSSGKVDYASLSA 270
+ + P TS GK+ A L
Sbjct: 535 LAKEDFPKTSLGKIQRAQLRK 555
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 151 TGDFARRIQSGDLVFLGRKDRTIKINGQRMAL---EEIEHTLRGHPDVVDTAVVS--HKH 205
TGD + G + GR R KI G+ ++L EE+ L PD A VS
Sbjct: 1014 TGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELW--PDA-LHAAVSIPDAR 1070
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVFMDSLPMTSSGKVD 264
+GE +IL+ T+S+ ++ + + M+P + +D +P+ +GK+D
Sbjct: 1071 KGERIILLT--------TASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKID 1122
Query: 265 YASLSA 270
Y +++
Sbjct: 1123 YVAVTK 1128
|
Length = 1140 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSH--KH 205
+ RTGD + G L R I+ G+ + ++E+ + P+VV+ AV+ +
Sbjct: 431 WLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDK 490
Query: 206 QGE---LVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
GE V ++A + ++T+ ++ + +LP M+P + F+D + TS GK
Sbjct: 491 WGERPLAVTVLAPGIEPTRETAER-----LRDQLRDRLPNWMLPEYWTFVDEIDKTSVGK 545
Query: 263 VD 264
D
Sbjct: 546 FD 547
|
Length = 576 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 7e-04
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 26/255 (10%)
Query: 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLK 78
SL+ +V +GE L L + + + + F I IL+ GSTEV F R+ + TL
Sbjct: 261 SLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVG---QTFVSNRVDE-WRLGTLG 316
Query: 79 SVPIGLPISNCDIVLVESDTVKPD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 137
V LP +V + T P EG+++ G ++ GY++ P V
Sbjct: 317 RV---LPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNR----PDSPVA------- 362
Query: 138 NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 197
++ + T D G + + R D T I G + E+E + V +
Sbjct: 363 -------NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAE 415
Query: 198 TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257
AVV+ + L AF+V T + + + ++L +P+RF +D LP
Sbjct: 416 AAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPR 475
Query: 258 TSSGKVDYASLSAST 272
T +GK+ +L +
Sbjct: 476 TPNGKLVRGALRKQS 490
|
Length = 705 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 148 YFRTGDFARRIQSGDLVFLGR-KDRTIKINGQRMALEEIEHTLRGHPDVVDTAV--VSHK 204
+F TGD + + G + +GR KD I G + +E+E + P VV++AV V H
Sbjct: 378 FFITGDLGKIDERGYVHIVGRGKDLIIS-GGYNVYPKEVEGEIDELPGVVESAVIGVPHP 436
Query: 205 HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKV 263
GE V A +V K E ++I + + +L P R F+D LP + GKV
Sbjct: 437 DFGEGV--TAVVVPKPGAALDE---AAILAALKGRLARFKQPKRVFFVDELPRNTMGKV 490
|
Length = 504 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF----SQVVVGCY--- 536
D ++ GS+ K +C DA ++W G ++ S +V +G
Sbjct: 248 YVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDND 307
Query: 537 ---KGKIYFLDYLTGDIY--WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 588
G +Y L + G W++ G V + L + G LYA
Sbjct: 308 GRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRDG 364
|
Length = 370 |
| >gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 39/192 (20%)
Query: 82 IGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSIC 137
+G PI ++ + D + GEI G + +GY ++ P
Sbjct: 347 LGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPIDP------------ 394
Query: 138 NCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVD 197
+F TGD + G LV GR I + G+ + EIE V +
Sbjct: 395 --------DDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFPTEIERVAAQVRGVRE 445
Query: 198 TAVV-----SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
AVV + LVI F E SE+ ++ V+S+ ++P+ VF+
Sbjct: 446 GAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEV----VQR-VASEC--GVVPSDVVFV 498
Query: 253 D--SLPMTSSGK 262
SLP TSSGK
Sbjct: 499 APGSLPRTSSGK 510
|
Length = 525 |
| >gnl|CDD|215989 pfam00550, PP-binding, Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 0.001
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 292 QVIRKAFGHALMVEEVLH-HDNFFTMGGNSIAAAHVAH------NLGIDMRLIYNFPTPS 344
+ +R+ L + + + D+ F +G +S+ A + + I ++ PT
Sbjct: 1 ERLREIVAEVLGIPDEIDPDDDLFDLGLDSLLAVELLARLEEEFGVEIPPSDLFEHPTLG 60
Query: 345 KL 346
+L
Sbjct: 61 EL 62
|
A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Vibrio anguillarum angR has the attachment serine replaced by an alanine. Length = 66 |
| >gnl|CDD|216242 pfam01011, PQQ, PQQ enzyme repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566
V VG G++Y LD TG + W F+T G P+
Sbjct: 3 VYVGTADGRLYALDAKTGKVLWKFKTGGPDDSSPLG 38
|
The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilise pyrrolo-quinoline quinone as a prosthetic group. Length = 38 |
| >gnl|CDD|222231 pfam13570, YWTD, YWTD domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 789 KLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+ G + SSP + GG V+VG D +Y +
Sbjct: 6 SFDTGGPVVSSPAVAGGLVYVGTGDGTLYALDAA 39
|
The YWTD repeat appears on the low-density lipoprotein receptor (LDLR) up to six times, being preceded and followed by an EGF domain. The region of the LDLR carrying these two types of repeat appears to control the related processes of lipoprotein release at low pH and the recycling of the receptor to the cell surface. The YWTD repeats form a six-bladed beta-propeller that packs tightly against the C-terminal EGF module. Length = 39 |
| >gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 71/361 (19%), Positives = 119/361 (32%), Gaps = 130/361 (36%)
Query: 502 DAKRSSVLWEIKLEGRIEC---------SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 552
DA +W + L + S V +V +G KG++Y L+ G++ W
Sbjct: 85 DADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAW 144
Query: 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 612
+ GE +PVV
Sbjct: 145 QTKVAGEALSRPVVSD-------------------------------------------- 160
Query: 613 DVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSA----NRHVICCLVD 665
++ V +++G L A++ W L+VP+ +L SA I +
Sbjct: 161 GLVLVHTSNGMLQALNES-----DGAVKWTVNLDVPSL-TLRGESAPATAFGGAIVGGDN 214
Query: 666 GHV-VALDSSGSIIWRCR----TGG------------PIFAGPCTSFALPSQVLICSRNG 708
G V L G +IW+ R TG P+ G +AL + NG
Sbjct: 215 GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYAL-------AYNG 266
Query: 709 SIYSFEQESGNLLW--EY-SVGDPITASAYI---DEHLQLKLESCLSIDRLVCICTSSGS 762
++ + + SG ++W EY SV D I D++ DR+ + T G
Sbjct: 267 NLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQN-----------DRVYALDTRGG- 314
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALE 822
+QS +L + ++PV+ G + VG + Y++ I E
Sbjct: 315 ----------VELWSQS-----------DLLHRLLTAPVLYNGYLVVGDSEGYLHWINRE 353
Query: 823 T 823
Sbjct: 354 D 354
|
Length = 394 |
| >gnl|CDD|216242 pfam01011, PQQ, PQQ enzyme repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 657 RHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 691
V DG + ALD +G ++W+ +TGGP + P
Sbjct: 1 GVVYVGTADGRLYALDAKTGKVLWKFKTGGPDDSSP 36
|
The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilise pyrrolo-quinoline quinone as a prosthetic group. Length = 38 |
| >gnl|CDD|222231 pfam13570, YWTD, YWTD domain | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 548 GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586
G++ W+F T G V P V L++ G+ D LYALD
Sbjct: 1 GEVLWSFDTGGPVVSSPAVAG--GLVYVGTGDGTLYALD 37
|
The YWTD repeat appears on the low-density lipoprotein receptor (LDLR) up to six times, being preceded and followed by an EGF domain. The region of the LDLR carrying these two types of repeat appears to control the related processes of lipoprotein release at low pH and the recycling of the receptor to the cell surface. The YWTD repeats form a six-bladed beta-propeller that packs tightly against the C-terminal EGF module. Length = 39 |
| >gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH-TLRGHPDVVD-TAVVSHKH 205
++ TGD R + G + GR R KI G+ ++LE +E L PD TA+ S
Sbjct: 592 WYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDAS 651
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSI-KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264
+GE LV F T SE+ + + +P +P ++ LP+ SGK D
Sbjct: 652 KGE--ALVLF------TTDSELTREKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPD 703
Query: 265 YASL 268
+ +L
Sbjct: 704 FVTL 707
|
Length = 718 |
| >gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase) | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 45/155 (29%)
Query: 599 GGSIFG--SPAIDEVHD-VLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCI 652
GG G S I V+D V+YV ++ R+ AI K T LW ++ +P C
Sbjct: 46 GGKQRGQESQPI--VNDGVMYVTTSYNRVFAIDAK-----TGKELWKYKHRLPEDIRPCC 98
Query: 653 TSANR-------HVICCLVDGHVVALDS-SGSIIWRCR----------TGGPIFAGPCTS 694
NR V +D H+VALD+ +G ++W+ + T P+
Sbjct: 99 DVVNRGVALYGDKVYFGTLDAHLVALDAKTGKVVWKKKVADYKAGYSMTLAPLVVK---- 154
Query: 695 FALPSQVLICSRNGS------IYSFEQESGNLLWE 723
+V++ G I + + E+G +W
Sbjct: 155 ----GKVIVGVSGGEFGVRGFIAALDAETGKEVWR 185
|
This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller. Length = 529 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 38/186 (20%), Positives = 60/186 (32%), Gaps = 26/186 (13%)
Query: 463 QELWKVHMESCVDASPL--VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC 520
W + + S + +Y+ + +A+ ++ W K+ I
Sbjct: 174 TLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGR 233
Query: 521 SA----------AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP- 569
+A V D V G Y GK+ LD TG++ W+F G V+ + P
Sbjct: 234 TAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPV 292
Query: 570 -----RQLIWCGSHDH----NLYALDFR--NYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618
+ I +D +LYAL + P GG S LY
Sbjct: 293 AGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSD-GTLYFG 351
Query: 619 STSGRL 624
GR
Sbjct: 352 GDDGRG 357
|
Length = 370 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ- 206
+F TGD A G + R IK G+ ++ +IE+ HP V + A ++ H
Sbjct: 410 WFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPK 469
Query: 207 -GELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGK 262
E +LV K+ +E+ + ++ K+ IP+ VF+D++P T++GK
Sbjct: 470 WDERPLLVVV-----KRPGAEVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGK 521
|
Length = 539 |
| >gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 23/145 (15%)
Query: 604 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSANR---- 657
P + V V+YV ++ R+ A+ K LW ++ ++P +C NR
Sbjct: 63 SQPLV--VDGVMYVTTSYSRVYALDAK--TGKELWKYDPKLPDDIIPVMCCDVVNRGAAL 118
Query: 658 ---HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP--SQVLICSRN---- 707
V +D +VALD +G ++W + G T+ L +V+
Sbjct: 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKKGYTITAAPLVVKGKVITGISGGEFG 178
Query: 708 --GSIYSFEQESGNLLWE-YSVGDP 729
G + +++ ++G L+W Y+V
Sbjct: 179 VRGYVTAYDAKTGKLVWRRYTVPGD 203
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. Length = 526 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVVDTAVVS----HK 204
R GD +R G GR D T+ + G + + EIE R + +TA V
Sbjct: 360 RHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDG 419
Query: 205 HQGELVILVAFIVLKEKKTSSEI------FLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT 258
LVI + K+ + F +I++ ++ PL + +R + LP
Sbjct: 420 GPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLN---PLFKV-SRVKIVPELPRN 475
Query: 259 SSGKV 263
+S K+
Sbjct: 476 ASNKL 480
|
Length = 499 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVVDTAVVSHKHQG- 207
R GD R G GR D T+ + G +++ EIE V++TA + G
Sbjct: 592 RHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGG 651
Query: 208 ---ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 263
+LVI S + KL PL + + V + S P T+S KV
Sbjct: 652 GPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKV-SAVVIVPSFPRTASNKV 710
|
Length = 728 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 27/191 (14%)
Query: 79 SVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
S+ + LP D+V ++ D K + GE+ G ++ GY++ +V
Sbjct: 366 SIGLMLPGIELDVVSLD-DPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV----- 419
Query: 135 SICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPD 194
F TGD G + RK I G + + IE + HP
Sbjct: 420 -----------GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPG 468
Query: 195 VVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252
V + V + +++GE AF+ L+ + L ++++++ KL +P F+
Sbjct: 469 VQEVIVIGIPDQYRGEAA--KAFVKLRPG--AKPFSLDELRAFLAGKLGKHELPVAVEFV 524
Query: 253 DSLPMTSSGKV 263
D LP T GK+
Sbjct: 525 DELPRTPVGKL 535
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 42/183 (22%), Positives = 68/183 (37%), Gaps = 44/183 (24%)
Query: 95 ESDTVKPDE--GEIYAGGLCLSNGYFS--ESTFMPSEYVKLHNNSICNCSVSCGSQTYFR 150
E+ P+ G I G L +GYF ES + + +
Sbjct: 401 EAGMPLPERVVGHICVRGPSLMSGYFRDEESQDV------------------LAADGWLD 442
Query: 151 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV--DTAVVS-HKHQG 207
TGD + G L GR I ING+ + ++IE P++ D A S + G
Sbjct: 443 TGDLGYLLD-GYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG 501
Query: 208 ELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA--------MIPNRFVFMDSLPMTS 259
E + ++L + + S E + +++ + ++P SLP TS
Sbjct: 502 EKI-----VLLVQCRISDEERRGQLIHALAALVRSEFGVEAAVELVPPH-----SLPRTS 551
Query: 260 SGK 262
SGK
Sbjct: 552 SGK 554
|
Length = 579 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 829 | |||
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.98 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.98 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.98 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.98 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.98 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.98 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.98 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.98 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.98 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.98 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.97 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.97 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.97 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.97 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.97 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.97 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.97 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.97 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.97 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.97 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.97 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.97 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.97 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.97 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.97 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.97 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.97 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.97 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.97 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.97 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.97 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.97 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.97 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.97 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.97 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.97 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.96 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.96 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.96 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.96 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.96 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.96 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.96 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.96 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.96 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.96 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 99.95 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.95 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.95 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.95 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.95 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.95 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.95 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 99.94 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.94 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 99.94 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.94 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.91 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.91 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.9 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.88 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.88 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.87 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.84 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.83 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.82 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.82 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.8 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.76 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.75 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.74 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 99.72 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.68 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.66 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.66 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.64 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.61 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.61 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.6 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.6 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.6 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.59 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 99.56 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.55 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.54 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.52 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.51 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.5 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.5 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.5 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.49 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.49 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.49 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.48 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.45 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.44 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.44 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.43 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.42 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.42 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.42 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.4 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.4 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.4 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.37 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.36 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.33 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.32 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.32 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.31 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.31 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.31 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.3 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.3 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.29 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.28 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.28 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.28 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.24 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.24 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 99.23 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.22 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.22 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.21 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.21 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.2 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.2 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.18 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.18 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.18 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.17 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.16 | |
| PTZ00421 | 493 | coronin; Provisional | 99.16 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.15 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.15 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.15 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.15 | |
| PTZ00420 | 568 | coronin; Provisional | 99.14 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.12 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.12 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.11 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.09 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| PTZ00421 | 493 | coronin; Provisional | 99.08 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.06 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 99.06 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.06 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.05 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.03 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.03 | |
| PTZ00420 | 568 | coronin; Provisional | 99.02 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.02 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.02 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 98.99 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 98.94 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 98.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.94 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.91 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.91 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.89 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.89 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.88 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.85 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 98.84 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.83 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.83 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 98.82 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.81 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.78 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.76 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.75 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.75 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.72 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.71 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 98.7 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.7 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.68 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.66 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 98.66 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 98.66 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.63 | |
| PF00550 | 67 | PP-binding: Phosphopantetheine attachment site; In | 98.63 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 98.62 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.61 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 98.6 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.59 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.59 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.57 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.56 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.53 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.53 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.51 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.5 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.43 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.4 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.4 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.38 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.36 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.35 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 98.35 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.34 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.33 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.32 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.31 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.29 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 98.27 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.26 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.25 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.25 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 98.21 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.21 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.19 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.19 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.17 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.17 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.16 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 98.15 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.14 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.09 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.09 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.07 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.07 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.07 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 98.06 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.06 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.05 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.04 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.03 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.02 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 97.99 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.98 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 97.98 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.95 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.91 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 97.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.9 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 97.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 97.88 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.87 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.86 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.85 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 97.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 97.81 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.8 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.8 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 97.79 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 97.79 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.77 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 97.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.74 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 97.73 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.71 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 97.69 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.67 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.66 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 97.64 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.61 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.61 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.6 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.59 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 97.58 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 97.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.56 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.56 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.55 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.55 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.54 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 97.53 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.5 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.48 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.47 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.47 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.46 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 97.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.36 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.33 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 97.33 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 97.29 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.29 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.27 | |
| PRK00982 | 78 | acpP acyl carrier protein; Provisional | 97.26 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 97.25 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.24 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 97.23 | |
| CHL00124 | 82 | acpP acyl carrier protein; Validated | 97.23 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.23 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.23 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 97.22 | |
| smart00823 | 86 | PKS_PP Phosphopantetheine attachment site. Phospho | 97.22 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.22 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 97.21 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.21 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 97.19 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.18 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 97.16 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.14 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 97.14 | |
| PRK09184 | 89 | acyl carrier protein; Provisional | 97.08 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.04 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 97.03 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.03 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.02 | |
| COG3433 | 74 | Aryl carrier domain [Secondary metabolites biosynt | 96.93 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.91 | |
| TIGR00517 | 77 | acyl_carrier acyl carrier protein. S (Ser) at posi | 96.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.89 | |
| PRK05883 | 91 | acyl carrier protein; Validated | 96.88 | |
| PRK12449 | 80 | acyl carrier protein; Provisional | 96.88 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.72 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 96.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 96.69 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 96.69 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.67 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.64 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.61 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.61 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.59 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.59 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.59 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.53 | |
| PRK05828 | 84 | acyl carrier protein; Validated | 96.52 | |
| PRK07081 | 83 | acyl carrier protein; Provisional | 96.51 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.5 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.5 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.49 | |
| PRK07117 | 79 | acyl carrier protein; Validated | 96.48 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 96.46 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 96.43 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.42 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.4 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.36 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.34 | |
| PRK05350 | 82 | acyl carrier protein; Provisional | 96.33 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.29 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 96.28 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.17 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.16 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.11 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 96.08 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 96.06 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 96.03 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 95.98 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.91 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 95.88 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 95.85 | |
| PRK07639 | 86 | acyl carrier protein; Provisional | 95.84 | |
| PRK05087 | 78 | D-alanine--poly(phosphoribitol) ligase subunit 2; | 95.82 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 95.78 | |
| COG0236 | 80 | AcpP Acyl carrier protein [Lipid metabolism / Seco | 95.77 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 95.75 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.72 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 95.68 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.6 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 95.58 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 95.54 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 95.47 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 95.46 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 95.43 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.42 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.39 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 95.35 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 95.32 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 95.27 | |
| PTZ00171 | 148 | acyl carrier protein; Provisional | 95.25 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.23 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 95.18 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 95.18 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 95.13 | |
| PRK08172 | 82 | putative acyl carrier protein IacP; Validated | 95.07 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 94.98 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.97 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.88 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.74 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.72 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.64 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 94.59 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 94.59 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 94.53 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 94.48 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 94.37 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 94.33 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.33 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 94.28 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 94.07 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 93.84 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 93.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 93.78 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.78 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 93.66 | |
| COG4880 | 603 | Secreted protein containing C-terminal beta-propel | 93.51 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 93.48 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 93.46 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 93.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.29 | |
| PF05567 | 335 | Neisseria_PilC: Neisseria PilC beta-propeller doma | 93.22 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 93.11 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 93.01 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 92.98 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 92.81 |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=547.54 Aligned_cols=414 Identities=23% Similarity=0.319 Sum_probs=337.7
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||+++++++++|.+.+++++++|.||+||+++.++...+... ........++|+|+++++++
T Consensus 3346 ~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~ 3421 (3956)
T PRK12467 3346 GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGD----AVCEAPYAPIGRPVAGRSIY 3421 (3956)
T ss_pred cccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccc----cccCCCCCCCccccCCCEEE
Confidence 45578899999999999999999999998888999999999999987776544211 01122457899999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.|+.|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||||||+|++++||.|+|+||+
T Consensus 3422 v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~--------~~g~r~yrTGDl~~~~~dG~l~~~GR~ 3493 (3956)
T PRK12467 3422 VLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFS--------GSGGRLYRTGDLARYRADGVIEYLGRI 3493 (3956)
T ss_pred EECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCC--------CCCceeeccchhheecCCCcEEEeccc
Confidence 998766 457789999999999999999999999999886652 135789999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+|||++|+||+|.|||++|.++|+|.+|+|+..... .+..+++++++..... ...+++++++++.||.||+|..+
T Consensus 3494 d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~-~~~~lva~v~~~~~~~---~~~~~l~~~l~~~Lp~y~vP~~~ 3569 (3956)
T PRK12467 3494 DHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGA-GGKQLVAYVVPADPQG---DWRETLRDHLAASLPDYMVPAQL 3569 (3956)
T ss_pred cceEeeceEeecHHHHHHHHhhCcccceEEEEEecCC-CCcEEEEEEeCCCCCc---ccHHHHHHHHhccCChhhCCCee
Confidence 9999999999999999999999999999999987543 4568999998765422 23468999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHH
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHN 329 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 329 (829)
+.+++||+|++|||||++|++..... ......+.+++|+.++++|+++|+++.|+.+||||++|||||+||+|+.+
T Consensus 3570 ~~l~~lP~t~~GKidR~~L~~~~~~~----~~~~~~p~~~~e~~l~~i~~~vL~~~~i~~~d~Ff~lGgdSl~a~~l~~~ 3645 (3956)
T PRK12467 3570 LVLAAMPLGPNGKVDRKALPDPDAKG----SREYVAPRSEVEQQLAAIWADVLGVEQVGVTDNFFELGGDSLLALQVLSR 3645 (3956)
T ss_pred eeeccCCCCCCCccchhhcCCCCccc----cccccCCCCHHHHHHHHHHHHHhCCCCCCCCcchhcccchHHHHHHHHHH
Confidence 99999999999999999999865432 22334577899999999999999999999999999999999999999876
Q ss_pred c------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhhhhhcccccCCccc
Q 003331 330 L------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKY 403 (829)
Q Consensus 330 l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y 403 (829)
+ .+++..+|++||+++||.++........... ....+....+.+++.|++.+..+.+..+++.+..++++|
T Consensus 3646 l~~~~g~~l~~~~lf~~pti~~la~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~h~~~r~~~~~~~l~~~l~~~~~~~ 3722 (3956)
T PRK12467 3646 IRQSLGLKLSLRDLMSAPTIAELAGYSPLGDVPVNLLL---DLNRLETGFPALFCRHEGLGTVFDYEPLAVILEGDRHVL 3722 (3956)
T ss_pred HHHHhCCCCCHHHHHhCCCHHHHHHHHhhcccccccch---hhhhhhhcccceeeechhhcchhhhHHHHHHhCCCCcEE
Confidence 5 4889999999999999999975332221111 111222222449999999999999999999999999999
Q ss_pred cCCcccccCCCCCc------------------cCCCCCC-eeeecccccee--eccccccccccccc
Q 003331 404 FKPELHHHKDGLPW------------------NLSSVPM-SCSFSRCNKVM--HEEKIRGNDLCGVN 449 (829)
Q Consensus 404 ~~~~~~~~~~~~~~------------------~~~~~~~-~~s~~~~~~~~--~~~~~~~~~~~~~~ 449 (829)
+++..+...++.+. +..||.+ |||+|+..+++ .+++..++.+....
T Consensus 3723 ~l~~~~~~~d~~~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~~~~ 3789 (3956)
T PRK12467 3723 GLTCRHLLDDGWQDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGGTLARLVAELLEREGESEAFLG 3789 (3956)
T ss_pred EEeccccccccCCccchHHHHHHHHHHHHHhccCCCeeeeeeecchHHHHHHHHHHHHcCCceeEEE
Confidence 99887654444321 1228999 99999988866 44555555554433
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=496.47 Aligned_cols=400 Identities=23% Similarity=0.332 Sum_probs=320.0
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.|.+.+ +++++|.||+||++..++.+...... ........+++|+|++++.++|+|
T Consensus 715 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~~~~~~~~--~~~~~~~~~~iG~p~~~~~~~i~d 791 (1296)
T PRK10252 715 SCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSWYPAFGEE--LAAVRGSSVPIGYPVWNTGLRILD 791 (1296)
T ss_pred cCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeeeeeccccc--ccccCCCCCCcccccCCCEEEEEC
Confidence 458999999999999999999998876 78999999999998877654432210 000122457899999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.|..|||+|+|+++++||+++|+.|.++|...+.. .+.+||+|||+|+++++|.++|+||.|++
T Consensus 792 ~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ 862 (1296)
T PRK10252 792 ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFA---------PGERMYRTGDVARWLDDGAVEYLGRSDDQ 862 (1296)
T ss_pred CCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCC---------CCCEEEecCceEEEcCCCcEEEecccCCe
Confidence 766 456789999999999999999999999999876542 25689999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEee------cCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHK------HQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||++|+||+|.|||++|.++|.|.+++|+... .......++++++....... ..++|+++++++||.||+|
T Consensus 863 ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~---~~~~l~~~l~~~Lp~~~~P 939 (1296)
T PRK10252 863 LKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPL---DTSALQAQLRERLPPHMVP 939 (1296)
T ss_pred EEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCC---CHHHHHHHHHhhCchhcCC
Confidence 99999999999999999999999999876542 11222468889887654321 2467999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHH
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l 326 (829)
..++.+++||+|++|||||++|++..... ......+.+++|+.+.++|+++|+.+.++.+++||++|||||+|++|
T Consensus 940 ~~~~~~~~lP~t~~GKidr~~L~~~~~~~----~~~~~~~~~~~e~~l~~~~~~~l~~~~~~~~~~ff~lGg~Sl~a~~l 1015 (1296)
T PRK10252 940 VVLLQLDQLPLSANGKLDRKALPLPELKA----QVPGRAPKTGTETIIAAAFSSLLGCDVVDADADFFALGGHSLLAMKL 1015 (1296)
T ss_pred cEEEEecCCCCCCCcChhHHhcCCCcccc----cccCCCCCCHHHHHHHHHHHHHhCCCCCCCCcCHHHcCCChHHHHHH
Confidence 99999999999999999999998643211 11233566789999999999999999999999999999999999999
Q ss_pred HHHc------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccc-cCcccccccccccCccccchhhhhhcccccC
Q 003331 327 AHNL------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWK-LNLEEDKEHQFHSGYSRTENHAVVSKRLKVN 399 (829)
Q Consensus 327 ~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 399 (829)
..+| .+++.++|++||+++|+++|.+...... ......... ....+++++++|+..|....|..++++|..+
T Consensus 1016 ~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lh~~~g~~~~~~~l~~~l~~~ 1094 (1296)
T PRK10252 1016 AAQLSRQFARQVTPGQVMVASTVAKLATLLDAEEDESR-RLGFGTILPLREGDGPTLFCFHPASGFAWQFSVLSRYLDPQ 1094 (1296)
T ss_pred HHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhccccccc-cccccceeecccCCCCCeEEecCCCCchHHHHHHHHhcCCC
Confidence 8876 3789999999999999999987543211 000000001 1123467999999999999999999999999
Q ss_pred CccccCCcccccCCCCC------------------ccCCCCCC-eeeecccccee
Q 003331 400 STKYFKPELHHHKDGLP------------------WNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 400 ~~~y~~~~~~~~~~~~~------------------~~~~~~~~-~~s~~~~~~~~ 435 (829)
.++|+++.+++.....+ .+..||++ |||+||.++++
T Consensus 1095 ~~v~~~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e 1149 (1296)
T PRK10252 1095 WSIYGIQSPRPDGPMQTATSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQG 1149 (1296)
T ss_pred CcEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHH
Confidence 99999887775321100 01228999 99999998877
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=332.07 Aligned_cols=352 Identities=39% Similarity=0.681 Sum_probs=299.5
Q ss_pred cccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 465 LWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 465 ~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+|++++++|+|++|+|+++|....|++|||++.+.++|+++|+.+|+..++.++++++++..| .+++|++.|.||.++
T Consensus 2 rW~vd~~kCVDaspLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgd--fVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 2 RWAVDLRKCVDASPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGD--FVVLGCYSGGLYFLC 79 (354)
T ss_pred ceeccchhhccCCcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEECC--EEEEEEccCcEEEEE
Confidence 699999999999999999999999999999999999999999999999999999999998654 799999999999999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
.+||...|.+.+.+.++..+.++.+++.||+|++|+++|++|+++...+|+.++++..+.+|+++..++.+|+++..|.+
T Consensus 80 ~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 80 VKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred ecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
.+.++++.+...+|......|+|.++... +..+.+++.+|.+.+++..|+++|++.+.++++..|+...-..+.|.++
T Consensus 160 lavt~~~~~~~~~w~~~~~~PiF~splcv--~~sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~ 237 (354)
T KOG4649|consen 160 LAVTKNPYSSTEFWAATRFGPIFASPLCV--GSSVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCESRPSCQQISLE 237 (354)
T ss_pred EEEccCCCCcceehhhhcCCccccCceec--cceEEEEEeccEEEEEcCCCcEEEeecCCCceecccccCCCcceEEEEe
Confidence 99999985558999999999999886654 4578888999999999988999999999999999998764334577777
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC-CcEEEEEccCCcEEEEEeecCcccccccccccc
Q 003331 705 SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI-DRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 783 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~ 783 (829)
.++- +++.-+..|.++|..+.+ .....+.++++.+....+..+ +.++...+.||+++++-...... .....+..
T Consensus 238 ~~~C-f~~~~p~~ghL~w~~~~g--~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~--~~~s~~g~ 312 (354)
T KOG4649|consen 238 NENC-FCAPLPIAGHLLWATQSG--TTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLA--EISSNGGE 312 (354)
T ss_pred cCCe-EEEeccccceEEEEecCC--cEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEeccccc--ccccCCCc
Confidence 7665 555555669999998865 344455555555555555444 66777888999999984432210 01111222
Q ss_pred ceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccccc
Q 003331 784 VQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 784 ~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.+.+...++++++|++|++.+++|++||+|++++|||+++++
T Consensus 313 lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~~~ 354 (354)
T KOG4649|consen 313 LQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDTWH 354 (354)
T ss_pred cceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccccC
Confidence 355666789999999999999999999999999999998763
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=505.69 Aligned_cols=334 Identities=27% Similarity=0.450 Sum_probs=282.4
Q ss_pred cchhhhhcc---CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcc
Q 003331 4 VLPALQSQH---NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSV 80 (829)
Q Consensus 4 l~~~l~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (829)
++|++.... ....+++||.+++|||+++++++++|.+.+|+++++|.||+|||+.+++++...... ......
T Consensus 3966 ~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~-----~~~~~~ 4040 (4334)
T PRK05691 3966 SVPSLIQGMLAEDRQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLAS-----TRGSYL 4040 (4334)
T ss_pred eCHHHHHHHHhhccccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEccccc-----ccCCcC
Confidence 456554322 234578999999999999999999999998899999999999999888765433211 122457
Q ss_pred ccccccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE
Q 003331 81 PIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 157 (829)
Q Consensus 81 ~~G~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 157 (829)
++|+|++++.++|+|+.. +.|..|||+|+|+++++||+++|+.|+++|+..|.. ..+.+||||||++++
T Consensus 4041 ~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~--------~~~~~~yrTGDl~~~ 4112 (4334)
T PRK05691 4041 PIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFG--------APGERLYRTGDLARR 4112 (4334)
T ss_pred CCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhcccCCCC--------CCCceeeccCcceee
Confidence 899999999999998766 467789999999999999999999999999986653 125789999999999
Q ss_pred ccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHH
Q 003331 158 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS 237 (829)
Q Consensus 158 ~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~ 237 (829)
++||.|+|+||.|+|||++|+||+|.|||++|.++|+|.+|+|+.... ..+..++++++............++|+++++
T Consensus 4113 ~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~-~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~ 4191 (4334)
T PRK05691 4113 RSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEG-VNGKHLVGYLVPHQTVLAQGALLERIKQRLR 4191 (4334)
T ss_pred cCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecC-CCCcEEEEEEeCCcccccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876544 3446789999887655444456678999999
Q ss_pred hcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccC
Q 003331 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMG 317 (829)
Q Consensus 238 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lG 317 (829)
+.||.||+|..++.+++||+|++|||||++|+++..... .......+.+++|+.|+++|+++|+.+.|+.+||||++|
T Consensus 4192 ~~Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~--~~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lG 4269 (4334)
T PRK05691 4192 AELPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQL--QSQAYLAPRNELEQTLATIWADVLKVERVGVHDNFFELG 4269 (4334)
T ss_pred hhCChhhcCcceeecccCCCCCCCcccHhhcCCCccccc--cccccCCCCCHHHHHHHHHHHHHhCCCcCCCCCchhhcC
Confidence 999999999999999999999999999999987532111 112234577899999999999999999999999999999
Q ss_pred CChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 318 GNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 318 gdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
||||+||+|+.++ .+++.+||++||+++||.++...
T Consensus 4270 g~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4270 GHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred CcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 9999999998764 47889999999999999999753
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=493.43 Aligned_cols=324 Identities=30% Similarity=0.483 Sum_probs=276.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++.|.+.+++..++|.||+||++++++.+.+.... .......++|+|++++.++|+
T Consensus 1831 ~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~----~~~~~~~~iG~p~~~~~~~vl 1906 (3956)
T PRK12467 1831 EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKD----LEGRDSVPIGQPIANLSTYIL 1906 (3956)
T ss_pred ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccc----cccCCCCCcccccCCCEEEEE
Confidence 4578999999999999999999999988888999999999999888765543211 112245789999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.|..|||+|+|+++++||+++|+.|+++|+..|... .+.+||+|||++++++||.|+|+||.|+
T Consensus 1907 d~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~--------~~~r~yrTGDl~~~~~dG~l~~~GR~D~ 1978 (3956)
T PRK12467 1907 DASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGT--------VGSRLYRTGDLARYRADGVIEYLGRIDH 1978 (3956)
T ss_pred CCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCC--------CCccceeccceEEECCCCCEEEecccCc
Confidence 8766 3567899999999999999999999999998766431 2568999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHhcCCCCCcC
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~l~~~l~~~~~p 246 (829)
|||++|+||+|.|||++|.++|+|.+|+|++.+ ...+..+++++++...... .....+++++++++.||.||+|
T Consensus 1979 qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP 2057 (3956)
T PRK12467 1979 QVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVP 2057 (3956)
T ss_pred eEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCc
Confidence 999999999999999999999999999999886 3445689999987654221 1124468999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHH
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHV 326 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l 326 (829)
..++.+++||+|++|||||++|++....... .....+.+++|+.++++|+++|+++.|+.+||||++|||||+||+|
T Consensus 2058 ~~~~~l~~lP~t~~GKidr~~L~~~~~~~~~---~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l 2134 (3956)
T PRK12467 2058 AHLVFLARMPLTPNGKLDRKALPAPDASELQ---QAYVAPQSELEQRLAAIWQDVLGLEQVGLHDNFFELGGDSIISIQV 2134 (3956)
T ss_pred hhhhhhhcCCCCCCCCcchhhCCCCcccccc---ccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhcCCchHHHHHH
Confidence 9999999999999999999999876543222 2234567889999999999999999999999999999999999999
Q ss_pred HHHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 327 AHNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 327 ~~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
++++ .+++++||++||+++||..+....
T Consensus 2135 ~~~~~~~g~~l~~~~if~~~ti~~la~~~~~~~ 2167 (3956)
T PRK12467 2135 VSRARQAGIRFTPKDLFQHQTVQSLAAVAQEGD 2167 (3956)
T ss_pred HHHHHHcCCCCCHHHHhcCCCHHHHHHHHhhcc
Confidence 8875 488999999999999999886543
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=456.22 Aligned_cols=351 Identities=25% Similarity=0.387 Sum_probs=276.9
Q ss_pred cchhhhhcc---CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccc--ccCCCC
Q 003331 4 VLPALQSQH---NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL--EMSTLK 78 (829)
Q Consensus 4 l~~~l~~~~---~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~--~~~~~~ 78 (829)
++|++.+.+ ....+++||.+++|||++++.+.+++.+.+++++++|.||+||++++++++......... ......
T Consensus 512 ~~Ps~~~~l~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1389)
T TIGR03443 512 LTPAMGQLLSAQATTPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKD 591 (1389)
T ss_pred eCHHHHHHHHhcccccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccC
Confidence 455554332 234578999999999999999999999888899999999999998877754432111000 000113
Q ss_pred ccccccccCCcEEEEecCCC-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccC-------------c
Q 003331 79 SVPIGLPISNCDIVLVESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC-------------S 140 (829)
Q Consensus 79 ~~~~G~p~~~~~~~i~d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~-------------~ 140 (829)
..++|+|+++++++|+|++. +.+..|||+|+|+++++||+++|+.|.++|+..+....... .
T Consensus 592 ~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1389)
T TIGR03443 592 VMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREF 671 (1389)
T ss_pred cCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhccCCcccCcccccccccccccccccc
Confidence 57899999999999998643 45778999999999999999999999999976543110000 0
Q ss_pred CCCCCcceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 141 VSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 141 ~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
.....++||+|||+|++++||.|+|+||.|||||++|+||+|.|||++|.+||.|.+++|+..++......+++++++..
T Consensus 672 ~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~ 751 (1389)
T TIGR03443 672 WLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQD 751 (1389)
T ss_pred cCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccC
Confidence 00123689999999999999999999999999999999999999999999999999999988877766778999998762
Q ss_pred CCCc-----------------------hHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccc
Q 003331 221 KKTS-----------------------SEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTIS 277 (829)
Q Consensus 221 ~~~~-----------------------~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~ 277 (829)
.... .....++++++++++||.||+|..++++++||+|++|||||++|+..+.....
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~ 831 (1389)
T TIGR03443 752 KSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLA 831 (1389)
T ss_pred ccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhh
Confidence 2110 01235689999999999999999999999999999999999999865433221
Q ss_pred cc-----cccccccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHH
Q 003331 278 AQ-----HDADETKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPS 344 (829)
Q Consensus 278 ~~-----~~~~~~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~ 344 (829)
.. ......+.+++++.++++|+++|+. ..++.+++||++|||||+|++|+++| .+++..+|++||+.
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~ 911 (1389)
T TIGR03443 832 AVAKNRSASAADEEFTETEREIRDLWLELLPNRPATISPDDSFFDLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIK 911 (1389)
T ss_pred hhhccccccccCCCCCHHHHHHHHHHHHHhCCCccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHH
Confidence 10 1122345578899999999999986 45999999999999999999998876 37888999999999
Q ss_pred HHHHHHHhhc
Q 003331 345 KLEIALLEKK 354 (829)
Q Consensus 345 ~la~~l~~~~ 354 (829)
+|+.+|.+..
T Consensus 912 ~la~~l~~~~ 921 (1389)
T TIGR03443 912 GFAKEVDRLK 921 (1389)
T ss_pred HHHHHHHhhh
Confidence 9999997654
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=421.18 Aligned_cols=314 Identities=20% Similarity=0.263 Sum_probs=258.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||++.++..... ......++|+|++++++++
T Consensus 256 ~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~---------~~~~~~~iG~p~~~~~v~i 326 (705)
T PRK06060 256 PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRV---------DEWRLGTLGRVLPPYEIRV 326 (705)
T ss_pred cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccC---------CCCCcCcccccCCCcEEEE
Confidence 3457899999999999999999999999988999999999999765432211 1124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+|+|++++.||+++|+.+.. .++||+|||+|+++++|+++|+||.|
T Consensus 327 ~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~------------------~~~~~~TGDl~~~~~dG~l~~~GR~d 388 (705)
T PRK06060 327 VAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVA------------------NEGWLDTRDRVCIDSDGWVTYRCRAD 388 (705)
T ss_pred ECCCCCCCCCCCceEEEEccchhhhhhhCCCccccc------------------CCCcEECCeeEEECCCceEEEecccC
Confidence 98776 3566799999999999999999875321 35899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.|||++|.+||.|.+++|++.++...+..+++++++............+++++++++||.|++|..++
T Consensus 389 d~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~ 468 (705)
T PRK06060 389 DTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFA 468 (705)
T ss_pred ceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEE
Confidence 99999999999999999999999999999999888777778899998775543333445689999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhcccccccc------cc---c--------ccc---------------------ccccccHHHH
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSFTI------SA---Q--------HDA---------------------DETKASDLLQ 292 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~~~------~~---~--------~~~---------------------~~~~~~~~~~ 292 (829)
++++||+|++||+||++|++.+.... .. . ... .......+.+
T Consensus 469 ~v~~iP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 548 (705)
T PRK06060 469 VVDRLPRTPNGKLVRGALRKQSPTKPIWELSLTEPGSGVRAQRDDLSASNMTIAGGNDGGATLRERLVALRQERQRLVVD 548 (705)
T ss_pred EeecCCCCcchhhHHHHHHhhccchhhhhhhccCcccCchhhhccccCCCcccCCCCCccHHHHHHHhhCcHHHHHHHHH
Confidence 99999999999999999987542100 00 0 000 0001122445
Q ss_pred HHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 293 VIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 293 ~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++..|+++|+.. .++.+++||++|||||+|++|.++| .++...+|++||+.+|+.+|.+..
T Consensus 549 ~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 549 AVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 6888899999874 4999999999999999999998876 478899999999999999998764
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=489.34 Aligned_cols=316 Identities=29% Similarity=0.467 Sum_probs=273.8
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||++++++++++.+.+++++++|.||+||+++.++...+.. ......++|+|+++++++
T Consensus 765 ~~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~ 837 (5163)
T PRK12316 765 DVASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVE-------EGGDSVPIGRPIANLACY 837 (5163)
T ss_pred ccccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEeccc-------ccCCCCCCccccCCCEEE
Confidence 4456789999999999999999999998888899999999999997766544321 122567899999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.|..|||+|+|+++++||+++|+.|++.|+..+.. .+.+||+|||+|++++||.|+|+||+
T Consensus 838 i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~---------~~~~~y~TGDl~~~~~dG~l~~~GR~ 908 (5163)
T PRK12316 838 ILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFV---------AGERMYRTGDLARYRADGVIEYAGRI 908 (5163)
T ss_pred EECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCC---------CCCeeEecCccEEECCCCCEEeeccc
Confidence 999876 356789999999999999999999999999875532 25689999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|||||++|+||+|.|||++|.+||.|.+|+|++.+ +..++|+|++...... ..++++++++++||.||+|..+
T Consensus 909 d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~---~~~~l~~~l~~~Lp~y~vP~~i 981 (5163)
T PRK12316 909 DHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGD---WREALKAHLAASLPEYMVPAQW 981 (5163)
T ss_pred CCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCC---CHHHHHHHHHhhCCCccCCCeE
Confidence 99999999999999999999999999999999886 3478999988764322 2468999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHH
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHN 329 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 329 (829)
+++++||+|++|||||++|++...... ......+.+++|+.++.+|+++|+++.++.++|||++|||||+||+|+++
T Consensus 982 ~~v~~lP~t~~GKidr~~L~~~~~~~~---~~~~~~~~~~~e~~l~~iw~~vL~~~~i~~~~~Ff~lGgdSl~a~~l~~~ 1058 (5163)
T PRK12316 982 LALERLPLTPNGKLDRKALPAPEASVA---QQGYVAPRNALERTLAAIWQDVLGVERVGLDDNFFELGGDSIVSIQVVSR 1058 (5163)
T ss_pred EEHhhCCCCCCCChhHHhhcCcccccc---ccccCCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhcCCcHHHHHHHHHH
Confidence 999999999999999999987543221 12334567889999999999999999999999999999999999999877
Q ss_pred c-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 330 L-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 330 l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+ ++++++||++||+++||.++....
T Consensus 1059 ~~~~g~~l~~~~~~~~~ti~~la~~~~~~~ 1088 (5163)
T PRK12316 1059 ARQAGIQLSPRDLFQHQTIRSLALVAKAGQ 1088 (5163)
T ss_pred HHHhCCCCCHHHHhcCCCHHHHHHHHHhcc
Confidence 5 588999999999999999986643
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=490.73 Aligned_cols=311 Identities=28% Similarity=0.458 Sum_probs=269.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.++|.. +++++|.||+||++++++.+.+.. ......++|+|+++++++|
T Consensus 3307 ~~~~~~lr~~~~gGe~l~~~~~~~~~~---~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~iG~p~~~~~~~i 3376 (5163)
T PRK12316 3307 AHRCTSLKRIVCGGEALPADLQQQVFA---GLPLYNLYGPTEATITVTHWQCVE-------EGKDAVPIGRPIANRACYI 3376 (5163)
T ss_pred cccCCcceEEEEccccCCHHHHHHHHh---CCcEeeccCCCccEeeEeEEeccC-------CCCCCCccceecCCCEEEE
Confidence 455789999999999999999999983 678999999999998887665421 1224678999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.|..|||+|+|+++++||+++|+.|+++|+..|.. .+.+||+|||+|++++||.|+|+||+|
T Consensus 3377 ~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~~~~t~~~f~~~p~~---------~~~~~y~TGDl~~~~~dG~l~~~GR~d 3447 (5163)
T PRK12316 3377 LDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFV---------PGERLYRTGDLARYRADGVIEYIGRVD 3447 (5163)
T ss_pred ECCCCCCCCCCCCceEEecccccchhcCCChhhchhhCCCCCCC---------CCCeeEecCceEEECCCCCEEEecccC
Confidence 98776 457789999999999999999999999999886652 257899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
+|||++|+||+|.|||.+|.++|.|.+|+|+... +..++|++++..... ...+++++++++.||.||+|..++
T Consensus 3448 ~qvKi~G~rIel~eIE~~l~~~~~V~~a~v~~~~----~~~l~a~vv~~~~~~---~~~~~l~~~l~~~Lp~ymvP~~~~ 3520 (5163)
T PRK12316 3448 HQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAG---DLREALKAHLKASLPEYMVPAHLL 3520 (5163)
T ss_pred CeEeeCcEeeChHHHHHHHHhCCCcceEEEEEcc----CCeEEEEEEcCCcCc---ccHHHHHHHHHhhCCcccCcceee
Confidence 9999999999999999999999999999998876 347899998765432 234679999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL 330 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l 330 (829)
.+++||+|++||+||++|++...... ......+.+++|+.++++|+++|+.+.|+.+||||++|||||+||+|+.++
T Consensus 3521 ~~~~lP~t~~GKvdr~~L~~~~~~~~---~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~lGGdSl~a~~l~~~~ 3597 (5163)
T PRK12316 3521 FLERMPLTPNGKLDRKALPRPDAALL---QQDYVAPVNELERRLAAIWADVLKLEQVGLTDNFFELGGDSIISLQVVSRA 3597 (5163)
T ss_pred eHhhcCCCCCcchhHHhcCCCccccc---cccccCCCCHHHHHHHHHHHHHhCCCCCCCCCCchhcCCccHHHHHHHHHH
Confidence 99999999999999999987543221 122345778999999999999999999999999999999999999998765
Q ss_pred -----CCcchhhhcCCCHHHHHHHHHhh
Q 003331 331 -----GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 331 -----~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++.+||++||++.||..+...
T Consensus 3598 ~~~g~~~~~~~~f~~~ti~~la~~~~~~ 3625 (5163)
T PRK12316 3598 RQAGIRFTPKDLFQHQTIQGLARVARVG 3625 (5163)
T ss_pred HHcCCCCCHHHHhcCCCHHHHHHHHhhc
Confidence 48899999999999999877543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=479.84 Aligned_cols=326 Identities=25% Similarity=0.414 Sum_probs=276.5
Q ss_pred cchhhhhcc----CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCc
Q 003331 4 VLPALQSQH----NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKS 79 (829)
Q Consensus 4 l~~~l~~~~----~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~ 79 (829)
++|++.+.. ....+++||.+++|||++++++.++|.+.+|+++++|.||+||+++.++.+.+... ....
T Consensus 1370 ~~Ps~l~~l~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~ 1442 (4334)
T PRK05691 1370 FVPPLLQLFIDEPLAAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAE-------DGER 1442 (4334)
T ss_pred CcHHHHHHHHhCcccccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccc-------cCCC
Confidence 455554332 33567899999999999999999999999989999999999999987775543221 1245
Q ss_pred cccccccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEE
Q 003331 80 VPIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156 (829)
Q Consensus 80 ~~~G~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 156 (829)
.++|+|++++.++|+|+++ +.|..|||+|+|+++++||+++|+.|+++|+..+.. ..+.+||+|||+|+
T Consensus 1443 ~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~--------~~~~r~yrTGDl~~ 1514 (4334)
T PRK05691 1443 SPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLG--------EDGARLYRTGDRAR 1514 (4334)
T ss_pred CcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCC--------CCCceEEEccceEE
Confidence 6899999999999998776 456789999999999999999999999999876542 12468999999999
Q ss_pred EccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHH
Q 003331 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV 236 (829)
Q Consensus 157 ~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l 236 (829)
+++||.++|+||+|+|||++|+||+|.|||.+|.++|.|.+|+|+...... +..++++++........ .++|++++
T Consensus 1515 ~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~-~~~lva~~~~~~~~~~~---~~~l~~~l 1590 (4334)
T PRK05691 1515 WNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAA-GAQLVGYYTGEAGQEAE---AERLKAAL 1590 (4334)
T ss_pred ECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCC-CCEEEEEEEeCCCCCCC---HHHHHHHH
Confidence 999999999999999999999999999999999999999999998766543 36788888876543222 35899999
Q ss_pred HhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCcccc
Q 003331 237 SSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTM 316 (829)
Q Consensus 237 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~l 316 (829)
+++||.||+|..++.+++||+|++|||||++|++.... ......+.+++|+.++++|+++|+.+.|+.+||||++
T Consensus 1591 ~~~Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~~~-----~~~~~~p~~~~e~~l~~iw~~vL~~~~i~~~d~Ff~l 1665 (4334)
T PRK05691 1591 AAELPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQ-----QREHVEPRTELQQQIAAIWREVLGLPRVGLRDDFFAL 1665 (4334)
T ss_pred HHhCccccCCcEEEEccccCCCCCCCcChhhcCccccc-----ccccCCCCCHHHHHHHHHHHHHhCCCCCCCCCchHHh
Confidence 99999999999999999999999999999999764321 1123456788999999999999999999999999999
Q ss_pred CCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 317 GGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 317 GgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
|||||+||+|++++ .+++.++|++||+++||.++...
T Consensus 1666 GGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~ 1708 (4334)
T PRK05691 1666 GGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVARI 1708 (4334)
T ss_pred cccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhh
Confidence 99999999998764 47899999999999999998754
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=351.48 Aligned_cols=235 Identities=28% Similarity=0.393 Sum_probs=212.1
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
...++++||.+.+||+++++++.+++.+.+|...+.+.||+||+++.++...... +.++.++|+++++..+.
T Consensus 294 ~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~--------e~k~~svG~~~~g~~~~ 365 (537)
T KOG1176|consen 294 KKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP--------ERKPGSVGRLLPGVRVK 365 (537)
T ss_pred CcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc--------cCcccccCccccceEEE
Confidence 3477999999999999999999999999998899999999999996665432211 13678899999999998
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+.++.+ ++...||||++|++++.||++||+.|.+.|.. ++||+|||+|.+|+||+|++++|.
T Consensus 366 v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~---------------~GW~~TGDiGy~D~DG~l~IvdR~ 430 (537)
T KOG1176|consen 366 VLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDD---------------DGWFHTGDLGYFDEDGYLYIVDRS 430 (537)
T ss_pred eeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhccc---------------CCccccCceEEEcCCCeEEEecch
Confidence 887766 45677999999999999999999999998853 499999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
+|+||.+|+.|+|.|||++|..||.|.||+|++.+++..++.++|+|+.+.+....+ ++|.+++++++++|++|..+
T Consensus 431 KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte---~di~~~v~k~l~~y~~~~~V 507 (537)
T KOG1176|consen 431 KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTE---KDIIEYVRKKLPAYKLPGGV 507 (537)
T ss_pred hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCH---HHHHHHHHhhCChhhccCeE
Confidence 999999999999999999999999999999999999999999999999998554444 78999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||+|+.|++.+.
T Consensus 508 ~Fvd~lPKs~~GKi~R~~lr~~~~ 531 (537)
T KOG1176|consen 508 VFVDELPKTPNGKILRRKLRDIAK 531 (537)
T ss_pred EEeccCCCCCcchHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=336.48 Aligned_cols=232 Identities=28% Similarity=0.408 Sum_probs=205.1
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
..+++++||.+.+.||||++++++++.+.+ ++.|.+.||+||++........ ..+..+.|+|+||+++.
T Consensus 285 ~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~~gqTEtg~~~~~~~~----------~~~~g~~g~p~pG~~~~ 353 (528)
T COG0365 285 EPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDIYGQTETGMGFIAGRP----------PVKNGSSGLPLPGYAVR 353 (528)
T ss_pred ccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEeccccccccCccccCCCC----------CcCCCCCCCCCCCceeE
Confidence 457899999999999999999999999998 6999999999999833322111 11334459999999999
Q ss_pred EecCCCC---CCCCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
++|+++. ++. |+|+++.+ +++++||++|+.+.+.|. ++||.|||.+++|+||+++|+|
T Consensus 354 vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~----------------~~~y~tGD~~~~DedGy~~i~G 416 (528)
T COG0365 354 RVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYF----------------GRWYRTGDWAERDEDGYFWLHG 416 (528)
T ss_pred EECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHh----------------hceeecCceeEEccCCCEEEEe
Confidence 9998763 234 99999987 999999999977777663 2399999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||+.|+||.+.|||++|.+||.|.||+|++.+++..++.++|||+++++.... ++.++|++++++.+.+++.|+
T Consensus 417 R~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~ 495 (528)
T COG0365 417 RSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPR 495 (528)
T ss_pred eccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCc
Confidence 9999999999999999999999999999999999999999999999999999987666 888999999988888899999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+.++++||+|.||||.|+.|++...
T Consensus 496 ~i~fv~~LPkT~sGKI~R~~lr~~~~ 521 (528)
T COG0365 496 KIRFVDELPKTASGKIQRRLLRKILH 521 (528)
T ss_pred eEEEecCCCCCCcccHHHHHHHHHHh
Confidence 99999999999999999999998654
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=337.43 Aligned_cols=240 Identities=23% Similarity=0.266 Sum_probs=206.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCC--ceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.++++||++++++++++.+.++. +.+.+.||+||+++.++...... ......++|+|+++++++
T Consensus 394 ~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~-------~~~~~gs~G~p~~g~~v~ 466 (666)
T PLN02654 394 HSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-------WPQKPGSATFPFFGVQPV 466 (666)
T ss_pred CChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCC-------CCCCCCccCCCCCCceEE
Confidence 467899999999999999999999998853 68999999999986544211110 012456799999999999
Q ss_pred EecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++. .+..|||++++ |++++|||++++.+...|.. ...+||+|||++++++||.++++|
T Consensus 467 i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGD~~~~d~dG~l~i~G 533 (666)
T PLN02654 467 IVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFK-------------PFAGYYFSGDGCSRDKDGYYWLTG 533 (666)
T ss_pred EECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhh-------------cCCCEEEeCceEEECCCCcEEEee
Confidence 9988764 23469999999 78999999999877665532 125799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++|+++++....+.+.++|+++++++|+.+++|+
T Consensus 534 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~ 613 (666)
T PLN02654 534 RVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPD 613 (666)
T ss_pred eccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence 99999999999999999999999999999999999999888889999999987655555667789999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++|||+|++|++.+..
T Consensus 614 ~i~~v~~lP~T~sGKi~r~~l~~~~~~ 640 (666)
T PLN02654 614 KIHWAPGLPKTRSGKIMRRILRKIASR 640 (666)
T ss_pred EEEECCCCCCCCCcCchHHHHHHHHcC
Confidence 999999999999999999999987653
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=294.50 Aligned_cols=238 Identities=23% Similarity=0.302 Sum_probs=208.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.++.||+++|+++++.+.....=..+...||+|||+...+.....+.+ +...-++|+.+++.+..+
T Consensus 346 ~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~------~~~~ksVG~~m~h~Ea~i 419 (596)
T KOG1177|consen 346 QVDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPP------EERIKSVGHLMDHYEAAI 419 (596)
T ss_pred cCchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCH------HHHHhhhhhccccccccc
Confidence 35689999999999999999999998866434588899999999776654333322 224567999999999999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|.++. .+..|||+++|.+.+.|||++++.|.+... .++||+|||++.++++|.+.++||.+
T Consensus 420 v~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~---------------~drW~~TGDi~~m~enG~i~iVGRsk 484 (596)
T KOG1177|consen 420 VDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIG---------------NDRWYDTGDIAVMDENGTIEIVGRSK 484 (596)
T ss_pred ccCCCCccccCCCceEEEEechhheeecCCcccchhhcc---------------cccceecCceEEEcCCCcEEEEEccc
Confidence 997774 455699999999999999999998887653 58999999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+|+.+|++|+|.|||+.|.+||.|.++.|++.+++..++.++|++.+....... ...++|+.+++.++..+.+|++|+
T Consensus 485 dmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFKiPky~v 563 (596)
T KOG1177|consen 485 DMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFKIPKYFV 563 (596)
T ss_pred CeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhcccccccCCcEEE
Confidence 9999999999999999999999999999999999999999999999998775542 456789999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|.+|||+|-+++++..
T Consensus 564 f~~~FPlT~tGKIqKFeir~~~k 586 (596)
T KOG1177|consen 564 FVDEFPLTTTGKIQKFEIREMSK 586 (596)
T ss_pred EeccCcccccccchhHHHHHHHH
Confidence 99999999999999999987654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=299.59 Aligned_cols=318 Identities=22% Similarity=0.395 Sum_probs=258.0
Q ss_pred ccccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE
Q 003331 459 RGFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV 533 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v 533 (829)
...++++|++++++++. ++|++ .++.||+++.+|.|+++|..||+++|+++++..+..++.+ +++.+|+
T Consensus 37 ~~~~~~~W~~~~~~~~~~~~~~~~p~v----~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v 110 (377)
T TIGR03300 37 TVKVDQVWSASVGDGVGHYYLRLQPAV----AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFV 110 (377)
T ss_pred cCcceeeeEEEcCCCcCccccccceEE----ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEE
Confidence 34578899999999875 68887 5889999999999999999999999999988876555544 4578999
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-----ccccee
Q 003331 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-----FGSPAI 608 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-----~~~~~~ 608 (829)
++.++.|++||.++|+++|++...+.+.+.|++.+ +.+++++.++.|+++|.++|+.+|++...... .++|++
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~ 188 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI 188 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE
Confidence 99999999999999999999988888888887754 78999999999999999999999998765432 356666
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.+ +.+|+++.+|.++++|+++ |+.+|+.....+.. ....+...++.+|+++.+|.++++| .+|+++
T Consensus 189 ~~--~~v~~~~~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 189 AD--GGVLVGFAGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred EC--CEEEEECCCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 65 7899999999999999988 99999876432210 0111223578999999999999999 999999
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCccccccccccccccccccccCCCcEEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
|+.+... ...| ...++.||+++.+|.|+++|..+|+.+|++. .......+|.. .++.++++
T Consensus 265 W~~~~~~--~~~p---~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-------------~g~~l~~~ 326 (377)
T TIGR03300 265 WKRDASS--YQGP---AVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-------------VGGYLVVG 326 (377)
T ss_pred EeeccCC--ccCc---eEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-------------ECCEEEEE
Confidence 9987432 2333 2347899999999999999999999999873 33333333332 27899999
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCC-cccccceEECCEEEEeeeCCeEEEE
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~l~~~ 819 (829)
+.+|.|+++|..+| +..++.++.+ .+.++|++.++.||+++.||.||||
T Consensus 327 ~~~G~l~~~d~~tG-------------~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 327 DFEGYLHWLSREDG-------------SFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred eCCCEEEEEECCCC-------------CEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 99999999998876 6677777766 5788999999999999999999997
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=334.91 Aligned_cols=236 Identities=19% Similarity=0.308 Sum_probs=202.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++++.+ ++++++.||+||+++.++.. ... ......++|+|+++++++|+
T Consensus 377 ~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~-~~~-------~~~~~~s~G~p~~g~~~~i~ 447 (647)
T PTZ00237 377 YDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYC-YGH-------INIPYNATGVPSIFIKPSIL 447 (647)
T ss_pred cCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhcc-CCC-------CCCCCCCCccCcCCceEEEE
Confidence 3578999999999999999999999988 68999999999998544321 110 11234679999999999999
Q ss_pred cCCCC---CCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 95 ESDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
|+++. .++.|||++++| +++.|||++++.+.+.|.. ..+||+|||+|+++++|+++|+||
T Consensus 448 d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~--------------~~g~~~TGDlg~~d~dG~l~i~GR 513 (647)
T PTZ00237 448 SEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK--------------FPGYYNSGDLGFKDENGYYTIVSR 513 (647)
T ss_pred CCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhC--------------CCCEEECCcEEEECCCCeEEEEec
Confidence 98763 466799999986 7899999999887766632 257999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC----chHHHHHHHHHHHHhcCCCCC
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT----SSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~l~~~l~~~l~~~~ 244 (829)
.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++.... ..+.+.++|+++++++|+.++
T Consensus 514 ~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~ 593 (647)
T PTZ00237 514 SDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLA 593 (647)
T ss_pred cCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999999999999887788999999874321 234566788999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 245 IPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+|+.++++++||+|++|||+|+.|++.+.
T Consensus 594 ~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~ 622 (647)
T PTZ00237 594 VLRKIIIVNQLPKTKTGKIPRQIISKFLN 622 (647)
T ss_pred cCcEEEEcCCCCCCCCccEeHHHHHHHHc
Confidence 99999999999999999999999998764
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=335.40 Aligned_cols=240 Identities=24% Similarity=0.304 Sum_probs=206.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ ++++++.||+||+++.++...... ......++|+|+++++++
T Consensus 355 ~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~-------~~~~~~~~G~p~~g~~~~ 427 (625)
T TIGR02188 355 HDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGA-------TPTKPGSATLPFFGIEPA 427 (625)
T ss_pred CCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCC-------CCcCCCcccCCcCCceEE
Confidence 45789999999999999999999998875 378999999999987654321110 112456799999999999
Q ss_pred EecCCCC----CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 93 LVESDTV----KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 93 i~d~~~~----~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++|+++. +++.|||+|+| |++++|||++++.+...|.. ...+||+|||+++++++|.++++
T Consensus 428 i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l~i~ 494 (625)
T TIGR02188 428 VVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFS-------------PFPGYYFTGDGARRDKDGYIWIT 494 (625)
T ss_pred EECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhc-------------cCCCEEECCceEEEcCCCcEEEE
Confidence 9987663 46679999999 68999999998766655532 13569999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+.....+...++|++++++.|+.+++|
T Consensus 495 GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P 574 (625)
T TIGR02188 495 GRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKP 574 (625)
T ss_pred ecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCccC
Confidence 99999999999999999999999999999999999999888888999999998776555556788999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
..++++++||+|++||++|+.|++.+..
T Consensus 575 ~~i~~v~~lP~t~sGKi~r~~l~~~~~~ 602 (625)
T TIGR02188 575 DKIRFVPGLPKTRSGKIMRRLLRKIAAG 602 (625)
T ss_pred cEEEECCCCCCCCCccchHHHHHHHHcC
Confidence 9999999999999999999999987654
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.71 Aligned_cols=240 Identities=24% Similarity=0.310 Sum_probs=204.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ ++++++.||+||++..++...... ......++|+|+++++++
T Consensus 364 ~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~~vG~p~~g~~~~ 436 (637)
T PRK00174 364 YDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGA-------TPLKPGSATRPLPGIQPA 436 (637)
T ss_pred CCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCC-------CCcCCCcccCCCCCceEE
Confidence 45789999999999999999999988874 378999999999987554321110 112345799999999999
Q ss_pred EecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++. .++.|||+|+| |++++|||++++.+.+.|.. ..++||+|||+++++++|.++|+|
T Consensus 437 i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l~~~G 503 (637)
T PRK00174 437 VVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFS-------------TFKGMYFTGDGARRDEDGYYWITG 503 (637)
T ss_pred EECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhc-------------CCCCEEECCceEEEcCCCcEEEEE
Confidence 9998763 46679999999 69999999998766554422 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.++...++.+++++++.+.....+...++|++++++.|+.+++|.
T Consensus 504 R~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~ 583 (637)
T PRK00174 504 RVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPD 583 (637)
T ss_pred ecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCC
Confidence 99999999999999999999999999999999999998888889999999887654445566789999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++||++|++|++....
T Consensus 584 ~i~~v~~lP~t~~GKi~R~~L~~~~~~ 610 (637)
T PRK00174 584 VIQFAPGLPKTRSGKIMRRILRKIAEG 610 (637)
T ss_pred EEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 999999999999999999999987543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=329.30 Aligned_cols=232 Identities=29% Similarity=0.440 Sum_probs=202.9
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 98 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~ 98 (829)
+||.++.||+++++++++++.+.++...+++.||+||++..++...... . ......+|.|+++++++|+|+++
T Consensus 292 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~-~------~~~~~~~G~~~pg~~v~Ivd~~~ 364 (534)
T COG0318 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD-L------LAKPGSVGRPLPGVEVRIVDPDG 364 (534)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCch-h------hhcCCcccccCCCcEEEEEeCCC
Confidence 3999999999999999999999997678999999999997666543222 1 11344559999999999999765
Q ss_pred C---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEE
Q 003331 99 V---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175 (829)
Q Consensus 99 ~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~ 175 (829)
. ++..|||+|+||.++.|||++|+.|.+.|.. ++||+|||+|++|++|.++|+||.+|+||.
T Consensus 365 ~~~~pg~vGei~irgp~v~~GY~~~pe~t~~~f~~---------------~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~ 429 (534)
T COG0318 365 GEVLPGEVGEIWVRGPNVMKGYWNRPEATAEAFDE---------------DGWLRTGDLGYVDEDGYLYIVGRLKDLIIS 429 (534)
T ss_pred CccCCCCceEEEEECchhhhhhcCChHHHHHhhcc---------------CCeeeecceEEEcCCccEEEEeccceEEEe
Confidence 2 3557999999999999999999999987732 489999999999999999999999999999
Q ss_pred CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcc
Q 003331 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSL 255 (829)
Q Consensus 176 ~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~l 255 (829)
+|++|+|.|||.++.+||.|.+++|++.+++..++.++|+++++.... .....++|+++++++++.+.+|+.++++++|
T Consensus 430 gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~-~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~l 508 (534)
T COG0318 430 GGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDEL 508 (534)
T ss_pred CCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCC-CCCCHHHHHHHHHhhhhcccCCeEEEEeCCC
Confidence 999999999999999999999999999999999999999999987632 1124578999999999999999999999999
Q ss_pred cCCCCCCcchhhhccccc
Q 003331 256 PMTSSGKVDYASLSASTS 273 (829)
Q Consensus 256 P~t~~GKi~r~~l~~~~~ 273 (829)
|+|++||++|++|++.+.
T Consensus 509 P~t~sGKi~r~~lr~~~~ 526 (534)
T COG0318 509 PRTASGKIDRRALREEYR 526 (534)
T ss_pred CCCCchhhhHHHHHHHHH
Confidence 999999999999987654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=296.70 Aligned_cols=320 Identities=20% Similarity=0.345 Sum_probs=255.2
Q ss_pred ccccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce---------eeceEE
Q 003331 459 RGFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---------ECSAAV 524 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~---------~~~~~~ 524 (829)
...++++|+.+++..+. ++|++ .+++||+++.++.|+++|..||+++|+++..... ..+..+
T Consensus 41 ~~~~~~~W~~~~g~g~~~~~~~~sPvv----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 116 (394)
T PRK11138 41 QFTPTTVWSTSVGDGVGDYYSRLHPAV----AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGV 116 (394)
T ss_pred cCCcceeeEEEcCCCCccceeeeccEE----ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccccccccccccc
Confidence 34678899999987763 47888 6889999999999999999999999998775410 111112
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc---
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--- 601 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--- 601 (829)
..+++.||+++.++.|+++|++||+++|+++..+.+.++|++.+ +.+|+++.++.|+++|+++|+.+|++.....
T Consensus 117 ~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 117 TVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 23456899999999999999999999999998888888888874 7899999999999999999999999976532
Q ss_pred --ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc-----------eeeeeeeecCCEEEEEeeCCeE
Q 003331 602 --IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-----------FASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 602 --~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-----------~~s~~~~~~~~~l~~~~~~g~i 668 (829)
..++|++.. +.+++++.+|.++++|.++ |+.+|+.....+. ..++.+ .++.+|+++.+|.+
T Consensus 195 ~~~~~sP~v~~--~~v~~~~~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy~~~~~g~l 268 (394)
T PRK11138 195 LRGESAPATAF--GGAIVGGDNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVYALAYNGNL 268 (394)
T ss_pred ccCCCCCEEEC--CEEEEEcCCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcEE--ECCEEEEEEcCCeE
Confidence 235777765 7899999999999999988 9999987653321 123333 47899999999999
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec-CCcccccccccccccccccc
Q 003331 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~ 746 (829)
+++| .+|+++|+.+.+.. ..+ ...++.||+++.+|.++++|.++|+.+|+.+. ......+|.+
T Consensus 269 ~ald~~tG~~~W~~~~~~~--~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---------- 333 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSV--NDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---------- 333 (394)
T ss_pred EEEECCCCCEEEeecCCCc--cCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE----------
Confidence 9999 99999999875432 122 23478999999999999999999999998653 2222233322
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEeeeCCeEEEEec
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~vg~~~g~l~~~d~ 821 (829)
.++.+|+++.+|.|+++|.++| +.+|+.++. +.+.++|++.+++||+++.+|.||++++
T Consensus 334 ---~~g~l~v~~~~G~l~~ld~~tG-------------~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 ---YNGYLVVGDSEGYLHWINREDG-------------RFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCC-------------CEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 3789999999999999999877 666776664 4577899999999999999999999975
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=327.50 Aligned_cols=242 Identities=22% Similarity=0.358 Sum_probs=200.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCc--------------ccccCCCCcc
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS--------------ILEMSTLKSV 80 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 80 (829)
..+++||.+++|||++++.+.+.+.+.++++.+++.||+||++..++......... ..........
T Consensus 285 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (563)
T PLN02860 285 KVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGV 364 (563)
T ss_pred ccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCc
Confidence 45789999999999999999999999998899999999999986554332211000 0000011234
Q ss_pred ccccccCCcEEEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 81 PIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 81 ~~G~p~~~~~~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
++|+|++++++++++++ +++.|||+++|++++.||+++|+.+.+.|. .++||+|||+|+++++
T Consensus 365 ~vG~p~~~~~v~i~~~~--~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDl~~~d~d 427 (563)
T PLN02860 365 CVGKPAPHVELKIGLDE--SSRVGRILTRGPHVMLGYWGQNSETASVLS---------------NDGWLDTGDIGWIDKA 427 (563)
T ss_pred ccCCccCCcEEEEecCC--CCceeEEEEecCcccccccCCccccchhcc---------------CCCeEEccceEEEcCC
Confidence 78999999999999765 677899999999999999999998887763 3689999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------chHHHH
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------SSEIFL 229 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~ 229 (829)
|.++|+||.||+||++|++|+|.|||+++.+||.|.+++|++.++...++.++++++++++.. ......
T Consensus 428 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 507 (563)
T PLN02860 428 GNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSS 507 (563)
T ss_pred CCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccH
Confidence 999999999999999999999999999999999999999999998877788999999875421 011234
Q ss_pred HHHHHHHHh-cCCCCCcCCeEEEe-CcccCCCCCCcchhhhccccc
Q 003331 230 SSIKSWVSS-KLPLAMIPNRFVFM-DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 230 ~~l~~~l~~-~l~~~~~p~~~~~~-~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.|++++++ .|+.|++|..++++ ++||+|++|||+|++|++++.
T Consensus 508 ~~l~~~~~~~~L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~ 553 (563)
T PLN02860 508 ETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVL 553 (563)
T ss_pred HHHHHHHhhCcccccccceEEEEEecCCCCCcccchhHHHHHHHHH
Confidence 678888887 59999999999875 679999999999999987654
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=328.37 Aligned_cols=242 Identities=23% Similarity=0.292 Sum_probs=200.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++++.+.+ +..+++.||+||++..++...... ........++|+|+++++++|+
T Consensus 351 ~~l~~lr~~~~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~-----~~~~~~~gs~G~p~~g~~v~i~ 424 (628)
T TIGR02316 351 HDLSSLHWLFLAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGL-----DLKPVKLGSPGLPMYGYHLRVL 424 (628)
T ss_pred CCccceeEEEEecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCC-----CcCCCCCCCcccCcCCceEEEE
Confidence 4688999999999999999999998887 678999999999985443221110 0011244678999999999999
Q ss_pred cC-CC---CCCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+ ++ +.++.|||+++|| +++.||+++++.+.+.|... ..++||+|||+|++++||+++|+|
T Consensus 425 d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~------------~~~~~~~TGD~g~~d~dG~l~i~G 492 (628)
T TIGR02316 425 DEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSH------------FKRPLYSSFDWGIRDEDGYTFILG 492 (628)
T ss_pred ECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhc------------CCCCEEECCceEEEcCCCcEEEEE
Confidence 87 34 3467799999998 57889999876554443221 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----chHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----SSEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++++.... ..+...++|+++++++|+.
T Consensus 493 R~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~L~~ 572 (628)
T TIGR02316 493 RTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGA 572 (628)
T ss_pred cCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999888889999999875432 1234567899999999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
|++|..++++++||+|++||++|+.|++.+..
T Consensus 573 ~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~ 604 (628)
T TIGR02316 573 VARPARVYFVAALPKTRSGKLLRRSIQALAEG 604 (628)
T ss_pred CcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence 99999999999999999999999999987653
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=325.32 Aligned_cols=241 Identities=19% Similarity=0.257 Sum_probs=201.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhC-CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLF-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++++++.+.+ +++.+++.||+||++..+... ... ......++|.|+++++++|
T Consensus 380 ~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~-------~~~~~g~~g~p~~g~~~~i 451 (655)
T PRK03584 380 HDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG-NPL-------LPVYRGEIQCRGLGMAVEA 451 (655)
T ss_pred CChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC-CCC-------CCcCCCccCCCcCCceeEE
Confidence 4678999999999999999999999987 468899999999986432211 100 0123457899999999999
Q ss_pred ecCCCC--CCCCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~~--~~~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|+++. .++.|||+|+|+ +++.||+++++.+. |...... ...+||+|||+|++++||.++|+||.
T Consensus 452 vd~~g~~~~g~~GeL~v~gp~p~~~~gy~~~~~~~~--~~~~~~~---------~~~g~~~TGDl~~~d~dG~l~i~GR~ 520 (655)
T PRK03584 452 WDEDGRPVVGEVGELVCTKPFPSMPLGFWNDPDGSR--YRDAYFD---------TFPGVWRHGDWIEITEHGGVVIYGRS 520 (655)
T ss_pred ECCCCCCCCCCceEEEEccCCCCCcceeeCCCccch--HHHhhhc---------cCCCEeecCCeEEECCCCeEEEEeec
Confidence 998764 367799999996 79999999987542 2111100 12468999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|+++.+....+.+.++|++++++.|+.+++|..+
T Consensus 521 dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i 600 (655)
T PRK03584 521 DATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPRHVPDKI 600 (655)
T ss_pred cCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCCcCCCEE
Confidence 99999999999999999999999999999999999987888999999998765555556678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++++||+|++|||+|++|++.+..
T Consensus 601 ~~v~~lP~t~sGKi~r~~lr~~~~~ 625 (655)
T PRK03584 601 IAVPDIPRTLSGKKVELPVKKLLHG 625 (655)
T ss_pred EECCCCCCCCCccchHHHHHHHHcC
Confidence 9999999999999999999987653
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.24 Aligned_cols=226 Identities=27% Similarity=0.347 Sum_probs=194.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++++.+.+ +..++|.||+||++..+.... .. ......++|+|+++++++++
T Consensus 320 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG~TE~~~~~~~~~-~~-------~~~~~~~vG~~~~~~~~~i~ 390 (549)
T PRK07788 320 YDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYGSTEVAFATIATP-ED-------LAEAPGTVGRPPKGVTVKIL 390 (549)
T ss_pred CCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccCcchhchhhccCh-hh-------hhhcCCCcccCCCCcEEEEE
Confidence 3578999999999999999999999988 578999999999875443211 10 01234679999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+++|+.++.||++++.. . + .++||+|||+++++++|.++|+||.||
T Consensus 391 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~--~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR~dd 451 (549)
T PRK07788 391 DENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK--Q-I----------------IDGLLSSGDVGYFDEDGLLFVDGRDDD 451 (549)
T ss_pred CCCcCCCCCCCeEEEEEeCCCccccccCCCcc--c-c----------------cCCceecCceEEEcCCCCEEEeccCcc
Confidence 8776 3466799999999999999998754 1 1 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.++|.|.+++|++.+++..++.++++++++.+.... .++++++++++||.|++|..+++
T Consensus 452 ~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~ 528 (549)
T PRK07788 452 MIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALD---EDAIKDYVRDNLARYKVPRDVVF 528 (549)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCC---HHHHHHHHHHhhhcCCCCcEEEE
Confidence 999999999999999999999999999999998887788899999987643322 36899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|+++
T Consensus 529 v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 529 LDELPRNPTGKVLKRELREM 548 (549)
T ss_pred eCCCCCCCCcCEeHHHhhcc
Confidence 99999999999999999753
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=318.47 Aligned_cols=226 Identities=27% Similarity=0.413 Sum_probs=185.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.++++.+++.||+||++.+++...... .....++|+|+++++++++
T Consensus 296 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~vG~p~~g~~v~i~ 367 (539)
T PRK06334 296 SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNS--------PKHESCVGMPIRGMDVLIV 367 (539)
T ss_pred cccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCC--------CCCCCcCceecCCCEEEEE
Confidence 45789999999999999999999999998899999999999987665432111 1134578999999999999
Q ss_pred cCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++. ++++.|||+|+|++++.||+++|+.+. |... ++++||+|||+|+++++|.++|+||.|
T Consensus 368 d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~--~~~~------------~~~~w~~TGD~g~~d~~G~l~~~GR~~ 433 (539)
T PRK06334 368 SEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQG--FVEL------------GGETWYVTGDLGYVDRHGELFLKGRLS 433 (539)
T ss_pred cCCCCccCCCCceEEEEEecCcccccccCCccccc--ceee------------CCceeEECCCEEEECCCCeEEEEeccC
Confidence 8643 456789999999999999999987543 3211 146899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeE------EEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCC
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVD------TAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLA 243 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~------~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~ 243 (829)
|+||++|++|+|.|||++|.+||+|.+ ++|++.+++. ..++++++... . .+++++++++. ++.|
T Consensus 434 d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~---~----~~~~~~~l~~~~~~~~ 504 (539)
T PRK06334 434 RFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFPT---S----ISEVNDILKNSKTSSI 504 (539)
T ss_pred CeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEeccC---C----hHHHHHHHHhcCCccc
Confidence 999999999999999999999999987 6677666432 34555554321 1 24678888886 7899
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccc
Q 003331 244 MIPNRFVFMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~ 271 (829)
++|..++++++||+|++|||+|++|++.
T Consensus 505 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 532 (539)
T PRK06334 505 LKISYHHQVESIPMLGTGKPDYCSLNAL 532 (539)
T ss_pred ccchheeeecccccccCCcccHHHHHHH
Confidence 9999999999999999999999999865
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=311.94 Aligned_cols=242 Identities=19% Similarity=0.196 Sum_probs=187.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++.+++.+.++ ++.+++.||+||++..++... .. ......++|+|.++++++|
T Consensus 233 ~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~-------~~~~~~~~G~p~~~~~~~i 304 (499)
T PLN03051 233 LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST-LL-------QPQAPGAFSTASLGTRFVL 304 (499)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc-cc-------CCCCCccccCCCCCceEEE
Confidence 35789999999999999999887776331 378999999999875333211 10 0113457999999999999
Q ss_pred ecCCCC---CC--CCCeEEEccccc--cccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 94 VESDTV---KP--DEGEIYAGGLCL--SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 94 ~d~~~~---~~--~~Gel~i~g~~~--~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|+++. .+ ..|||+++|+.+ +.||++++. +. .|.. ..+. ....+.+||+|||+|++|+||+|+|+
T Consensus 305 vd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~-~~~~--g~~~----~~~~~~~~~~TGDlg~~d~dG~l~~~ 376 (499)
T PLN03051 305 LNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DK-VYYK--GMPM----YGSKGMPLRRHGDIMKRTPGGYFCVQ 376 (499)
T ss_pred ECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cc-eeee--cCCc----cccCCcceeecCCeEEECCCCcEEEE
Confidence 997763 23 369999999976 579998653 32 3321 1000 00123569999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhC-CCCeeEEEEEEeecCCce-EEEEEEE---EecCCC--CchHHHHHHHHHHHHhc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGEL-VILVAFI---VLKEKK--TSSEIFLSSIKSWVSSK 239 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~-~~~~~~v---~~~~~~--~~~~~~~~~l~~~l~~~ 239 (829)
||.||+||++|+||+|.|||++|.+ ||.|.+|+|++.+++..+ +.+++++ +++.+. ...+++.+.++++++++
T Consensus 377 gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~ 456 (499)
T PLN03051 377 GRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTN 456 (499)
T ss_pred eccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999999996 999999999999887777 6788888 666543 23345566777778888
Q ss_pred CCCCCcCCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|+.++.|..++++++||+|++|||+|++|++.+
T Consensus 457 l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~ 489 (499)
T PLN03051 457 LNPLFKVSRVKIVPELPRNASNKLLRRVLRDQL 489 (499)
T ss_pred cCCccCCceEEEcCCCCCCCCccHHHHHHHHHH
Confidence 998777778999999999999999999998644
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.74 Aligned_cols=241 Identities=26% Similarity=0.362 Sum_probs=211.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
+..++||++.++|||+.++.++++.+.+...+|++.||+||++.+++....... ..++...+.|.+++.+.|+
T Consensus 356 ~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~-------p~~pg~~~~p~~g~~v~i~ 428 (626)
T KOG1175|consen 356 YSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKL-------PIKPGSAGKPFPGYDVQIL 428 (626)
T ss_pred cccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCC-------CcCccccCCCCCCcceEEE
Confidence 444789999999999999999999999843469999999999988875332221 2367789999999999999
Q ss_pred cCCCC--CC--CCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ESDTV--KP--DEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~~~~--~~--~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+++. ++ +.|||++..+ +.+++||++++ +|....+. ...++|+|||.+++|+||+++++|
T Consensus 429 de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~e----rf~~~yf~---------k~pg~y~tGD~~~rd~dGY~~i~G 495 (626)
T KOG1175|consen 429 DENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHE----RFRAAYFK---------KFPGYYFTGDGGRRDEDGYYWILG 495 (626)
T ss_pred CCCCCCcCCCCceeEEEEeCCCCccccccccCCHH----Hhhhhhcc---------cCCceEEecCceEEcCCceEEEEe
Confidence 98763 22 6799999874 78999999987 34332221 246899999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+|+++|+|+.+.|||+++.+||.|.|++|++.+++..++.+++|++++++....+.+.++|+++++..+.++..|+
T Consensus 496 R~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~ 575 (626)
T KOG1175|consen 496 RVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPR 575 (626)
T ss_pred cccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
.+++++.||+|.+||+.|+.|++....+
T Consensus 576 ~I~~v~~LPkTrSGKimRr~lrki~~g~ 603 (626)
T KOG1175|consen 576 LIVFVPGLPKTRSGKIMRRALRKIASGK 603 (626)
T ss_pred eeEecCCCCccccchhHHHHHHHHhccC
Confidence 9999999999999999999999887655
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=320.54 Aligned_cols=238 Identities=17% Similarity=0.254 Sum_probs=199.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
.++++||.+++|||++++++++++.+.++ +..+.+.||+||++....... .. .......+|.|.+++++++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~-~~-------~~~~~g~~g~p~~g~~v~i 452 (652)
T TIGR01217 381 HDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGAN-PT-------LPVHIGEIQAPGLGTAVQS 452 (652)
T ss_pred CChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCC-CC-------CCCcCCccCCCcCCCceEE
Confidence 46899999999999999999999988874 356889999999743222111 00 0113356889999999999
Q ss_pred ecCCCC--CCCCCeEEEccc--cccccccCCCCCCc--ccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 94 VESDTV--KPDEGEIYAGGL--CLSNGYFSESTFMP--SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 94 ~d~~~~--~~~~Gel~i~g~--~~~~gy~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
+|+++. +++.|||+++|+ +++.|||++++.+. +.+.. ...+||+|||+|++++||+++|+|
T Consensus 453 vd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~-------------~~~g~~~tGDlg~~d~dG~l~i~G 519 (652)
T TIGR01217 453 WDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFD-------------TYPGVWRHGDWITLTPRGGIVIHG 519 (652)
T ss_pred ECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhc-------------CCCCEEEcCCcEEECCCCcEEEEe
Confidence 998774 367899999996 68999999998553 11111 124689999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++||+++++....+.+.++|++++++.|+.+++|.
T Consensus 520 R~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~ 599 (652)
T TIGR01217 520 RSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPD 599 (652)
T ss_pred cccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCCcCCC
Confidence 99999999999999999999999999999999999999888899999999987655555667889999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.++++++||+|++|||+|+.|++.+.
T Consensus 600 ~i~~v~~lP~T~sGKi~r~~Lr~~~~ 625 (652)
T TIGR01217 600 EIIEVPGIPHTLTGKRVEVAVKRVLQ 625 (652)
T ss_pred EEEECCCCCCCCCccChHHHHHHHHc
Confidence 99999999999999999999998764
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=320.77 Aligned_cols=233 Identities=25% Similarity=0.314 Sum_probs=203.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+ +.++++.||+||++..++..... ......++|+|+++++++++
T Consensus 320 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~g~~~~i~ 390 (570)
T PRK04319 320 YDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPIHDNWWMTETGGIMIANYPA--------MDIKPGSMGKPLPGIEAAIV 390 (570)
T ss_pred CCcccceEEEEcccCCCHHHHHHHHHHh-CCCeEeceeecccCCEEEecCCC--------CCCCCCcCcCCCCCCEEEEE
Confidence 4578999999999999999999999887 68899999999998654422111 11245679999999999999
Q ss_pred cCCC---CCCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDT---VKPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ ++++.|||+++| ++++.||+++++.+.+.|. ++||+|||+++++++|+++++||.
T Consensus 391 d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~----------------~gw~~TGDl~~~~~~g~l~~~GR~ 454 (570)
T PRK04319 391 DDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA----------------GDWYVSGDSAYMDEDGYFWFQGRV 454 (570)
T ss_pred CCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc----------------CCceEeCcEEEECCCeeEEEEecC
Confidence 8766 356779999987 8999999999998887762 469999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++....+.+.++|+++++++|+.|++|..+
T Consensus 455 ~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 534 (570)
T PRK04319 455 DDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREI 534 (570)
T ss_pred CCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEE
Confidence 99999999999999999999999999999999998887788999999988765545556678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++++||+|++||++|++|+++.
T Consensus 535 ~~v~~iP~t~~GKv~r~~L~~~~ 557 (570)
T PRK04319 535 EFKDKLPKTRSGKIMRRVLKAWE 557 (570)
T ss_pred EEeCCCCCCCchhhhHHHHHHHH
Confidence 99999999999999999998764
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=320.08 Aligned_cols=230 Identities=21% Similarity=0.328 Sum_probs=195.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++.+++.+.+ +++++|.||+||++++++..... ......++|.|++++.++++
T Consensus 330 ~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~~--------~~~~~~svG~~~p~~~v~i~ 400 (632)
T PRK07529 330 HDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVNPPD--------GERRIGSVGLRLPYQRVRVV 400 (632)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccCCcc--------ccccCCCcccccCCceEEEE
Confidence 4678999999999999999999999987 78999999999998766532211 11245689999999998885
Q ss_pred --cCCC------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 95 --ESDT------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 95 --d~~~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
|+++ ++++.|||+|+|++++.||++++. +...|. .++||+|||+|+++++|.+++.
T Consensus 401 ~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~-~~~~~~---------------~~gw~~TGDlg~~d~dG~l~i~ 464 (632)
T PRK07529 401 ILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAH-NKGLWL---------------EDGWLNTGDLGRIDADGYFWLT 464 (632)
T ss_pred EcCCCCcccccCCCCCceEEEEECCCccccccCCcc-cccccc---------------CCCceEcCcEEEEcCCceEEEE
Confidence 4433 346789999999999999998654 444442 3689999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCC-CCCc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP-LAMI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~ 245 (829)
||.||+||++|+||+|.+||++|.+||.|.+|+|++.++...++.++++|++.+.....+ ++++++++++++ .+++
T Consensus 465 GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~---~~l~~~~~~~l~~~~~~ 541 (632)
T PRK07529 465 GRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATE---AELLAFARDHIAERAAV 541 (632)
T ss_pred ecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCH---HHHHHHHHHhcchhccC
Confidence 999999999999999999999999999999999999988877888999999886543332 578888989987 4799
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|..++++++||+|++|||+|++|++.+
T Consensus 542 P~~i~~v~~lP~t~~GKi~r~~Lr~~~ 568 (632)
T PRK07529 542 PKHVRILDALPKTAVGKIFKPALRRDA 568 (632)
T ss_pred CcEEEEecCCCCCCCCcccHHHHHHHH
Confidence 999999999999999999999998654
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=318.57 Aligned_cols=234 Identities=24% Similarity=0.316 Sum_probs=200.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++++++.+.++++.+++.||+||+++.++...... ......++|+|+++++++|+
T Consensus 316 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~~~~~~~v~i~ 388 (560)
T PLN02574 316 EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE-------KLSKYSSVGLLAPNMQAKVV 388 (560)
T ss_pred CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCcc-------ccCCCCceeeeCCCcEEEEE
Confidence 45789999999999999999999999998899999999999986543211110 01235689999999999999
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+ ++ +.++.|||+|+|++++.||+++++.+.+.|. .++||+|||+|+++++|.++++||.|
T Consensus 389 d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~ 453 (560)
T PLN02574 389 DWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTID---------------KDGWLRTGDIAYFDEDGYLYIVDRLK 453 (560)
T ss_pred eCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhcc---------------CCCCcccceEEEEECCCeEEEEecch
Confidence 84 33 3567899999999999999999999887773 36799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.|||++|.+||.|.+++|++.+++..++.++++++........ .++++++++++|+.++.|..++
T Consensus 454 d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~v~ 530 (560)
T PLN02574 454 EIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLS---QEAVINYVAKQVAPYKKVRKVV 530 (560)
T ss_pred hheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCC---HHHHHHHHHHhccCcccCcEEE
Confidence 9999999999999999999999999999999988877777888888876543322 3578999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++|||+|++|++.+.
T Consensus 531 ~v~~iP~t~~GKi~r~~L~~~~~ 553 (560)
T PLN02574 531 FVQSIPKSPAGKILRRELKRSLT 553 (560)
T ss_pred EeeccCCCCcchhhHHHHHHHHh
Confidence 99999999999999999987653
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=319.78 Aligned_cols=242 Identities=26% Similarity=0.326 Sum_probs=199.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+ ++++++.||+||++..+...... . ........++|+|+++++++++
T Consensus 352 ~~l~~lr~i~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~-~----~~~~~~~~~~G~p~~g~~~~i~ 425 (629)
T PRK10524 352 HDLSSLRALFLAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARG-V----EDRPTRLGSPGVPMYGYNVKLL 425 (629)
T ss_pred cChhheeEEEEeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCC-c----ccCcCCCCCcccCcCCceEEEE
Confidence 4578999999999999999999999888 68899999999998433221111 0 0011245678999999999999
Q ss_pred cC-CC---CCCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ES-DT---VKPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+ ++ +.+..|||+++|| +++.||+++++.+.+.|... ..++||+|||+++++++|.++|+|
T Consensus 426 d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~TGDl~~~d~dG~l~i~G 493 (629)
T PRK10524 426 NEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSL------------FGRQVYSTFDWGIRDADGYYFILG 493 (629)
T ss_pred eCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhcc------------CCCcEEEcCCcEEEcCCCcEEEEE
Confidence 87 55 3466799999998 57889999876554433221 135799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-----hHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-----SEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|.+||.|.+++|++.++...++.++++++++..... .+.+.++|++++++.|+.
T Consensus 494 R~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~ 573 (629)
T PRK10524 494 RTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGA 573 (629)
T ss_pred EecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999988778889999998764321 234567899999999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++|..++++++||+|++||++|++|++....
T Consensus 574 ~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 605 (629)
T PRK10524 574 VARPARVWFVSALPKTRSGKLLRRAIQAIAEG 605 (629)
T ss_pred CcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence 99999999999999999999999999987543
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=305.19 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=187.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+. ++++++.||+||++..++...... ......++|+|+++++++++
T Consensus 227 ~~l~~l~~i~~gG~~l~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~p~~~v~i~ 297 (452)
T PRK07445 227 QWLAQFRTILLGGAPAWPSLLEQARQL--QLRLAPTYGMTETASQIATLKPDD-------FLAGNNSSGQVLPHAQITIP 297 (452)
T ss_pred hhhhcceEEEECCccCCHHHHHHHHhc--CCeEecCcchhhhcccccccCchh-------hccCCCcCCccCCCCeEEEc
Confidence 457899999999999999999988763 789999999999875543321110 01134578999999999987
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
.+..|||+|+|+.++.||++++.. .++||+|||++++++||+++|.||.||+||
T Consensus 298 -----~g~~Gel~v~g~~~~~gY~~~~~~---------------------~~g~~~TGDl~~~d~dG~l~~~GR~dd~I~ 351 (452)
T PRK07445 298 -----ANQTGNITIQAQSLALGYYPQILD---------------------SQGIFETDDLGYLDAQGYLHILGRNSQKII 351 (452)
T ss_pred -----CCCcceEEEeCCccchhhcCCccC---------------------CCCEEECCCEEEEcCCCCEEEEeecCCEEE
Confidence 356799999999999999974320 357999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++..... ..++++++++++|+.+++|..++++++
T Consensus 352 ~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~L~~~~~P~~i~~v~~ 427 (452)
T PRK07445 352 TGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSI----SLEELKTAIKDQLSPFKQPKHWIPVPQ 427 (452)
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCC----CHHHHHHHHHHhCCcccCCeEEEEecC
Confidence 9999999999999999999999999999988877788899988765432 236789999999999999999999999
Q ss_pred ccCCCCCCcchhhhcccccc
Q 003331 255 LPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~ 274 (829)
||+|++||++|++|++++..
T Consensus 428 lP~t~~GKi~r~~L~~~~~~ 447 (452)
T PRK07445 428 LPRNPQGKINRQQLQQIAVQ 447 (452)
T ss_pred CCCCCCcccCHHHHHHHHHH
Confidence 99999999999999876644
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=275.44 Aligned_cols=233 Identities=27% Similarity=0.436 Sum_probs=201.9
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDI 91 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~ 91 (829)
...+++|||++-+||..+++++.+++...+ ++.+-+.+||.|.-+. +.+..+.+. .-...-|+|+ |.-++
T Consensus 300 ~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~LQQVFGMAEGLvn--yTRLDDp~E------~i~~TQGrPlsP~DEv 370 (542)
T COG1021 300 ERADLSSLRLLQVGGARLSATLARRVPAVL-GCQLQQVFGMAEGLVN--YTRLDDPPE------IIIHTQGRPLSPDDEV 370 (542)
T ss_pred ccCCchheeEEeecCcccCHHHHhhchhhh-CchHHHHhhhhhhhhc--ccccCCchH------heeecCCCcCCCccee
Confidence 457799999999999999999999999998 8999999999995432 222222222 2334568887 56779
Q ss_pred EEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 92 VLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 92 ~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+|.++. +|++|+|..+||.-.+||++.|+-++..|.. +|||+|||+++++++|+|.+.||
T Consensus 371 rvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a---------------~GFYrsGD~V~~~~dGyl~V~GR 435 (542)
T COG1021 371 RVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDA---------------DGFYRSGDLVRRDPDGYLVVEGR 435 (542)
T ss_pred EEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCc---------------CCceecCceeEecCCceEEEEee
Confidence 99998874 6788999999999999999999999999854 78999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCC
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPN 247 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~ 247 (829)
.+|||+..|++|..+|||+.|..||.|.+|++++.+++-.+++.+||+++++..... .+++++|.+. +..|.+|+
T Consensus 436 ~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~----~qlr~~L~~~GlAa~K~PD 511 (542)
T COG1021 436 VKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRA----AQLRRFLRERGLAAFKLPD 511 (542)
T ss_pred ehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCH----HHHHHHHHHcchhhhcCCc
Confidence 999999999999999999999999999999999999999999999999998765433 4677777655 88999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++.+++.||+|+-||||+++|++...
T Consensus 512 rie~v~~~P~T~VGKIdKk~Lr~~l~ 537 (542)
T COG1021 512 RIEFVDSLPLTAVGKIDKKALRRRLA 537 (542)
T ss_pred ceeecccCCCcccccccHHHHHHHhh
Confidence 99999999999999999999986543
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=315.26 Aligned_cols=229 Identities=23% Similarity=0.306 Sum_probs=198.7
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.+.+.+ ++++++.||+||++.+++..... .....++|.|++++.++++|
T Consensus 324 ~~~~lr~v~~gG~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~---------~~~~~~vG~~~~~~~v~i~d 393 (562)
T PRK05677 324 DFSALKLTLSGGMALQLATAERWKEVT-GCAICEGYGMTETSPVVSVNPSQ---------AIQVGTIGIPVPSTLCKVID 393 (562)
T ss_pred ChhhceEEEEcCccCCHHHHHHHHHHc-CCCeeccCCccccCcceeecCcc---------CCCCCccCccCCCCEEEEEC
Confidence 467999999999999999999999887 78999999999988665432111 12345799999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.+..|||+++|+.+++||+++|+.+.+.|. .++||+|||+++++++|.+++.||.||+
T Consensus 394 ~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGDlg~~~~~G~l~i~GR~~d~ 458 (562)
T PRK05677 394 DDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILD---------------SDGWLKTGDIALIQEDGYMRIVDRKKDM 458 (562)
T ss_pred CCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccC---------------CCCcccccceEEECCCCcEEEEecCcCe
Confidence 766 3566799999999999999999999888774 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++...... ..+++++++++.|+.|++|..++++
T Consensus 459 i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~~i~~v 535 (562)
T PRK05677 459 ILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETL---TKEQVMEHMRANLTGYKVPKAVEFR 535 (562)
T ss_pred EEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCC---CHHHHHHHHHHhhhhccCCcEEEEe
Confidence 9999999999999999999999999999999887777788888887654322 2357899999999999999999999
Q ss_pred CcccCCCCCCcchhhhcccc
Q 003331 253 DSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~ 272 (829)
++||+|++||++|++|++..
T Consensus 536 ~~iP~t~sGKi~r~~L~~~~ 555 (562)
T PRK05677 536 DELPTTNVGKILRRELRDEE 555 (562)
T ss_pred ccCCCCCcccccHHHHHHHH
Confidence 99999999999999997643
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-30 Score=285.34 Aligned_cols=327 Identities=18% Similarity=0.307 Sum_probs=243.8
Q ss_pred ccccccccccccc--ccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-e------eeceEEeeCCc
Q 003331 459 RGFIQELWKVHME--SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-I------ECSAAVLADFS 529 (829)
Q Consensus 459 ~~~~~~~W~~~~~--~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~------~~~~~~~~~~~ 529 (829)
...+++.|+++++ ..+.++|++ .+++||+++.++.|+++|+.||+++|+++.... . ........+++
T Consensus 36 ~~~~~~~W~~~~~~~~~~~~sPvv----~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 36 VKKLKVAWTFSTGDERGQEGTPLV----VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred hhcceeeEEEECCCCCCcccCCEE----ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 3467889999998 678999998 588999999999999999999999999876543 1 11111111226
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCe------eeeeeeeecCCCEEEEecc---------CCeEEEEEcCCCeEEE
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------VKCQPVVDAPRQLIWCGSH---------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------~~~~~~~~~~~~~i~~gs~---------~g~l~~~d~~tg~~~w 594 (829)
.||+++.++.|+++|++||+++|+++.... +.++|++.+ +.+|+++. ++.++++|.+||+.+|
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 899999999999999999999999988765 567777765 78888763 5789999999999999
Q ss_pred eeccC---------------------CcccccceeecCCCEEEEEecCC------------------eEEEEEccCCCce
Q 003331 595 KLPCG---------------------GSIFGSPAIDEVHDVLYVASTSG------------------RLTAISVKALPFH 635 (829)
Q Consensus 595 ~~~~~---------------------~~~~~~~~~~~~~~~l~v~t~~g------------------~l~~~~~~~~~g~ 635 (829)
+++.. ..++++|.++..++.||+++.++ .|+++|+++ |+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t--G~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT--GK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC--CC
Confidence 98663 12445677776679999998765 799999998 99
Q ss_pred EEEeeccCCcc------eeeeeee----ecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 636 TLWLHELEVPA------FASLCIT----SANR---HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 636 ~~w~~~~~~~~------~~s~~~~----~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
.+|+++...+. ...+.+. .+++ .+++++.+|.++++| .+|+++|+.+....... . ..+.+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~-----~-~~~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMA-----Y-DPGLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccc-----c-CCceE
Confidence 99998754321 1122221 1222 588899999999999 99999999875411111 1 12567
Q ss_pred EEEe------------------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 702 LICS------------------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 702 ~~~t------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
|+++ .+|.|+++|..+|+.+|+.+.......-..-.. .....+...++.+|+++.+|.|
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~---~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP---HWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc---ccCcceEecCCeEEEECCCCeE
Confidence 7753 468899999999999999886621100000000 0001122347899999999999
Q ss_pred EEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCe
Q 003331 764 HILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 764 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~ 815 (829)
+++|.++| +.+|++++++.+..+|+. .++++|+++.+|+
T Consensus 419 ~ald~~tG-------------~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~ 459 (488)
T cd00216 419 RAFDATTG-------------KELWKFRTPSGIQATPMTYEVNGKQYVGVMVGG 459 (488)
T ss_pred EEEECCCC-------------ceeeEEECCCCceEcCEEEEeCCEEEEEEEecC
Confidence 99999987 778888999999999984 5999999998774
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=310.66 Aligned_cols=236 Identities=22% Similarity=0.252 Sum_probs=178.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCC---cc---cccCCCCcccc
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLP---SI---LEMSTLKSVPI 82 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~---~~---~~~~~~~~~~~ 82 (829)
...+++||.+++|||++++++.++|.+.+ +..+++|.||+||+++.++........ .. .........++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 347 (525)
T PRK05851 268 DVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVL 347 (525)
T ss_pred CCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeee
Confidence 34578999999999999999999988752 234699999999998665532211000 00 00011234679
Q ss_pred ccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEc
Q 003331 83 GLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158 (829)
Q Consensus 83 G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~ 158 (829)
|+|+++++++|+|+++ +.++.|||+++|++++.||+++|+.+ .++||+|||+++++
T Consensus 348 G~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~~~~~--------------------~~~~~~TGDl~~~~ 407 (525)
T PRK05851 348 GNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQAPID--------------------PDDWFPTGDLGYLV 407 (525)
T ss_pred cCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccCCccC--------------------CCCceeccceEEEE
Confidence 9999999999998765 24567999999999999999987532 24699999999986
Q ss_pred cCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh
Q 003331 159 QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238 (829)
Q Consensus 159 ~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~ 238 (829)
+|.|+|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++...++++........+.+.+.+++++..
T Consensus 408 -~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~ 486 (525)
T PRK05851 408 -DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVAS 486 (525)
T ss_pred -CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999998877655555555554432212223333444444444
Q ss_pred cCCCCCcCCeEEEeC--cccCCCCCCcchhhhcccc
Q 003331 239 KLPLAMIPNRFVFMD--SLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~ 272 (829)
.+ +++|..+++++ +||+|++|||+|++|++.+
T Consensus 487 ~l--~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~ 520 (525)
T PRK05851 487 EC--GVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSL 520 (525)
T ss_pred Hh--CCCccEEEEECCCCcCcCcchHHHHHHHHHHH
Confidence 33 28999999998 8999999999999998754
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=307.57 Aligned_cols=224 Identities=25% Similarity=0.334 Sum_probs=190.7
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++++.|.+.+ +..++|.||+||++.+++..... ......++|+|+++++++++|
T Consensus 310 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~vG~p~~~~~~~i~d 380 (537)
T PRK13382 310 SGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEAGMIATATPAD--------LRAAPDTAGRPAEGTEIRILD 380 (537)
T ss_pred CccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEecccccccCcceecChhH--------hccCCCCccccCcCcEEEEEC
Confidence 456899999999999999999999988 56799999999998665432110 012456899999999999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|++++.||+ ++.+.. | .++||+|||+++++++|+++|+||+||+
T Consensus 381 ~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~----------------~~g~~~TGDl~~~~~~g~l~~~GR~dd~ 441 (537)
T PRK13382 381 QDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F----------------HDGFMASGDVGYLDENGRLFVVGRDDEM 441 (537)
T ss_pred CCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c----------------cCCCEeeCceEEEeCCCcEEEeccccce
Confidence 8763 4567999999999999997 443332 2 2479999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.+||..|.++|.|.+++|++.++...++.+++++++..... ...+++++++++.|+.+++|..++++
T Consensus 442 ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~P~~i~~v 518 (537)
T PRK13382 442 IVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGAS---ATPETLKQHVRDNLANYKVPRDIVVL 518 (537)
T ss_pred eEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCC---CCHHHHHHHHHHhccCCCCCcEEEEe
Confidence 999999999999999999999999999999988777778899998865432 23468999999999999999999999
Q ss_pred CcccCCCCCCcchhhhcc
Q 003331 253 DSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~ 270 (829)
+++|+|++||++|++|++
T Consensus 519 ~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 519 DELPRGATGKILRRELQA 536 (537)
T ss_pred ccCCCCCCCCCcHHhhCC
Confidence 999999999999999874
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=305.67 Aligned_cols=232 Identities=23% Similarity=0.328 Sum_probs=200.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++.+++.+.+.+++..+++.||+||++..++...... ......++|+|+++++++++
T Consensus 261 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 333 (497)
T PRK06145 261 FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGR-------EIEKIGSTGRALAHVEIRIA 333 (497)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCcc-------ccccCCCcccCCCCceEEEE
Confidence 35678999999999999999999999998899999999999987665432211 01134578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+.+.|. ++||+|||+++++++|+++++||.||
T Consensus 334 ~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~----------------~~~~~TGDl~~~~~~g~l~~~GR~~~ 397 (497)
T PRK06145 334 DGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFY----------------GDWFRSGDVGYLDEEGFLYLTDRKKD 397 (497)
T ss_pred CCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHh----------------CCCeeccceEEEcCCCcEEEeccccc
Confidence 8765 3456799999999999999999998888773 47999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.++|+|.+++|++.++...+..+++++++....... .+++++++++.|+.+++|..++.
T Consensus 398 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~ 474 (497)
T PRK06145 398 MIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLT---LEALDRHCRQRLASFKVPRQLKV 474 (497)
T ss_pred eEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCCEEEE
Confidence 999999999999999999999999999999988877677888888876543222 36889999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++..
T Consensus 475 v~~iP~t~~GKi~r~~l~~~~ 495 (497)
T PRK06145 475 RDELPRNPSGKVLKRVLRDEL 495 (497)
T ss_pred eccCCCCCcccccHHHHHHHh
Confidence 999999999999999998643
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=309.25 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=192.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcc-cccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSI-LEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++.+++.+.++ ++++++.||+||++.+++.......... .........++|+|+++++++
T Consensus 285 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 364 (552)
T PRK09274 285 IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVR 364 (552)
T ss_pred CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEE
Confidence 46889999999999999999999999986 4899999999999876543211100000 000111234789999999999
Q ss_pred EecCCC------------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 93 LVESDT------------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 93 i~d~~~------------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
|+|+.. +.++.|||+++|+.++.||+++|+.+...|..... +..||+|||+|+++++
T Consensus 365 ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~-----------g~~w~~TGDlg~~d~d 433 (552)
T PRK09274 365 IIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQ-----------GDVWHRMGDLGYLDAQ 433 (552)
T ss_pred EEeccccccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCC-----------CCcEEEcCCEEEEccC
Confidence 997421 34567999999999999999999988877643211 2259999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhc
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSK 239 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~ 239 (829)
|.|+++||.||+||++|++|+|.|||++|.+||.|.+|+|++.++.. +..++++|++.++... .+.+.+.+++.+..
T Consensus 434 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~- 511 (552)
T PRK09274 434 GRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVPG-AQRPVLCVELEPGVACSKSALYQELRALAAA- 511 (552)
T ss_pred CcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCCC-CceEEEEEEccCccccchHHHhhhhHHHHHh-
Confidence 99999999999999999999999999999999999999999987754 4567788887765432 22344556655543
Q ss_pred CCCCCcCCeEEEeCcccCC--CCCCcchhhhccccc
Q 003331 240 LPLAMIPNRFVFMDSLPMT--SSGKVDYASLSASTS 273 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t--~~GKi~r~~l~~~~~ 273 (829)
++.++.|..++++++||+| ++|||+|++|++.+.
T Consensus 512 ~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~ 547 (552)
T PRK09274 512 HPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAA 547 (552)
T ss_pred cCCCcceeEEeccCCCCccccccccccHHHHHHHHH
Confidence 3566788999999999999 799999999987543
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=304.45 Aligned_cols=232 Identities=21% Similarity=0.234 Sum_probs=197.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..++++|.++.||+++++++.+.+.+.+ +..+++.||+||++.++.... .. ......++|+|+++ .++++
T Consensus 267 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~g-~~~i~ 336 (501)
T PRK13390 267 YDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFIDS-PD-------WLAHPGSVGRSVLG-DLHIC 336 (501)
T ss_pred CChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEecc-hh-------hccCCCCcCCcccc-eEEEE
Confidence 3467999999999999999999998877 678999999999976443211 10 01134578999999 68999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ ++++.|||+|+|+.++.||+++|+.+.+.|.. ...+||+|||+++++++|.+++.||.|+
T Consensus 337 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~-------------~~~~w~~tGDl~~~~~dg~l~~~gR~~~ 403 (501)
T PRK13390 337 DDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHP-------------AHPFWTTVGDLGSVDEDGYLYLADRKSF 403 (501)
T ss_pred CCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhcc-------------CCCceEEcCceEEECCCCeEEEeecccc
Confidence 8766 35678999999999999999999988877642 1357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.+||.|.++++++.++...++.+++++++.......+...+++++++++.||.+++|..++.
T Consensus 404 ~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~ 483 (501)
T PRK13390 404 MIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEF 483 (501)
T ss_pred ceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999999999999999999999999999999887777788888887765433334457899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhc
Q 003331 252 MDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~ 269 (829)
+++||+|++||++|++|+
T Consensus 484 ~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 484 VDELPRTPTGKLVKGLLR 501 (501)
T ss_pred eccCCCCCccceehhhcC
Confidence 999999999999999884
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=304.27 Aligned_cols=231 Identities=23% Similarity=0.330 Sum_probs=196.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+ +++++|.||+||++.+++...... ......++|+|+++++++++
T Consensus 309 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~v~i~ 380 (547)
T PRK13295 309 RPVSSLRTFLCAGAPIPGALVERARAAL-GAKIVSAWGMTENGAVTLTKLDDP-------DERASTTDGCPLPGVEVRVV 380 (547)
T ss_pred CCcccceEEEEecCCCCHHHHHHHHHHh-CCCeEEeccCCCCCCeeeccCCCc-------chhccCccccccCCcEEEEE
Confidence 5678999999999999999999999988 789999999999986544321110 01134578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+|+|++++.||+++|+.+... .++||+|||+++++++|.+++.||.||
T Consensus 381 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~-----------------~~g~~~TGD~~~~~~~g~l~~~gR~~~ 443 (547)
T PRK13295 381 DADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD-----------------ADGWFDTGDLARIDADGYIRISGRSKD 443 (547)
T ss_pred CCCCCCCCCCCCCeEEEEcCcccccccCCccccccC-----------------CCCCeecceEEEEcCCceEEEEeccCC
Confidence 8776 34677999999999999999999877643 146999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~ 250 (829)
+||++|+||+|.+||++|.+++.|.+++|++.++...++.+++++++...... ..+++++++++ .++.+++|..++
T Consensus 444 ~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~~l~~~~~P~~i~ 520 (547)
T PRK13295 444 VIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL---DFEEMVEFLKAQKVAKQYIPERLV 520 (547)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCC---CHHHHHHHHHhccCccccCCcEEE
Confidence 99999999999999999999999999999999887777788999988754322 23578888876 799999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+++||+|++||++|++|++.+.
T Consensus 521 ~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 521 VRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred EeccCCCCCCccccHHHHHHHHh
Confidence 99999999999999999987553
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.3e-32 Score=305.36 Aligned_cols=236 Identities=24% Similarity=0.312 Sum_probs=199.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+.+++..+++.||+||++.+++....... ........++|+|+++++++++
T Consensus 295 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~ 370 (537)
T PLN02246 295 YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAK----EPFPVKSGSCGTVVRNAELKIV 370 (537)
T ss_pred cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCC----CCccccCCccccccCCcEEEEe
Confidence 346899999999999999999999999988999999999999865543211000 0011234578999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.|
T Consensus 371 d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~~g~l~~~GR~d 435 (537)
T PLN02246 371 DPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTID---------------KDGWLHTGDIGYIDDDDELFIVDRLK 435 (537)
T ss_pred cCCCCCcCCCCCceEEEEECCchhccccCCchhhhhccc---------------CCCCeeecceEEEeCCCeEEEEeccc
Confidence 853 2 4567799999999999999999988877653 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.+||++|.++|.|.+++|++.++...+..++++++....... ..++|++++++.++.+++|..++
T Consensus 436 d~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~ 512 (537)
T PLN02246 436 ELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEI---TEDEIKQFVAKQVVFYKRIHKVF 512 (537)
T ss_pred ceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCC---CHHHHHHHHHhhCcCccccceEE
Confidence 999999999999999999999999999999998877777788888887654332 23579999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhcccc
Q 003331 251 FMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
.+++||+|++||++|++|++.+
T Consensus 513 ~~~~~P~t~~GKi~r~~L~~~~ 534 (537)
T PLN02246 513 FVDSIPKAPSGKILRKDLRAKL 534 (537)
T ss_pred EeccCCCCCcchhhHHHHHHHH
Confidence 9999999999999999998754
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=307.85 Aligned_cols=234 Identities=22% Similarity=0.367 Sum_probs=199.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++++.+.+ +.++++.||+||++..++..... .....++|.|+++++++++
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~---------~~~~~~~G~~~~g~~~~i~ 371 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELT-GLDYVEGYGLTETMAQTHSNPPD---------RPKLQCLGIPTFGVDARVI 371 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHc-CCcEEecccccccccceecCCCc---------CCCCCccCcccCCeEEEEE
Confidence 4568999999999999999999999988 68999999999998655432111 1134579999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.+..|||+|+|+.++.||+++++.+.+.|... ++.+||+|||+++++++|.++++||.|
T Consensus 372 d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~------------~~~~~~~TGDl~~~~~~g~l~~~GR~~ 439 (546)
T PRK08314 372 DPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEI------------DGKRFFRTGDLGRMDEEGYFFITDRLK 439 (546)
T ss_pred eCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhc------------CCCceEecCCEEEEcCCCcEEEEecch
Confidence 854 2 346679999999999999999999888887542 135799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|+||+|.|||++|.++|+|.+++|++.++...+..+++++++....... ...+++++++++.|+.+++|..++
T Consensus 440 d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~P~~~~ 518 (546)
T PRK08314 440 RMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK-TTEEEIIAWAREHMAAYKYPRIVE 518 (546)
T ss_pred hhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC-CCHHHHHHHHHHhcccCCCCcEEE
Confidence 9999999999999999999999999999999988877778899999887653211 123688999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccc
Q 003331 251 FMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~ 271 (829)
++++||+|++||++|++|++.
T Consensus 519 ~v~~iP~t~~GKv~r~~L~~~ 539 (546)
T PRK08314 519 FVDSLPKSGSGKILWRQLQEQ 539 (546)
T ss_pred EecCCCCCCccceeHHHHHHH
Confidence 999999999999999999754
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=286.91 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=181.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+. ++++++.||+||++..|. ..|.|++++++++.
T Consensus 148 ~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~TE~~~~~~-------------------~~G~~~~g~~v~i~ 206 (358)
T PRK07824 148 AALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGMSETSGGCV-------------------YDGVPLDGVRVRVE 206 (358)
T ss_pred CCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccCCccCCCcC-------------------cCceeCCCCEEEec
Confidence 457899999999999999999988764 789999999999875332 24889999999984
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ |||+++|+.++.||+++++.+ .|. ..+||+|||++++ ++|.++++||.||+||
T Consensus 207 ~--------Gei~v~g~~~~~gY~~~~~~~--~~~---------------~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~ 260 (358)
T PRK07824 207 D--------GRIALGGPTLAKGYRNPVDPD--PFA---------------EPGWFRTDDLGAL-DDGVLTVLGRADDAIS 260 (358)
T ss_pred C--------CEEEEecCccccccCCCcccc--ccc---------------CCCceecccEEEE-eCCEEEEEeccCCeEE
Confidence 3 999999999999999987632 221 2469999999999 8999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++++...... ...++|++++++.|+.+++|..++++++
T Consensus 261 ~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~---~~~~~i~~~~~~~l~~~~~P~~i~~v~~ 337 (358)
T PRK07824 261 TGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA---PTLEALRAHVARTLDRTAAPRELHVVDE 337 (358)
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC---cCHHHHHHHHHhhCccccCCCEEEEecC
Confidence 9999999999999999999999999999888877788888887765322 2346899999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccc
Q 003331 255 LPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~ 273 (829)
||+|++||++|++|++.+.
T Consensus 338 lP~t~~GKi~r~~L~~~~~ 356 (358)
T PRK07824 338 LPRRGIGKVDRRALVRRFA 356 (358)
T ss_pred CCCCCCccccHHHHHHHhh
Confidence 9999999999999987654
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-31 Score=300.61 Aligned_cols=242 Identities=27% Similarity=0.454 Sum_probs=201.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++++.++++|+++++++.+++.+.++++++++.||+||++..++....... ........++|.|+++++++|
T Consensus 254 ~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~----~~~~~~~~~vg~~~~~~~~~i 329 (502)
T TIGR01734 254 QENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQE----ILDQYPRLPIGFAKPDMNLFI 329 (502)
T ss_pred cccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcccc----ccccCCccccccccCCCEEEE
Confidence 4567899999999999999999999999999999999999998765443221110 011224567999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+++|+.++.||+++++.+...|... .+.+||+|||+|+++++ .++++||.+
T Consensus 330 ~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~------------~~~~~~~TGDlg~~~~~-~l~i~GR~~ 396 (502)
T TIGR01734 330 MDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSH------------EGQPAYRTGDAGTITDG-QLFYQGRLD 396 (502)
T ss_pred ECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeC------------CCcEEEECCCEEEEECC-EEEEecccc
Confidence 98765 345679999999999999999999888777432 14579999999999876 999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEee-cCCceEEEEEEEEecCCCCch-HHHHHHHHHHHHhcCCCCCcCCe
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK-HQGELVILVAFIVLKEKKTSS-EIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|+||++|++|+|.+||+.+.++|.|.++++++.. .......+++++++....... ....+++++.+++.+|.+++|..
T Consensus 397 d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~ 476 (502)
T TIGR01734 397 FQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRK 476 (502)
T ss_pred CeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcE
Confidence 9999999999999999999999999999999865 444556788888877543322 23447899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++++||+|++||++|++|++..
T Consensus 477 ~~~v~~lP~t~~gKv~r~~l~~~~ 500 (502)
T TIGR01734 477 FIYRDQLPLTANGKIDRKALAEEV 500 (502)
T ss_pred EEEccccCCCCCCcccHHHHHHhh
Confidence 999999999999999999998753
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=301.44 Aligned_cols=230 Identities=23% Similarity=0.305 Sum_probs=199.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++++.+.+.+. ++++++.||+||++..++...... ......++|+|+++++++|+
T Consensus 261 ~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~p~~~~~~~i~ 331 (496)
T PRK06839 261 TNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFMLSEED-------ARRKVGSIGKPVLFCDYELI 331 (496)
T ss_pred CCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEeccccc-------ccccCCCCcccCCCceEEEE
Confidence 457899999999999999999999886 789999999999986544322111 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+|+|+.++.||+++++.+...| .++||+|||+++++++|.+++.||.||
T Consensus 332 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR~~d 395 (496)
T PRK06839 332 DENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI----------------QDGWLCTGDLARVDEDGFVYIVGRKKE 395 (496)
T ss_pred CCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH----------------cCCCeeecceEEEcCCCcEEEeccccc
Confidence 8776 356779999999999999999998877665 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||.+|++|+|.+||++|.++|+|.+++|++.++...+..+++++++++..... .+++++++++.|+.+++|..++.
T Consensus 396 ~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~ 472 (496)
T PRK06839 396 MIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLI---EKDVIEHCRLFLAKYKIPKEIVF 472 (496)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCcEEEE
Confidence 999999999999999999999999999999998887778899999987654332 25799999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++|+|++||++|++|+++.
T Consensus 473 v~~~P~t~~GKi~r~~l~~~~ 493 (496)
T PRK06839 473 LKELPKNATGKIQKAQLVNQL 493 (496)
T ss_pred eccCCCCccccccHHHHHHHh
Confidence 999999999999999998654
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=303.00 Aligned_cols=237 Identities=18% Similarity=0.262 Sum_probs=193.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||++++....+ +.+.+ ++++++.||+||+++.+........ ........++|+|+++++++|+
T Consensus 283 ~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~g~~v~i~ 356 (540)
T PRK05857 283 ATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGCTALCLPTDDG----SIVKIEAGAVGRPYPGVDVYLA 356 (540)
T ss_pred CcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCceeeecccccc----cccccccCCcCcccCCcEEEEE
Confidence 4678999999999999987775 44455 7899999999999854332211100 0001134679999999999999
Q ss_pred cCCCC---------CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 95 ESDTV---------KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 95 d~~~~---------~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
|+++. .++.|||+++|+.++.||+++++.+.+.|. ++||+|||+|+++++|++++
T Consensus 357 d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDlg~~d~~g~l~~ 420 (540)
T PRK05857 357 ATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLI----------------DGWVNTGDLLERREDGFFYI 420 (540)
T ss_pred CccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcC----------------CCceeccceEEEcCCceEEE
Confidence 87653 245699999999999999999998888773 46999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhcCCCC
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLA 243 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~ 243 (829)
.||.||+||++|++|+|.|||.+|..||.|.+|+|++.++...+..++++++....... .+.+.+.+++.+++.++++
T Consensus 421 ~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 500 (540)
T PRK05857 421 KGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPM 500 (540)
T ss_pred eccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999998887666677777766543211 2334566777788889999
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 244 MIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|..+++++++|+|++||++|++|++.+.
T Consensus 501 ~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~ 530 (540)
T PRK05857 501 ARPSTIVIVTDIPRTQSGKVMRASLAAAAT 530 (540)
T ss_pred cCCeEEEEhhcCCCCCCcceeHHHHHHhhh
Confidence 999999999999999999999999987654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-32 Score=313.52 Aligned_cols=231 Identities=20% Similarity=0.238 Sum_probs=186.5
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++..... .....++|+|+++++++|+|.+
T Consensus 376 ~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~p~pg~~v~i~d~~ 445 (651)
T PLN02736 376 GRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGMDEG---------DNLSGHVGSPNPACEVKLVDVP 445 (651)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheeccCCC---------CCCCCccCCccCceEEEEEEcc
Confidence 5899999999999999999998887 68899999999998665533211 1245679999999999999732
Q ss_pred -------CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 98 -------TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 98 -------~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+.+++.|||+|+||+++.||+++|+.|++.|. .++||+|||+|++++||.|+|+||.|
T Consensus 446 ~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~~t~~~~~---------------~dgw~~TGDlg~~d~dG~l~i~GR~k 510 (651)
T PLN02736 446 EMNYTSEDQPYPRGEICVRGPIIFKGYYKDEVQTREVID---------------EDGWLHTGDIGLWLPGGRLKIIDRKK 510 (651)
T ss_pred ccCcccCCCCCCCceEEecCCccccccccCHHHHHhhhc---------------cCCCeeccceEEEcCCCcEEEEEech
Confidence 23445799999999999999999999988873 36899999999999999999999999
Q ss_pred CcEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC---------Cc---------hHHHHHH
Q 003331 171 RTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK---------TS---------SEIFLSS 231 (829)
Q Consensus 171 d~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------~~---------~~~~~~~ 231 (829)
|+||+ +|++|+|.|||++|.+||.|.+|+|++.. .+..++|+|++.... .. .+...+.
T Consensus 511 d~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (651)
T PLN02736 511 NIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGDS---LNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQLCNDPRVRAA 587 (651)
T ss_pred hheEcCCCcEechHHHHHHHhcCCCeeEEEEEecC---CCceeEEEEEeCHHHHHHHHHHcCCCccCHHHHhcCHHHHHH
Confidence 99998 79999999999999999999999999842 345788999886421 00 0111222
Q ss_pred HHHHHH-----hcCCCCCcCCeEEEeCccc------CCCCCCcchhhhcccccccc
Q 003331 232 IKSWVS-----SKLPLAMIPNRFVFMDSLP------MTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 232 l~~~l~-----~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~~ 276 (829)
+.+.+. ..|+.|.+|++|+++++.| +|++||++|+++++.+...+
T Consensus 588 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i 643 (651)
T PLN02736 588 VLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAI 643 (651)
T ss_pred HHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHH
Confidence 222222 2599999999999999886 79999999999988765433
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=312.78 Aligned_cols=234 Identities=21% Similarity=0.284 Sum_probs=188.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+.+.+.+ ++++++.||+||++..++.... ......++|+|+++++++++
T Consensus 476 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~YG~TE~~~~~~~~~~---------~~~~~~svG~p~pg~~~~i~ 545 (718)
T PRK08043 476 YDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGYGVTECAPVVSINVP---------MAAKPGTVGRILPGMDARLL 545 (718)
T ss_pred ccccceEEEEEeCccCCHHHHHHHHHHc-CCCeecccCcccccceEEecCC---------cccCCCCCCCcCCCCeeEEe
Confidence 4578999999999999999999999888 7899999999999866543211 01245689999999999999
Q ss_pred cCCCCCCCCCeEEEccccccccccCC--CCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSE--STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
|.++. +..|||+++|+.++.||+++ ++.+...+..... ....++||+|||+|++++||+++++||.||+
T Consensus 546 d~~~~-~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~--------~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~ 616 (718)
T PRK08043 546 SVPGI-EQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENAR--------GEMERGWYDTGDIVRFDEQGFVQIQGRAKRF 616 (718)
T ss_pred cCCCC-CCceEEEEecCCccccccCCCCccccccccccccc--------ccccCCeEecCCEEEEcCCCcEEEEecCCCe
Confidence 76543 45699999999999999984 4432211110000 0013589999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCeEEE
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRFVF 251 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~~~ 251 (829)
||++|+||+|.|||+++.+|+.+.+++|++.++...++.+++++.. .. ...++++++++++ |+.|++|..+++
T Consensus 617 I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~---~~---~~~~~l~~~~~~~~l~~~~vP~~i~~ 690 (718)
T PRK08043 617 AKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTD---SE---LTREKLQQYAREHGVPELAVPRDIRY 690 (718)
T ss_pred eEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcC---cc---cCHHHHHHHHHhcCCCcccCCceEEE
Confidence 9999999999999999999998888888888777667777776531 11 1235788888887 999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++|||||++|++++.
T Consensus 691 v~~lP~t~~GKi~r~~L~~~~~ 712 (718)
T PRK08043 691 LKQLPLLGSGKPDFVTLKSMVD 712 (718)
T ss_pred ecccCcCCCCCcCHHHHHHHHh
Confidence 9999999999999999987654
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=303.68 Aligned_cols=229 Identities=23% Similarity=0.322 Sum_probs=197.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+.|.+.+ ++++++.||+||++.+++...... .....++|+|++++.++|+
T Consensus 330 ~~~~~lr~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~p~~~~~v~iv 400 (562)
T PRK12492 330 LDFSALKLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNPYGE--------LARLGTVGIPVPGTALKVI 400 (562)
T ss_pred ccccceeEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecCCcc--------cccCCccceecCCCEEEEE
Confidence 4578999999999999999999998876 789999999999987655322110 1134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||+++|+.+.+.|. .++||+|||+++++++|.++|.||.||
T Consensus 401 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~---------------~~g~~~TGD~g~~~~~G~l~i~GR~~~ 465 (562)
T PRK12492 401 DDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALD---------------AEGWFKTGDIAVIDPDGFVRIVDRKKD 465 (562)
T ss_pred CCCCCCCCCCCceEEEEeCCccccccccCchhhhhccc---------------CCCceecCcEEEECCCCeEEEecccCC
Confidence 98763 456799999999999999999998887763 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.+||.|.+++|++.++...++.+++++++..... ..+++++++++.++.+++|..++.
T Consensus 466 ~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~----~~~~i~~~~~~~l~~~~~P~~i~~ 541 (562)
T PRK12492 466 LIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL----SVEELKAYCKENFTGYKVPKHIVL 541 (562)
T ss_pred eEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777777888887654322 235788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|+++
T Consensus 542 ~~~~P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 542 RDSLPMTPVGKILRRELRDI 561 (562)
T ss_pred eccCCCCCCCceeHHHHHhh
Confidence 99999999999999999864
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-31 Score=304.40 Aligned_cols=234 Identities=23% Similarity=0.368 Sum_probs=196.0
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccc--cCCcEEEE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLP--ISNCDIVL 93 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p--~~~~~~~i 93 (829)
.+++||.++++|+++++++++.+.+.+ +.++++.||+||++..++......... ......+.|.+ .+++++++
T Consensus 293 ~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~~~----~~~~~~~~g~~g~~~g~~~~i 367 (534)
T PRK05852 293 KPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFGMTEATHQVTTTQIEGIGQ----TENPVVSTGLVGRSTGAQIRI 367 (534)
T ss_pred cCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccCccccchhhhcCCcccccc----ccCcccccccCCCCCCCeEEE
Confidence 468999999999999999999999988 688999999999986655322211000 00011223444 68999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +++..|||+|+|+.+++||+++++.+.+.|. ++||+|||++++++||++++.||.|
T Consensus 368 ~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~----------------~g~~~TGD~~~~d~dG~l~~~gR~~ 431 (534)
T PRK05852 368 VGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFT----------------DGWLRTGDLGSLSAAGDLSIRGRIK 431 (534)
T ss_pred ECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhc----------------CCCcccCceEEEeCCCcEEEEecch
Confidence 98876 3566799999999999999999999887772 4699999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|.+|+|.+||++|.++|.|.+|+|++.++...+..++++++....... ..++|.++++++||.+++|..++
T Consensus 432 d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~---~~~~i~~~~~~~l~~~~~P~~i~ 508 (534)
T PRK05852 432 ELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPP---TAEELVQFCRERLAAFEIPASFQ 508 (534)
T ss_pred hhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCC---CHHHHHHHHHHhcccccCCeEEE
Confidence 999999999999999999999999999999999887777788888887654322 23678999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++||++|++|++.+.
T Consensus 509 ~v~~iP~t~~GKi~r~~L~~~~~ 531 (534)
T PRK05852 509 EASGLPHTAKGSLDRRAVAEQFG 531 (534)
T ss_pred EhhhcCCCCCccccHHHHHHHhc
Confidence 99999999999999999987653
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=296.97 Aligned_cols=226 Identities=27% Similarity=0.399 Sum_probs=194.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..++++|.+++||+++++++++++.+.+ +.++++.||+||++..++... . ......++|+|++++.++|+
T Consensus 238 ~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~--~-------~~~~~~~vG~~~~g~~~~i~ 307 (471)
T PRK07787 238 RALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTRA--D-------GERRPGWVGLPLAGVETRLV 307 (471)
T ss_pred ccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecCC--C-------CcccCCcccccCCCcEEEEE
Confidence 4578999999999999999999999887 678999999999876443211 1 11234579999999999999
Q ss_pred cCCCCC----CC-CCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDTVK----PD-EGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~~~----~~-~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++.+ +. .|||+++|+.++.||+++++.+.+.|. .++||+|||++++++||.++++||+
T Consensus 308 d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~---------------~~~~~~TGDlg~~~~dg~l~~~GR~ 372 (471)
T PRK07787 308 DEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFT---------------ADGWFRTGDVAVVDPDGMHRIVGRE 372 (471)
T ss_pred CCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhccc---------------CCCceecCceEEEcCCCCEEEeCCC
Confidence 877632 22 699999999999999999999888774 2579999999999999999999996
Q ss_pred -CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 170 -DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 170 -dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|++||++|++|+|.+||++|..++.|.+++|++.++...+..+++++++... ...+++++++++.++.+++|..
T Consensus 373 ~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~l~~~l~~~~~P~~ 447 (471)
T PRK07787 373 STDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADD-----VAADELIDFVAQQLSVHKRPRE 447 (471)
T ss_pred CceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCC-----CCHHHHHHHHHhhcccccCCcE
Confidence 8999999999999999999999999999999998887777889999887332 1235788999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~ 270 (829)
++++++||+|++||++|++|++
T Consensus 448 i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 448 VRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEeccCCCCCCccccHHHhcc
Confidence 9999999999999999999975
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=302.94 Aligned_cols=233 Identities=23% Similarity=0.328 Sum_probs=197.4
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT 98 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~ 98 (829)
+||.+++|||++++++++++.+.++++++++.||+||+++++........ ........++|.|+++++++++|++.
T Consensus 304 ~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~----~~~~~~~~~vG~~~~~~~v~i~d~~~ 379 (546)
T PLN02330 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEK----GHGIAKKNSVGFILPNLEVKFIDPDT 379 (546)
T ss_pred eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccc----cccccccCccccccCCcEEEEEeCCC
Confidence 57999999999999999999999989999999999999765432211110 00012345799999999999998432
Q ss_pred ----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 99 ----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 99 ----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+.++.|||+++|++++.||+++++.+.+.|. .++||+|||+++++++|.++++||.||+||
T Consensus 380 ~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~ 444 (546)
T PLN02330 380 GRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTID---------------EDGWLHTGDIGYIDDDGDIFIVDRIKELIK 444 (546)
T ss_pred CccCCCCCceEEEEecchhhhhhccCccchhhhcc---------------CCCceecccEEEEeCCCcEEEEechHHhhh
Confidence 3567899999999999999999988876652 367999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.+++.|.+++|++.++...+..+++++++...... ..+++++++++.|+.+++|..++.+++
T Consensus 445 ~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~~~~v~~ 521 (546)
T PLN02330 445 YKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKE---SEEDILNFVAANVAHYKKVRVVQFVDS 521 (546)
T ss_pred cCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCC---CHHHHHHHHHHhcccccCceEEEEecc
Confidence 99999999999999999999999999998887777788888887754322 235789999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccc
Q 003331 255 LPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~ 273 (829)
+|+|++||++|++|++.+.
T Consensus 522 iP~t~~GK~~r~~L~~~~~ 540 (546)
T PLN02330 522 IPKSLSGKIMRRLLKEKML 540 (546)
T ss_pred CCCCCCcceeHHHHHHHHH
Confidence 9999999999999988664
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=300.12 Aligned_cols=231 Identities=24% Similarity=0.370 Sum_probs=196.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~ 92 (829)
...+++||.+++||+++++++.+.+.+.+ ++++++.||+||+...++.... + ......++|+|+ +++.++
T Consensus 296 ~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~---~-----~~~~~~~~G~p~~~~~~v~ 366 (536)
T PRK10946 296 RAQLASLKLLQVGGARLSETLARRIPAEL-GCQLQQVFGMAEGLVNYTRLDD---S-----DERIFTTQGRPMSPDDEVW 366 (536)
T ss_pred cccccceeEEEECCCCCCHHHHHHHHHhc-CCeEEEeecccccceeeecCCC---c-----cccccccCCcccCCCceEE
Confidence 35578999999999999999999998888 7899999999997644332111 0 112346789998 789999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
++|+++ +.++.|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|.++++||.
T Consensus 367 i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~---------------d~~~~TGDl~~~d~~G~l~~~gR~ 431 (536)
T PRK10946 367 VADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLVSIDPDGYITVVGRE 431 (536)
T ss_pred EECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhccc---------------CCceecCceEEECCCCcEEEeccc
Confidence 998765 35677999999999999999999998887742 579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~ 248 (829)
||+||++|++|+|.+||+.|.++|+|.+++++..++...+..+++++++... .. ..++++++++. +|.|++|..
T Consensus 432 ~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~-~~----~~~l~~~~~~~~l~~~~~P~~ 506 (536)
T PRK10946 432 KDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP-LK----AVQLRRFLREQGIAEFKLPDR 506 (536)
T ss_pred cceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC-CC----HHHHHHHHHhCCccccccCcE
Confidence 9999999999999999999999999999999999887767788888887654 22 24788888876 999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++.++++|+|++||++|++|++.+.
T Consensus 507 ~~~~~~iP~t~~GKv~r~~L~~~~~ 531 (536)
T PRK10946 507 VECVDSLPLTAVGKVDKKQLRQWLA 531 (536)
T ss_pred EEEeccCCCCCCCcccHHHHHHHHH
Confidence 9999999999999999999987643
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-32 Score=311.82 Aligned_cols=256 Identities=18% Similarity=0.211 Sum_probs=193.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCcc---------------c--
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSI---------------L-- 72 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~---------------~-- 72 (829)
.++++||.+++||++++++++++|.+.++ ...++|.||+||++..++.......+.. .
T Consensus 303 ~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 382 (631)
T PRK07769 303 LDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPA 382 (631)
T ss_pred cchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCC
Confidence 46789999999999999999999998862 3469999999999866554321110000 0
Q ss_pred -ccCCCCccccccccCCcEEEEecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCc--CCCCC
Q 003331 73 -EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCS--VSCGS 145 (829)
Q Consensus 73 -~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~--~~~~~ 145 (829)
........++|+|+++..++|+|++ + +.++.|||+|+|++++.||+++++.|.+.|...+..+..... .....
T Consensus 383 ~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~ 462 (631)
T PRK07769 383 DAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDD 462 (631)
T ss_pred CCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccC
Confidence 0001123579999999999999853 2 356789999999999999999999999998642211000000 00123
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeE--EEEEEeec-----------------
Q 003331 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKH----------------- 205 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~--~~v~~~~~----------------- 205 (829)
.+||+|||+|+++ +|+|+|+||.||+||++|+||+|.|||++|.+ ||.|.+ ++|++.++
T Consensus 463 ~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~ 541 (631)
T PRK07769 463 ALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKF 541 (631)
T ss_pred CCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEeccccccccccccccccccc
Confidence 5899999999984 99999999999999999999999999999996 899997 88888877
Q ss_pred --CCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCC-CC-cCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 206 --QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL-AM-IPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 206 --~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~-~~-~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
+..++.+++++++..+... ...++|.++++++++. +. .|+.+++++ +||+|++|||+|++|++.+.
T Consensus 542 ~~~~~ge~~~a~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~ 613 (631)
T PRK07769 542 DPEDTSEQLVIVAERAPGAHK--LDPQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYL 613 (631)
T ss_pred ccCCCCccEEEEEEecCcccc--ccHHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHH
Confidence 4466778889888764211 1235788888888885 55 588888886 69999999999999987654
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=304.58 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=191.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||+++++...++.+.++..+++|.||+||++..+...... ......++|.|+++++++++
T Consensus 468 ~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~--------~~~~~g~~g~p~~g~~v~v~ 539 (728)
T PLN03052 468 LDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLL--------QPQAFAAFSTPAMGCKLFIL 539 (728)
T ss_pred CChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCC--------CCCCCCccccCCCCceEEEE
Confidence 4688999999999999999988888876546799999999987543321110 01134578999999999999
Q ss_pred cCCCCC---C--CCCeEEEccc--cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 95 ESDTVK---P--DEGEIYAGGL--CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 95 d~~~~~---~--~~Gel~i~g~--~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+++.+ + +.|||+++++ +...+|+++. .....|...+.. .+.+||+|||+++++++|.++|+|
T Consensus 540 d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~~p~~---------~g~~~~~tGDl~~~d~dG~l~i~G 609 (728)
T PLN03052 540 DDSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKGMPVF---------NGKILRRHGDIFERTSGGYYRAHG 609 (728)
T ss_pred CCCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhcCCCC---------CCCEEEecCceEEECCCCeEEEEe
Confidence 987743 3 2499999865 3345777764 233334322211 135699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHh-CCCCeeEEEEEEeecCCce-EEEEEEEEec--CCCC-chHHHHHHHHHHHHhcCCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLR-GHPDVVDTAVVSHKHQGEL-VILVAFIVLK--EKKT-SSEIFLSSIKSWVSSKLPL 242 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~-~~~~v~~~~v~~~~~~~~~-~~~~~~v~~~--~~~~-~~~~~~~~l~~~l~~~l~~ 242 (829)
|.||+||++|+||+|.|||++|. .||.|.+++|++.+++..+ +.+++||+++ ++.. ..+++.+.+++++++.|++
T Consensus 610 R~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~ 689 (728)
T PLN03052 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNP 689 (728)
T ss_pred cCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999995 7999999999999887554 7899999987 3332 3356777888889999999
Q ss_pred CCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 243 AMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 243 ~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|..++++++||+|++|||+|+.|++.+.
T Consensus 690 ~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~ 720 (728)
T PLN03052 690 LFKVSAVVIVPSFPRTASNKVMRRVLRQQLA 720 (728)
T ss_pred ccCCCEEEEcCCCCCCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999987654
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-31 Score=297.62 Aligned_cols=226 Identities=22% Similarity=0.302 Sum_probs=192.7
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+.+.++++|++++.++.+++.+.+|++++++.||+||++.++.... . .......++|+|++++.++|+|+
T Consensus 252 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~-~-------~~~~~~~~~G~~~~~~~~~i~d~ 323 (487)
T PRK07638 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVD-E-------ESERRPNSVGRPFHNVQVRICNE 323 (487)
T ss_pred CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecc-c-------ccCCCCCCCCcccCCcEEEEECC
Confidence 345666788999999999999999999999999999999986654321 1 01235568999999999999987
Q ss_pred CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 97 DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 97 ~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
++ +++..|||+++|+.++.||+++++.+.+.+ .++||+|||+++++++|+++++||.||+|
T Consensus 324 ~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~d~~g~l~i~GR~~d~i 387 (487)
T PRK07638 324 AGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN----------------ADGWMTVRDVGYEDEEGFIYIVGREKNMI 387 (487)
T ss_pred CCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc----------------cCCcEecCccEeEcCCCeEEEEecCCCeE
Confidence 76 356779999999999999999887654432 36799999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeC
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 253 (829)
|++|++|+|.+||++|.++|.|.+++|++.+++..+..+++++... ...+++++++++.++.+++|..+++++
T Consensus 388 ~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~-------~~~~~l~~~~~~~l~~~~~p~~i~~v~ 460 (487)
T PRK07638 388 LFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGS-------ATKQQLKSFCLQRLSSFKIPKEWHFVD 460 (487)
T ss_pred EeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECC-------CCHHHHHHHHHHHhhcccCCcEEEEec
Confidence 9999999999999999999999999999988876667777777631 234678889999999999999999999
Q ss_pred cccCCCCCCcchhhhccccc
Q 003331 254 SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 254 ~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|+|++||++|++|++.+.
T Consensus 461 ~iP~t~~GKv~r~~L~~~~~ 480 (487)
T PRK07638 461 EIPYTNSGKIARMEAKSWIE 480 (487)
T ss_pred ccCCCCcccccHHHHHHHHh
Confidence 99999999999999987654
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=302.28 Aligned_cols=238 Identities=21% Similarity=0.303 Sum_probs=198.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+++.+.+ +..+++.||+||++..++..... .............++|.|+++++++++
T Consensus 277 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~g~~~~i~ 354 (528)
T PRK07470 277 YDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGLGEVTGNITVLPPA-LHDAEDGPDARIGTCGFERTGMEVQIQ 354 (528)
T ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCCcccCCceeecchh-hccccccccceeeccCcccCCcEEEEE
Confidence 4578999999999999999999998887 57899999999998655432111 000000012244678999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||++.|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 355 d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~~~GR~dd 418 (528)
T PRK07470 355 DDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF----------------RDGWFRTGDLGHLDARGFLYITGRASD 418 (528)
T ss_pred CCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh----------------cCCcEecceeEEEccCCeEEEeCCccc
Confidence 87663 45679999999999999999998887766 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.+||++|.+++.|.+++|++.++...+...+++++..+.... ..+++++++++.||.+++|..+++
T Consensus 419 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l~~~~~P~~~~~ 495 (528)
T PRK07470 419 MYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPV---DEAELLAWLDGKVARYKLPKRFFF 495 (528)
T ss_pred eEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCC---CHHHHHHHHHHhhhcCCCCcEEEE
Confidence 99999999999999999999999999999998887666677788877654322 235788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|+.|++.+.
T Consensus 496 ~~~iP~t~~GKi~r~~l~~~~~ 517 (528)
T PRK07470 496 WDALPKSGYGKITKKMVREELE 517 (528)
T ss_pred eccCCCCCcccccHHHHHHHHH
Confidence 9999999999999999987654
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=297.76 Aligned_cols=227 Identities=26% Similarity=0.417 Sum_probs=193.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccC-CcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS-NCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~-~~~~~i 93 (829)
..+++||.+++||+++++++.+++.+.+ ++++++.||+||++..++.... .......++|+|++ +..+++
T Consensus 296 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~--------~~~~~~~~~G~~~~~~~~v~i 366 (527)
T TIGR02275 296 YDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQQVFGMAEGLVNYTRLDD--------PAEIIFTTQGRPMSPDDEVRV 366 (527)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEEeeeccCccCccccCCCC--------ccccccccCCCCCCCCceEEE
Confidence 4578999999999999999999999887 7899999999997543322110 01123457899994 789999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++. .++.|||+++|+.++.||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 367 ~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~---------------~dg~~~TGDl~~~~~~g~l~~~gR~~ 431 (527)
T TIGR02275 367 VDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFD---------------AEGFYYTGDLVRLTPEGYIVVVGRAK 431 (527)
T ss_pred ECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcC---------------cCCCEEcCceEEEcCCccEEEEeccc
Confidence 987663 567799999999999999999998877763 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~~ 249 (829)
|+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++..... ...+|+++++++ +|.+++|..+
T Consensus 432 d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~----~~~~l~~~l~~~~l~~~~~P~~i 507 (527)
T TIGR02275 432 DQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPAL----KAAQLRRFLRERGLAEYKLPDRV 507 (527)
T ss_pred ceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCC----CHHHHHHHHHhCCCccccCCCEE
Confidence 99999999999999999999999999999999998877778889988765432 235788999875 9999999999
Q ss_pred EEeCcccCCCCCCcchhhhc
Q 003331 250 VFMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++||+|++||++|++|+
T Consensus 508 ~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 508 EFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EEeccCCCCCccceeHHhcC
Confidence 99999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=301.92 Aligned_cols=235 Identities=21% Similarity=0.326 Sum_probs=200.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||+++.++++.+.+.++..++++.||+||++.+++...... .......++|+|++++.++++
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~------~~~~~~~~vG~p~~~~~v~i~ 385 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDD------PLEKRVTTVGRALPHLEVKIV 385 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCccc------chhhccCCCCccCCCcEEEEE
Confidence 35789999999999999999999999986677999999999987655332211 011245789999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+|+|+.++.||+++|..+...|. ..+||+|||+++++++|.++++||.|
T Consensus 386 d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGD~~~~~~dg~~~~~GR~d 450 (559)
T PRK08315 386 DPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAID---------------ADGWMHTGDLAVMDEEGYVNIVGRIK 450 (559)
T ss_pred cCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCC---------------CCCCEEccceEEEcCCceEEEEeecc
Confidence 877 4 3567899999999999999999988776652 25799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||++|.+++.|.+++|+..++...+..+++++++...... ..+++++++++.+|.+++|..++
T Consensus 451 ~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~~i~ 527 (559)
T PRK08315 451 DMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATL---TEEDVRDFCRGKIAHYKIPRYIR 527 (559)
T ss_pred ceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCC---CHHHHHHHHHhhcccccCCcEEE
Confidence 999999999999999999999999999999998887666778888887654322 23578899999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++|+|++||++|.+|++.+.
T Consensus 528 ~v~~lP~t~~GK~~r~~L~~~~~ 550 (559)
T PRK08315 528 FVDEFPMTVTGKIQKFKMREMMI 550 (559)
T ss_pred EcccCCCCCCCceeHHHHHHHHH
Confidence 99999999999999999987643
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=295.21 Aligned_cols=232 Identities=25% Similarity=0.308 Sum_probs=195.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccc-cccCCCcccccCCCCccccccccCCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYF-DCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..+++||.+++||++++.+..+.+.+. ++++++.||+||++...... .+.. ......++|.|++++++++
T Consensus 249 ~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~vG~~~~~~~~~i 319 (488)
T PRK09088 249 AALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDV-------IRAKAGAAGIPTPTVQTRV 319 (488)
T ss_pred cccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCccc-------ccccCCccccCCCCcEEEE
Confidence 456799999999999999988888764 68899999999998644321 1110 0113467999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ +.+..|||+|+|+.++.||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 320 ~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i~GR~~ 384 (488)
T PRK09088 320 VDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFT---------------GDGWFRTGDIARRDADGFFWVVDRKK 384 (488)
T ss_pred ECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhc---------------CCCCeeecceEEEcCCCcEEEecccc
Confidence 98765 3456799999999999999999988877663 35899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||++|..+|.|.+++|++.+++..+...+++++++..... ..+++++++++.++.+++|..++
T Consensus 385 d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~ 461 (488)
T PRK09088 385 DMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPL---DLERIRSHLSTRLAKYKVPKHLR 461 (488)
T ss_pred ceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCC---CHHHHHHHHHhhCcCCCCCCEEE
Confidence 999999999999999999999999999999998876656677788877654321 24678999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++||+|++||++|++|++++.
T Consensus 462 ~~~~iP~t~~gKi~r~~l~~~~~ 484 (488)
T PRK09088 462 LVDALPRTASGKLQKARLRDALA 484 (488)
T ss_pred EcccCCCCCCCceeHHHHHHHHH
Confidence 99999999999999999987653
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=297.09 Aligned_cols=227 Identities=22% Similarity=0.334 Sum_probs=192.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++.+.+++.+.+ +++++|.||+||++.+++...... ......++|+|+++++++++
T Consensus 307 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~g~~v~i~ 378 (538)
T TIGR03208 307 APVPSLFTFLCAGAPIPGILVERAWELL-GALIVSAWGMTENGAVTVTEPDDA-------LEKASTTDGRPLPGVEVKVI 378 (538)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHc-CCeEEeeeccCcCCCccccCcccc-------hhhccCcccccCCCCEEEEE
Confidence 4578999999999999999999999888 689999999999986654322110 01124578999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|++++.||+++|+.+.. ..++||+|||+++++++|.++++||.||
T Consensus 379 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~-----------------~~~~~~~TGD~~~~~~~g~l~~~gR~~~ 441 (538)
T TIGR03208 379 DANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNST-----------------DAEGWFDTGDLAFQDAEGYIRINGRSKD 441 (538)
T ss_pred CCCCCCCcCCCCcEEEEecCcccccccCCcccccc-----------------cCCCceeccceEEECCCCcEEEEeccCc
Confidence 8765 3456799999999999999999876541 1368999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~ 250 (829)
+||++|++|+|.+||++|.+||.|.+++|++.++...+..+++++++....... .+++++++++ .++.+++|..++
T Consensus 442 ~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~ 518 (538)
T TIGR03208 442 VIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLE 518 (538)
T ss_pred eEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhcchhhccCCcEEE
Confidence 999999999999999999999999999999988877777888998886543222 3567888875 799999999999
Q ss_pred EeCcccCCCCCCcchhhhc
Q 003331 251 FMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++|+|++||++|++|+
T Consensus 519 ~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 519 VVDALPATPAGKIQKFRLR 537 (538)
T ss_pred EeccCCCCCccccchHhhc
Confidence 9999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=300.59 Aligned_cols=235 Identities=21% Similarity=0.309 Sum_probs=201.1
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++++.+.++...+++.||+||++..++....... ......++|+|++++.++++
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~------~~~~~~~vG~p~~~~~~~i~ 387 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADD------LERRVETVGRTQPHLEVKVV 387 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccc------cccccCCCCccCCCCeEEEE
Confidence 357899999999999999999999999877789999999999876553221110 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||++++..+...|. ..+||+|||+++++++|.+++.||.||
T Consensus 388 d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~~~~~TGDl~~~~~dg~l~i~GR~~~ 452 (558)
T PRK12583 388 DPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESID---------------EDGWMHTGDLATMDEQGYVRIVGRSKD 452 (558)
T ss_pred CCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcC---------------CCCCeeccceEEECCCccEEEEecccc
Confidence 8875 3456799999999999999999988776652 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.+|+|.+||+.|.++|.|.+++|++.++...+..++++++....... ...++++++++.||.+++|..++.
T Consensus 453 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~i~~~~~~~L~~~~~P~~i~~ 529 (558)
T PRK12583 453 MIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAA---SEEELREFCKARIAHFKVPRYFRF 529 (558)
T ss_pred eeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCC---CHHHHHHHHHhhcccCcCCcEEEE
Confidence 99999999999999999999999999999998887667788888887654322 236899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|++|++++.
T Consensus 530 v~~lP~t~sGK~~r~~L~~~~~ 551 (558)
T PRK12583 530 VDEFPMTVTGKVQKFRMREISI 551 (558)
T ss_pred eccCCCCCCCCccHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=296.15 Aligned_cols=232 Identities=21% Similarity=0.284 Sum_probs=198.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++||+++++++++.+.+.+ +.++++.||+||++..++... .......++|.|++++++++
T Consensus 265 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~---------~~~~~~~~~G~~~~~~~v~i 334 (504)
T PRK07514 265 REAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMNTSNPY---------DGERRAGTVGFPLPGVSLRV 334 (504)
T ss_pred cccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeecccccccccccCCc---------cccccCcccccCCCCcEEEE
Confidence 34578999999999999999999999987 678999999999876543211 01123467999999999999
Q ss_pred ec-CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d-~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+| +++ +.+..|||+|+|++++.||+++++.+.+.|.. .+||+|||+++++++|.++++||.
T Consensus 335 ~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGDl~~~~~~g~~~~~GR~ 399 (504)
T PRK07514 335 TDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRA---------------DGFFITGDLGKIDERGYVHIVGRG 399 (504)
T ss_pred EECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhccc---------------CCCeeecceEEEcCCccEEEeccc
Confidence 98 433 24567999999999999999999988887742 569999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++.++++|.+++|++.++...+..++++++........ .+++++.+++.++.+++|..+
T Consensus 400 ~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i 476 (504)
T PRK07514 400 KDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALD---EAAILAALKGRLARFKQPKRV 476 (504)
T ss_pred cceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCC---HHHHHHHHHhhcccCCCCcEE
Confidence 99999999999999999999999999999999988876667788888876543322 357888999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.++++|+|++||++|++|++.+.
T Consensus 477 ~~v~~~p~t~~gK~~r~~l~~~~~ 500 (504)
T PRK07514 477 FFVDELPRNTMGKVQKNLLREQYA 500 (504)
T ss_pred EEeccCCCCCCcceeHHHHHHHHH
Confidence 999999999999999999987653
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=299.01 Aligned_cols=234 Identities=24% Similarity=0.359 Sum_probs=203.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||++++.++.+.+.+.+++..+++.||+||++.+++...... ......++|+|+++++++|+
T Consensus 283 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 355 (523)
T PRK08316 283 RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEE-------HLRRPGSAGRPVLNVETRVV 355 (523)
T ss_pred CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccc-------cccccCCcccCCCCcEEEEE
Confidence 45789999999999999999999999988899999999999987665432111 11245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...| .++||+|||+|+++++|.++++||.||
T Consensus 356 ~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGDl~~~~~~g~l~i~gR~~~ 419 (523)
T PRK08316 356 DDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF----------------RGGWFHSGDLGVMDEEGYITVVDRKKD 419 (523)
T ss_pred cCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHh----------------hCCCeeccceEEEcCCceEEEeccccc
Confidence 8765 346679999999999999999998888776 357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||+.|.+++.|.+++|++.+++..+..++++++++..... ..+.+++++++.++.+++|..++.
T Consensus 420 ~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~ 496 (523)
T PRK08316 420 MIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV---TEDELIAHCRARLAGFKVPKRVIF 496 (523)
T ss_pred EEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEEE
Confidence 99999999999999999999999999999998888777788888888755322 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++|+|++||++|++|++.++.
T Consensus 497 v~~~p~t~~gKi~r~~l~~~~~~ 519 (523)
T PRK08316 497 VDELPRNPSGKILKRELRERYAG 519 (523)
T ss_pred ecCCCCCCccceeHHHHHHHHHh
Confidence 99999999999999999987753
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-31 Score=300.26 Aligned_cols=231 Identities=23% Similarity=0.336 Sum_probs=199.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+.+.+.+ +.++++.||+||++++++..... ......++|.|++++.++++
T Consensus 333 ~~~~~lr~i~~gg~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~ 403 (573)
T PRK05605 333 VDLSGVRNAFSGAMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNPMS--------DDRRPGYVGVPFPDTEVRIV 403 (573)
T ss_pred CCchhccEEEECCCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCCcc--------cCCcCCccccCCCCCEEEEE
Confidence 3578999999999999999999998876 68899999999998766543211 11245689999999999999
Q ss_pred cCCC-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 ESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ +.+..|||+++|+.++.||+++++.+.+.|. .+||+|||+++++++|.++++||.
T Consensus 404 d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~g~~~TGD~~~~~~~g~l~i~gR~ 467 (573)
T PRK05605 404 DPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFL----------------DGWFRTGDVVVMEEDGFIRIVDRI 467 (573)
T ss_pred cCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhccc----------------CCCcccCCEEEEcCCCcEEEEecc
Confidence 8654 3466799999999999999999988887762 359999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++..++.|.++++++.++...+..+++++++..+.... .++|++++++.|+.+++|..+
T Consensus 468 dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i 544 (573)
T PRK05605 468 KELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD---PEGLRAYCREHLTRYKVPRRF 544 (573)
T ss_pred ccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---HHHHHHHHHHhCccccCCcEE
Confidence 99999999999999999999999999999999988877778888988887653222 368999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+.+++||+|++||++|++|++++.
T Consensus 545 ~~~~~iP~t~~GKi~r~~L~~~~~ 568 (573)
T PRK05605 545 YHVDELPRDQLGKVRRREVREELL 568 (573)
T ss_pred EEeccCCCCCcccccHHHHHHHHH
Confidence 999999999999999999987553
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-31 Score=326.98 Aligned_cols=240 Identities=24% Similarity=0.319 Sum_probs=197.6
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccc-ccCCCCccccccccCCcEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL-EMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~ 92 (829)
..++++||.+++|||++++++.+.+++.+ ++++++.||+||++..++........... ........++|+|+++++++
T Consensus 894 ~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~ 972 (1146)
T PRK08633 894 PLMFASLRLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVR 972 (1146)
T ss_pred cccCCCeeeEEEcCCcCCHHHHHHHHHHh-CCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEE
Confidence 45678999999999999999999999988 68999999999998766543211100000 11122466899999999999
Q ss_pred EecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 93 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
++|++. ++++.|||+++|+.++.||+++|+.+.+.|... ++++||+|||++++++||.++++||
T Consensus 973 i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~------------~~~~~~~TGD~~~~~~~g~l~~~gR 1040 (1146)
T PRK08633 973 IVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDI------------DGIGWYVTGDKGHLDEDGFLTITDR 1040 (1146)
T ss_pred EEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcC------------CCCCeEECCCEEEEcCCceEEEEec
Confidence 998643 457789999999999999999999998877431 1458999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCC--CeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCc
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHP--DVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMI 245 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~--~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~ 245 (829)
.||+||++|++|+|.|||++|.+|| .+.+++|++.+++..++.++++++... . ..+++++++.+ .+|.+++
T Consensus 1041 ~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~--~----~~~~l~~~~~~~~l~~~~~ 1114 (1146)
T PRK08633 1041 YSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA--E----DVEELKRAIKESGLPNLWK 1114 (1146)
T ss_pred ccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc--c----CHHHHHHHHHhcCCCcccC
Confidence 9999999999999999999999998 466789999888877888888887621 1 12467777764 6999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|..++.++++|+|++||+||++|++..
T Consensus 1115 P~~i~~~~~iP~t~~GKi~r~~L~~~~ 1141 (1146)
T PRK08633 1115 PSRYFKVEALPLLGSGKLDLKGLKELA 1141 (1146)
T ss_pred CcEEEEecCcCCCCCCCCcHHHHHHHH
Confidence 999999999999999999999998754
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=296.64 Aligned_cols=233 Identities=21% Similarity=0.348 Sum_probs=199.4
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++||+++++++++.+.+.+++.++++.||+||++.+++...... ......++|+|++++.++++|++
T Consensus 290 ~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~d~~ 362 (542)
T PRK07786 290 LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGED-------AIRKLGSVGKVIPTVAARVVDEN 362 (542)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCccc-------ccccCCCccccCCCceEEEECCC
Confidence 37999999999999999999999998999999999999986654322111 01234679999999999999876
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ +.+..|||++.|+.+++||+++++.+...| ..+||+|||+++++++|.++++||.||+||
T Consensus 363 ~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f----------------~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~ 426 (542)
T PRK07786 363 MNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF----------------AGGWFHSGDLVRQDEEGYVWVVDRKKDMII 426 (542)
T ss_pred CCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh----------------hCCcccccceEEEcCCceEEEEecccceEE
Confidence 5 345679999999999999999999888777 247999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|++|+|.+||++|.++|.|.+++|++.++...+..+++++++...... ...+++++++++.++.+++|..++++++
T Consensus 427 ~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~ 504 (542)
T PRK07786 427 SGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAA--LTLEDLAEFLTDRLARYKHPKALEIVDA 504 (542)
T ss_pred eCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCC--CCHHHHHHHHHhhccCCCCCCEEEEecc
Confidence 99999999999999999999999999988776666677888877654321 2346889999999999999999999999
Q ss_pred ccCCCCCCcchhhhccccccc
Q 003331 255 LPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~~ 275 (829)
||+|++||++|++|++.+...
T Consensus 505 iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 505 LPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred CCCCCcccccHHHHHHHHHhh
Confidence 999999999999999877644
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=291.60 Aligned_cols=242 Identities=29% Similarity=0.482 Sum_probs=203.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.++++|+++++.+.+++.+.+++..+++.||+||++..++...... . ........++|+|.++++++|
T Consensus 256 ~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~~~~~~i 331 (503)
T PRK04813 256 EEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITD--E--MLDQYKRLPIGYAKPDSPLLI 331 (503)
T ss_pred cccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecc--c--ccccCCCCcccccCCCCEEEE
Confidence 456789999999999999999999999998899999999999976544322111 0 011234567999999999999
Q ss_pred ecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++. .++.|||+++|+.++.||+++++.+...|... .+.+||+|||++++ ++|.+++.||.|
T Consensus 332 ~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~------------~g~~~~~tGD~~~~-~~g~~~~~GR~~ 398 (503)
T PRK04813 332 IDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTF------------DGQPAYHTGDAGYL-EDGLLFYQGRID 398 (503)
T ss_pred ECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccC------------CCceeEECCceEEe-eCCeEEEecccc
Confidence 987663 46679999999999999999999888877532 14579999999999 999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-CchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-TSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|++|+|.+||+.+.++|.|.+++|++.+++.....+++++++.... .....+.+++++++++.++.+++|..+
T Consensus 399 d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i 478 (503)
T PRK04813 399 FQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKF 478 (503)
T ss_pred ceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEE
Confidence 9999999999999999999999999999999877766667888888876542 222345568999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+.++++|+|++||++|++|++.+
T Consensus 479 ~~~~~~P~t~~gKv~r~~l~~~~ 501 (503)
T PRK04813 479 IYRDSLPLTPNGKIDRKALIEEV 501 (503)
T ss_pred EEeccCCCCCCCCCcHHHHHHHh
Confidence 99999999999999999998754
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=298.09 Aligned_cols=253 Identities=21% Similarity=0.254 Sum_probs=202.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+||.+++|||++++.+.+++.+.+ ++++++.||+||++..++......... .........++|++.++++++++++
T Consensus 297 ~~~l~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~~~ 374 (576)
T PRK05620 297 RMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTETSPVGTVARPPSGVS-GEARWAYRVSQGRFPASLEYRIVND 374 (576)
T ss_pred cCceeEEEEcCCCCCHHHHHHHHHHh-CCceeeeccccccccceeeeccCCccc-cccccccccccCCcCCceeEEEecC
Confidence 45899999999999999999998887 688999999999987665432211000 0000012347899999999999986
Q ss_pred CCC----CCCCCeEEEccccccccccCCCCCC----cccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 97 DTV----KPDEGEIYAGGLCLSNGYFSESTFM----PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 97 ~~~----~~~~Gel~i~g~~~~~gy~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
... .+..|||+++|+.++.||+++++.+ ...|...+..... .....++||+|||++++++||.++++||
T Consensus 375 g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~---~~~~~~g~~~TGD~~~~~~dg~l~~~GR 451 (576)
T PRK05620 375 GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDAN---DRFTADGWLRTGDVGSVTRDGFLTIHDR 451 (576)
T ss_pred CccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhh---cccccCCcEecCceEEEcCCceEEEEec
Confidence 221 2456999999999999999999888 5566543321000 0011357999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||++|.+||.|.+++|++.++...++.+++++++.++....+...++|+++++++||.+++|..
T Consensus 452 ~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~ 531 (576)
T PRK05620 452 ARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEY 531 (576)
T ss_pred hhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeE
Confidence 99999999999999999999999999999999999887777788888887765443334457899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++++||+|++||++|++|+++++.
T Consensus 532 i~~v~~~P~t~~GKv~r~~L~~~~~~ 557 (576)
T PRK05620 532 WTFVDEIDKTSVGKFDKKDLRQHLAD 557 (576)
T ss_pred EEEeccCCCCCcccCcHHHHHHHHhc
Confidence 99999999999999999999887653
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=293.76 Aligned_cols=232 Identities=23% Similarity=0.321 Sum_probs=196.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++++.+.+.++...++|.||+||++++++....... ......++|.|+++++++++
T Consensus 278 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~------~~~~~~~vG~~~~~~~~~i~ 351 (513)
T PRK07656 278 EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDD------RKTVAGTIGTAIAGVENKIV 351 (513)
T ss_pred CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCcccc------ccccCCCccccCCCcEEEEE
Confidence 367899999999999999999999998843389999999999876654322110 01124689999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||++++..+...|. .++||+|||+++++++|.++++||.||
T Consensus 352 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~~~~~tGDl~~~~~~g~~~~~GR~~d 416 (513)
T PRK07656 352 NELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAID---------------ADGWLHTGDLGRLDEEGYLYIVDRKKD 416 (513)
T ss_pred CCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhc---------------cCCceeccceEEEcCCeeEEEEecccc
Confidence 87663 456799999999999999999887776552 357999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.+|+|.+||+.|.++++|.+++|++.++...+..++++++.+..... ..+++++++++.||.+++|..++.
T Consensus 417 ~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~ 493 (513)
T PRK07656 417 MFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAEL---TEEELIAYCREHLAKYKVPRSIEF 493 (513)
T ss_pred eEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCC---CHHHHHHHHHhhcccccCCCEEEE
Confidence 99999999999999999999999999999998877767788888887653222 235788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhcc
Q 003331 252 MDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~ 270 (829)
+++||+|++||++|++|++
T Consensus 494 v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 494 LDELPKNATGKVLKRALRE 512 (513)
T ss_pred ecCCCCCCccceeHHHHhc
Confidence 9999999999999999864
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.9e-31 Score=295.24 Aligned_cols=233 Identities=19% Similarity=0.242 Sum_probs=201.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++++++.+.+ +..+++.||+||++.+++... ... .....++|+|+ ++.++++|
T Consensus 260 ~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~~-~~~-------~~~~~~~G~~~-~~~~~i~d 329 (502)
T PRK08276 260 DVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVITS-EDW-------LAHPGSVGKAV-LGEVRILD 329 (502)
T ss_pred CcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEecC-ccc-------cccCCCcceec-ccEEEEEC
Confidence 578999999999999999999999987 678999999999987554321 110 11345789999 88999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|+.++.||+++++.+.+.|.. ++||+|||+++++++|.+++.||.|++
T Consensus 330 ~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~~~~~~~g~~~~~GR~~~~ 394 (502)
T PRK08276 330 EDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNP---------------HGWVTVGDVGYLDEDGYLYLTDRKSDM 394 (502)
T ss_pred CCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcC---------------CCceeecceEEEcCCcCEEEeccCcce
Confidence 7653 4567999999999999999999888877742 489999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
+|++|++|+|.+||.+|.++|.|.++++++..+...++.++++++++......+...++++..+++.++.+++|..++.+
T Consensus 395 i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~ 474 (502)
T PRK08276 395 IISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFE 474 (502)
T ss_pred EEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcEEEEe
Confidence 99999999999999999999999999999988877778899999987665444455668999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|+|++||++|++|++.+.
T Consensus 475 ~~lP~t~~GKi~r~~L~~~~~ 495 (502)
T PRK08276 475 DELPRTPTGKLYKRRLRDRYW 495 (502)
T ss_pred cCCCCCcccchhHHHHHHHHH
Confidence 999999999999999987654
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=292.94 Aligned_cols=233 Identities=18% Similarity=0.204 Sum_probs=198.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
++++||.+++|||++++++.+.+.+.+ +..+++.||+||++.++... .... .....++|+|+++ .++++|
T Consensus 273 ~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~-~~~~-------~~~~~~vG~~~~g-~~~i~d 342 (511)
T PRK13391 273 DLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTACD-SEEW-------LAHPGTVGRAMFG-DLHILD 342 (511)
T ss_pred CccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEec-Cccc-------cccCCCcCCcccc-eEEEEC
Confidence 478999999999999999999999987 57899999999998755431 1110 1134578999999 688888
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. .+..|||+++|+ +..||+++++.+...|.. .++||+|||+++++++|.+++.||.||+
T Consensus 343 ~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~--------------~~~w~~TGD~g~~~~~g~l~~~gR~~~~ 407 (511)
T PRK13391 343 DDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHP--------------DGTWSTVGDIGYVDEDGYLYLTDRAAFM 407 (511)
T ss_pred CCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhcc--------------CCCEEecCCEEEECCCccEEEeccCCCE
Confidence 7663 456799999999 888999999888877642 2489999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
+|++|++|+|.+||++|.+||.|.+++|++.++...+..+++++++.......+...+++++++++.+|.+++|..+..+
T Consensus 408 i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~ 487 (511)
T PRK13391 408 IISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFE 487 (511)
T ss_pred EEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEe
Confidence 99999999999999999999999999999988877777888888876654333445678999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++|+|++||++|+.|++.+.
T Consensus 488 ~~~P~t~~gKv~r~~l~~~~~ 508 (511)
T PRK13391 488 DELPRLPTGKLYKRLLRDRYW 508 (511)
T ss_pred ecCCCCCccceeHHHHHHHhh
Confidence 999999999999999987653
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=292.56 Aligned_cols=228 Identities=25% Similarity=0.402 Sum_probs=192.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
...+||.+++|||++++++++.+.+. ++++++.||+||++..+....... ......++|+|++++++++.+
T Consensus 252 ~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~-------~~~~~~~vG~p~~~~~~~i~~ 322 (483)
T PRK03640 252 YPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPED-------ALTKLGSAGKPLFPCELKIEK 322 (483)
T ss_pred cCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCccc-------ccccCCCcccccCCcEEEEec
Confidence 34699999999999999999988875 789999999999875443222111 112456899999999999987
Q ss_pred CCC--CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 96 SDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 96 ~~~--~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
+.. +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||+||++
T Consensus 323 ~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~~~~~tGDl~~~~~~g~l~~~GR~~~~i 386 (483)
T PRK03640 323 DGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF----------------QDGWFKTGDIGYLDEEGFLYVLDRRSDLI 386 (483)
T ss_pred CCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH----------------hcCCeeccceEEEcCCCCEEEeecccCeE
Confidence 632 345679999999999999999998887776 24699999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeC
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMD 253 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~ 253 (829)
|++|.+|+|.+||+.+.+++.|.+++++..+++..+..++++++..... ..+++++++++.|+.+++|..++.++
T Consensus 387 ~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~l~~~~~p~~i~~~~ 461 (483)
T PRK03640 387 ISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEV-----TEEELRHFCEEKLAKYKVPKRFYFVE 461 (483)
T ss_pred EeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCC-----CHHHHHHHHHHhccCCCCCcEEEEeC
Confidence 9999999999999999999999999999888776666777777754321 23578889999999999999999999
Q ss_pred cccCCCCCCcchhhhccccc
Q 003331 254 SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 254 ~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|+|++||++|++|++.+.
T Consensus 462 ~iP~t~~gK~~r~~l~~~~~ 481 (483)
T PRK03640 462 ELPRNASGKLLRHELKQLVE 481 (483)
T ss_pred CCCCCCccceeHHHHHHHHh
Confidence 99999999999999987653
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=296.87 Aligned_cols=230 Identities=21% Similarity=0.266 Sum_probs=196.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+++.+.+ ++.+++.||+||++.++...... ......++|+|++++.+++++
T Consensus 321 ~~~~lr~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~~~~~~i~~ 391 (563)
T PRK06710 321 DISSIRACISGSAPLPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSNFLW--------EKRVPGSIGVPWPDTEAMIMS 391 (563)
T ss_pred ChhhhhheeeCCCcCCHHHHHHHHHhh-CCCEecccccccCccccccCccc--------ccccCCccCCCCCCCeEEEEE
Confidence 468999999999999999999998877 68899999999998654321110 011345789999999999997
Q ss_pred CCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 96 SDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 96 ~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++. +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 392 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~----------------~~g~~~TGD~~~~~~~g~~~~~GR~dd 455 (563)
T PRK06710 392 LETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL----------------QDGWLHTGDVGYMDEDGFFYVKDRKKD 455 (563)
T ss_pred CCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc----------------ccCcccccceEEEcCCCcEEEeecccc
Confidence 433 356679999999999999999998887665 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|.||+|.+||++|.++|.|.+++|++.++...+..++++++..+..... .+++++++++.++.+++|..+++
T Consensus 456 ~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~ 532 (563)
T PRK06710 456 MIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS---EEELNQFARKYLAAYKVPKVYEF 532 (563)
T ss_pred EEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCCcEEEE
Confidence 999999999999999999999999999999988877777888888877653322 35788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhccccc
Q 003331 252 MDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++||+|++||++|++|++...
T Consensus 533 v~~iP~t~~GKi~r~~L~~~~~ 554 (563)
T PRK06710 533 RDELPKTTVGKILRRVLIEEEK 554 (563)
T ss_pred cccCCCCccchhhHHHHHHHHh
Confidence 9999999999999999987654
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=292.83 Aligned_cols=235 Identities=23% Similarity=0.310 Sum_probs=198.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+.+.+.+ +..+++.||+||++..++....... .........++|+|++++.++++
T Consensus 278 ~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~---~~~~~~~~~~~G~p~~g~~v~i~ 353 (524)
T PRK06188 278 RDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMVITYLRKRDH---DPDDPKRLTSCGRPTPGLRVALL 353 (524)
T ss_pred CCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCceeecCchhc---cccccccCCccccccCCcEEEEE
Confidence 4578999999999999999988888887 5679999999999765554322111 00112245679999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||++++..+...| ..+||+|||+++++++|.++++||.|+
T Consensus 354 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~~~~~GR~~~ 417 (524)
T PRK06188 354 DEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF----------------RDGWLHTGDVAREDEDGFYYIVDRKKD 417 (524)
T ss_pred cCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh----------------cCCceeecceEEEcCCccEEEEecccc
Confidence 87763 46679999999999999999988877666 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++++|.+++|++.++...+..+++++++....... .+++++++++.++.+++|..+++
T Consensus 418 ~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~ 494 (524)
T PRK06188 418 MIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAPKQVDF 494 (524)
T ss_pred ceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEE
Confidence 999999999999999999999999999999988776677888888887543322 36788999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++.+
T Consensus 495 v~~~P~t~~gKi~r~~L~~~~ 515 (524)
T PRK06188 495 VDSLPLTALGKPDKKALRARY 515 (524)
T ss_pred ecCCCCCccccccHHHHHHHH
Confidence 999999999999999998765
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=295.21 Aligned_cols=229 Identities=23% Similarity=0.279 Sum_probs=194.2
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.++++
T Consensus 326 ~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~vG~~~~~~~v~i~ 396 (560)
T PRK08751 326 IDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINPLTL--------KEYNGSIGLPIPSTDACIK 396 (560)
T ss_pred cchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceecccccc--------cccCCCcCccCCCceEEEE
Confidence 3467999999999999999999999877 688999999999987554322110 1134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.+++||+++++.+.+.|. .++||+|||+++++++|.++++||.||
T Consensus 397 d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGD~~~~~~~g~l~i~GR~~d 461 (560)
T PRK08751 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMD---------------ADGWLHTGDIARMDEQGFVYIVDRKKD 461 (560)
T ss_pred CCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccc---------------cCCCccccceEEEcCCceEEEEeechh
Confidence 87653 456799999999999999999998877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|..++.|.+++|++.++...++.++++++...... ..+++++++++.++.+++|..+++
T Consensus 462 ~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~P~~v~~ 537 (560)
T PRK08751 462 MILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPAL----TAEDVKAHARANLTGYKQPRIIEF 537 (560)
T ss_pred heeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCC----CHHHHHHHHHHhhhhccCCeEEEE
Confidence 9999999999999999999999999999999888766666777766543221 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++||++|++|++.
T Consensus 538 v~~lP~t~~gKv~r~~L~~~ 557 (560)
T PRK08751 538 RKELPKTNVGKILRRELRDA 557 (560)
T ss_pred hhhCCCCccccccHHHHHHh
Confidence 99999999999999999764
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=293.91 Aligned_cols=229 Identities=23% Similarity=0.280 Sum_probs=196.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.+++++|.++.||+++++.+.++|.+.+ ++++++.||+||++.+++..... ......++|.|++++.++++
T Consensus 324 ~~~~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~vG~p~~g~~v~i~ 394 (557)
T PRK07059 324 LDFSKLIVANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNPVD--------ATEFSGTIGLPLPSTEVSIR 394 (557)
T ss_pred CCchhheEEEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCCCC--------CCCcCCcccCccCCcEEEEE
Confidence 3567999999999999999999999887 78999999999998766543211 01234679999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.||
T Consensus 395 d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~~~~~GR~~~ 459 (557)
T PRK07059 395 DDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMT---------------ADGFFRTGDVGVMDERGYTKIVDRKKD 459 (557)
T ss_pred CCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcc---------------cCCceecCcEEEEcCCCcEEEeccccc
Confidence 8765 3466799999999999999999988877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++++|.+++|++.++...++.++++++...... ..+++++++++.++.+++|..+++
T Consensus 460 ~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~~----~~~~l~~~~~~~l~~~~~P~~i~~ 535 (557)
T PRK07059 460 MILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPAL----TEEDVKAFCKERLTNYKRPKFVEF 535 (557)
T ss_pred ceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCCC----CHHHHHHHHHHhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777778888887654322 235788889999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
++++|+|++||++|+.|++.
T Consensus 536 v~~~P~t~~GK~~r~~L~~~ 555 (557)
T PRK07059 536 RTELPKTNVGKILRRELRDG 555 (557)
T ss_pred eccCCCCcccceeHHHHHhh
Confidence 99999999999999999753
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=290.07 Aligned_cols=241 Identities=22% Similarity=0.327 Sum_probs=199.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++++.+.+.+++..+++.||+||++..+.. .... ......++|+|+++++++++
T Consensus 271 ~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~-~~~~-------~~~~~~~vG~~~~~~~~~i~ 342 (515)
T TIGR03098 271 SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYL-PPEE-------VDRRPDSIGKAIPNAEVLVL 342 (515)
T ss_pred CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEec-cccc-------ccCCCCCcceecCCCEEEEE
Confidence 467899999999999999999999999988899999999998753322 1100 11245689999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++++. .+..|||+++|+.++.||+++++.+...|...+... .....+.+||+|||+++++++|.+++.||.||
T Consensus 343 ~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d 418 (515)
T TIGR03098 343 REDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRP----GELHLPELAVWSGDTVRRDEEGFLYFVGRRDE 418 (515)
T ss_pred CCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcc----ccccccccceeccceEEEcCCceEEEEecccc
Confidence 87653 456799999999999999999998887775432100 00011346899999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|++|+|.+||++|.++|.|.+++|++.++...++.++++++....... ..+++++++++.++.+++|..+++
T Consensus 419 ~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~p~~i~~ 495 (515)
T TIGR03098 419 MIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEEL---DRAALLAECRARLPNYMVPALIHV 495 (515)
T ss_pred ceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCC---CHHHHHHHHHhhCccccCCCEEEE
Confidence 99999999999999999999999999999998887777888888876543322 235789999999999999999999
Q ss_pred eCcccCCCCCCcchhhhcc
Q 003331 252 MDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~ 270 (829)
+++||+|++||++|++|++
T Consensus 496 v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 496 RQALPRNANGKIDRKALAA 514 (515)
T ss_pred eccCCCCCCCCCcHHHhcc
Confidence 9999999999999999864
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=289.48 Aligned_cols=225 Identities=21% Similarity=0.315 Sum_probs=190.8
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
..+++|.++.|| +++.+.+.+.+.+ +++++|.||+||++..++... . .....++|.|+++++++|+|
T Consensus 292 ~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~-~---------~~~~~~vG~~~~~~~~~i~d 358 (542)
T PRK06155 292 RAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTETNFVIAVTH-G---------SQRPGSMGRLAPGFEARVVD 358 (542)
T ss_pred ccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccccCccccCCC-C---------CCCCCCcCccCCCceEEEEC
Confidence 356888877655 5788899998887 789999999999987654311 0 12456789999999999998
Q ss_pred CCCC---CCCCCeEEEccc---cccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 96 SDTV---KPDEGEIYAGGL---CLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~---~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+++. .+..|||+++|+ +++.||+++++.+.+.| .++||+|||+++++++|.++|+||.
T Consensus 359 ~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dG~l~i~GR~ 422 (542)
T PRK06155 359 EHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW----------------RNLWFHTGDRVVRDADGWFRFVDRI 422 (542)
T ss_pred CCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh----------------cCCcEeccceEEEcCCceEEEEecC
Confidence 7653 456799999998 79999999988887766 3579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||++|.++|+|.+++|++.++...+..+.+++++...... ...++++++++.++.+++|..+
T Consensus 423 ~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~l~~~~~P~~i 499 (542)
T PRK06155 423 KDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTAL---EPVALVRHCEPRLAYFAVPRYV 499 (542)
T ss_pred CCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCC---CHHHHHHHHHhhCcCccCCcEE
Confidence 9999999999999999999999999999999998887666778888887654332 2367899999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
++++++|+|++||++|++|++..
T Consensus 500 ~~~~~iP~t~~GKi~r~~l~~~~ 522 (542)
T PRK06155 500 EFVAALPKTENGKVQKFVLREQG 522 (542)
T ss_pred EEeccCCCCcccceeHHHHHhhc
Confidence 99999999999999999998754
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=291.45 Aligned_cols=236 Identities=22% Similarity=0.284 Sum_probs=192.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc-c-CCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE-M-STLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~-~-~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.++++|+++++.+++++.+.+ ++.+++.||+||++..++............ . ......++|+|++++.++
T Consensus 290 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~ 368 (539)
T PRK07008 290 LRFSTLRRTVIGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMK 368 (539)
T ss_pred CCcccceEEEEcCCCCCHHHHHHHHHHh-CCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEE
Confidence 4578999999999999999999998888 789999999999986554322110000000 0 001235789999999999
Q ss_pred EecCCCCCC-----CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTVKP-----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~~~-----~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
++|+++.+. ..|||+++|+.++.||++++. ..| .++||+|||+++++++|.++++|
T Consensus 369 i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~----------------~~g~~~TGD~~~~~~dg~l~~~G 429 (539)
T PRK07008 369 IVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL----------------VDGWFPTGDVATIDADGFMQITD 429 (539)
T ss_pred EECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh----------------cCCCcccCceEEEcCCCcEEEee
Confidence 998766321 359999999999999999872 222 14699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|++|+|.+||+++..+|.|.++++++.++...+..++++++..+.... ..++++++++++++.+++|.
T Consensus 430 R~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~ 506 (539)
T PRK07008 430 RSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEV---TREELLAFYEGKVAKWWIPD 506 (539)
T ss_pred cccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCcc---CHHHHHHHHHhhcccccCCe
Confidence 999999999999999999999999999999999998887666677778776654322 23679999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.++.+++||+|++||++|++|++.+.
T Consensus 507 ~i~~v~~lP~t~sgKi~r~~l~~~~~ 532 (539)
T PRK07008 507 DVVFVDAIPHTATGKLQKLKLREQFR 532 (539)
T ss_pred EEEEecCCCCCCccceeHHHHHHHHH
Confidence 99999999999999999999987654
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=300.69 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=185.2
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec-C
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-S 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~ 96 (829)
++||.+++||+++++.+ +++.+.++++.+++.||+||+++.++..... +.....++|+|+++++++|+| +
T Consensus 386 ~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~gsvG~p~pg~evki~d~~ 456 (666)
T PLN02614 386 GNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVSLPD--------ELDMLGTVGPPVPNVDIRLESVP 456 (666)
T ss_pred CcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeeeccc--------cCCcCCcccCcCCceEEEEeeec
Confidence 68999999999999875 6677777668999999999987544321110 011346899999999999987 2
Q ss_pred C-----CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 97 D-----TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 97 ~-----~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
+ .++++.|||+|+|++++.|||++|+.|++.|. ++||+|||+|++|+||+|+|+||+||
T Consensus 457 ~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~----------------dGw~~TGDlg~~d~dG~l~i~gR~kd 520 (666)
T PLN02614 457 EMEYDALASTPRGEICIRGKTLFSGYYKREDLTKEVLI----------------DGWLHTGDVGEWQPNGSMKIIDRKKN 520 (666)
T ss_pred ccCcccCCCCCCceEEEcCCcccccccCCHHHhhhhhc----------------cCCcccceEEEEcCCCCEEEEEcchh
Confidence 2 23467899999999999999999999998882 47999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-----------Cc------hHHHHHHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-----------TS------SEIFLSSIK 233 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------~~------~~~~~~~l~ 233 (829)
+||+ +|++|+|.|||++|.+||.|.+++|++.+... .++|+|++.... .. .+...+.+.
T Consensus 521 ~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~~~---~l~alvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 597 (666)
T PLN02614 521 IFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSFES---FLVAIANPNQQILERWAAENGVSGDYNALCQNEKAKEFIL 597 (666)
T ss_pred ceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCCcc---eEEEEEeCCHHHHHHHHHhcCCCcCHHHHhcCHHHHHHHH
Confidence 9997 79999999999999999999999999976432 588888875321 00 112233333
Q ss_pred HHH-----HhcCCCCCcCCeEEEeCc-c-----cCCCCCCcchhhhcccccccccccc
Q 003331 234 SWV-----SSKLPLAMIPNRFVFMDS-L-----PMTSSGKVDYASLSASTSFTISAQH 280 (829)
Q Consensus 234 ~~l-----~~~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~~~~ 280 (829)
+.+ ++.|+.+.+++.|+++++ | .+|+++|+.|+.+.+.|+..+...+
T Consensus 598 ~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly 655 (666)
T PLN02614 598 GELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY 655 (666)
T ss_pred HHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHH
Confidence 333 356999999999998874 3 4899999999999988765554433
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=287.34 Aligned_cols=231 Identities=20% Similarity=0.213 Sum_probs=195.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++++.+.+.+ ++.+++.||+||++.+++... .. ......++|.|++++.++++
T Consensus 268 ~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~~i~ 338 (509)
T PRK12406 268 YDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVTFATS-ED-------ALSHPGTVGKAAPGAELRFV 338 (509)
T ss_pred CCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceEecCc-cc-------ccccCCCcCccCCCcEEEEE
Confidence 3578999999999999999999999987 678999999999987554211 10 01134578999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccc-cccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSN-GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~-gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+++. .+..|||+++|+.+.. +|+++++.+...+ .++||+|||+++++++|.+++.||.|
T Consensus 339 d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~GR~~ 402 (509)
T PRK12406 339 DEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID----------------RGGFITSGDVGYLDADGYLFLCDRKR 402 (509)
T ss_pred CCCCCCCCCCCceEEEEECCccccccccCCchhccccc----------------CCCCeEEccEEEEcCCceEEEeeccc
Confidence 87663 4567999999998765 8999888776543 35799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||+.|.++|.|.++++++.++...+..+++++++...... ..+++++.+++.++.+++|..++
T Consensus 403 d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P~~i~ 479 (509)
T PRK12406 403 DMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL---DEADIRAQLKARLAGYKVPKHIE 479 (509)
T ss_pred ceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEE
Confidence 999999999999999999999999999999998887666778888887654321 23678899999999999999999
Q ss_pred EeCcccCCCCCCcchhhhccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++|+|++||++|++|++.+.
T Consensus 480 ~~~~iP~t~~GK~~r~~L~~~~~ 502 (509)
T PRK12406 480 IMAELPREDSGKIFKRRLRDPYW 502 (509)
T ss_pred EeccCCCCCccchhHHHHHHHHH
Confidence 99999999999999999986543
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=298.20 Aligned_cols=253 Identities=19% Similarity=0.224 Sum_probs=184.9
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCCc-------cc-----------
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPS-------IL----------- 72 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~~-------~~----------- 72 (829)
++++|| +++||+++++++.+++.+.+ |...+++.||+||++..++.......+. ..
T Consensus 316 ~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (612)
T PRK12476 316 DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAAD 394 (612)
T ss_pred chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCC
Confidence 578999 99999999999999999876 2346999999999876554322110000 00
Q ss_pred ccCCCCccccccccCCcEEEEecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccC--c-CCCCC
Q 003331 73 EMSTLKSVPIGLPISNCDIVLVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNC--S-VSCGS 145 (829)
Q Consensus 73 ~~~~~~~~~~G~p~~~~~~~i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~--~-~~~~~ 145 (829)
........++|+|+++++++|+|++ + +.++.|||+++|+.++.||+++|+.|.+.|...+.....+. . ....+
T Consensus 395 ~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~ 474 (612)
T PRK12476 395 APNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADD 474 (612)
T ss_pred CCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCC
Confidence 0001123578999999999999876 4 34667999999999999999999999998863211000000 0 00113
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeE--EEEEEeecCCceEEEEEEEEecCCC
Q 003331 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVD--TAVVSHKHQGELVILVAFIVLKEKK 222 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~--~~v~~~~~~~~~~~~~~~v~~~~~~ 222 (829)
++||+|||+|++ .+|.|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|++.+++. ++.+++++++..+.
T Consensus 475 ~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~ 552 (612)
T PRK12476 475 GTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGT 552 (612)
T ss_pred CCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCc
Confidence 579999999987 599999999999999999999999999999985 899998 6667777665 56788888877543
Q ss_pred CchHHHHHHHHHHHHhcCC-CCCc-CCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 223 TSSEIFLSSIKSWVSSKLP-LAMI-PNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~-~~~~-p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
.. ...++|.+++++.++ .+++ |..+++++ +||+|++|||+|++|++.+.
T Consensus 553 ~~--~~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~ 605 (612)
T PRK12476 553 SR--ADPAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYL 605 (612)
T ss_pred cc--ccHHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHH
Confidence 21 112344445555544 3566 57777776 69999999999999997653
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=297.84 Aligned_cols=236 Identities=20% Similarity=0.306 Sum_probs=186.3
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec-C
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE-S 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~ 96 (829)
++||.+++||+++++++.+.+...+ ++.+++.||+||+++.++..... .....++|.|+++++++|+| +
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~~YG~TEt~~~~~~~~~~---------~~~~gsvG~p~p~~evkivd~~ 489 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICL-GAPIGQGYGLTETCAGATFSEWD---------DTSVGRVGPPLPCCYVKLVSWE 489 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeEeechhhcccceeecCcc---------cCCCCccCCCCCceEEEEeecc
Confidence 6899999999999999988777666 78999999999998766543211 12446799999999999998 3
Q ss_pred CC------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 97 DT------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 97 ~~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
++ .+++.|||+|+|++++.||+++|+.|.+.|.... ++.+||+|||+|++++||+|+|+||+|
T Consensus 490 ~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~-----------~G~~W~~TGDig~~d~dG~l~i~gR~k 558 (696)
T PLN02387 490 EGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDE-----------RGMRWFYTGDIGQFHPDGCLEIIDRKK 558 (696)
T ss_pred ccCcccCCCCCCCceEEeccCcccchhcCCHHHHhhhhcccc-----------CCCceeecCceEEECCCCcEEEEEccc
Confidence 33 2345799999999999999999999999885321 134699999999999999999999999
Q ss_pred CcEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------------Cc------hHHHHHH
Q 003331 171 RTIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------------TS------SEIFLSS 231 (829)
Q Consensus 171 d~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------~~------~~~~~~~ 231 (829)
|+||+ +|++|+|.+||++|.+||.|.+++|++.+.. ..++|+|++.... .. .+...++
T Consensus 559 d~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~~---~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (696)
T PLN02387 559 DIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPFH---SYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKE 635 (696)
T ss_pred ceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCCc---ceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHH
Confidence 99998 6999999999999999999999999987633 2577888875321 00 1122233
Q ss_pred HHHHH-----HhcCCCCCcCCeEEEeCccc------CCCCCCcchhhhccccccccc
Q 003331 232 IKSWV-----SSKLPLAMIPNRFVFMDSLP------MTSSGKVDYASLSASTSFTIS 277 (829)
Q Consensus 232 l~~~l-----~~~l~~~~~p~~~~~~~~lP------~t~~GKi~r~~l~~~~~~~~~ 277 (829)
+.+.+ +..|+.+.+|..|.++.+-. +|++.|+.|+.+.+.|+..+.
T Consensus 636 i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~ 692 (696)
T PLN02387 636 VQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLK 692 (696)
T ss_pred HHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHH
Confidence 33333 34699999999999987643 688889999999988765543
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-30 Score=284.06 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=184.9
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
..+||.+++||+++++.+.+.+.+. +.++++.||+||++..++.... ....++|+|++++.+++++
T Consensus 239 ~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~~-----------~~~~~~G~~~~~~~~~i~~- 304 (458)
T PRK09029 239 PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKRA-----------DGLAGVGSPLPGREVKLVD- 304 (458)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccCC-----------CCCCCCCCCCCCCEEEEeC-
Confidence 4589999999999999999988764 7899999999999864432211 0224589999999999985
Q ss_pred CCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEEC
Q 003331 97 DTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKIN 176 (829)
Q Consensus 97 ~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~ 176 (829)
|||+++|+.++.||+++++.+...+ .++||+|||+|+++ +|.++++||.||+||++
T Consensus 305 -------gel~v~g~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~ 360 (458)
T PRK09029 305 -------GEIWLRGASLALGYWRQGQLVPLVN----------------DEGWFATRDRGEWQ-NGELTILGRLDNLFFSG 360 (458)
T ss_pred -------CEEEEecCceeeeeecCcccccccc----------------CCCccCCCCcEEEe-CCEEEEecccccceeeC
Confidence 8999999999999999887764221 46899999999999 99999999999999999
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCccc
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLP 256 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP 256 (829)
|++|+|.|||++|.++|.|.+++|++.++...++.++++++.... ...++|+++++++||.|++|..++.++++|
T Consensus 361 G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~-----~~~~~l~~~~~~~l~~~~~P~~~~~~~~~p 435 (458)
T PRK09029 361 GEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSE-----AAVVNLAEWLQDKLARFQQPVAYYLLPPEL 435 (458)
T ss_pred CEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcc-----cCHHHHHHHHHhhchhccCCeEEEEecccc
Confidence 999999999999999999999999999888777788888876632 234689999999999999999999999999
Q ss_pred CCCCCCcchhhhccccc
Q 003331 257 MTSSGKVDYASLSASTS 273 (829)
Q Consensus 257 ~t~~GKi~r~~l~~~~~ 273 (829)
+|++||++|+.|+++..
T Consensus 436 ~t~~gKi~r~~L~~~~~ 452 (458)
T PRK09029 436 KNGGIKISRQALKEWVA 452 (458)
T ss_pred cCcCCCcCHHHHHHHHH
Confidence 99999999999987654
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=286.83 Aligned_cols=230 Identities=26% Similarity=0.370 Sum_probs=196.9
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+.++|.+++||+++++++.+.|.+.+ ++++++.||+||++..++.... ......++|+|++++.++++|
T Consensus 276 ~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~---------~~~~~~~~G~~~~g~~v~i~d 345 (508)
T TIGR02262 276 DQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIGSTEMLHIFLSNLP---------GDVRYGTSGKPVPGYRLRLVG 345 (508)
T ss_pred ccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCccccccCceeecCCc---------cCCCCCCcCCCCCCcEEEEEC
Confidence 456899999999999999999999988 6899999999999865442111 112345789999999999998
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +++..|||+++|+.++.||+++++.+...| ..+||+|||+++++++|.++++||.||+
T Consensus 346 ~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~----------------~~~~~~TGD~~~~~~~g~~~~~gR~~d~ 409 (508)
T TIGR02262 346 DGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF----------------QGEWTRSGDKYVRNDDGSYTYAGRTDDM 409 (508)
T ss_pred CCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh----------------hcCceeccceEEEcCCccEEEeccccce
Confidence 665 345679999999999999999998887766 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|.+|+|.+||+.|.++++|.++++++.++......+.+++++.......+...+++++.++++|+.+++|..++.+
T Consensus 410 i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~ 489 (508)
T TIGR02262 410 LKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFV 489 (508)
T ss_pred eeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEe
Confidence 99999999999999999999999999999987766666778888877654433445678999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccc
Q 003331 253 DSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~ 271 (829)
+++|+|++||++|++|+++
T Consensus 490 ~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 490 DDLPKTATGKIQRFKLREG 508 (508)
T ss_pred cCCCCCCCCcEehhhccCC
Confidence 9999999999999998753
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=288.53 Aligned_cols=229 Identities=26% Similarity=0.294 Sum_probs=195.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++.+.+.|.+.+ ++.+++.||+||++..++...... .....++|.|++++.++++
T Consensus 322 ~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~i~ 392 (560)
T PRK08974 322 LDFSSLKLSVGGGMAVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNPYDL--------DYYSGSIGLPVPSTEIKLV 392 (560)
T ss_pred CCccceeEEEecCccCCHHHHHHHHHHh-CCcEEeeecccccCceeeccCCCC--------cccCCccccCcCCCEEEEE
Confidence 3467999999999999999999998876 789999999999987665432211 1234579999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...| .++||+|||+++++++|.++++||.||
T Consensus 393 ~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGDl~~~~~~g~l~i~GR~~d 456 (560)
T PRK08974 393 DDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI----------------KDGWLATGDIAVMDEEGFLRIVDRKKD 456 (560)
T ss_pred CCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh----------------hcCCcccCCEEEEcCCceEEEEecccc
Confidence 8765 345679999999999999999998887766 247999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+|+++|.+|+|.+||++|.++|.|.+++|++.++...+..++++++...... ..+++++++.+.++.+++|..++.
T Consensus 457 ~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~----~~~~l~~~l~~~l~~~~~P~~~~~ 532 (560)
T PRK08974 457 MILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSL----TEEELITHCRRHLTGYKVPKLVEF 532 (560)
T ss_pred eEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCC----CHHHHHHHHHhhcccccCCcEEEE
Confidence 9999999999999999999999999999999888777777777776543221 235788899999999999999999
Q ss_pred eCcccCCCCCCcchhhhcccc
Q 003331 252 MDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~~ 272 (829)
+++||+|++||++|++|++..
T Consensus 533 ~~~lP~t~~GK~~r~~l~~~~ 553 (560)
T PRK08974 533 RDELPKSNVGKILRRELRDEA 553 (560)
T ss_pred hhhCCCCCCCcEeHHHHHHHH
Confidence 999999999999999998643
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=285.86 Aligned_cols=225 Identities=21% Similarity=0.264 Sum_probs=191.5
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+.+|+.++++ +++++...+.+.+.+ ++++++.||+||++..++..... ......++|.|+++++++++|+
T Consensus 287 ~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~~~~g~~~~i~d~ 356 (517)
T PRK08008 287 QHCLREVMFY-LNLSDQEKDAFEERF-GVRLLTSYGMTETIVGIIGDRPG--------DKRRWPSIGRPGFCYEAEIRDD 356 (517)
T ss_pred cccceeeEEe-cCCCHHHHHHHHHHh-CCeEEeeccccccccccccCCcc--------ccccCCccccCCCCcEEEEECC
Confidence 4578888775 578999999988887 78999999999998655432211 1123457999999999999987
Q ss_pred CC---CCCCCCeEEEcc---ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 97 DT---VKPDEGEIYAGG---LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 97 ~~---~~~~~Gel~i~g---~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
++ +.+..|||+++| +++++||+++++.+.+.|. .++||+|||+++++++|.++++||.|
T Consensus 357 ~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~~~~~GR~~ 421 (517)
T PRK08008 357 HNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLE---------------ADGWLHTGDTGYVDEEGFFYFVDRRC 421 (517)
T ss_pred CCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhccc---------------CCCCeeccceEEECCCCcEEEeeccc
Confidence 76 345679999997 6899999999999888774 25799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFV 250 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~ 250 (829)
|+||++|++|+|.+||+++.+++.|.+++|++.++...+..+.++++++...... .+++++++++.++.+++|..++
T Consensus 422 d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~ 498 (517)
T PRK08008 422 NMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLS---EEEFFAFCEQNMAKFKVPSYLE 498 (517)
T ss_pred ceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCcEEE
Confidence 9999999999999999999999999999999998877777888999887653322 3578999999999999999999
Q ss_pred EeCcccCCCCCCcchhhhc
Q 003331 251 FMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++|+|++||++|+.|+
T Consensus 499 ~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 499 IRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EeccCCCCCccceehhhcC
Confidence 9999999999999999874
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=285.20 Aligned_cols=223 Identities=22% Similarity=0.322 Sum_probs=189.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||+++++++++|.+.+ +..+++.||+||++..+.... .. ......++|+|+++++++|+|
T Consensus 290 ~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~~-~~-------~~~~~~~~G~~~~~~~~~i~d 360 (516)
T PRK13383 290 PLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALATP-AD-------LRDAPETVGKPVAGCPVRILD 360 (516)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceeccc-cc-------cccCCCcccCCCCCcEEEEEC
Confidence 468999999999999999999999988 678999999999985543211 10 011345789999999999998
Q ss_pred CCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++. +++.|||+++|+.++.||++++.. .+ .++||+|||+++++++|+++++||.||+
T Consensus 361 ~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~---~~----------------~~g~~~TGDl~~~d~~G~l~i~GR~~~~ 421 (516)
T PRK13383 361 RNNRPVGPRVTGRIFVGGELAGTRYTDGGGK---AV----------------VDGMTSTGDMGYLDNAGRLFIVGREDDM 421 (516)
T ss_pred CCCCCCCCCCceEEEEecCcccccccCCchh---he----------------ecCceecceeEEEcCCccEEEeccccce
Confidence 7663 456799999999999999986531 11 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|++|+|.+||++|.++|.|.++++++.++...+..+.+++++...... ..++++++++++++.+++|..++.+
T Consensus 422 i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~~i~~v 498 (516)
T PRK13383 422 IISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGV---DAAQLRDYLKDRVSRFEQPRDINIV 498 (516)
T ss_pred EEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCC---CHHHHHHHHHHhcccCCCCcEEEEe
Confidence 9999999999999999999999999999998887777788888887754322 2357899999999999999999999
Q ss_pred CcccCCCCCCcchhhhc
Q 003331 253 DSLPMTSSGKVDYASLS 269 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~ 269 (829)
++||+|++||++|++|+
T Consensus 499 ~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 499 SSIPRNPTGKVLRKELP 515 (516)
T ss_pred CCCCCCCCCcCcHHHhC
Confidence 99999999999999874
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=289.06 Aligned_cols=238 Identities=22% Similarity=0.357 Sum_probs=184.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccC----CCcccc-cCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKR----LPSILE-MSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~----~~~~~~-~~~~~~~~~G~p~~~~~ 90 (829)
..++++.+++||+++++.+.+.+.+ + +.++++.||+||+++.++...... .+.... .........+.|+++++
T Consensus 298 ~~~~~~~~~~gg~~~~~~~~~~~~~-~-g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~ 375 (579)
T PLN03102 298 PRSGPVHVLTGGSPPPAALVKKVQR-L-GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVD 375 (579)
T ss_pred CcccceEEEECCCCCCHHHHHHHHH-c-CCeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccceE
Confidence 3457889999999999999988876 4 789999999999986443221110 000000 00001122234444444
Q ss_pred EEEecCCC----CC--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 003331 91 IVLVESDT----VK--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 164 (829)
Q Consensus 91 ~~i~d~~~----~~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 164 (829)
+++.+. +. +..|||+++|+.++.||+++|+.+.+.| .++||+|||+|+++++|.++
T Consensus 376 --i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f----------------~~gw~~TGDlg~~d~dG~l~ 437 (579)
T PLN03102 376 --VKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF----------------KHGWLNTGDVGVIHPDGHVE 437 (579)
T ss_pred --EeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh----------------ccCceecCceEEEcCCCeEE
Confidence 444322 11 2469999999999999999999888877 24799999999999999999
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchH-------HHHHHHHHHHH
Q 003331 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSE-------IFLSSIKSWVS 237 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~l~~~l~ 237 (829)
|+||.||+||++|++|+|.+||++|.+||.|.+++|++.+++..+..+++++++..+....+ ....+++++++
T Consensus 438 i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 517 (579)
T PLN03102 438 IKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCR 517 (579)
T ss_pred EEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877778899998875432110 12457999999
Q ss_pred hcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 238 SKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 238 ~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++||.|++|..++++++||+|++||++|++|++.+.
T Consensus 518 ~~L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~ 553 (579)
T PLN03102 518 ENLPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAK 553 (579)
T ss_pred hhcccccCCeEEEEcccCCCCCcccccHHHHHHHHH
Confidence 999999999999999999999999999999987654
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-30 Score=290.40 Aligned_cols=234 Identities=24% Similarity=0.326 Sum_probs=194.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+.+.+. ++++++.||+||++..+....... ......++|.|++++.++++
T Consensus 299 ~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 369 (547)
T PRK06087 299 ADLSALRFFLCGGTTIPKKVARECQQR--GIKLLSVYGSTESSPHAVVNLDDP-------LSRFMHTDGYAAAGVEIKVV 369 (547)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEEEecccccCCccccCCCcc-------hhhcCCcCCccCCCceEEEE
Confidence 457899999999999999999888765 789999999999986554321100 01123468999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.+..|||+++|+.++.||+++++.+...|. .++||+|||+++++++|.++++||.||
T Consensus 370 d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~---------------~~g~~~TGDl~~~~~~g~l~i~GR~~d 434 (547)
T PRK06087 370 DEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALD---------------EEGWYYSGDLCRMDEAGYIKITGRKKD 434 (547)
T ss_pred cCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhC---------------CCCCcCcCceEEECCCCCEEEEecchh
Confidence 8766 3456799999999999999999988877663 257999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHH-hcCCCCCcCCeEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVS-SKLPLAMIPNRFV 250 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~-~~l~~~~~p~~~~ 250 (829)
+||++|++|+|.+||++|.++|.|.++++++.++...++.+++++++...... ...+++.+++. +.++.+++|..+.
T Consensus 435 ~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~l~~~~~P~~i~ 512 (547)
T PRK06087 435 IIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHS--LTLEEVVAFFSRKRVAKYKYPEHIV 512 (547)
T ss_pred hhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCC--CCHHHHHHHHHhccccccCCCeEEE
Confidence 99999999999999999999999999999998887777788888887653211 12356777664 5799999999999
Q ss_pred EeCcccCCCCCCcchhhhcccccc
Q 003331 251 FMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 251 ~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++||+|++||++|++|++....
T Consensus 513 ~v~~iP~t~sGK~~r~~l~~~~~~ 536 (547)
T PRK06087 513 VIDKLPRTASGKIQKFLLRKDIMR 536 (547)
T ss_pred EeccCCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999999876543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=313.35 Aligned_cols=229 Identities=18% Similarity=0.207 Sum_probs=188.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+.+.+.+ +++++|.||+||++..++.... ......++|+|++++++++
T Consensus 903 ~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~vG~p~~g~~~~~ 972 (1140)
T PRK06814 903 PYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTETAPVIALNTP---------MHNKAGTVGRLLPGIEYRL 972 (1140)
T ss_pred cccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEeccccccccceEEecCC---------CCCCCCcCCccCCCCeEEE
Confidence 45678999999999999999999999887 7899999999999876553211 0124568999999999999
Q ss_pred ecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 94 VESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 94 ~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+.++ .++.|||+++|+.++.||+++++... +.. ..++||+|||++++++||.++++||.||+|
T Consensus 973 ~~~~~-~~~~Gel~v~g~~~~~gY~~~~~~~~--~~~-------------~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i 1036 (1140)
T PRK06814 973 EPVPG-IDEGGRLFVRGPNVMLGYLRAENPGV--LEP-------------PADGWYDTGDIVTIDEEGFITIKGRAKRFA 1036 (1140)
T ss_pred eecCC-CCCceEEEEeCCCcchhhcCCCCCCc--ccc-------------CCCCeEecCCEEEECCCCeEEEEecccCee
Confidence 86442 45679999999999999998764221 110 146899999999999999999999999999
Q ss_pred EECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeEEEe
Q 003331 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRFVFM 252 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~~~~ 252 (829)
|++|+||+|.|||++|.+|+.+.+++|++.+++..++.+++++... . ...+++++++++ .++.+++|..++.+
T Consensus 1037 ~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~---~---~~~~~l~~~~~~~~l~~~~~P~~i~~v 1110 (1140)
T PRK06814 1037 KIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTAS---D---ATRAAFLAHAKAAGASELMVPAEIITI 1110 (1140)
T ss_pred eeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCC---C---cCHHHHHHHHHHcCCCcccCCcEEEEe
Confidence 9999999999999999999999999999988877777776665421 1 123567777876 49999999999999
Q ss_pred CcccCCCCCCcchhhhcccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++|+|++||+||++|++....
T Consensus 1111 ~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814 1111 DEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred cCcCCCCCCCCcHHHHHHHHHH
Confidence 9999999999999999876543
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=296.39 Aligned_cols=235 Identities=20% Similarity=0.231 Sum_probs=183.8
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC-
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES- 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~- 96 (829)
.+||.+++||+++++++. +|.+.++...+++.||+||+++.++...... .....++|+|+++++++++|.
T Consensus 383 ~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~--------~~~~gsvG~p~p~~ev~i~d~~ 453 (660)
T PLN02861 383 GRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSIANV--------FSMVGTVGVPMTTIEARLESVP 453 (660)
T ss_pred CcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeeccccc--------CCCCCCccCccCceEEEEEEcc
Confidence 589999999999999975 4666664557999999999986554321110 113468999999999999872
Q ss_pred -CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 97 -DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 97 -~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
++ ..++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|++|+||.|+|+||+||
T Consensus 454 ~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~----------------dGw~~TGDlg~~d~dG~l~i~GR~kd 517 (660)
T PLN02861 454 EMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEEVLI----------------DGWFHTGDIGEWQPNGAMKIIDRKKN 517 (660)
T ss_pred ccCcccCCCCCceeEEEcCCcccccccCCHHHHHhhhh----------------ccCcccCceEEECCCCcEEEEecccc
Confidence 12 2345799999999999999999999998882 57999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC-----------CchH------HHHHHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK-----------TSSE------IFLSSIK 233 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~-----------~~~~------~~~~~l~ 233 (829)
+||+ +|++|+|.+||++|.+||.|.+|+|++.+.. ..++|+|++.... .... .....+.
T Consensus 518 ~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~~~---~~~~A~vv~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (660)
T PLN02861 518 IFKLSQGEYVAVENLENTYSRCPLIASIWVYGNSFE---SFLVAVVVPDRQALEDWAANNNKTGDFKSLCKNLKARKYIL 594 (660)
T ss_pred ceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecCCc---ceeEEEEEcCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHH
Confidence 9998 7999999999999999999999999987632 4688888875320 0111 1222333
Q ss_pred HHHHh-----cCCCCCcCCeEEEeC-cc-----cCCCCCCcchhhhcccccccccccc
Q 003331 234 SWVSS-----KLPLAMIPNRFVFMD-SL-----PMTSSGKVDYASLSASTSFTISAQH 280 (829)
Q Consensus 234 ~~l~~-----~l~~~~~p~~~~~~~-~l-----P~t~~GKi~r~~l~~~~~~~~~~~~ 280 (829)
+.+.+ .++.+..+..+.+.+ .| ++|+++|+.|+.+.+.|+..++..+
T Consensus 595 ~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY 652 (660)
T PLN02861 595 DELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY 652 (660)
T ss_pred HHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHH
Confidence 44432 488999999998865 46 7999999999999988876554443
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=288.85 Aligned_cols=237 Identities=26% Similarity=0.360 Sum_probs=200.6
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++++.+.+.+ ++++++.||+||++..++....... .........++|.|++++.++|
T Consensus 277 ~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i 352 (521)
T PRK06187 277 FVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMTETSPVVSVLPPEDQ---LPGQWTKRRSAGRPLPGVEARI 352 (521)
T ss_pred ccCcchhhEEEEcCcCCCHHHHHHHHHHh-CcchheeeccCccCcccccCCcccc---cccccccCCccccccCCeEEEE
Confidence 35678999999999999999999999988 8899999999999866554321110 0000124568999999999999
Q ss_pred ecCCCC---C--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 94 VESDTV---K--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 94 ~d~~~~---~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+++. . +..|||++.|+.++.||+++++.+.+.|. .+||+|||+++++++|.+++.||
T Consensus 353 ~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~----------------~~~~~tGD~~~~~~~g~~~~~GR 416 (521)
T PRK06187 353 VDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETID----------------GGWLHTGDVGYIDEDGYLYITDR 416 (521)
T ss_pred ECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhh----------------CCceeccceEEEcCCCCEEEeec
Confidence 987763 3 56799999999999999999887777663 35999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|.+|+|.+||+.|.++++|.+++|++.+++..+..+++++++....... ..++++++++.++.+++|..
T Consensus 417 ~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~ 493 (521)
T PRK06187 417 IKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLD---AKELRAFLRGRLAKFKLPKR 493 (521)
T ss_pred ccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCceE
Confidence 999999999999999999999999999999999988776677888888876554322 35788899999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++++||+|++||++|.+|++++.
T Consensus 494 i~~v~~~P~t~~gK~~r~~l~~~~~ 518 (521)
T PRK06187 494 IAFVDELPRTSVGKILKRVLREQYA 518 (521)
T ss_pred EEEccCCCCCCCCCeeHHHHHHHHh
Confidence 9999999999999999999988764
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=283.34 Aligned_cols=222 Identities=21% Similarity=0.262 Sum_probs=182.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
.++||. ++||+++++.+ +++.+.+ ++++++.||+||++..++... .....++|.|+++ ++++++
T Consensus 266 ~~~lr~-~~gg~~~~~~~-~~~~~~~-g~~l~~~YG~TE~~~~~~~~~-----------~~~~~~~g~~~~~--~~i~~~ 329 (529)
T PRK07867 266 DNPLRI-VYGNEGAPGDI-ARFARRF-GCVVVDGFGSTEGGVAITRTP-----------DTPPGALGPLPPG--VAIVDP 329 (529)
T ss_pred ccceEE-EecCCCChHHH-HHHHHHh-CCcEEEeecccccccccccCC-----------CCCCCCcCCCCCC--EEEEEC
Confidence 457884 56899888764 6677777 689999999999986544211 1133568999998 556653
Q ss_pred C-C---CCCC------------CCeEEE-ccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc
Q 003331 97 D-T---VKPD------------EGEIYA-GGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ 159 (829)
Q Consensus 97 ~-~---~~~~------------~Gel~i-~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~ 159 (829)
+ + +.+. .|||++ +|+.++.||+++++.+.+.| ..+||+|||++++++
T Consensus 330 ~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~----------------~~g~~~TGD~~~~~~ 393 (529)
T PRK07867 330 DTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERM----------------RGGVYWSGDLAYRDA 393 (529)
T ss_pred CCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhh----------------cCCeEeeccEEEEeC
Confidence 2 2 2344 799999 99999999999999887766 257999999999999
Q ss_pred CCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc
Q 003331 160 SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK 239 (829)
Q Consensus 160 ~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 239 (829)
+|.++++||.||+||++|+||+|.|||++|.++|.|.+++|++.+++..++.+++++++..+.... .++++++++++
T Consensus 394 ~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~ 470 (529)
T PRK07867 394 DGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD---PDAFAEFLAAQ 470 (529)
T ss_pred CCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC---HHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999888788888988887553322 35677777665
Q ss_pred --CCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 240 --LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 240 --l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.+++|..++++++||+|++||++|++|+++..
T Consensus 471 ~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~ 506 (529)
T PRK07867 471 PDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV 506 (529)
T ss_pred ccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcC
Confidence 9999999999999999999999999999987653
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=285.93 Aligned_cols=228 Identities=23% Similarity=0.316 Sum_probs=192.4
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+ +.++++.||+||++.+++...... .....++|.|++++.++++
T Consensus 309 ~~~~~l~~i~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~~~~~~~~~v~ 379 (541)
T TIGR03205 309 RDLSSLATIGSGGAPLPVEVANFFERKT-GLKLKSGWGMTETCSPGTGHPPEG--------PDKPGSIGLMLPGIELDVV 379 (541)
T ss_pred cCccccceEEEccccCCHHHHHHHHHHh-CCCeecccccccCCcccccCCCCC--------CCCCCCcceeccCceeEEE
Confidence 3567999999999999999999988877 689999999999987665432111 1134578999999998775
Q ss_pred --cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 95 --ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 95 --d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+++ +.++.|||+++|++++.||+++|+.+.+.|. .+||+|||+++++++|.++++||.
T Consensus 380 ~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~----------------~~~~~TGD~~~~~~~g~l~i~GR~ 443 (541)
T TIGR03205 380 SLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFV----------------GDRFLTGDIGYMDTDGYFFLVDRK 443 (541)
T ss_pred ecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhc----------------cCCcccCceEEEcCCceEEEEccc
Confidence 3332 3456799999999999999999998887773 358999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|++|+|.+||+++.+++.|.+++|++.+++..+..+++++++...... ...++++++++++|+.+++|..+
T Consensus 444 ~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~~~l~~~~~P~~i 521 (541)
T TIGR03205 444 KDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKP--FSLDELRAFLAGKLGKHELPVAV 521 (541)
T ss_pred cCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCc--CCHHHHHHHHHhhcccccCCcEE
Confidence 9999999999999999999999999999999998887667788888887754321 12357888999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhc
Q 003331 250 VFMDSLPMTSSGKVDYASLS 269 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~ 269 (829)
+++++||+|++||++|++|+
T Consensus 522 ~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 522 EFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred EEeccCCCCcccceeHhhcC
Confidence 99999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=258.24 Aligned_cols=286 Identities=22% Similarity=0.360 Sum_probs=228.5
Q ss_pred CCCcEEEEEEcCCcee-----eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc
Q 003331 504 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH 578 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~-----~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~ 578 (829)
.+++++|+++++.... .++.+ .++.+|+++.++.|+++|..||+++|++..+..+...|++. ++.+|+++.
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--~~~v~v~~~ 113 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAV--AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD--GGLVFVGTE 113 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEE--ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc--CCEEEEEcC
Confidence 4688999998876542 34444 35689999999999999999999999999888777777665 488999999
Q ss_pred CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCccee---eeeeeec
Q 003331 579 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA---SLCITSA 655 (829)
Q Consensus 579 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~---s~~~~~~ 655 (829)
++.++++|.++|+++|+....+...++|.+.+ +.+++++.+|.++++|.++ |+.+|+.+...+... ...+...
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~--~~v~v~~~~g~l~a~d~~t--G~~~W~~~~~~~~~~~~~~~sp~~~ 189 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLSSEVLSPPLVAN--GLVVVRTNDGRLTALDAAT--GERLWTYSRVTPALTLRGSASPVIA 189 (377)
T ss_pred CCEEEEEECCCCcEeeeeccCceeecCCEEEC--CEEEEECCCCeEEEEEcCC--CceeeEEccCCCceeecCCCCCEEE
Confidence 99999999999999999988887778888865 8999999999999999988 999999877554321 1112223
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 656 NRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
++.+++++.+|.++++| .+|+.+|+.....+ +.+.| ...++.+|+++.+|.++++|.++|+++|.
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p---~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP---VVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc---EEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 57899999899999999 89999998764322 11223 22467999999999999999999999998
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccceE
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPVM 802 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~ 802 (829)
.+... ...+. ..++.+|+++.+|.|+++|..+| +..|.. .+.+...++|++
T Consensus 267 ~~~~~--~~~p~-------------~~~~~vyv~~~~G~l~~~d~~tG-------------~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 267 RDASS--YQGPA-------------VDDNRLYVTDADGVVVALDRRSG-------------SELWKNDELKYRQLTAPAV 318 (377)
T ss_pred eccCC--ccCce-------------EeCCEEEEECCCCeEEEEECCCC-------------cEEEccccccCCccccCEE
Confidence 87432 12222 23789999999999999999876 444544 556667789999
Q ss_pred ECCEEEEeeeCCeEEEEecccccccc
Q 003331 803 IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 803 ~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.++.||+++.+|.||++|..+|++.+
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 99999999999999999999998754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=278.36 Aligned_cols=218 Identities=28% Similarity=0.420 Sum_probs=182.7
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++|||++++++.+.+.+. ++.+++.||+||++..++....... ....++|.|++++++++..++
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~--------~~~~~~G~~~~~~~~~i~~~~ 288 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEML--------HARPDVGRPLAGREIKIKVDN 288 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCcccc--------ccccCCCccCCCcEEEEEeCC
Confidence 689999999999999999988765 7899999999999876553322110 111248999999999984332
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
. ...|||++.|+.++.||+++++.+...| ..+||+|||+++++++|.+++.||.||+||++|
T Consensus 289 ~--~~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G 350 (436)
T TIGR01923 289 K--EGHGEIMVKGANLMKGYLYQGELTPAFE----------------QQGWFNTGDIGELDGEGFLYVLGRRDDLIISGG 350 (436)
T ss_pred C--CCceEEEEECCccchhhCCChhhhhhhh----------------cCCCeeccceEEEcCCCCEEEeccccCeEEeCC
Confidence 2 3679999999999999999877665443 357999999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003331 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
++|+|.+||++|.+++.|.+++++..++...+..+++++++... ...+++.+++++.++.+++|..++++++||+
T Consensus 351 ~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-----~~~~~l~~~l~~~l~~~~~p~~i~~~~~iP~ 425 (436)
T TIGR01923 351 ENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD-----ISQAKLIAYLTEKLAKYKVPIAFEKLDELPY 425 (436)
T ss_pred EeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC-----CCHHHHHHHHHHhhhCCCCCeEEEEecCCCC
Confidence 99999999999999999999999988776656677888877653 1235788889999999999999999999999
Q ss_pred CCCCCcchhhh
Q 003331 258 TSSGKVDYASL 268 (829)
Q Consensus 258 t~~GKi~r~~l 268 (829)
|++||++|++|
T Consensus 426 t~~GK~~r~~L 436 (436)
T TIGR01923 426 NASGKILRNQL 436 (436)
T ss_pred CCCCceecccC
Confidence 99999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=258.22 Aligned_cols=284 Identities=19% Similarity=0.346 Sum_probs=223.5
Q ss_pred CCCcEEEEEEcCCcee-----eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeee
Q 003331 504 KRSSVLWEIKLEGRIE-----CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVD 567 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~-----~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~ 567 (829)
.+++..|+.++++.+. .++++. ++.||+++.++.|+++|.+||+++|+++.... +...|++.
T Consensus 42 ~~~~~~W~~~~g~g~~~~~~~~sPvv~--~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~ 119 (394)
T PRK11138 42 FTPTTVWSTSVGDGVGDYYSRLHPAVA--YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA 119 (394)
T ss_pred CCcceeeEEEcCCCCccceeeeccEEE--CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE
Confidence 4577888888765431 244553 46899999999999999999999999876541 12234444
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++.||+++.++.++++|.+||+.+|+....+...++|++.+ +.+|+++.+|.++++|+++ |+.+|+++...+..
T Consensus 120 --~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~--~~v~v~~~~g~l~ald~~t--G~~~W~~~~~~~~~ 193 (394)
T PRK11138 120 --GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSD--GLVLVHTSNGMLQALNESD--GAVKWTVNLDVPSL 193 (394)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEEC--CEEEEECCCCEEEEEEccC--CCEeeeecCCCCcc
Confidence 48899999999999999999999999998888888898876 8999999999999999998 99999997654322
Q ss_pred -----eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeE
Q 003331 648 -----ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 648 -----~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
.++.+ .++.+++++.+|.++++| .+|+.+|+.+...+ +...|. ..++.+|+++.+|.+
T Consensus 194 ~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~---v~~~~vy~~~~~g~l 268 (394)
T PRK11138 194 TLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV---VVGGVVYALAYNGNL 268 (394)
T ss_pred cccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE---EECCEEEEEEcCCeE
Confidence 23333 467899999999999999 99999999765432 123342 347899999999999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 790 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 790 (829)
+++|.++|+.+|+.+..... .+ ...++.+|+++.+|.|+++|..+| +..|+.
T Consensus 269 ~ald~~tG~~~W~~~~~~~~--~~-------------~~~~~~vy~~~~~g~l~ald~~tG-------------~~~W~~ 320 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSVN--DF-------------AVDGGRIYLVDQNDRVYALDTRGG-------------VELWSQ 320 (394)
T ss_pred EEEECCCCCEEEeecCCCcc--Cc-------------EEECCEEEEEcCCCeEEEEECCCC-------------cEEEcc
Confidence 99999999999998754321 11 123789999999999999999876 334433
Q ss_pred -ccCCcccccceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 791 -ELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 791 -~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+.+...++|++.++.||+++.+|.|+++|..+|++.+
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 33455678899999999999999999999999998754
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=281.34 Aligned_cols=235 Identities=22% Similarity=0.287 Sum_probs=191.2
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccccc--CCCCccccccccCCcEEEE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM--STLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i 93 (829)
++++||.+++|||++++++.++|++ + ++.+++.||+||++.+++............. ......++|+|.+++++++
T Consensus 292 ~~~~lr~~~~~G~~l~~~~~~~~~~-~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v 369 (542)
T PRK06018 292 KLPHLKMVVCGGSAMPRSMIKAFED-M-GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKI 369 (542)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHH-h-CCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEE
Confidence 5689999999999999999999998 5 8899999999999876553221110000000 0012357899999999999
Q ss_pred ecCCCCCC-----CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 94 VESDTVKP-----DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 94 ~d~~~~~~-----~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
+|+++... ..|||+++|+.++.||++.. ...+ ..++||+|||+++++++|.++++||
T Consensus 370 ~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~---~~~~---------------~~~~~~~TGDl~~~~~~g~~~~~GR 431 (542)
T PRK06018 370 TDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVD---GEIL---------------DDDGFFDTGDVATIDAYGYMRITDR 431 (542)
T ss_pred ECCCCCCCCCCCCceeEEEEecCCcchhhhcCc---ccEe---------------cCCcEEEcCCEEEEcCCccEEEEec
Confidence 98776321 35999999999999999832 2211 1368999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||..+.++|.|.+|+|++.++...+..+.+++++.++... ..++++++++++++.+++|..
T Consensus 432 ~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~~ 508 (542)
T PRK06018 432 SKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETA---TREEILKYMDGKIAKWWMPDD 508 (542)
T ss_pred CCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCC---CHHHHHHHHHhhCccccCCcE
Confidence 99999999999999999999999999999999998887666778888887655432 235788899999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++++||+|++||++|++|++.+.
T Consensus 509 i~~v~~iP~t~~GKi~r~~L~~~~~ 533 (542)
T PRK06018 509 VAFVDAIPHTATGKILKTALREQFK 533 (542)
T ss_pred EEEeccCCCCCcchhhHHHHHHHHh
Confidence 9999999999999999999987654
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-29 Score=281.39 Aligned_cols=223 Identities=20% Similarity=0.254 Sum_probs=180.6
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE-----
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV----- 92 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~----- 92 (829)
++++.+ .|+++++.....+.+.+ +.+++|.||+||++..++... .....++|+|+++++++
T Consensus 265 ~~l~~~--~G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~~-----------~~~~~~vG~p~~g~~i~~~~~~ 330 (540)
T PRK13388 265 NPLRVA--FGNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVREP-----------GTPPGSIGRGAPGVAIYNPETL 330 (540)
T ss_pred cceEEE--ECCCCCHHHHHHHHHHh-CCceecccccccccceeecCC-----------CCCCCCCCCCCCCcEEEcCCCC
Confidence 456643 36667888888888887 689999999999986554211 11345789999997653
Q ss_pred ------EecCCCC----CCCCCeEEEc-cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC
Q 003331 93 ------LVESDTV----KPDEGEIYAG-GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 161 (829)
Q Consensus 93 ------i~d~~~~----~~~~Gel~i~-g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G 161 (829)
++|+++. .+..|||++. |++++.||+++|+.+.+.| .++||+|||+++++++|
T Consensus 331 ~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~----------------~~g~~~TGD~~~~~~dg 394 (540)
T PRK13388 331 TECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERM----------------RHGMYWSGDLAYRDADG 394 (540)
T ss_pred ccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHh----------------hcCceeccceEEEcCCC
Confidence 2233221 2357999998 9999999999999888776 24699999999999999
Q ss_pred cEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh--c
Q 003331 162 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS--K 239 (829)
Q Consensus 162 ~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~--~ 239 (829)
.++++||.||+||++|++|+|.+||++|.++|.|.+|+|++.++...+..+++++++..+.... .++++++++. .
T Consensus 395 ~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~l~~~~~ 471 (540)
T PRK13388 395 WIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---PDAFAAFLAAQPD 471 (540)
T ss_pred cEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC---HHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999998876667777888776543222 2467777765 4
Q ss_pred CCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 240 l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.+++|..++++++||+|++||++|++|++...
T Consensus 472 l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~ 505 (540)
T PRK13388 472 LGTKAWPRYVRIAADLPSTATNKVLKRELIAQGW 505 (540)
T ss_pred CCcccCCcEEEEeccCCCCCcceeeHHhHHHhcc
Confidence 9999999999999999999999999999987654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-29 Score=281.42 Aligned_cols=234 Identities=20% Similarity=0.292 Sum_probs=189.7
Q ss_pred CCCCCCCccEEEEec-CCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcE
Q 003331 13 NMHVPSSLKLLVLSG-EVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCD 90 (829)
Q Consensus 13 ~~~~~~~lr~i~~gG-e~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~ 90 (829)
....++++|.+.++| .+.+..+.+++.+. ++++++.||+||++..++...... .......+.|.|+ +++.
T Consensus 289 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~ 360 (540)
T PRK06164 289 ERADFPSARLFGFASFAPALGELAALARAR--GVPLTGLYGSSEVQALVALQPATD------PVSVRIEGGGRPASPEAR 360 (540)
T ss_pred ccCCCcceeeeeeccCCcchHHHHHHHhhc--CCceecceeeccccceeeccCCCC------CCcceeccCccccCCCeE
Confidence 345688999887776 45556666666654 789999999999987665432211 0111334567775 7899
Q ss_pred EEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 91 IVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++++|++. +.++.|||+|+|++++.||+++|+.+...|.. ++||+|||+|+++++|.+++.
T Consensus 361 ~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~---------------~~~~~TGDl~~~~~~g~l~~~ 425 (540)
T PRK06164 361 VRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTD---------------DGYFRTGDLGYTRGDGQFVYQ 425 (540)
T ss_pred EEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccC---------------CCceecCCeEEEcCCceEEEE
Confidence 99998543 45667999999999999999999998887742 579999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|++|+|.+||++|.++|.|.+++|++.+.. ....+++++++.+.... ..+++++++++.+|.+++|
T Consensus 426 GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~vv~~~~~~~---~~~~l~~~~~~~l~~~~~P 501 (540)
T PRK06164 426 TRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD-GKTVPVAFVIPTDGASP---DEAGLMAACREALAGFKVP 501 (540)
T ss_pred eecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCC-CceeEEEEEEeCCCCCC---CHHHHHHHHHhhcccCcCC
Confidence 9999999999999999999999999999999999987743 34578888887654322 2468889999999999999
Q ss_pred CeEEEeCcccCCCCC---Ccchhhhccccc
Q 003331 247 NRFVFMDSLPMTSSG---KVDYASLSASTS 273 (829)
Q Consensus 247 ~~~~~~~~lP~t~~G---Ki~r~~l~~~~~ 273 (829)
..+++++++|+|++| |++|++|++.+.
T Consensus 502 ~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~ 531 (540)
T PRK06164 502 ARVQVVEAFPVTESANGAKIQKHRLREMAQ 531 (540)
T ss_pred cEEEEecCCCCCCCCccccccHHHHHHHHH
Confidence 999999999999999 999999987644
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=297.21 Aligned_cols=222 Identities=16% Similarity=0.269 Sum_probs=176.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCc-EEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC-DIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i 93 (829)
.++++||.++ |+.+++++++++.+.+++++++|.||+||+++.++. .. .....++|+|++++ +++|
T Consensus 717 ~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~--~~---------~~~~~svG~p~pg~~~v~i 783 (994)
T PRK07868 717 HGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLAN--VS---------GAKIGSKGRPLPGAGRVEL 783 (994)
T ss_pred CCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeecccccccccc--cC---------CCCCcccCCccCCCCceeE
Confidence 3567899776 445999999999999977899999999998754321 10 12456899999997 5655
Q ss_pred e-----------cCCC-----CCCCCCeEEEccccccccccCCCCCCcc--cccccCCcccccCcCCCCCcceEecCceE
Q 003331 94 V-----------ESDT-----VKPDEGEIYAGGLCLSNGYFSESTFMPS--EYVKLHNNSICNCSVSCGSQTYFRTGDFA 155 (829)
Q Consensus 94 ~-----------d~~~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~TGDl~ 155 (829)
. |+++ ++++.|||+++++. |+ +|+.+.. .|. .+++||+|||+|
T Consensus 784 ~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~----~~-~p~~t~~~~~~~--------------~~dgw~~TGDlg 844 (994)
T PRK07868 784 AAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARG----PI-DPTASVKRGVFA--------------PADTWISTEYLF 844 (994)
T ss_pred EEecCcCCceeecCCceEEEcCCCCceEEEEecCC----CC-ChhhhhHhcccc--------------cCCEEEeccceE
Confidence 3 3333 35677999999875 33 3433221 121 147899999999
Q ss_pred EEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHH
Q 003331 156 RRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSW 235 (829)
Q Consensus 156 ~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 235 (829)
++|+||+|+|+||+||+||++|++|+|.|||++|.+||.|.+|+|++.+++. .+.++++|+++++.... .++|+++
T Consensus 845 ~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~~~~~---~~~L~~~ 920 (994)
T PRK07868 845 RRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPGAAIT---AADLTEA 920 (994)
T ss_pred EEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCCCcCC---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999988765 46788899887653322 3578888
Q ss_pred HHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 236 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 236 l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++ +|.|++|..++++++||+|++||++|++|++...
T Consensus 921 l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 921 LAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred HHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 885 8999999999999999999999999999976543
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=293.35 Aligned_cols=232 Identities=18% Similarity=0.263 Sum_probs=181.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.++..+ + .++|.||+||+++.++..... .....++|+|+++++++|+|.+
T Consensus 428 ~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~~YG~TEt~~~~~~~~~~---------~~~~~svG~p~~g~evkI~d~~ 496 (700)
T PTZ00216 428 GRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQGWGLTETVCCGGIQRTG---------DLEPNAVGQLLKGVEMKLLDTE 496 (700)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHh-h-hHhhccCcccccccccccCCC---------CCCCCCcCCcCCCeEEEEeech
Confidence 6899999999999999988777766 5 899999999998665532211 2245789999999999999865
Q ss_pred C-----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 98 T-----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 98 ~-----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+ .++..|||+|+|++++.||+++|+.|.+.|.. ++||+|||+|++++||.|+|+||+||+
T Consensus 497 ~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~---------------dGw~~TGDig~~d~dG~l~i~GR~kd~ 561 (700)
T PTZ00216 497 EYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDE---------------DGWFHTGDVGSIAANGTLRIIGRVKAL 561 (700)
T ss_pred hhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccc---------------cCCeeccceEEEcCCCcEEEEEehHhh
Confidence 3 34557999999999999999999999998853 579999999999999999999999999
Q ss_pred EE-ECCeeeChHHHHHHHhCCCCeeEE--EEEEeecCCceEEEEEEEEecCCC-----------Cc------hHHHHHHH
Q 003331 173 IK-INGQRMALEEIEHTLRGHPDVVDT--AVVSHKHQGELVILVAFIVLKEKK-----------TS------SEIFLSSI 232 (829)
Q Consensus 173 ik-~~G~~i~~~~iE~~l~~~~~v~~~--~v~~~~~~~~~~~~~~~v~~~~~~-----------~~------~~~~~~~l 232 (829)
|| .+|++|+|++||+++.+||.|.++ +|+..++. ..++|++++.... .. .+...+.+
T Consensus 562 ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~~~~---~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 638 (700)
T PTZ00216 562 AKNCLGEYIALEALEALYGQNELVVPNGVCVLVHPAR---SYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKA 638 (700)
T ss_pred eecCCCceeccHHHHHHHhcCcCcccceEEEEEecCC---ceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHH
Confidence 99 699999999999999999999973 44443332 3678888875311 00 11122233
Q ss_pred HHHH-----HhcCCCCCcCCeEEEeCc------ccCCCCCCcchhhhcccccccccc
Q 003331 233 KSWV-----SSKLPLAMIPNRFVFMDS------LPMTSSGKVDYASLSASTSFTISA 278 (829)
Q Consensus 233 ~~~l-----~~~l~~~~~p~~~~~~~~------lP~t~~GKi~r~~l~~~~~~~~~~ 278 (829)
.+.+ +..+..+..++.|+++.+ =.+|+++|+.|+++.+.|+..++.
T Consensus 639 ~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 695 (700)
T PTZ00216 639 TESLQETARAAGRKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIKE 695 (700)
T ss_pred HHHHHHHHHhcCCCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHHH
Confidence 3322 246888888999988754 247999999999998877655443
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=282.38 Aligned_cols=232 Identities=21% Similarity=0.258 Sum_probs=176.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccC----CcEE-
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS----NCDI- 91 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~----~~~~- 91 (829)
..++|. ++|+++++++++++.+.++...++|.||+||++..++.. .. ...++|.+.+ +..+
T Consensus 313 ~~~l~~--~~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~--~~----------~~~~~g~~~~~~~~~~~~~ 378 (600)
T PRK08279 313 DHRLRL--MIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINV--FN----------FDGTVGRVPLWLAHPYAIV 378 (600)
T ss_pred CcceeE--EecCCCCHHHHHHHHHHhCcceeeeeecccccceeeccc--CC----------CCcccccccccccccceee
Confidence 445664 458889999999999999766799999999987533211 10 1223444433 2222
Q ss_pred --------EEecCCC-----CCCCCCeEE--EccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEE
Q 003331 92 --------VLVESDT-----VKPDEGEIY--AGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFAR 156 (829)
Q Consensus 92 --------~i~d~~~-----~~~~~Gel~--i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~ 156 (829)
.+.+.++ ++++.|||+ +.|++++.|| ++++.+...|...... .+++||+|||+|+
T Consensus 379 ~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~~~~~~~---------~~~~~~~TGDlg~ 448 (600)
T PRK08279 379 KYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKILRDVFK---------KGDAWFNTGDLMR 448 (600)
T ss_pred eeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHHhhcccC---------CCCceEeecceEE
Confidence 1222221 345679998 7899999999 8888888877543221 2468999999999
Q ss_pred EccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEecCCCCchHHHHHHHHHH
Q 003331 157 RIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVLKEKKTSSEIFLSSIKSW 235 (829)
Q Consensus 157 ~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 235 (829)
++++|.++++||.||+||++|+||+|.|||++|.++|+|.+|+|++.+... .+...+++++..++.. ...++++++
T Consensus 449 ~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~---~~~~~l~~~ 525 (600)
T PRK08279 449 DDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAE---FDLAALAAH 525 (600)
T ss_pred EcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCcc---CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999877543 2333445555543222 224689999
Q ss_pred HHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 236 VSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 236 l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
++++||.|++|..++++++||+|++||++|++|++.....
T Consensus 526 l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 565 (600)
T PRK08279 526 LYERLPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFDP 565 (600)
T ss_pred HHhhCccccCCeEEEeecCCCCCcchhhhHHHHhhcCCCc
Confidence 9999999999999999999999999999999998766543
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=283.92 Aligned_cols=229 Identities=21% Similarity=0.279 Sum_probs=182.5
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEEEecC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIVLVES 96 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~ 96 (829)
++||.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++..... .....++|.|+ ++++++++|.
T Consensus 461 ~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~~~~---------~~~~gsvG~p~~pg~e~ki~d~ 530 (746)
T PTZ00342 461 PNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQHAD---------DNNTESIGGPISPNTKYKVRTW 530 (746)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeeccCC---------CCCcccccCcCCCcEEEEEecc
Confidence 6899999999999999999998877 78999999999998665532211 22557899998 9999999973
Q ss_pred CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 97 DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 97 ~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+. ..++.|||+++||+++.|||++|+.|++.|. .++||+|||+|++++||+|+|+||+||+
T Consensus 531 ~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~---------------~dGW~~TGDig~~d~dG~l~i~gR~kdl 595 (746)
T PTZ00342 531 ETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFT---------------EDGYFKTGDIVQINKNGSLTFLDRSKGL 595 (746)
T ss_pred cccccCCCCCceEEEEecCcccccccCChhhhhhhcC---------------cCCcccCCcEEEECCCCeEEEEccCCCe
Confidence 32 3345799999999999999999999999884 2689999999999999999999999999
Q ss_pred EEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------------------Cch-H------
Q 003331 173 IKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------------------TSS-E------ 226 (829)
Q Consensus 173 ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------------------~~~-~------ 226 (829)
||+ +|++|+|.+||+++.+||.|.+|+|++.... ..++|+|++.... ... +
T Consensus 596 Ikls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~~~---~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~~~~~ 672 (746)
T PTZ00342 596 VKLSQGEYIETDMLNNLYSQISFINFCVVYGDDSM---DGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKLTDET 672 (746)
T ss_pred EEeCCCEEEchHHHHHHHhcCCCccEEEEEccCCc---cccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHhhhhh
Confidence 997 7999999999999999999999999986432 2578888765310 000 0
Q ss_pred ----HHHHHHHHHH-----HhcCCCCCcCCeEEEeCc-c----cCCCCCCcchhhhcccccc
Q 003331 227 ----IFLSSIKSWV-----SSKLPLAMIPNRFVFMDS-L----PMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 227 ----~~~~~l~~~l-----~~~l~~~~~p~~~~~~~~-l----P~t~~GKi~r~~l~~~~~~ 274 (829)
.+.+.+++.+ +..|+.+.+++.|.++.+ | -+|++.|+.|+.+.+.|+.
T Consensus 673 ~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~ 734 (746)
T PTZ00342 673 INNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAF 734 (746)
T ss_pred hccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHH
Confidence 1122223222 235999999999888753 3 3899999999999887653
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=281.07 Aligned_cols=237 Identities=24% Similarity=0.333 Sum_probs=191.0
Q ss_pred CCCCCccEEEEe--cCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLS--GEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~g--Ge~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++++.+..+ |+++++++.+.+++.++...+.+.||+||++..++......... ........++|+|+++++++
T Consensus 322 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~--~~~~~~~~~vG~p~~g~~v~ 399 (567)
T PRK06178 322 YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDD--FDLLSQPVFVGLPVPGTEFK 399 (567)
T ss_pred CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCc--cccccCCcccccccCCcEEE
Confidence 346778876544 59999999999999885444556899999876554321111000 00012456799999999999
Q ss_pred EecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 93 LVESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
++|++ + +.++.|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.++++||
T Consensus 400 v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~----------------dg~~~TGDl~~~~~~g~l~i~GR 463 (567)
T PRK06178 400 ICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALR----------------DGWLHTGDIGKIDEQGFLHYLGR 463 (567)
T ss_pred EEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhccc----------------CCceeecceEEEecCCeEEEEec
Confidence 99844 3 3466799999999999999999988876662 46999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.||+||++|++|+|.+||+++.+++.|.++++++.++...+..+++++++...... ..++++++++++++.+++|.
T Consensus 464 ~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~p~- 539 (567)
T PRK06178 464 RKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADL---TAAALQAWCRENMAVYKVPE- 539 (567)
T ss_pred ccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcC---CHHHHHHHHHhcCcccCCce-
Confidence 99999999999999999999999999999999998877666778888888654322 23578999999999999996
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++++|+|++||++|++|++.++
T Consensus 540 i~~v~~iP~t~~GKv~r~~l~~~~~ 564 (567)
T PRK06178 540 IRIVDALPMTATGKVRKQDLQALAE 564 (567)
T ss_pred EEEeccCCCCCccceeHHHHHHHHH
Confidence 8889999999999999999987654
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=277.03 Aligned_cols=233 Identities=24% Similarity=0.311 Sum_probs=192.9
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccc--cccCCcEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG--LPISNCDI 91 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~p~~~~~~ 91 (829)
...++++|.+++||+++++++.+++.+.+++..+++.||+||++..++..... ...+.| .+.++..+
T Consensus 292 ~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~-----------~~~~~g~~~~~~~~~~ 360 (533)
T PRK07798 292 PYDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAK-----------GAVHTGGPRFTIGPRT 360 (533)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCC-----------CCccCCCCccCCCceE
Confidence 34678999999999999999999999998889999999999986544322110 112233 77889999
Q ss_pred EEecCCCCC---CCC--CeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 92 VLVESDTVK---PDE--GEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 92 ~i~d~~~~~---~~~--Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+++++++.+ +.. |+++ .++.+..||+++++.+...|... ++.+||+|||+++++++|.++++
T Consensus 361 ~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~------------~~~~~~~TGD~~~~~~~g~l~~~ 427 (533)
T PRK07798 361 VVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTI------------DGVRYAIPGDRARVEADGTITLL 427 (533)
T ss_pred EEECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccC------------CCCceEEcCcEEEEcCCCcEEEE
Confidence 999877743 333 5665 45678999999999998887542 14679999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.|++||++|++|+|.+||+++.++|.|.+++|++.++...+..+++++++...... ..+++++++++.|+.+++|
T Consensus 428 GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~l~~~l~~~~~P 504 (533)
T PRK07798 428 GRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARP---DLAELRAHCRSSLAGYKVP 504 (533)
T ss_pred ccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCC---CHHHHHHHHhhhcccCCCC
Confidence 9999999999999999999999999999999999998877666778888887654322 2468899999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
..++.++++|+|++||++|+.|+++..
T Consensus 505 ~~i~~~~~iP~t~~GK~~~~~~~~~~~ 531 (533)
T PRK07798 505 RAIWFVDEVQRSPAGKADYRWAKEQAA 531 (533)
T ss_pred eEEEEcccCCCCCcchhhHHHHhhhhc
Confidence 999999999999999999999998653
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=280.37 Aligned_cols=239 Identities=21% Similarity=0.313 Sum_probs=189.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc--cCCCCccccccccCCcE-EE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MSTLKSVPIGLPISNCD-IV 92 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~p~~~~~-~~ 92 (829)
.++++|.++++|+++++.+.+++.+. +.++++.||+||+++.++............ .........|.|.+++. ++
T Consensus 308 ~~~~l~~~~~~G~~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 385 (567)
T PLN02479 308 PLPRVVHVMTAGAAPPPSVLFAMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLD 385 (567)
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCcee
Confidence 46899999999999999999998875 679999999999865444221110000000 00011234677777775 77
Q ss_pred EecCC-CC---CC--CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 93 LVESD-TV---KP--DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 93 i~d~~-~~---~~--~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
++|++ +. .+ ..|||+++|+.++.||+++|+.+.+.|. ++||+|||+++++++|.++|+
T Consensus 386 i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~----------------~g~~~TGDl~~~~~~g~l~~~ 449 (567)
T PLN02479 386 VVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA----------------NGWFHSGDLGVKHPDGYIEIK 449 (567)
T ss_pred EEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc----------------CCceecceeEEEcCCccEEEe
Confidence 88743 21 22 3599999999999999999999998873 479999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc--hHHHHHHHHHHHHhcCCCCC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS--SEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~l~~~l~~~l~~~~ 244 (829)
||.||+||++|+||+|.+||.+|.+||.|.+++|++.++...+..+++++++...... .+...++|+++++++||.++
T Consensus 450 GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 529 (567)
T PLN02479 450 DRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYW 529 (567)
T ss_pred ccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999998876666788888887755321 13455789999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 245 IPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+|..+++ .++|+|++||++|++|++.+.
T Consensus 530 ~P~~~~~-~~iP~t~~gKv~r~~L~~~~~ 557 (567)
T PLN02479 530 VPKSVVF-GPLPKTATGKIQKHVLRAKAK 557 (567)
T ss_pred CCceEEe-ccCCCCCccCeeHHHHHHHHH
Confidence 9998876 679999999999999986543
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=280.24 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=185.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCC-----ceEEeecCccccccccccccccCCCccc-----------------
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPN-----ISILNLYGSTEVSGDCTYFDCKRLPSIL----------------- 72 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~-----~~i~~~YG~TE~~~~~~~~~~~~~~~~~----------------- 72 (829)
.++++||.+++||+++++.+.+.+.+.++. ..+++.||+||++..++...........
T Consensus 296 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (579)
T PRK09192 296 LDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPG 375 (579)
T ss_pred cchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccC
Confidence 357899999999999999999999887632 3599999999998766543221100000
Q ss_pred --ccCCCCccccccccCCcEEEEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcc
Q 003331 73 --EMSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQT 147 (829)
Q Consensus 73 --~~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 147 (829)
........++|+|+++++++++|+++. .++.|||+++|+++++||+++ ..+.+.|. .++
T Consensus 376 ~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~---------------~dg 439 (579)
T PRK09192 376 AETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRD-EESQDVLA---------------ADG 439 (579)
T ss_pred CCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCchhhhhcCC-cccccccc---------------CCc
Confidence 000001247899999999999987653 456799999999999999998 55555443 367
Q ss_pred eEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCee--EEEEEEeecCCceEEEEEEEEecCCCCch
Q 003331 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV--DTAVVSHKHQGELVILVAFIVLKEKKTSS 225 (829)
Q Consensus 148 ~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 225 (829)
||+|||++++ ++|+++++||.||+||++|+||+|.|||++|.+||.|. ++++++.+++.. ..++++++.....
T Consensus 440 w~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~~-~~~~~~v~~~~~~--- 514 (579)
T PRK09192 440 WLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQENG-EKIVLLVQCRISD--- 514 (579)
T ss_pred eeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCCC-eeEEEEEEecCCC---
Confidence 9999999998 99999999999999999999999999999999999998 888888877653 4677777765432
Q ss_pred HHHHHHHHHHHHhcCC-CCCcCCeEEEeC--cccCCCCCCcchhhhcccccc
Q 003331 226 EIFLSSIKSWVSSKLP-LAMIPNRFVFMD--SLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 226 ~~~~~~l~~~l~~~l~-~~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+...+++++++++.++ .+++|..++++. +||+|++||++|++|++.+..
T Consensus 515 ~~~~~~l~~~~~~~l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~ 566 (579)
T PRK09192 515 EERRGQLIHALAALVRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS 566 (579)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence 2233567777777764 577888887775 899999999999999887654
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=281.74 Aligned_cols=233 Identities=25% Similarity=0.309 Sum_probs=181.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
++||.+++||+++++++.+.+ +.++.+.+++.||+||+++.++..... ......++|.|+++++++++|.+
T Consensus 383 ~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~gsvG~p~~~~evki~d~~ 453 (660)
T PLN02430 383 GRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGPTTLGFPD--------EMCMLGTVGAPAVYNELRLEEVP 453 (660)
T ss_pred CeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhceEeeccc--------cCCCCCCccCCCCceEEEEEEcC
Confidence 689999999999999986555 445457899999999998765532211 11135679999999999997621
Q ss_pred --C----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 98 --T----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 98 --~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
+ ..+..|||+|+|++++.||+++|+.|.+.| .++||+|||+|++++||.|+|+||+||
T Consensus 454 ~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~----------------~dGw~~TGDig~~d~dG~l~i~gR~kd 517 (660)
T PLN02430 454 EMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM----------------KDGWFHTGDIGEILPNGVLKIIDRKKN 517 (660)
T ss_pred CcCcccCCCCCcceEEecCCCccccccCChHHhhhhh----------------hccceeccceEEECCCCcEEEEEcccc
Confidence 1 233469999999999999999999998877 257999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------------chHHHHH---
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------------SSEIFLS--- 230 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~~~~--- 230 (829)
+||+ +|++|+|.+||.++.+||.|.+|+|++.. ....++|+|++..... ..+.+.+
T Consensus 518 ~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~~---~~~~~~A~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 594 (660)
T PLN02430 518 LIKLSQGEYVALEYLENVYGQNPIVEDIWVYGDS---FKSMLVAVVVPNEENTNKWAKDNGFTGSFEELCSLPELKEHIL 594 (660)
T ss_pred cEEcCCCcEEchHHHHHHHhcCCCeeEEEEEecC---CcceEEEEEEcCHHHHHHHHHhCCCCCCHHHHhcCHHHHHHHH
Confidence 9998 79999999999999999999999999843 2347888888764210 0111222
Q ss_pred -HHHHHH-HhcCCCCCcCCeEEEeCc-c-----cCCCCCCcchhhhcccccccccc
Q 003331 231 -SIKSWV-SSKLPLAMIPNRFVFMDS-L-----PMTSSGKVDYASLSASTSFTISA 278 (829)
Q Consensus 231 -~l~~~l-~~~l~~~~~p~~~~~~~~-l-----P~t~~GKi~r~~l~~~~~~~~~~ 278 (829)
++.+.. +..|+.+.++..++++++ | .+|+++|+.|+.+.+.|...++.
T Consensus 595 ~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~ 650 (660)
T PLN02430 595 SELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDE 650 (660)
T ss_pred HHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHH
Confidence 333332 235999999999998764 3 58999999999998877655433
|
|
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=268.04 Aligned_cols=327 Identities=27% Similarity=0.340 Sum_probs=235.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCC--cEEEEe
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN--CDIVLV 94 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--~~~~i~ 94 (829)
.+.|+..+.+||+++.++...+.+.+.-.-+..-|++||....+++..+.........+....+|...-+-+ ....+.
T Consensus 326 ~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~ 405 (1032)
T KOG1178|consen 326 RSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESL 405 (1032)
T ss_pred chhheeeeecCCccchhhhhhhhhcccceeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeee
Confidence 447999999999999999987777654444455599999998888777655444333332222222211111 111111
Q ss_pred cCCCCCCCCCeEEEccccccccccCCCC-----CCcccccccCCcccccCc-CCCCCcceEecCceEEEccCCcEEEEee
Q 003331 95 ESDTVKPDEGEIYAGGLCLSNGYFSEST-----FMPSEYVKLHNNSICNCS-VSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 95 d~~~~~~~~Gel~i~g~~~~~gy~~~~~-----~~~~~f~~~~~~~~~~~~-~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
. ..+..||.++.+.+++.++....- .+++.|. +++. .....+++|+|||+|+..++|.+.+.||
T Consensus 406 ~---~~~~~~~~~v~~~~l~~~~~~~~~~~~g~~~~~~~~-------~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR 475 (1032)
T KOG1178|consen 406 Y---RAGGEGEGGVGKGCLGAEQNLSSWVVDGYSTPENFL-------PNFLTVDGVKARIYRTGDNGRSLKNGGLEISGR 475 (1032)
T ss_pred e---ccCcccCCcccceeecccccccceeeccccchhhcC-------CcccccccchhhcccccccceeecCCCEEEEEe
Confidence 1 123345555555555554432211 2222221 1111 1234678999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.|+|||+||+|+.+.||++++..||.|.++.+....+...++.+++|++........ ....|+.++.+.|+.||+|..
T Consensus 476 ~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~--~~~~i~~~l~~~La~y~vPs~ 553 (1032)
T KOG1178|consen 476 ADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKSV--LIRDIRNYLKKELASYMLPSL 553 (1032)
T ss_pred ccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCch--hHHHHHHhhcccccceecceE
Confidence 999999999999999999999999999999999988887788999999987664433 367899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccccccccccc----ccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHH
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDA----DETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAA 324 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~ 324 (829)
++.++++|+|++||||+++|..........+... .+...+..+..++..|-...+...++++++||++||||+.|+
T Consensus 554 ~V~l~~vPl~~~GKvDkkaL~~~~s~~~~~~~s~~~~~~~~~~~~~~~~v~d~~l~~~~~~~~s~d~~fF~lGgdSi~av 633 (1032)
T KOG1178|consen 554 VVPLAKVPLNPNGKVDKKALLEYNSKLTNVQDSSLSEAKDSILSLPLSTVFDLWLSIGSLAIVSPDSSFFQLGGDSISAV 633 (1032)
T ss_pred EEEhhhCCcCCCCCcChhhhhhhhhhhcccccceeeccccccccccccchhhhhhhhcCccccCCCcchhhhcchhHHHH
Confidence 9999999999999999999988444332222221 122333455566777766666456788999999999999999
Q ss_pred HHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 325 HVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 325 ~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
++...| +.++..+|..+|+..++..+.....
T Consensus 634 ~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~~~ 670 (1032)
T KOG1178|consen 634 RLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRIKS 670 (1032)
T ss_pred HHHHhhhhhheeccccccccchhhHHHHHHHHhhhhh
Confidence 998765 4788899999999999877665543
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=282.66 Aligned_cols=234 Identities=21% Similarity=0.335 Sum_probs=180.1
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHh----C-CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKL----F-PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~----~-~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
.+++||.+++||+++++++.+.+.+. + .++++++.||+||++..++..... .....++|+|+++++
T Consensus 332 ~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~pg~~ 402 (614)
T PRK08180 332 FFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGP---------LSRAGNIGLPAPGCE 402 (614)
T ss_pred hccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccc---------cCCCCcccCccCCcE
Confidence 46899999999999999999998875 2 247899999999998666532211 124568999999999
Q ss_pred EEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE----ccCCcEEEE
Q 003331 91 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR----IQSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~----~~~G~l~~~ 166 (829)
++++|+ +..|||+++|+.++.||+++|+.|.+.|. .++||+|||+|++ +++|+++|+
T Consensus 403 v~i~d~----~~~GEi~vrg~~v~~GY~~~p~~t~~~~~---------------~dgw~~TGDlg~~~~~~d~~g~l~i~ 463 (614)
T PRK08180 403 VKLVPV----GGKLEVRVKGPNVTPGYWRAPELTAEAFD---------------EEGYYRSGDAVRFVDPADPERGLMFD 463 (614)
T ss_pred EEEecC----CCCcEEEEecCccchhhcCChhHhHhhcc---------------cCCceeccceEEecCCcCCCCceEEe
Confidence 999975 34699999999999999999999888773 3689999999999 468999999
Q ss_pred eecCCcEEE-CCeeeC--hHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC-----------c-hHHHHHH
Q 003331 167 GRKDRTIKI-NGQRMA--LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT-----------S-SEIFLSS 231 (829)
Q Consensus 167 GR~dd~ik~-~G~~i~--~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----------~-~~~~~~~ 231 (829)
||+||+||+ +|++|+ |.|+|.++.+||.|.+|+|++.+++ .+.|+|++..+.. . .....++
T Consensus 464 GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (614)
T PRK08180 464 GRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPA 539 (614)
T ss_pred cchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHH
Confidence 999999997 799877 7788899999999999999998865 4667787764310 0 0011234
Q ss_pred HHHHHHhcCCCCC--------cCCeEEEeCcccCCCCC------Ccchhhhccccccccccccc
Q 003331 232 IKSWVSSKLPLAM--------IPNRFVFMDSLPMTSSG------KVDYASLSASTSFTISAQHD 281 (829)
Q Consensus 232 l~~~l~~~l~~~~--------~p~~~~~~~~lP~t~~G------Ki~r~~l~~~~~~~~~~~~~ 281 (829)
|++++++.|..+. .|+++++++++|++++| |+.|+++.+.|+..++..+.
T Consensus 540 l~~~~~~~l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~ 603 (614)
T PRK08180 540 VRAAFRERLARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYA 603 (614)
T ss_pred HHHHHHHHHHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhC
Confidence 5555555554444 89999999999987666 55677777766665555444
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-28 Score=262.46 Aligned_cols=166 Identities=29% Similarity=0.467 Sum_probs=150.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
..+|++++||+++++++...++.. +++++++||+|||++.++..+..+ ....++|+|+|+++++|.|+
T Consensus 353 gri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v~~~~~---------~~~gtvG~p~p~~evKI~d~- 420 (613)
T COG1022 353 GRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSVNPPDR---------FVLGTVGKPLPGIEVKIADD- 420 (613)
T ss_pred CcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEEccccC---------cccCCcCCcCCCceEEEccC-
Confidence 579999999999999999988887 799999999999998888754432 35678899999999999985
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEE-C
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI-N 176 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~-~ 176 (829)
|||+|+||.+++|||++|+.|++.|.. +|||+|||+|.++++|+|.++||+++.||. +
T Consensus 421 ------GEilVRG~~Vm~GYyk~pe~Taeaf~~---------------DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~ 479 (613)
T COG1022 421 ------GEILVRGPNVMKGYYKNPEATAEAFTE---------------DGWFRTGDLGELDEDGYLVITGRKKELIKLSN 479 (613)
T ss_pred ------ceEEEecchhcchhcCChHHHhhhccc---------------cCCcccCceeEEcCCCcEEEeecccceEECCC
Confidence 999999999999999999999999963 899999999999999999999999999999 9
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
|++|.|+.||..+.++|.|.+++|++..+. .+.|++++..
T Consensus 480 GknIaP~~IE~~l~~~~~I~qi~vvg~~k~----~~~AlIvp~~ 519 (613)
T COG1022 480 GKNIAPEPIESKLAKSPLIEQICVVGDDKK----FLVALIVPDF 519 (613)
T ss_pred CcccChHHHHHHHhcCCCeeEEEEEecCCc----ceEEEEeCCH
Confidence 999999999999999999999999993332 6788888754
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=274.88 Aligned_cols=250 Identities=21% Similarity=0.269 Sum_probs=180.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCccc-------cc---------
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSIL-------EM--------- 74 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~~-------~~--------- 74 (829)
+++++|.+++||++++++++++|.+.++ +..+++.||+||++..+........+... ..
T Consensus 286 ~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (578)
T PRK05850 286 DLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETG 365 (578)
T ss_pred chhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCC
Confidence 5679999999999999999999988763 35799999999987655432211100000 00
Q ss_pred CCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEe
Q 003331 75 STLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFR 150 (829)
Q Consensus 75 ~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 150 (829)
......++|.|. +.+++++|++. +.++.|||+++|+.++.||+++|+.+.+.|......+. .....++||+
T Consensus 366 ~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~----~~~~~~~w~~ 440 (578)
T PRK05850 366 GGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPS----PGTPEGPWLR 440 (578)
T ss_pred CCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCcccccccCChhhhHHHhhccccccc----ccCCCCCeee
Confidence 011123456664 57889988543 35677999999999999999999999998854221100 0011357999
Q ss_pred cCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHH---
Q 003331 151 TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI--- 227 (829)
Q Consensus 151 TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 227 (829)
|||+|+++ +|+++++||.||+||++|++|+|.|||++|.+||.+. +++++.++. .+..++++++++......+.
T Consensus 441 TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~~-~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~ 517 (578)
T PRK05850 441 TGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGR-VAAISVPDD-GTEKLVAIIELKKRGDSDEEAMD 517 (578)
T ss_pred ccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCCc-EEEEEecCC-CceEEEEEEEeccccCcchhhhh
Confidence 99999987 9999999999999999999999999999999999854 667777765 55678888888765332211
Q ss_pred HHHHHHHHHHhcCCC--CCcCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 228 FLSSIKSWVSSKLPL--AMIPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~--~~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
....+++.+...++. ...|..+++++ .||+|++|||+|++|++.+.
T Consensus 518 ~~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~ 567 (578)
T PRK05850 518 RLRTVKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYR 567 (578)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHH
Confidence 234555555554432 23566666664 79999999999999988664
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-27 Score=257.02 Aligned_cols=197 Identities=19% Similarity=0.278 Sum_probs=166.9
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+++.+++||+++++++.+++++. ..+++|.||+||+++++.... .....++|+|++++++++.++
T Consensus 212 ~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-----------~~~~~~~G~p~~~~~~~~~~~- 277 (414)
T PRK08308 212 FQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSICPD-----------MKSHLDLGNPLPHVSVSAGSD- 277 (414)
T ss_pred ccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeecCC-----------CCCCCccCccCCCeEEEEecC-
Confidence 478999999999999999999887 468999999999986443211 113457899999999988753
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
.+..|||++.+ ..+||+|||+++++++|.++++||.||+||++|
T Consensus 278 --~~~~gel~v~~----------------------------------~~~~~~TGDl~~~~~dg~l~~~GR~~~~ik~~G 321 (414)
T PRK08308 278 --ENAPEEIVVKM----------------------------------GDKEIFTKDLGYKSERGTLHFMGRMDDVINVSG 321 (414)
T ss_pred --CCCCceEEEEc----------------------------------CCceEECCceEEECCCccEEEecccCCeEEECC
Confidence 34569998853 146899999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003331 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
+||+|.|||++|.++|+|.+++|++.+++..++.++++++..... ..++++++++++|+.+++|..++.+++||+
T Consensus 322 ~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~-----~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~ 396 (414)
T PRK08308 322 LNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI-----DPVQLREWCIQHLAPYQVPHEIESVTEIPK 396 (414)
T ss_pred EEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC-----CHHHHHHHHHHhCccccCCcEEEEeccCCC
Confidence 999999999999999999999999988877777788888765421 235788899999999999999999999999
Q ss_pred CCCCCcchhhhc
Q 003331 258 TSSGKVDYASLS 269 (829)
Q Consensus 258 t~~GKi~r~~l~ 269 (829)
|++||++|+.|.
T Consensus 397 t~~GKi~r~~~~ 408 (414)
T PRK08308 397 NANGKVSRKLLE 408 (414)
T ss_pred CCCcCeehhhhh
Confidence 999999999543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.1e-25 Score=240.49 Aligned_cols=323 Identities=17% Similarity=0.284 Sum_probs=231.2
Q ss_pred Ccccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc--eee---c----eEEe
Q 003331 457 NKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IEC---S----AAVL 525 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~~~---~----~~~~ 525 (829)
.+...+++.|+++++.. +.++|++ .+++||+++.++.|+++|+.||+++|+++.... ... + ..+.
T Consensus 42 ~nv~~L~~~W~~~~g~~~g~~stPvv----~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~a 117 (527)
T TIGR03075 42 ENVKKLQPAWTFSLGKLRGQESQPLV----VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVA 117 (527)
T ss_pred hhhccceEEEEEECCCCCCcccCCEE----ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccce
Confidence 33457889999999753 6789998 588999999999999999999999999876422 110 0 1112
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEEE
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~w 594 (829)
..++.||+++.++.|+++|++||+++|++.... .+.++|++.+ +.|++++. +|.|+++|++||+.+|
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 234689999999999999999999999987532 2456677764 67888753 5899999999999999
Q ss_pred eeccC--------------------------------CcccccceeecCCCEEEEEecC-----C-----------eEEE
Q 003331 595 KLPCG--------------------------------GSIFGSPAIDEVHDVLYVASTS-----G-----------RLTA 626 (829)
Q Consensus 595 ~~~~~--------------------------------~~~~~~~~~~~~~~~l~v~t~~-----g-----------~l~~ 626 (829)
++... +.++..+.++++.+.||+++.+ + .|++
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 196 RRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred eccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 86542 2345667888888999999833 2 5899
Q ss_pred EEccCCCceEEEeeccCCcce------eeeeee---ecCC---EEEEEeeCCeEEEEc-CCCCEEEEe----------ec
Q 003331 627 ISVKALPFHTLWLHELEVPAF------ASLCIT---SANR---HVICCLVDGHVVALD-SSGSIIWRC----------RT 683 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~------~s~~~~---~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~----------~~ 683 (829)
+|++| |+.+|+++...... ..+.+. .+++ .+..++.+|.+|++| .+|+++|.. ..
T Consensus 276 ld~~T--G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 276 RDPDT--GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred Ecccc--CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 99998 99999997643211 122222 2333 566888999999999 899987321 11
Q ss_pred C----Cce----------------eecCc---------cccc-CCCeEEEEee---------------------------
Q 003331 684 G----GPI----------------FAGPC---------TSFA-LPSQVLICSR--------------------------- 706 (829)
Q Consensus 684 ~----~~~----------------~~~~~---------~~~~-~~~~i~~~t~--------------------------- 706 (829)
. .++ ...|. ...+ ..+.+|+.+.
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 1 000 00000 0001 1233444322
Q ss_pred ------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccc
Q 003331 707 ------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSK 780 (829)
Q Consensus 707 ------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~ 780 (829)
.|.|.++|+.||+++|+++...+....+... .++.+++++.+|.++++|.++|
T Consensus 434 p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t------------~g~lvf~g~~~G~l~a~D~~TG--------- 492 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT------------AGDLVFYGTLEGYFKAFDAKTG--------- 492 (527)
T ss_pred CCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEE------------CCcEEEEECCCCeEEEEECCCC---------
Confidence 2579999999999999988765543333222 2778899999999999999988
Q ss_pred cccceeeeeeccCCcccccceE--ECCEEEEeee
Q 003331 781 DHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR 812 (829)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~ 812 (829)
+.+|++++.+.+..+|+. .++++|+...
T Consensus 493 ----e~lw~~~~g~~~~a~P~ty~~~G~qYv~~~ 522 (527)
T TIGR03075 493 ----EELWKFKTGSGIVGPPVTYEQDGKQYVAVL 522 (527)
T ss_pred ----CEeEEEeCCCCceecCEEEEeCCEEEEEEE
Confidence 778888999888899987 6788887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-27 Score=271.37 Aligned_cols=235 Identities=18% Similarity=0.262 Sum_probs=177.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhC----C-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLF----P-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~----~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
.+++||.+++||+++++++.+.+.+.+ + ++.+++.||+||++..++..... .....++|+|+++++
T Consensus 344 ~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~pg~~ 414 (624)
T PRK12582 344 FFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWD---------TERVGLIGLPLPGVE 414 (624)
T ss_pred HhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCC---------CCCCCCCCcCCCCcE
Confidence 367999999999999999999998863 2 36899999999998655421110 123557899999999
Q ss_pred EEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE-c---cCCcEEEE
Q 003331 91 IVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR-I---QSGDLVFL 166 (829)
Q Consensus 91 ~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~-~---~~G~l~~~ 166 (829)
+++++ .++.|||+|+|++++.||+++|+.+.+.|. .++||+|||+|++ + ++|.|+|+
T Consensus 415 v~i~~----~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~---------------~dgw~~TGDlg~~~d~~~~~g~l~i~ 475 (624)
T PRK12582 415 LKLAP----VGDKYEVRVKGPNVTPGYHKDPELTAAAFD---------------EEGFYRLGDAARFVDPDDPEKGLIFD 475 (624)
T ss_pred EEEcc----CCCceEEEEECCcccccccCCccchhhhcC---------------ccCCccccceEEecCCcCCCCceEEe
Confidence 99973 356799999999999999999999988873 3689999999998 4 46999999
Q ss_pred eecCCcEEE-CCeeeChHHHH--HHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC---------C------chHHH
Q 003331 167 GRKDRTIKI-NGQRMALEEIE--HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK---------T------SSEIF 228 (829)
Q Consensus 167 GR~dd~ik~-~G~~i~~~~iE--~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~---------~------~~~~~ 228 (829)
||+||+||+ +|++|+|.+|| .++.+||.|.+|+|++.+++. +.++|++.... . ..+.+
T Consensus 476 GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l 551 (624)
T PRK12582 476 GRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAV 551 (624)
T ss_pred ccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHH
Confidence 999999997 79999999885 688899999999999987664 33343332110 0 11222
Q ss_pred HHHHHH---HHHhcCCCCC-cCCeEEEeCcccC------CCCCCcchhhhcccccccccccccc
Q 003331 229 LSSIKS---WVSSKLPLAM-IPNRFVFMDSLPM------TSSGKVDYASLSASTSFTISAQHDA 282 (829)
Q Consensus 229 ~~~l~~---~l~~~l~~~~-~p~~~~~~~~lP~------t~~GKi~r~~l~~~~~~~~~~~~~~ 282 (829)
.+.++. ..++.+|.+. .|.++++++++|+ |++||+.|+++.+.|..+++..+..
T Consensus 552 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~ 615 (624)
T PRK12582 552 LAILREGLSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE 615 (624)
T ss_pred HHHHHHHHHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC
Confidence 233332 2334467776 9999999998875 5566677888877777666665543
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=263.25 Aligned_cols=234 Identities=22% Similarity=0.299 Sum_probs=182.5
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCccccc--CCCCccccccccCC-cEEEE
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEM--STLKSVPIGLPISN-CDIVL 93 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~p~~~-~~~~i 93 (829)
+.+++.++++|+++++.+.+.+.+. ++++++.||+||++..++............. ......+.|.+++. ..+++
T Consensus 295 ~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i 372 (545)
T PRK08162 295 IDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTV 372 (545)
T ss_pred CccceEEEECCCCCCHHHHHHHHHh--CCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEE
Confidence 4456778899999999999988775 7899999999998644432211100000000 01112345665543 35677
Q ss_pred ecCC-CC---C-C-CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 94 VESD-TV---K-P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 94 ~d~~-~~---~-~-~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
+|++ +. . + ..|||+++|+.++.||+++++.+...|. ++||+|||+++++++|.++++|
T Consensus 373 ~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~----------------~g~~~TGDl~~~d~dg~l~~~G 436 (545)
T PRK08162 373 LDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA----------------GGWFHTGDLAVLHPDGYIKIKD 436 (545)
T ss_pred EcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh----------------CCCcccCceEEEcCCccEEEEe
Confidence 7753 22 1 2 2499999999999999999999888772 4699999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
|.||+||++|+||+|.+||+.|.++|.|.+++|++.++...++.+++++++...... ..+++++++++.||.+++|.
T Consensus 437 R~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~l~~~~~P~ 513 (545)
T PRK08162 437 RSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASA---TEEEIIAHCREHLAGFKVPK 513 (545)
T ss_pred cccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCC---CHHHHHHHHHHhcccccCCc
Confidence 999999999999999999999999999999999998877666788888887765332 23689999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
.+++ .++|+|++||++|+.|++.+
T Consensus 514 ~~~~-~~iP~t~~gK~~r~~l~~~~ 537 (545)
T PRK08162 514 AVVF-GELPKTSTGKIQKFVLREQA 537 (545)
T ss_pred EEEe-cccCCCCCcCCcHHHHHHHH
Confidence 9875 68999999999999998754
|
|
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-27 Score=240.87 Aligned_cols=234 Identities=26% Similarity=0.419 Sum_probs=186.7
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
-.||++++||+||+++.-+.+.-.+ .+++...||.||+++.++..+.. +.....+|.|++-+++.++|-+
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~-C~Pv~qGYGLTEtca~~tv~e~~---------d~~~g~vG~pl~c~eiKLvdw~ 471 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICF-CCPVLQGYGLTETCAAATVLEPE---------DFSTGRVGAPLPCCEIKLVDWE 471 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhc-cccccccccccchhcccEecChh---------hcccccccCCccceEEEEEEhh
Confidence 4799999999999999877776666 67999999999999877765433 3355678999999999999743
Q ss_pred C------CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 98 T------VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 98 ~------~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
. ..++.|||+|+|+.+..||+++|+.|.+.|... ++.+||+|||+|++++||.|.++.|++|
T Consensus 472 EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~------------~G~~WF~TGDIGe~~pdG~LkIIDRKKd 539 (678)
T KOG1180|consen 472 EGGYFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVE------------DGQRWFRTGDIGEFHPDGCLKIIDRKKD 539 (678)
T ss_pred hcCccCCCCCCCceEEecCCccChhhhCChhhhhhhceec------------CCcEEEeccccceecCCCcEEEeechhh
Confidence 2 223689999999999999999999999999761 2567999999999999999999999999
Q ss_pred cEEE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC------------c----------hHHH
Q 003331 172 TIKI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT------------S----------SEIF 228 (829)
Q Consensus 172 ~ik~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~------------~----------~~~~ 228 (829)
.||+ +|+-|+++-+|+++...|.|...+|.+.... ..++++|++..... . ..+.
T Consensus 540 LVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~~~---s~~VaiVVPn~~~lt~lA~k~Gi~~~~~e~lc~d~k~~~~v 616 (678)
T KOG1180|consen 540 LVKLQNGEYISLGKVEAALRSSPYVDNICVYADSNK---SKPVAIVVPNQKHLTKLAEKAGISGSTWEELCEDKKVVKAV 616 (678)
T ss_pred hhhhcccceeehHHHHHHHhcCcchhheEEeccccc---ceeEEEEcCCchHHHHHHHHcCCChhhHHHHhccHHHHHHH
Confidence 9999 9999999999999999999999999887654 37899999874320 0 0112
Q ss_pred HHHHHHHH-HhcCCCCCcCCeEEEeCcc--c----CCCCCCcchhhhcccccccc
Q 003331 229 LSSIKSWV-SSKLPLAMIPNRFVFMDSL--P----MTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 229 ~~~l~~~l-~~~l~~~~~p~~~~~~~~l--P----~t~~GKi~r~~l~~~~~~~~ 276 (829)
.++|.+.- +++|..+.+|..+++.++- | .|+.-|+.|+.++..+..++
T Consensus 617 ~k~L~~~ak~~~L~~iEip~~I~l~~e~WTPenGlvT~A~KLKRk~I~~~~k~ei 671 (678)
T KOG1180|consen 617 LKELIEAAKSQKLERIEIPAKIVLSPEPWTPENGLVTAALKLKRKEILAAYKKEI 671 (678)
T ss_pred HHHHHHHHHhcccccccccceeEecCCCcCCCccccHHHHHhhHHHHHHHHHHHH
Confidence 23333333 5678899999999887752 2 34556888888877665443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=241.32 Aligned_cols=292 Identities=21% Similarity=0.287 Sum_probs=212.4
Q ss_pred EECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-e------eeeeeeecCCC
Q 003331 501 ADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-V------KCQPVVDAPRQ 571 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~------~~~~~~~~~~~ 571 (829)
-+..++++.|+++.+ ..+..++++. ++.+|+++.++.|+++|++||+++|+++.... . ...++...+++
T Consensus 34 ~n~~~~~~~W~~~~~~~~~~~~sPvv~--~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~ 111 (488)
T cd00216 34 ANVKKLKVAWTFSTGDERGQEGTPLVV--DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPR 111 (488)
T ss_pred hhhhcceeeEEEECCCCCCcccCCEEE--CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCC
Confidence 344568889999886 4555566665 45899999999999999999999999876543 1 11111121237
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccCCc------ccccceeecCCCEEEEEec---------CCeEEEEEccCCCceE
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGSPAIDEVHDVLYVAST---------SGRLTAISVKALPFHT 636 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~~~~~~l~v~t~---------~g~l~~~~~~~~~g~~ 636 (829)
.||+++.++.|+++|.+||+.+|++..... +.++|.+.+ +.+|+++. +|.++++|.++ |+.
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~--~~v~vg~~~~~~~~~~~~g~v~alD~~T--G~~ 187 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVK--KLVIIGSSGAEFFACGVRGALRAYDVET--GKL 187 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEEC--CEEEEeccccccccCCCCcEEEEEECCC--Cce
Confidence 899999999999999999999999988665 567888876 88998863 57899999998 999
Q ss_pred EEeeccCCc---------------------ceeeeeeeecCCEEEEEeeCC------------------eEEEEc-CCCC
Q 003331 637 LWLHELEVP---------------------AFASLCITSANRHVICCLVDG------------------HVVALD-SSGS 676 (829)
Q Consensus 637 ~w~~~~~~~---------------------~~~s~~~~~~~~~l~~~~~~g------------------~i~~~d-~~g~ 676 (829)
+|+++...+ ...++.+...++.+|+++.++ .++++| .+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 999876421 112334444578999998665 799999 9999
Q ss_pred EEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecC-Cccccccccccccccc
Q 003331 677 IIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLK 743 (829)
Q Consensus 677 ~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~ 743 (829)
++|+++...+ ..+.+.+... .++ .+++++.+|.++++|.+||+++|++... ......
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~---------- 337 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYD---------- 337 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccC----------
Confidence 9999875432 1122222111 122 5899999999999999999999998754 111111
Q ss_pred cccccCCCcEEEEE------------------ccCCcEEEEEeecCccccccccccccceeeeeeccC---------Ccc
Q 003331 744 LESCLSIDRLVCIC------------------TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ---------GDI 796 (829)
Q Consensus 744 ~~~~~~~~~~l~~~------------------~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 796 (829)
.+.+|++ ..+|.|+++|..+| +.+|+.... +..
T Consensus 338 -------~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG-------------~~~W~~~~~~~~~~~~~g~~~ 397 (488)
T cd00216 338 -------PGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG-------------KVVWEKREGTIRDSWNIGFPH 397 (488)
T ss_pred -------CceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC-------------cEeeEeeCCccccccccCCcc
Confidence 2344443 35688999999877 444554443 233
Q ss_pred cc-cceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 797 FS-SPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 797 ~~-s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.. ++++.++.||+++.+|.||++|.+||++.+
T Consensus 398 ~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 398 WGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 33 456788999999999999999999999764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=247.79 Aligned_cols=234 Identities=20% Similarity=0.241 Sum_probs=182.1
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
..+|.+++|++|+++++...++..+ +++|+++||+|||++.++..... +....++|.|+|+++++++|..
T Consensus 419 g~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~~~---------d~~lgsvG~p~p~~~vKL~dvp 488 (691)
T KOG1256|consen 419 GNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTLPG---------DNVLGSVGPPVPGNEVKLVDVP 488 (691)
T ss_pred CceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEeccCC---------CCCCCCcCCcccCceEEEechH
Confidence 6799999999999999999999887 89999999999999666543221 2256789999999999998754
Q ss_pred C----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 98 T----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 98 ~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
. ..+..|||||+|++++.||+++|+.|.+.|. .+||++|||+|+++++|.|.++||+++++
T Consensus 489 e~ny~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~id---------------eDGWLhTGDiG~~~p~G~l~IidRkK~if 553 (691)
T KOG1256|consen 489 EMNYDADGSKGEICVRGPNVFMGYYKDPEKTAEAID---------------EDGWLHTGDIGEWDPNGTLKIIDRKKNIF 553 (691)
T ss_pred HhCcCcCCCcceEEEecchhceeccCChHHHhhhhc---------------cccccccccceeECCCccEEEEecccceE
Confidence 3 3445799999999999999999999999985 48999999999999999999999999999
Q ss_pred EE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc---------------------hHHHHHH
Q 003331 174 KI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS---------------------SEIFLSS 231 (829)
Q Consensus 174 k~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~ 231 (829)
|+ .|+.|.|+.||++..+.+.|.+.+|.+.... ..|+|+|++...... .+...++
T Consensus 554 klaqGEyVaPe~IEniy~~~~~V~qi~V~g~s~~---~~LvaiVvpd~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~e 630 (691)
T KOG1256|consen 554 KLAQGEYVAPEKIENIYKRSLPVQQIFVLGDSLR---SFLVAIVVPDPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSE 630 (691)
T ss_pred EcCCCCccChHHHHHHHhcCCceEEEEEECCcch---hcEEEEEecChhhchhhHHHccCchhHHHHhcChhhHHHHHHH
Confidence 99 9999999999999999999999999876644 378888888543211 0111222
Q ss_pred HHHHHH-hcCCCCCcCCeEEEeC------cccCCCCCCcchhhhccccccccccc
Q 003331 232 IKSWVS-SKLPLAMIPNRFVFMD------SLPMTSSGKVDYASLSASTSFTISAQ 279 (829)
Q Consensus 232 l~~~l~-~~l~~~~~p~~~~~~~------~lP~t~~GKi~r~~l~~~~~~~~~~~ 279 (829)
+.+..+ ..+..+..-..+.+.+ .=-+||+-|+.|..+.+.|..++...
T Consensus 631 l~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~~yk~~Id~m 685 (691)
T KOG1256|consen 631 LVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLKYYKKQIDEL 685 (691)
T ss_pred HHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 222221 2244444434444422 22468899999999998887665443
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=260.86 Aligned_cols=241 Identities=20% Similarity=0.282 Sum_probs=177.8
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHh---C--CCceEEeecCccccccccccccccCCC-------cc-------cc--
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKL---F--PNISILNLYGSTEVSGDCTYFDCKRLP-------SI-------LE-- 73 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~---~--~~~~i~~~YG~TE~~~~~~~~~~~~~~-------~~-------~~-- 73 (829)
.++++||.+++|||++++.+.+.+.+. + +...+++.||+||++..++...+.... .. ..
T Consensus 273 ~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (545)
T PRK07768 273 FDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPAT 352 (545)
T ss_pred CCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccC
Confidence 567899999999999999999988774 3 234699999999998765543321100 00 00
Q ss_pred -cCCCCccccccccCCcEEEEecCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceE
Q 003331 74 -MSTLKSVPIGLPISNCDIVLVESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYF 149 (829)
Q Consensus 74 -~~~~~~~~~G~p~~~~~~~i~d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 149 (829)
.......++|+|+++++++++|+++. .++.|||+++|+.+++||++.+...+..+ .++||
T Consensus 353 ~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~----------------~~g~~ 416 (545)
T PRK07768 353 KGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQD----------------ADGWL 416 (545)
T ss_pred CCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCCccccc----------------CCCee
Confidence 00123457999999999999987663 45679999999999999998554332211 35799
Q ss_pred ecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEee--cCCceEEEEEEEEecCCCCchHH
Q 003331 150 RTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHK--HQGELVILVAFIVLKEKKTSSEI 227 (829)
Q Consensus 150 ~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 227 (829)
+|||+++++++|.++++||.||+||++|++|+|.+||+.|.++|.|.+++|++.. +...+..+++++...... .+.
T Consensus 417 ~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--~~~ 494 (545)
T PRK07768 417 DTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--DPA 494 (545)
T ss_pred eccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--cHH
Confidence 9999999999999999999999999999999999999999999999997766543 333344455555443321 222
Q ss_pred HHHHHHHHHHhcCCCC--CcCCeEEEeC--cccCCCCCCcchhhhccccc
Q 003331 228 FLSSIKSWVSSKLPLA--MIPNRFVFMD--SLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~~--~~p~~~~~~~--~lP~t~~GKi~r~~l~~~~~ 273 (829)
...++.+++++.++.. ..|..+.+++ .||+|++||++|+.|++.+.
T Consensus 495 ~~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 495 EVRRIRHQVAHEVVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 3345666666655433 5788888886 89999999999999987653
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=219.27 Aligned_cols=218 Identities=19% Similarity=0.295 Sum_probs=162.9
Q ss_pred cCccccccccccccccc----------cccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeec----
Q 003331 456 RNKRGFIQELWKVHMES----------CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECS---- 521 (829)
Q Consensus 456 ~~~~~~~~~~W~~~~~~----------~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~---- 521 (829)
..+...+++.|+++++. ...++|++ .+++||+++.++.|+++|+.||+++|+++........
T Consensus 158 ~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlv----vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 158 PDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLK----VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cccccCceEEEEEECCCccccccccccccccCCEE----ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 34455799999998873 35688999 4889999999999999999999999998765432110
Q ss_pred ----eE----------------EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee----------------eeeee
Q 003331 522 ----AA----------------VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV----------------KCQPV 565 (829)
Q Consensus 522 ----~~----------------~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~----------------~~~~~ 565 (829)
.. ...+++.||+++.|+.|+++|++||+++|.|..++.+ .+.|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~ 313 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPL 313 (764)
T ss_pred cccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCE
Confidence 00 1124468999999999999999999999998654432 35566
Q ss_pred eecCCCEEEEecc----------CCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCEEEE
Q 003331 566 VDAPRQLIWCGSH----------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 566 ~~~~~~~i~~gs~----------~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v 617 (829)
+.+ +.|++|+. +|.|++||.+||+++|+++.. .+.+....++.+.+.+|+
T Consensus 314 V~~--g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ 391 (764)
T TIGR03074 314 VAG--TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL 391 (764)
T ss_pred EEC--CEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE
Confidence 664 78888853 588999999999999998642 123456677777788888
Q ss_pred Eec------------------CCeEEEEEccCCCceEEEeeccCCcce------eeeeee---ecCC----EEEEEeeCC
Q 003331 618 AST------------------SGRLTAISVKALPFHTLWLHELEVPAF------ASLCIT---SANR----HVICCLVDG 666 (829)
Q Consensus 618 ~t~------------------~g~l~~~~~~~~~g~~~w~~~~~~~~~------~s~~~~---~~~~----~l~~~~~~g 666 (829)
++. .+.|+++|++| |+.+|+++...... ..+.+. ..++ .++.++.+|
T Consensus 392 ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T--Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 392 PMGNQTPDQWGGDRTPADEKYSSSLVALDATT--GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred eCCCccccccCCccccCcccccceEEEEeCCC--CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 652 25689999998 99999997632111 112221 1134 789999999
Q ss_pred eEEEEc-CCCCEEEEe
Q 003331 667 HVVALD-SSGSIIWRC 681 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~ 681 (829)
.++++| .+|+.+|..
T Consensus 470 ~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEEEECCCCCEEeec
Confidence 999999 999999964
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-22 Score=181.68 Aligned_cols=288 Identities=18% Similarity=0.285 Sum_probs=233.9
Q ss_pred cccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEE
Q 003331 461 FIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKI 540 (829)
Q Consensus 461 ~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l 540 (829)
+....|+.-++..+.++|.|+ ++.|.+|..+|.+|.++.+||...|.+..-+.+.+.+.+..+++.+|.|+.|+++
T Consensus 42 sG~~~We~ilg~RiE~sa~vv----gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~ 117 (354)
T KOG4649|consen 42 SGNLIWEAILGVRIECSAIVV----GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNF 117 (354)
T ss_pred CCcEEeehhhCceeeeeeEEE----CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcE
Confidence 456779999999999999994 7789999999999999999999999999888888899999999999999999999
Q ss_pred EEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC--eEEEeeccCCcccccceeecCCCEEEEE
Q 003331 541 YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY--RCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 541 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
|++|.++-..+|+.+.++.+..+|++.+.++.+|+++..|.+.+.+++++ ..+|.....++++++|..-. ..+.++
T Consensus 118 yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~--~sv~i~ 195 (354)
T KOG4649|consen 118 YALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG--SSVIIT 195 (354)
T ss_pred EEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceecc--ceEEEE
Confidence 99999999999999999999999999988899999999999999999998 89999999999999987765 788899
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeee-ecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCIT-SANRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSF 695 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~-~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~ 695 (829)
+-+|.+.+++.. |+.+|++....+++..++.+ +....+.++..+--.+.....|.++|..+.+. .++..|...+
T Consensus 196 ~VdG~l~~f~~s---G~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F 272 (354)
T KOG4649|consen 196 TVDGVLTSFDES---GRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRF 272 (354)
T ss_pred EeccEEEEEcCC---CcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcccce
Confidence 999999999943 89999999999999888876 44567777765443444446699999987642 2233331111
Q ss_pred -------cCCCeEEEEeeCCeEEEE---------eCCCCcEEE--EEecCCccccccccccccccccccccCCCcEEEEE
Q 003331 696 -------ALPSQVLICSRNGSIYSF---------EQESGNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 696 -------~~~~~i~~~t~~g~l~~~---------d~~tG~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
..+..+-..+.||.+..+ +...|++.. ..++.+.++++|.+- ++.+++|
T Consensus 273 ~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii-------------~grl~ig 339 (354)
T KOG4649|consen 273 DLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVII-------------DGRLLIG 339 (354)
T ss_pred eccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEE-------------ccEEEEE
Confidence 112234445566666666 777777754 346667777766543 6789999
Q ss_pred ccCCcEEEEEeec
Q 003331 758 TSSGSIHILRVNL 770 (829)
Q Consensus 758 ~~~G~l~~~d~~~ 770 (829)
..|.-+++||..+
T Consensus 340 cRDdYv~cldl~~ 352 (354)
T KOG4649|consen 340 CRDDYVRCLDLDT 352 (354)
T ss_pred EccCeEEEEeccc
Confidence 9999999999874
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=216.16 Aligned_cols=195 Identities=22% Similarity=0.241 Sum_probs=146.6
Q ss_pred cchhhhhcc--CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccc
Q 003331 4 VLPALQSQH--NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP 81 (829)
Q Consensus 4 l~~~l~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (829)
++|++.+.. ....++++|. ++||+++++++++.+.+. +...+++.||+||+++++.... +..
T Consensus 190 ~~P~~l~~l~~~~~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~--------------~~~ 253 (386)
T TIGR02372 190 GTPFIWEQLADLDYRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREA--------------PDD 253 (386)
T ss_pred ECcHHHHHHHhhCcCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccC--------------CCC
Confidence 345544332 1245678886 688999999999999886 2347999999999986543210 012
Q ss_pred cccccCCcEEEEecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC
Q 003331 82 IGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG 161 (829)
Q Consensus 82 ~G~p~~~~~~~i~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G 161 (829)
.|.|+++.++.+ + + |.- .| ...|++|||+++++++|
T Consensus 254 ~~~~~p~~~~~~-~-~------~~~--~g----------------------------------~~~~~~tgD~g~~d~~G 289 (386)
T TIGR02372 254 PFRLLPDLACFA-D-T------LSS--AG----------------------------------LARRLDLQDRLAWDKDG 289 (386)
T ss_pred CcccCCCccccC-C-C------ccC--CC----------------------------------ccceeecCceEEEcCCC
Confidence 356666655432 1 0 100 00 12368999999999999
Q ss_pred cEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCC
Q 003331 162 DLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241 (829)
Q Consensus 162 ~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~ 241 (829)
.++|+||+||+||+.|++|+|.+||++|.+||.|.+++|... +..+.+++++.+... .+...+++++++++++|
T Consensus 290 ~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~~-----g~~~~a~vv~~~~~~-~~~~~~~l~~~~~~~L~ 363 (386)
T TIGR02372 290 GFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRLD-----GRRLKAFIVVAEDAD-EAELEIELRATAARHLP 363 (386)
T ss_pred cEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEcC-----CceEEEEEEECCCCC-hHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999988632 246788888875432 23345689999999999
Q ss_pred CCCcCCeEEEeCcccCCCCCCcc
Q 003331 242 LAMIPNRFVFMDSLPMTSSGKVD 264 (829)
Q Consensus 242 ~~~~p~~~~~~~~lP~t~~GKi~ 264 (829)
.|++|..+.++++||+|++||++
T Consensus 364 ~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 364 APARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred CCCCCcEEEEcccCCCCCCCCcC
Confidence 99999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=204.36 Aligned_cols=307 Identities=17% Similarity=0.182 Sum_probs=205.0
Q ss_pred EECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--ee---------eeeeee
Q 003331 501 ADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VK---------CQPVVD 567 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~---------~~~~~~ 567 (829)
-|..+.++.|+++.+. .+.+++++. ++.||+++.++.|+++|++||+++|+++.... .. ..+.+.
T Consensus 42 ~nv~~L~~~W~~~~g~~~g~~stPvv~--~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~ 119 (527)
T TIGR03075 42 ENVKKLQPAWTFSLGKLRGQESQPLVV--DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY 119 (527)
T ss_pred hhhccceEEEEEECCCCCCcccCCEEE--CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE
Confidence 3455678889988764 245566665 45899999899999999999999999876432 11 112232
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCCCceE
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHT 636 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~ 636 (829)
++.||+++.++.|+++|.+||+++|++.... .+.++|++.+ +.|++++. +|.|+++|+++ |+.
T Consensus 120 --~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~--g~Vivg~~~~~~~~~G~v~AlD~~T--G~~ 193 (527)
T TIGR03075 120 --DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVK--GKVITGISGGEFGVRGYVTAYDAKT--GKL 193 (527)
T ss_pred --CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEEC--CEEEEeecccccCCCcEEEEEECCC--Cce
Confidence 4789999999999999999999999987532 3567788876 78999864 58899999998 999
Q ss_pred EEeeccCCcc--------------------------------eeeeeeeecCCEEEEEeeC-----C-----------eE
Q 003331 637 LWLHELEVPA--------------------------------FASLCITSANRHVICCLVD-----G-----------HV 668 (829)
Q Consensus 637 ~w~~~~~~~~--------------------------------~~s~~~~~~~~~l~~~~~~-----g-----------~i 668 (829)
+|++....+. -..+.+....+.+|+++.+ + .|
T Consensus 194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~ 273 (527)
T TIGR03075 194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSI 273 (527)
T ss_pred eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeE
Confidence 9997643211 1233555567899998732 2 68
Q ss_pred EEEc-CCCCEEEEeecCCc------eeecCccccc-CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCC------cc
Q 003331 669 VALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGD------PI 730 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~------~~ 730 (829)
+++| .||++.|+++.-.. ....+.+... .++ .|..++.+|.+|++|..||+++|..+... .+
T Consensus 274 vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~ 353 (527)
T TIGR03075 274 VARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGV 353 (527)
T ss_pred EEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccccc
Confidence 9999 99999999985321 1122222211 233 46688999999999999999974321110 00
Q ss_pred c---cc---------------------cccccccccccccccCCCcEEEEEccC--------------------------
Q 003331 731 T---AS---------------------AYIDEHLQLKLESCLSIDRLVCICTSS-------------------------- 760 (829)
Q Consensus 731 ~---~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------------- 760 (829)
. .. |...........+..+..+++|+.+.+
T Consensus 354 ~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (527)
T TIGR03075 354 DLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIK 433 (527)
T ss_pred CCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccC
Confidence 0 00 000000011111112234445444433
Q ss_pred -------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccccc
Q 003331 761 -------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 761 -------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
|.|.++|+.+| ++.|+.........+++. .++.+|+++.+|.|+|||.+||+..+
T Consensus 434 p~~~~~~g~l~AiD~~tG-------------k~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 434 PPPDDHMGSLIAWDPITG-------------KIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCCCCCceeEEEEeCCCC-------------ceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 45677777665 566666666555666655 56788888889999999999999765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=219.73 Aligned_cols=175 Identities=32% Similarity=0.496 Sum_probs=146.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++++.+.+.++++.+++.||+||++.+++........ .... ...++|.|+++++++|+
T Consensus 231 ~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~---~~~~-~~~~~G~~~~~~~~~i~ 306 (408)
T TIGR01733 231 PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADD---APRE-SPVPIGRPLANTRLYVL 306 (408)
T ss_pred hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccc---cCCc-cccccCcccCCceEEEE
Confidence 4578999999999999999999999999768999999999999877643322110 0001 26789999999999999
Q ss_pred cCCCC---CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDTV---KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~~---~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++. .+..|||+++|+.++.||+++++.+.+.|...+... .++..||+|||+++++++|.+++.||.||
T Consensus 307 ~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~-------~~~~~~~~TGDl~~~d~~g~~~~~gR~~~ 379 (408)
T TIGR01733 307 DDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAG-------GDGARLYRTGDLVRYLPDGNLEFLGRIDD 379 (408)
T ss_pred CCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCC-------CCCceEEECCceEEEcCCCCEEEeeccCC
Confidence 87753 456799999999999999999999998886644321 01234999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAV 200 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v 200 (829)
+|+++|++|+|.+||+.|..++.|.+|+|
T Consensus 380 ~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 380 QVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred EEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 99999999999999999999999998764
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-20 Score=185.18 Aligned_cols=220 Identities=28% Similarity=0.495 Sum_probs=167.0
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceE-EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAA-VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~-~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
+|.|.++|+.+|+.+|+..+......... ...+++.+|+++.++.|++||+.||+++|++...+.+...+...+ +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 57899999999999999987432211121 333567999999999999999999999999998777666665554 788
Q ss_pred EEeccCCeEEEEEcCCCeEEEee-ccCC---cc--cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKL-PCGG---SI--FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~-~~~~---~~--~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
|+++.++.++++|.++|+.+|+. .... .. ...+.+. ++.+++++.++.|+++|+++ |+.+|++....+..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~t--G~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKT--GKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTT--TEEEEEEESSTT-S
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCC--CcEEEEeecCCCCC
Confidence 99988889999999999999995 3321 11 1223333 58999999899999999998 99999998754331
Q ss_pred ---------eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 648 ---------ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 648 ---------~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
....+...++.+++++.++.++++| .+|+.+|+.. .......+ ...++.+|+++.++.|+++|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~---~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP---SVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp S--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE---ECCCTEEEEEETTTEEEEEETTT
T ss_pred CcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc---eeeCCEEEEEeCCCEEEEEECCC
Confidence 1122333456999999888888889 9999889766 33333322 34578999999999999999999
Q ss_pred CcEEEEE
Q 003331 718 GNLLWEY 724 (829)
Q Consensus 718 G~~~w~~ 724 (829)
|+.+|++
T Consensus 232 G~~~W~~ 238 (238)
T PF13360_consen 232 GKVVWQQ 238 (238)
T ss_dssp TEEEEEE
T ss_pred CCEEeEC
Confidence 9999974
|
... |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-21 Score=207.76 Aligned_cols=207 Identities=19% Similarity=0.273 Sum_probs=145.6
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc--CCcEEEEe
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI--SNCDIVLV 94 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~--~~~~~~i~ 94 (829)
..+||.+++|||++++++.+.+.+.| ++++++.||+||+++......|... ..|.++ +...++|+
T Consensus 194 ~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~tE~~~~~~~~~~~~~------------~~g~~~~~~~~~~eiv 260 (422)
T TIGR02155 194 QTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLSEVIGPGVAMECVET------------QDGLHIWEDHFYPEII 260 (422)
T ss_pred cCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccchhhcCCceeeccccc------------CCCceEecCeeEEEEE
Confidence 36899999999999999999999988 6899999999998532222222110 112233 34667788
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC-C-----cEE
Q 003331 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS-G-----DLV 164 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G-----~l~ 164 (829)
|+ ++ ++++.|||++.+. +...| ...||+|||+++++++ | .++
T Consensus 261 d~~~g~~v~~Ge~Gelvvt~~------------~~~~~----------------p~~ry~TGDl~~~~~~~Gr~~~~~~~ 312 (422)
T TIGR02155 261 DPHTGEVLPDGEEGELVFTTL------------TKEAL----------------PVIRYRTRDLTRLLPGTARTMRRMDR 312 (422)
T ss_pred CCCCCCCCCCCCeeEEEEecC------------Ccccc----------------ceeeEEcCcEEEEECCCCCccccccc
Confidence 85 33 3566799999863 12222 2458999999999876 4 468
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC------CchHHHHHHHHHHHHh
Q 003331 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK------TSSEIFLSSIKSWVSS 238 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~l~~~l~~ 238 (829)
+.||.||+||++|.+|+|.+||.+|.++|.|.....+..........+.+.++..... ...+.+.++|++.+++
T Consensus 313 i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 392 (422)
T TIGR02155 313 ITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPESYTLRLHEQASLLAGEIQHTIKQ 392 (422)
T ss_pred ccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecCcccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999844444444433333566666655322 1122345778888888
Q ss_pred cCCCCCcCCeEEEeCcccCCCCCCcchh
Q 003331 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYA 266 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~ 266 (829)
.+..+.. ..++.+++||+|+ ||+.|.
T Consensus 393 ~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 393 EVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred ccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 8876642 3344457999988 999864
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=192.94 Aligned_cols=222 Identities=17% Similarity=0.214 Sum_probs=157.4
Q ss_pred EEEEECCCCcEEEEEEcCC----------ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee-----
Q 003331 498 FICADAKRSSVLWEIKLEG----------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC----- 562 (829)
Q Consensus 498 l~~~d~~tg~~~w~~~~~~----------~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~----- 562 (829)
|..-|..+-++.|+++.++ ..+.++++. ++.+|+++.++.|+++|++||+++|+++.......
T Consensus 156 In~~NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvv--gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 156 INPDNVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKV--GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cCcccccCceEEEEEECCCccccccccccccccCCEEE--CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccc
Confidence 4444556677888887653 234566665 45899999999999999999999999876543211
Q ss_pred ----eeeee---------------cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC----------------cccccce
Q 003331 563 ----QPVVD---------------APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG----------------SIFGSPA 607 (829)
Q Consensus 563 ----~~~~~---------------~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~----------------~~~~~~~ 607 (829)
...+. ..++.||+++.|+.|+++|.+||+.+|.+..++ ...++|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~ 313 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPL 313 (764)
T ss_pred cccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCE
Confidence 00011 134689999999999999999999999875432 1356788
Q ss_pred eecCCCEEEEEec----------CCeEEEEEccCCCceEEEeeccCCcce------------------eeeeeeecCCEE
Q 003331 608 IDEVHDVLYVAST----------SGRLTAISVKALPFHTLWLHELEVPAF------------------ASLCITSANRHV 659 (829)
Q Consensus 608 ~~~~~~~l~v~t~----------~g~l~~~~~~~~~g~~~w~~~~~~~~~------------------~s~~~~~~~~~l 659 (829)
+.+ +.|++++. +|.|++||.+| |+.+|+.....+.. ....+....+.+
T Consensus 314 V~~--g~VIvG~~v~d~~~~~~~~G~I~A~Da~T--Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glv 389 (764)
T TIGR03074 314 VAG--TTVVIGGRVADNYSTDEPSGVIRAFDVNT--GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLV 389 (764)
T ss_pred EEC--CEEEEEecccccccccCCCcEEEEEECCC--CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeE
Confidence 876 89999853 68899999998 99999986532110 122344455677
Q ss_pred EEEe------------------eCCeEEEEc-CCCCEEEEeecCC-c-----eeecCcccc--cCCC----eEEEEeeCC
Q 003331 660 ICCL------------------VDGHVVALD-SSGSIIWRCRTGG-P-----IFAGPCTSF--ALPS----QVLICSRNG 708 (829)
Q Consensus 660 ~~~~------------------~~g~i~~~d-~~g~~~w~~~~~~-~-----~~~~~~~~~--~~~~----~i~~~t~~g 708 (829)
|+++ +.+.|+++| .||+++|+++.-. . .-+.+.+.. ..++ .|+.++.+|
T Consensus 390 y~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G 469 (764)
T TIGR03074 390 YLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQG 469 (764)
T ss_pred EEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCC
Confidence 7653 236789999 9999999998622 1 112222211 1144 699999999
Q ss_pred eEEEEeCCCCcEEEEEe
Q 003331 709 SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~ 725 (829)
.++++|.+||+++|..+
T Consensus 470 ~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 470 QIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEEECCCCCEEeece
Confidence 99999999999999743
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-18 Score=180.20 Aligned_cols=286 Identities=25% Similarity=0.422 Sum_probs=207.5
Q ss_pred cccccccccccccc---cccccce-EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEE
Q 003331 459 RGFIQELWKVHMES---CVDASPL-VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVV 532 (829)
Q Consensus 459 ~~~~~~~W~~~~~~---~~~~sp~-v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~ 532 (829)
..+..++|.+.+.+ ...+.|. +. .++++|+++.+|.|+++|+.+|+.+|+..... ....++....+ +.+|
T Consensus 40 ~~~g~~~W~~~~~~~~~~~~~~~~~~~---~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~-G~i~ 115 (370)
T COG1520 40 NTSGTLLWSVSLGSGGGGIYAGPAPAD---GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD-GKIY 115 (370)
T ss_pred ccCcceeeeeecccCccceEeccccEe---eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC-CeEE
Confidence 34567889876444 3455562 32 79999999999999999999999999887764 44455555554 5799
Q ss_pred EEEeCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC----Ccccccc
Q 003331 533 VGCYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG----GSIFGSP 606 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~----~~~~~~~ 606 (829)
+++.++.+||+|..+|+++|++...+ .....+++. ++.+|+++.+++++++|..+|+.+|.+... ....+++
T Consensus 116 ~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~--~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~ 193 (370)
T COG1520 116 VGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG--DGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSP 193 (370)
T ss_pred EecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc--CcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCc
Confidence 99999999999988999999999887 333334443 488999988899999999999999997663 2344556
Q ss_pred eeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCc----------ceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 607 AIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 607 ~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
.+. .+.+|+++. ++.++++|+++ |..+|..+.... ......+ ..++.++.+..++.++|+| .
T Consensus 194 ~~~--~~~vy~~~~~~~~~~~a~~~~~--G~~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~~~~~~~~g~~~~l~~~ 268 (370)
T COG1520 194 AIA--SGTVYVGSDGYDGILYALNAED--GTLKWSQKVSQTIGRTAISTTPAVDGGPV-YVDGGVYAGSYGGKLLCLDAD 268 (370)
T ss_pred eee--cceEEEecCCCcceEEEEEccC--CcEeeeeeeecccCcccccccccccCceE-EECCcEEEEecCCeEEEEEcC
Confidence 544 489999988 77899999988 999999532211 1111222 2345567788888999999 9
Q ss_pred CCCEEEEeecCCceeecCcc---cccCCCeEEEEeeC------CeEEEEeCCCCcE--EEEEecCCcccccccccccccc
Q 003331 674 SGSIIWRCRTGGPIFAGPCT---SFALPSQVLICSRN------GSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~---~~~~~~~i~~~t~~------g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
+|+.+|+++....+...+.. ....+|.+|+.... +.+++++...|.. +|.+..........
T Consensus 269 ~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~-------- 340 (370)
T COG1520 269 TGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLST-------- 340 (370)
T ss_pred CCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEeCCCceeccc--------
Confidence 99999999885322222221 12247788887642 4588999877877 89888766222222
Q ss_pred ccccccCCCcEEEEEccCCc-EEEEE
Q 003331 743 KLESCLSIDRLVCICTSSGS-IHILR 767 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~-l~~~d 767 (829)
....++.+|.+..++. ||.+.
T Consensus 341 ----~~~~~g~~y~~~~~~~~ly~~~ 362 (370)
T COG1520 341 ----VAGSDGTLYFGGDDGRGLYAFR 362 (370)
T ss_pred ----ceeccCeEEecccCCceEEEEc
Confidence 2234889999999987 87774
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=178.75 Aligned_cols=311 Identities=22% Similarity=0.347 Sum_probs=211.0
Q ss_pred CeEEEEecCC-CcEEEEECCCCcEEEEEEcCC---ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--e
Q 003331 486 DIYLFVGSHS-HKFICADAKRSSVLWEIKLEG---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--E 559 (829)
Q Consensus 486 ~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~ 559 (829)
.+..+..... ......+..+|+.+|.+.... .....+.....++.+|+++.+|.|+++|+++|+.+|+..... .
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~ 101 (370)
T COG1520 22 AGTDYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVA 101 (370)
T ss_pred CCceEEeeccCCceEEEcccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcce
Confidence 3355555432 335556667799999865332 233344223445789999999999999999999999887764 4
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-c-ccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-S-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+++.. +|.||+++.++.+||+|..+|+.+|++...+ . ....++.. ++.+|+.+.+|.++++|.++ |+.+
T Consensus 102 ~~~~~~~~~-~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~--~~~v~~~s~~g~~~al~~~t--G~~~ 176 (370)
T COG1520 102 QLSGPILGS-DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG--DGTVYVGTDDGHLYALNADT--GTLK 176 (370)
T ss_pred eccCceEEe-CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc--CcEEEEecCCCeEEEEEccC--CcEE
Confidence 555555553 6889999999999999999999999999887 3 33444444 48899998889999999998 9999
Q ss_pred EeeccCCc----ceeeeeeeecCCEEEEEee--CCeEEEEc-CCCCEEEEeecCCceee-----cCcc---cccCCCeEE
Q 003331 638 WLHELEVP----AFASLCITSANRHVICCLV--DGHVVALD-SSGSIIWRCRTGGPIFA-----GPCT---SFALPSQVL 702 (829)
Q Consensus 638 w~~~~~~~----~~~s~~~~~~~~~l~~~~~--~g~i~~~d-~~g~~~w~~~~~~~~~~-----~~~~---~~~~~~~i~ 702 (829)
|.++...+ ...++. ..++.+|+++. ++.++++| .+|...|..+....+-. .+.+ ....++.+|
T Consensus 177 W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~ 254 (370)
T COG1520 177 WTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVY 254 (370)
T ss_pred EEEecCCccccccccCce--eecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEE
Confidence 99876542 112222 46788999887 67899999 89999999543222111 1111 123456778
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC------CcEEEEEeecCccccc
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS------GSIHILRVNLDVTGKE 776 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------G~l~~~d~~~~~~~~~ 776 (829)
.++.+|.++|+|..+|+.+|+++.+..+...+..... ....++.+++.... +.+++++...+.
T Consensus 255 ~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~-------~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~---- 323 (370)
T COG1520 255 AGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTP-------VAGADGKVYIGFTDNDGRGSGSLYALADVPGG---- 323 (370)
T ss_pred EEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEe-------ecCCCccEEEEEeccccccccceEEEeccCCC----
Confidence 8889999999999999999999886222211111100 01124555555432 335666653221
Q ss_pred cccccccceeeeeeccCC-cccccceEECCEEEEeeeCCe-EEEEec
Q 003331 777 NQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDY-IYCIAL 821 (829)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~-l~~~d~ 821 (829)
....|.+...+ .....++..++.+|.+..++. ||++..
T Consensus 324 -------~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~~~ 363 (370)
T COG1520 324 -------TLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAFRD 363 (370)
T ss_pred -------eeEEEEEeCCCceecccceeccCeEEecccCCceEEEEcc
Confidence 11256666555 344566668999999999997 999853
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-18 Score=169.30 Aligned_cols=217 Identities=23% Similarity=0.390 Sum_probs=161.0
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeee-eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPV-VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~-~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
+|.|+++|+.+|+.+|++.........+. ....++.+|+++.++.|+++|+.+|+.+|++...+.....+...+ +.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~--~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG--GRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET--TEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc--ccc
Confidence 68899999999999999987332222220 111458899999999999999999999999998776666676665 999
Q ss_pred EEEecCCeEEEEEccCCCceEEEee-ccCCc---ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeec
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLH-ELEVP---AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAG 690 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~---~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~ 690 (829)
|+++.++.++++|..+ |+.+|+. ....+ ..........++.++++..++.++++| .+|+++|++....+....
T Consensus 80 ~v~~~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKT--GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEETTSEEEEEETTT--SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccceeeeEecccCC--cceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 9999889999999888 9999994 43311 122334444588999999899999999 999999999875432111
Q ss_pred C--------cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 691 P--------CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 691 ~--------~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
+ ......++.+|+.+.+|.+.++|..+|+.+|+.. .......+ ...++.+|+++.+|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~~-------------~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 158 PISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSLP-------------SVDGGTLYVTSSDGR 223 (238)
T ss_dssp -EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECECE-------------ECCCTEEEEEETTTE
T ss_pred ceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCCc-------------eeeCCEEEEEeCCCE
Confidence 0 0112235699999999988888999999999665 33322212 223889999999999
Q ss_pred EEEEEeecC
Q 003331 763 IHILRVNLD 771 (829)
Q Consensus 763 l~~~d~~~~ 771 (829)
|+++|..+|
T Consensus 224 l~~~d~~tG 232 (238)
T PF13360_consen 224 LYALDLKTG 232 (238)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 999999987
|
... |
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-20 Score=206.65 Aligned_cols=140 Identities=30% Similarity=0.507 Sum_probs=117.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++||+++++++.+++++.++.+++++.||+||++..++..... .......++|.|+++++++|+
T Consensus 274 ~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~-------~~~~~~~~~G~~~~~~~~~iv 346 (417)
T PF00501_consen 274 KDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPE-------DDIEKPGSVGKPLPGVEVKIV 346 (417)
T ss_dssp TTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETT-------THHSSTTSEBEESTTEEEEEE
T ss_pred cccccccccccccccCChhhccccccccccccceecccccccceeeeccccc-------ccccccccccccccccccccc
Confidence 4688899999999999999999999998666999999999999887643200 011145678999999999999
Q ss_pred cCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|++ + +.++.|||+|+|+.++.||+++|+.+.+.|.. ++||+|||+|+++++|.++++||.|
T Consensus 347 d~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~---------------~~~~~TGD~g~~d~~G~~~~~GR~~ 411 (417)
T PF00501_consen 347 DPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFID---------------DGWYRTGDLGRLDEDGYLYILGRSD 411 (417)
T ss_dssp CTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEET---------------TSEEEEEEEEEEETTSEEEEEEEGS
T ss_pred cccccccccccccccccccCCccceeeecccccccccccc---------------ccceecceEEEECCCCeEEEEEeeC
Confidence 987 3 35677999999999999999998888888852 4699999999999999999999999
Q ss_pred CcEEEC
Q 003331 171 RTIKIN 176 (829)
Q Consensus 171 d~ik~~ 176 (829)
|+||++
T Consensus 412 ~~i~~~ 417 (417)
T PF00501_consen 412 DMIKVR 417 (417)
T ss_dssp CEEEET
T ss_pred CEEEeC
Confidence 999985
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-19 Score=182.18 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=106.3
Q ss_pred CcceEecCceEEE-ccCCcEEEEeecCCcEEECC---eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC
Q 003331 145 SQTYFRTGDFARR-IQSGDLVFLGRKDRTIKING---QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE 220 (829)
Q Consensus 145 ~~~~~~TGDl~~~-~~~G~l~~~GR~dd~ik~~G---~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~ 220 (829)
.++||+|||+|++ |++|+|+|+||.| +| ++|+|. ||++|.+||+|.+|+|++.+++..++.++|+|++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 5689999999998 6999999999998 88 799999 999999999999999999999988999999998763
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 221 KKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 221 ~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
. ...++|+++++++||. ++|..++++++||+|++|||+|++|+....
T Consensus 281 ~-----~~~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~ 327 (365)
T PRK09188 281 P-----ADEKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM 327 (365)
T ss_pred C-----CCHHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence 2 1236899999999999 999999999999999999999999987653
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-18 Score=200.15 Aligned_cols=153 Identities=36% Similarity=0.628 Sum_probs=133.1
Q ss_pred CccEEEEecCCCCHhHHHHHHHhCC-CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 19 SLKLLVLSGEVLPLSMWDIISKLFP-NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 19 ~lr~i~~gGe~l~~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+|.+++|||+++..+...+....+ ...+.|.||+||++..++.+....... ...++|+|++++.++++|..
T Consensus 486 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~-------~~~piG~p~~n~~~~ild~~ 558 (642)
T COG1020 486 RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELE-------SRVPIGRPVANTQLYILDQG 558 (642)
T ss_pred cccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccC-------CCCCcceeeCCCeEEEECCC
Confidence 5999999999999999998888764 578999999999887777655443211 15799999999999999854
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
. +.+..||++|+|.++++||+++|+.|.++|... ++|+|||++++.++|.+.++||.|+|||
T Consensus 559 ~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~---------------~~y~tgD~~r~~~dg~~e~lgr~D~qvk 623 (642)
T COG1020 559 LRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIAL---------------RLYRTGDLARPLADGALEYLGRKDSQVK 623 (642)
T ss_pred CCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhc---------------cCccCCCeeeECCCCeEEEeccccceeE
Confidence 4 456679999999999999999999999999762 4899999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCC
Q 003331 175 INGQRMALEEIEHTLRGHP 193 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~ 193 (829)
++|+||++.|||..+.++|
T Consensus 624 i~g~Riel~eie~~l~~~~ 642 (642)
T COG1020 624 IRGFRIELGEIEAALAEQP 642 (642)
T ss_pred eceEecCcHHHHHHHhcCC
Confidence 9999999999999998875
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-15 Score=143.55 Aligned_cols=307 Identities=11% Similarity=0.057 Sum_probs=214.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
....+..|+.|..-+.|+..+|.+.-....+...+.+..++.++.+|..|..+|.|..|+..+|...|.+.....-....
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl 154 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWL 154 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEE
Confidence 45667778888889999999999776666666666788899999999999999999999999999999986332223334
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
...+...++++|+.||.+++|.+.++.....+..++.....-.+.+++.+++.+..+|.|.+||+++ |.++.+.....
T Consensus 155 ~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt--g~p~~~~~~~e 232 (399)
T KOG0296|consen 155 KWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT--GQPLHKITQAE 232 (399)
T ss_pred EecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCC--CceeEEecccc
Confidence 4555667888999999999999998665555554444434444555689999999999999999998 98888775322
Q ss_pred cce-eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc------------eeecCcccccCCCeEEEEeeCCeE
Q 003331 645 PAF-ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP------------IFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 645 ~~~-~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~------------~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
... ....+...+..++.|+.++.++..+ .+|+.+.......+ +-+.|..... ....+|+.||+|
T Consensus 233 ~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l--pL~A~G~vdG~i 310 (399)
T KOG0296|consen 233 GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKL--PLAACGSVDGTI 310 (399)
T ss_pred cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccccc--chhhcccccceE
Confidence 111 1122333456777788888888888 78888766542111 1111111111 134567889999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL 790 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 790 (829)
..||..+-+++.......++....+.. ..+++.++.+|.|+.||+++| +....|
T Consensus 311 ~iyD~a~~~~R~~c~he~~V~~l~w~~-------------t~~l~t~c~~g~v~~wDaRtG-------------~l~~~y 364 (399)
T KOG0296|consen 311 AIYDLAASTLRHICEHEDGVTKLKWLN-------------TDYLLTACANGKVRQWDARTG-------------QLKFTY 364 (399)
T ss_pred EEEecccchhheeccCCCceEEEEEcC-------------cchheeeccCceEEeeecccc-------------ceEEEE
Confidence 999999888887777777665443332 468899999999999999988 333333
Q ss_pred ccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003331 791 ELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 791 ~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
.-+..-+-..++ ..+.+..++.|+....|+.
T Consensus 365 ~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 322221111111 4567777888888877764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-15 Score=146.15 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=196.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+..+.++...+..|+.|..-+.|+..+|...-....+........++.++.+|.+|..+|.|..|...+|...|++....
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 44555555678888889999999999999776666566666666777778889999999999999999999999986333
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
.-+.-....+....++.|+.+|.++.|.+.+ +.....+..+........+.+++++++.+..+|.|.+|| .+|.++.
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~--~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPS--QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCC--cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 2222233444457888999999999999887 444444444444445667888999999999999999999 9999988
Q ss_pred EeecCCceeecCcccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccc-cccccccccCCCcEEEEE
Q 003331 680 RCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEH-LQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 757 (829)
+...... .-.+++.. .....+..|+.++.++..+..+|+++...+...+ ...+..... -.+........=.+.++|
T Consensus 227 ~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~-~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 227 KITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVP-ELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred Eeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCc-cccccchhhhhhhhhcccccccchhhcc
Confidence 7663322 22333332 2345678888899999999999999876542111 111111000 000001111123467889
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+-||+|.+||...... +.....+..+.. .... ..+|+.+|.+|.|+.||..+|.++
T Consensus 305 ~vdG~i~iyD~a~~~~-------------R~~c~he~~V~~-l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTL-------------RHICEHEDGVTK-LKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred cccceEEEEecccchh-------------heeccCCCceEE-EEEcCcchheeeccCceEEeeeccccceE
Confidence 9999999999885422 222223322222 2222 368999999999999999999865
|
|
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=165.56 Aligned_cols=243 Identities=21% Similarity=0.234 Sum_probs=174.8
Q ss_pred chhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccc
Q 003331 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL 84 (829)
Q Consensus 5 ~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 84 (829)
.++|......+.-+.-++-+.-|..+.+++|+.|.++|...+|.+.||+||..+....+.. ....+|+
T Consensus 342 cRYLl~~p~~~~er~HkVRla~GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~~N~d~------------~vGA~G~ 409 (649)
T KOG1179|consen 342 CRYLLNQPPSPEERQHKVRLAYGNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNLVNYDG------------RVGACGF 409 (649)
T ss_pred HHHHHcCCCChhhcCceEEEEecCCCCchHHHHHHHHcCCCeEEEEeccccCcceeeeecC------------ccccccc
Confidence 3445544332223333444556888999999999999977789999999998754443321 1111221
Q ss_pred ------ccCCcEEEEecC---------CC-----CCCCCCeEEEc----cc-cccccccCCCCCCcccccccCCcccccC
Q 003331 85 ------PISNCDIVLVES---------DT-----VKPDEGEIYAG----GL-CLSNGYFSESTFMPSEYVKLHNNSICNC 139 (829)
Q Consensus 85 ------p~~~~~~~i~d~---------~~-----~~~~~Gel~i~----g~-~~~~gy~~~~~~~~~~f~~~~~~~~~~~ 139 (829)
-+-.+++.-+|+ ++ ++|++|.|+-. .| .-+.||.+..+.|.++...+-+.
T Consensus 410 ~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFk----- 484 (649)
T KOG1179|consen 410 MSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFK----- 484 (649)
T ss_pred hhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhc-----
Confidence 122233322332 22 45677755321 22 22789999888888877665443
Q ss_pred cCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCC-ceEEEEEEEEe
Q 003331 140 SVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQG-ELVILVAFIVL 218 (829)
Q Consensus 140 ~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~-~~~~~~~~v~~ 218 (829)
.++-||.|||+-.+|+.|++||..|..|.+.-.|+||+..|+|.+|.....++++.|.+..-+. ++..=.|.|+.
T Consensus 485 ----kGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~ 560 (649)
T KOG1179|consen 485 ----KGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVL 560 (649)
T ss_pred ----cCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEe
Confidence 3789999999999999999999999999999999999999999999999999999997754332 22233444444
Q ss_pred cCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccc
Q 003331 219 KEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 219 ~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~ 271 (829)
.+. .+...+.+-+++++.||+|.+|..+.+.+++++|.+=|..+..|.+.
T Consensus 561 ~p~---~~~d~~~l~~~l~~~LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 561 DPT---TEKDLEKLYQHLRENLPSYARPRFLRLQDEIEKTGTFKLQKTELQKE 610 (649)
T ss_pred cCc---ccchHHHHHHHHHhhCccccchHHHHHHhhhhcccchhhHHHHHHHc
Confidence 433 33456788999999999999999999999999999999999998764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-14 Score=138.99 Aligned_cols=272 Identities=14% Similarity=0.086 Sum_probs=188.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE-EecCCeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVK 561 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~ 561 (829)
...+..|..|+.|.++..||..|..+..+.+.+..-+.+...++|++.|..|+.||.|.+||+++|+++-. +..+....
T Consensus 124 sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~I 203 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWI 203 (480)
T ss_pred cCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccce
Confidence 34567899999999999999999999888888888778899999999999999999999999999987632 22222222
Q ss_pred eeeee-----ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 562 CQPVV-----DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 562 ~~~~~-----~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
....+ .+....+..++.||.++.||...|+++.....+....... -.+..+.+|.++.|++|..|+... |..
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCv-rwGG~gliySgS~DrtIkvw~a~d--G~~ 280 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCV-RWGGEGLIYSGSQDRTIKVWRALD--GKL 280 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEE-EEcCCceEEecCCCceEEEEEccc--hhH
Confidence 22222 2234567778889999999999999888776554433333 334468999999999999999776 654
Q ss_pred EEeeccCCcceeee------------------------------------eeeecCCEEEEEeeCCeEEEEc--CCCCEE
Q 003331 637 LWLHELEVPAFASL------------------------------------CITSANRHVICCLVDGHVVALD--SSGSII 678 (829)
Q Consensus 637 ~w~~~~~~~~~~s~------------------------------------~~~~~~~~l~~~~~~g~i~~~d--~~g~~~ 678 (829)
.-.++.+..-.... +.-..+.+++.|+.+..++.|+ .+.+.+
T Consensus 281 ~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi 360 (480)
T KOG0271|consen 281 CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI 360 (480)
T ss_pred HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch
Confidence 43332221111111 1112245789999999999999 455455
Q ss_pred EEeecCCceeecCcccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCCcEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
-+........... .+..|+ .|..++.|..|..||-.+|+++-.+.. -..++......+ ..++..
T Consensus 361 ~rmtgHq~lVn~V--~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD------------sRLlVS 426 (480)
T KOG0271|consen 361 TRMTGHQALVNHV--SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD------------SRLLVS 426 (480)
T ss_pred hhhhchhhheeeE--EECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC------------ccEEEE
Confidence 4433222221111 112233 456678899999999999999887763 334444433332 678899
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.|.+|.+|+.++.
T Consensus 427 ~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTK 441 (480)
T ss_pred cCCCceEEEEEeeee
Confidence 999999999999854
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=142.72 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=186.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+++++.+|.+..||..+++.......+........+.+++..+++++.++.++.||..+++.+..+..+.......
T Consensus 20 ~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 99 (289)
T cd00200 20 DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV 99 (289)
T ss_pred CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEE
Confidence 45788888889999999999888777666555444456677777789999999999999999888877776554333444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+++..+++++.++.++.||..+++....+..+........+.+++..+++++.+|.+..||..+ ++.+..+....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--~~~~~~~~~~~ 177 (289)
T cd00200 100 AFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT--GKCVATLTGHT 177 (289)
T ss_pred EEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--cccceeEecCc
Confidence 4555556666676699999999998988887765444445555665556666666689999999886 66666555444
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-CCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
.......+.+++..+++++.++.+..|| .+++.+..+.. ...+.... ...++.+++++ .+|.++.||..+++..
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA---FSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE---EcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 3445566666777899998899999999 77777665532 22332221 22234555444 4999999999988887
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
..+............. ..+..+++++.+|.+.+|+
T Consensus 255 ~~~~~~~~~i~~~~~~-----------~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 255 QTLSGHTNSVTSLAWS-----------PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEccccCCcEEEEEEC-----------CCCCEEEEecCCCeEEecC
Confidence 6665332221111111 2267899999999998874
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.7e-14 Score=128.56 Aligned_cols=243 Identities=14% Similarity=0.128 Sum_probs=184.6
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++-++++......+..|..||+..|.++-++..++.-...+..+.|...+..+..|..++.||.+||++..++..+..-.
T Consensus 25 yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqV 104 (307)
T KOG0316|consen 25 YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQV 104 (307)
T ss_pred EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeeccccccee
Confidence 34456777777778899999999999999988877655556666677788888889999999999999999888776655
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
....+.++...++.|+.|..+.+||-.+.. ++..+........++.+.+ ..|+.|+.||++..||+.. |...-.
T Consensus 105 NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--heIvaGS~DGtvRtydiR~--G~l~sD 180 (307)
T KOG0316|consen 105 NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEIVAGSVDGTVRTYDIRK--GTLSSD 180 (307)
T ss_pred eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--cEEEeeccCCcEEEEEeec--ceeehh
Confidence 556677677888899999999999987653 3443333333344444443 7889999999999999997 765432
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
+ .+.| ..+..++.+++...+++-++.+..+| .+|+++-.+....+ -+...|.....+-.++.|++||.+|.||..+
T Consensus 181 y-~g~p-it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 181 Y-FGHP-ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred h-cCCc-ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 2 2333 36777888899999999999999999 89999866654332 2333343344566789999999999999999
Q ss_pred CcEEEEEecCCcc
Q 003331 718 GNLLWEYSVGDPI 730 (829)
Q Consensus 718 G~~~w~~~~~~~~ 730 (829)
+.++-++..++.+
T Consensus 259 ~~~~sk~~~~~~v 271 (307)
T KOG0316|consen 259 ETQISKLSVVSTV 271 (307)
T ss_pred ceeeeeeccCCce
Confidence 9999888877665
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-13 Score=125.52 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=196.6
Q ss_pred CeEEEEecCCCcEEEEEC-----CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 486 DIYLFVGSHSHKFICADA-----KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~-----~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.+.++.++.|..+..|++ +.|.+...+..+........++.++.+.+.+++|+.+..||+++|+...+|..+...
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d 107 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD 107 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc
Confidence 345666666776777765 456777777777777778888999999999999999999999999998888888877
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecC--CCEEEEEecCCeEEEEEccCCCceE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
..+..++.++..|..|+.|..+..||.. |.+..+..-+ ....+...+.++ +-+|.-+++|+.+.+||+++ .+.
T Consensus 108 Vlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~--~~l 184 (315)
T KOG0279|consen 108 VLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN--CQL 184 (315)
T ss_pred eEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC--cch
Confidence 7777788888899999999999999966 4555555443 334445555554 34677788999999999997 555
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
...+..+........+++++.....|..+|.++.+| ..|+.+..+.....+.+..+ ..+....+...+-.|..||.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~f---spnrywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCF---SPNRYWLCAATATSIKIWDL 261 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEe---cCCceeEeeccCCceEEEec
Confidence 555555555567778888888888899999999999 88888887776666655432 22333333344556999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++++.+.+++....-.+....+. .. ..-+...++..++.|..++.|..|...
T Consensus 262 ~~~~~v~~l~~d~~g~s~~~~~~-~c-lslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 262 ESKAVVEELKLDGIGPSSKAGDP-IC-LSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cchhhhhhccccccccccccCCc-EE-EEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99998876654322111110000 00 000113348899999999999988653
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=158.19 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=100.0
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
.++||.+++|||++++++.+.+.+.+ +++++|.||+||++..+ .|... .....+.+.+.++|+|+
T Consensus 203 ~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~TE~~~~~---~c~~~-----------~g~h~~~d~~~vEIvDp 267 (445)
T TIGR03335 203 ESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGSTEGTMCG---ECQAV-----------AGLHVPEDLVHLDVYDP 267 (445)
T ss_pred cCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChhhhhheE---EecCC-----------CCccccCCceEEEEEcC
Confidence 46899999999999999999998888 78999999999986221 22110 01122334577889997
Q ss_pred CC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc-C----Cc----E
Q 003331 97 DT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ-S----GD----L 163 (829)
Q Consensus 97 ~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~-~----G~----l 163 (829)
++ ++|+.|||++.... +........+ --|+|||++++.. + |. +
T Consensus 268 ~~~~~vp~Ge~GELvvT~L~------~~~~r~~~Pl------------------iRYrtgD~~~~~~~~~C~CGr~~~r~ 323 (445)
T TIGR03335 268 RHQRFLPDGECGRIVLTTLL------KPGERCGSLL------------------INYDTEDTTVVISRDRCPCGRTHMRI 323 (445)
T ss_pred CCCCCCcCCCceEEEEEecC------CCCccCCceE------------------EEeecCceEEEecCCCCCCCCCccee
Confidence 75 35678999997642 1000001111 2399999999732 2 32 4
Q ss_pred EEEeecCCcEEECCeeeChHHHHHHHhCC---CCee
Q 003331 164 VFLGRKDRTIKINGQRMALEEIEHTLRGH---PDVV 196 (829)
Q Consensus 164 ~~~GR~dd~ik~~G~~i~~~~iE~~l~~~---~~v~ 196 (829)
...||.||+++++|.+|+|.+||++|.++ +++.
T Consensus 324 ~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~ 359 (445)
T TIGR03335 324 LNPEREAETIWISGVPFNRVDVERAVFQRENMDSLT 359 (445)
T ss_pred CCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCC
Confidence 45799999999999999999999999994 5554
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-13 Score=123.56 Aligned_cols=268 Identities=10% Similarity=-0.016 Sum_probs=198.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----cE--EEEEecCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----DI--YWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~~--~w~~~~~~ 558 (829)
+..++..+|.||.+..||..|......++++..-+-+.++++.++.|..|..|+..-.|++.+- .. ...+..+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt 145 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHT 145 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCcc
Confidence 5678888999999999999998877778888776668889999999999999987666766533 22 23344444
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
...+..-+.+ ++.|+++|.|.+...||+++|+.+-.+..+..-.-+..+.+ +.+..+.|+.|+.-+.||... |...
T Consensus 146 gylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~--~~c~ 222 (343)
T KOG0286|consen 146 GYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS--GQCV 222 (343)
T ss_pred ceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC--ccee
Confidence 4455544543 78899999999999999999999988876654444444444 456677788899999999998 8888
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccC-CCeEEEEeeCCeEEEEeC
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~ 715 (829)
..+..+.....+..+.+++..+..|+.|+....|| +....+-.++....+.....+.+.. +..++.|..|.+...||.
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 88877777778889999999999999999999999 7777666665433322222222333 345677788899999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
-.|+..-.+..+.+-.+..-+. +++.-+..|+.|..|.+|
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s-----------~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVS-----------PDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cccceEEEeeccCCeeEEEEEC-----------CCCcEEEecchhHheeec
Confidence 8888877666554443333222 236678888888888877
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-12 Score=135.90 Aligned_cols=272 Identities=18% Similarity=0.172 Sum_probs=179.8
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..+..+.++++.+++++.++.++.||..+++.......+........+.+++..+++++.++.++.||..+++.+..+..
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEec
Confidence 44667777778899999999999999999887776665544443455555567899999999999999998877777665
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
.........+.+++..+++++.+|.+..||..+ ++................+.+++..++.++.++.+..|| .+++.
T Consensus 92 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 169 (289)
T cd00200 92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169 (289)
T ss_pred cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc
Confidence 544444455555445556666599999999986 676666654433345556665666666666689999999 77777
Q ss_pred EEEeecCC-ceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCC-ccccccccccccccccccccCCCcEE
Q 003331 678 IWRCRTGG-PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGD-PITASAYIDEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 678 ~w~~~~~~-~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (829)
+..+.... .+... ....+ ..+++++.+|.+..||..+++.+..+.... .+.... .. .++..+
T Consensus 170 ~~~~~~~~~~i~~~---~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~-----------~~~~~~ 234 (289)
T cd00200 170 VATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FS-----------PDGYLL 234 (289)
T ss_pred ceeEecCccccceE---EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE-Ec-----------CCCcEE
Confidence 66655332 22211 12223 378888889999999999888776653222 222211 11 125566
Q ss_pred EEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE--CCEEEEeeeCCeEEEEe
Q 003331 755 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI--GGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 755 ~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~l~vg~~~g~l~~~d 820 (829)
++++.+|.|++||..++ +....+......+...... +..++.++.+|.+..|+
T Consensus 235 ~~~~~~~~i~i~~~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 235 ASGSEDGTIRVWDLRTG-------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEcCCCcEEEEEcCCc-------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66666999999998754 1122222111222222232 36888889999998875
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.6e-13 Score=120.85 Aligned_cols=265 Identities=11% Similarity=0.103 Sum_probs=186.7
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVV 566 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~ 566 (829)
|..++.|++|..|.+.||+...++...+.-+....++++++.+.+++ ...|..||..+++. +-+|+.+.....+.-|
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 66778999999999999999999888877677788889988888887 45699999988764 6777777555555567
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
..++..+|+|+.||.+..||...-.+...++.. ......++.++...++++..+|.|.+||+.+......-.-+ ....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~ 169 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTS 169 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcc
Confidence 767889999999999999999986665555544 45566777887888999999999999998862221111111 1123
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE------EEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSII------WRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~------w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+..+..++..+..++..|..|+|+ .++... .+++.. +.+.... ..-....|..++.|.+++.|+.++-
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~--lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL--LSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE--ECCCCcEEEeecCCceEEEEecCCc
Confidence 35667777888999999999999999 544322 222221 1222221 1112345667788999999998765
Q ss_pred cEEEEEecCCc--c-ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDP--I-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+.-+..+... - .-..+.. ++.+|+.++.|+...+|+...+
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~------------dg~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSA------------DGEYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred -eeeEEEeecCCceEEeeeecc------------CccEEEecCCCCceeecccccC
Confidence 3323222222 2 2222222 2889999999999999998866
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=146.24 Aligned_cols=216 Identities=20% Similarity=0.234 Sum_probs=143.3
Q ss_pred chhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccc
Q 003331 5 LPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGL 84 (829)
Q Consensus 5 ~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 84 (829)
...+.+......-.+||.+++|+|+++++..+.+.+.+ ++..++.||.||..+.. ...|.... -+..
T Consensus 197 ae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGltE~~g~g-~~eC~~~~-----------glhi 263 (438)
T COG1541 197 AEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLTEGFGPG-AGECTERN-----------GLHI 263 (438)
T ss_pred HHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccccccCCc-cccccccc-----------CCCc
Confidence 33444444455667999999999999999999999999 88999999999986543 23343211 1222
Q ss_pred ccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 85 PISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 85 p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
.-+...+.|+|++. +.+..|||++.... + ....+ --|+|||++...++
T Consensus 264 ~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~-------~---~~~Pl------------------IRYrtgDit~i~~~ 315 (438)
T COG1541 264 WEDHFIFEIVDPETGEQLPDGERGELVITTLT-------K---EGMPL------------------IRYRTGDITVILSD 315 (438)
T ss_pred chhhceeeeecCCcCccCCCCCeeEEEEEecc-------c---cCcce------------------EEEEcCCeeEeccc
Confidence 33467778888765 34556999886532 1 11112 23999999998653
Q ss_pred ----Cc-----EEEEeecCCcEEECCeeeChHHHHHHHhCCCCee-EEEEEEeecCCceEEEEEEEEecCCCCchHHHH-
Q 003331 161 ----GD-----LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVV-DTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL- 229 (829)
Q Consensus 161 ----G~-----l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~-~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 229 (829)
|. -.+.||.||+++++|.+|+|..||++|.+.+.+. +-.++... .+....+.+-|+..+.........
T Consensus 316 ~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~~~~~~~~~~ 394 (438)
T COG1541 316 PCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENEAEELEDERR 394 (438)
T ss_pred CCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCcccchHHHHH
Confidence 43 4689999999999999999999999999999998 44444333 333445666676665322222111
Q ss_pred --HHHHHHHHhcCCCCCcCCeEEEeCcccCCCCCCcc
Q 003331 230 --SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264 (829)
Q Consensus 230 --~~l~~~l~~~l~~~~~p~~~~~~~~lP~t~~GKi~ 264 (829)
..+...+...+.. .+-..++.+.++|+|.. |..
T Consensus 395 ~~~~l~~~~~~~~~~-~~~v~~v~~g~l~r~~~-K~k 429 (438)
T COG1541 395 LAKKLIKNIKSELGV-RVEVELVEPGELPRTEG-KAK 429 (438)
T ss_pred HHHHHHHHHHhhcCC-ceEEEEEeccceecccC-cee
Confidence 3444444444432 22245566678999875 544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-13 Score=121.26 Aligned_cols=234 Identities=17% Similarity=0.197 Sum_probs=170.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+-+..+|++......|..|..||+..|.++.+|..++ ++....... ++..+..++.|..++.||..||+...++..+
T Consensus 22 avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 22 AVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred EEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccc
Confidence 44566678888888889999999999999999998766 444443333 4455666777889999999999999999888
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
........+.++...++.|+.|..+.+||-...+-+++..+........++.+ .+..|..|+.||++..|| ..|.+.
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~ 178 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLS 178 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceee
Confidence 77777777777667788899999999999887556666555444443444443 577899999999999999 888765
Q ss_pred EEeecCCceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccc-cCCCcEEEE
Q 003331 679 WRCRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESC-LSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 756 (829)
-.+ .+.++.+. ....+ +-..+++.++.|..+|..||+++-.|+...+... ....+ ..++..++.
T Consensus 179 sDy-~g~pit~v---s~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey----------kldc~l~qsdthV~s 244 (307)
T KOG0316|consen 179 SDY-FGHPITSV---SFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY----------KLDCCLNQSDTHVFS 244 (307)
T ss_pred hhh-cCCcceeE---EecCCCCEEEEeeccceeeecccchhHHHHHhccccccee----------eeeeeecccceeEEe
Confidence 322 23343332 23334 4577889999999999999999866654332211 00111 123778999
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.||.+|.||+-.+
T Consensus 245 gSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDE 259 (307)
T ss_pred ccCCceEEEEEeccc
Confidence 999999999999765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-12 Score=134.29 Aligned_cols=286 Identities=14% Similarity=0.106 Sum_probs=204.9
Q ss_pred eCCCeEEEEecCC-CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 483 KDSDIYLFVGSHS-HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 483 ~d~~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
+..++.|.+|+.. |.+..|+.++-..+-+...+..-..+..+++||..+..|+.||.|..||..+|-+.-+|.-+..-.
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V 395 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV 395 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCce
Confidence 3346778887754 778889887766665555554445688899999999999999999999999999999988777666
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc-ccceeecCCCEEEEEecCC-eEEEEEccCCCceEEEe
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF-GSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWL 639 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~ 639 (829)
....+...++.++..+.||++++||.+.++...++..+.+.. +...+++.+..|.+|+.+. .|++|+.++ |+.+-.
T Consensus 396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT--GqllDi 473 (893)
T KOG0291|consen 396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT--GQLLDI 473 (893)
T ss_pred EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec--Ceeeeh
Confidence 666677778889999999999999999999888888776643 4455666667777777664 588999998 998887
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc--CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD--SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d--~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
...++.......+.+.+..++.+++|.+|..|| .....+-.++....+....+-+ .+..|.+.|.||.|..||.+.
T Consensus 474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC--CCCeEEEEEecceEEEEEhhh
Confidence 777766667778888899999999999999999 3222333344333333332211 245799999999999999988
Q ss_pred CcEEEEEecCCcccccccc---------ccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 718 GNLLWEYSVGDPITASAYI---------DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
+...-..+........-.. .....+..-....++..|.+|.....|.+|+..++.
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 7766443321111000000 000111111124458889999999999999998764
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-12 Score=135.86 Aligned_cols=219 Identities=17% Similarity=0.296 Sum_probs=149.4
Q ss_pred cccCcccccccccccccccc----------ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee----
Q 003331 454 VPRNKRGFIQELWKVHMESC----------VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---- 519 (829)
Q Consensus 454 ~p~~~~~~~~~~W~~~~~~~----------~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---- 519 (829)
+...+..++++.|++.++.- -..+|+.+ ++.+|+.+..+.++++|+.||+.+|+++......
T Consensus 176 In~DNV~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkv----gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~ 251 (773)
T COG4993 176 INADNVGNLQVAWTYRTGDVKQPEDPGETTNEVTPLKV----GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQ 251 (773)
T ss_pred cChhhhhccceeEEEecCcccCCCCcccccccccceEE----CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccc
Confidence 34445668999999998742 14488884 8899999988899999999999999986432110
Q ss_pred --eceEE----------eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee----------------eeeeeecCCC
Q 003331 520 --CSAAV----------LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK----------------CQPVVDAPRQ 571 (829)
Q Consensus 520 --~~~~~----------~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~----------------~~~~~~~~~~ 571 (829)
++-.+ +++..+||..+.|.+|.++|++||++.|.|..++... +.+.+. ..+
T Consensus 252 ~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~-~~~ 330 (773)
T COG4993 252 HQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFG-VKG 330 (773)
T ss_pred cccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCccc-cee
Confidence 01111 1233469999999999999999999999987655321 112221 223
Q ss_pred EEEEecc---------CCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCEEEEEecC---
Q 003331 572 LIWCGSH---------DHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDVLYVASTS--- 621 (829)
Q Consensus 572 ~i~~gs~---------~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~l~v~t~~--- 621 (829)
.|+.++- .+.+..+|..+|+.+|..+.+ .+.+++..++.+-+.||+...+
T Consensus 331 ~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~p 410 (773)
T COG4993 331 IVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTP 410 (773)
T ss_pred EEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCCh
Confidence 3333321 256788999999999987543 2456777788878889986533
Q ss_pred ---------------CeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCC---EEEEEeeCCeEEEEc-C
Q 003331 622 ---------------GRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANR---HVICCLVDGHVVALD-S 673 (829)
Q Consensus 622 ---------------g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~---~l~~~~~~g~i~~~d-~ 673 (829)
..+.++|+++ |+..|.++...... .-..+..+++ .++..+.+|.+|++| .
T Consensus 411 d~wg~trtp~dekysssivAlD~~T--G~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRr 488 (773)
T COG4993 411 DTWGGTRTPGDEKYSSSIVALDATT--GKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRR 488 (773)
T ss_pred hhccCCCCcccccccceeEEecCCC--cceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcC
Confidence 3588999998 99999987532211 1111222332 345567889999999 9
Q ss_pred CCCEEE
Q 003331 674 SGSIIW 679 (829)
Q Consensus 674 ~g~~~w 679 (829)
+|+++-
T Consensus 489 tGe~lv 494 (773)
T COG4993 489 TGELLV 494 (773)
T ss_pred CCcccc
Confidence 998864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=125.81 Aligned_cols=278 Identities=10% Similarity=0.077 Sum_probs=189.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+..|+.|+.+..||+.||++.-+...+-...-...++.---++|.+..|+.|.|||++..+++..|..+-....+.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 56778888999999999999999987766554444456677666789999999999999999999988776543333344
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+....|++|+.|..++.||..+...+..+..+.....+..+.+-+..|+.++-|+.|..||... |+..-......
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a--gkt~~tlt~hk 319 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA--GKTMITLTHHK 319 (460)
T ss_pred eccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc--CceeEeeeccc
Confidence 4455567899999999999999999988888876666666666665568899999999999999998 87766655555
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
......+..+... .+.......+.+++ ..|..+-.++....+... +....|+.++.|+.+|.+..||.++|--.-.
T Consensus 320 ksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iint--l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 320 KSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINT--LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeee--eeeccCceEEEcCCceEEEEEecCcCccccc
Confidence 4444444444333 33333345688888 777776554433333332 2234577889999999999999998853221
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
.. .+......+...-++.......+..++.+..|.+|..|..+.
T Consensus 397 ~~---t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 397 GQ---TIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc---ccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 11 111111111100111111122377888888888888886553
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-13 Score=128.96 Aligned_cols=287 Identities=11% Similarity=0.046 Sum_probs=187.6
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..++..+.+..+++++..++.|+.|.++..||+.|-.+..+...+.....+...++++..|..|+.+|.|..||+++|+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~ 190 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ 190 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence 34445555678888899999999999999999999999998888888777777888899999999999999999999998
Q ss_pred EEEee-ccCCcccccce-----eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC
Q 003331 592 CVYKL-PCGGSIFGSPA-----IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 592 ~~w~~-~~~~~~~~~~~-----~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
.+-+. ..+...+...+ ..+.-.++..++.||.+.+||..- |..+.....+.... +..-.-.++.+|.|+.|
T Consensus 191 ~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~--~~~~~~lsgHT~~V-TCvrwGG~gliySgS~D 267 (480)
T KOG0271|consen 191 QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL--GTCVRTLSGHTASV-TCVRWGGEGLIYSGSQD 267 (480)
T ss_pred cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC--ceEEEEeccCccce-EEEEEcCCceEEecCCC
Confidence 65332 11111111111 222234667777899999999886 76666554443322 22223347899999999
Q ss_pred CeEEEEc-CCCCEEEEeecCCc------------eeecCc-----------------------ccccCCCeEEEEeeCCe
Q 003331 666 GHVVALD-SSGSIIWRCRTGGP------------IFAGPC-----------------------TSFALPSQVLICSRNGS 709 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~~~~~~------------~~~~~~-----------------------~~~~~~~~i~~~t~~g~ 709 (829)
++|.+|+ .+|+..-.++.... ....++ +..+....+..|+.|..
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 9999999 77766433321110 000000 11122356899999999
Q ss_pred EEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeee
Q 003331 710 IYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA 788 (829)
Q Consensus 710 l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 788 (829)
++.|++..-+ .+-+...+........ ..+++.+|+.++-|..|..||..+|++ +.
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~-----------fSPd~r~IASaSFDkSVkLW~g~tGk~-------------la 403 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVS-----------FSPDGRYIASASFDKSVKLWDGRTGKF-------------LA 403 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEE-----------ECCCccEEEEeecccceeeeeCCCcch-------------hh
Confidence 9999976443 3333222222211111 233488999999999999999988732 22
Q ss_pred eeccCCcc--cccceE-ECC-EEEEeeeCCeEEEEeccccccc
Q 003331 789 KLELQGDI--FSSPVM-IGG-RVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 789 ~~~~~~~~--~~s~~~-~~~-~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++ .|.+ +..... .+. .|..|+.|..|..|+..++++.
T Consensus 404 sf--RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 404 SF--RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred hh--hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 22 2211 111111 233 4555777889999999998864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-14 Score=131.29 Aligned_cols=270 Identities=15% Similarity=0.164 Sum_probs=198.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEc--------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKL--------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~--------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
+.++.++..||.||.|-.||-.+|+++-..+. .+....+..++.|...+..|+.||.|..|...||.++.+|
T Consensus 222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF 301 (508)
T ss_pred CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh
Confidence 34688999999999999999999987643221 1223446677888788999999999999999999999887
Q ss_pred e-cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 555 Q-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 555 ~-~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+ .+..-..+..++.++..|+.++.|..++.--.++|+++..+..+.+......+.+++..++.++.||.+.+|+.++
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt-- 379 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT-- 379 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc--
Confidence 6 3444445556666777899999999999999999999988888877777777888889999999999999999887
Q ss_pred ceEEEeeccCCcce--eeeeeee-cCCEEEEEeeCCeEEEEcCCCCEEEEeecCC---ceeecCcccccCCCeEEEEeeC
Q 003331 634 FHTLWLHELEVPAF--ASLCITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRN 707 (829)
Q Consensus 634 g~~~w~~~~~~~~~--~s~~~~~-~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~---~~~~~~~~~~~~~~~i~~~t~~ 707 (829)
++.+-+++...... .+..+.+ +...+.++...+++|+++-.|+++-.+..+. .-|...++ .-.+.-+|+...|
T Consensus 380 teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l-SpkGewiYcigED 458 (508)
T KOG0275|consen 380 TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL-SPKGEWIYCIGED 458 (508)
T ss_pred hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe-cCCCcEEEEEccC
Confidence 77776665443221 2333333 3456778888899999997788887766432 11222111 2246689999999
Q ss_pred CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 708 GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 708 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
+.+|||+..+|++...+..+.......... ++.+.++.-+.||.+..|
T Consensus 459 ~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH-----------PHqNllAsYsEDgllKLW 506 (508)
T KOG0275|consen 459 GVLYCFSVLSGKLERTLPVHEKDVIGLTHH-----------PHQNLLASYSEDGLLKLW 506 (508)
T ss_pred cEEEEEEeecCceeeeeecccccccccccC-----------cccchhhhhcccchhhhc
Confidence 999999999999988877655433222222 236667777778876655
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-12 Score=136.06 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=197.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++++..++.+..|..||..+|+.+-. +..+..-..+..+...++.++.|+.|.++..||..+|++...+..+......
T Consensus 217 ~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 217 HDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC 296 (537)
T ss_pred ecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE
Confidence 378899999999999999999998876 5555544444555444678999999999999999999999988766654443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
. ......+..|+.|..|++|+..+|+.+..+..+........++ ++.++.|+.+|.|.+|++.+ ++.+.....+
T Consensus 297 ~--~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~--~~cl~sl~gH 370 (537)
T KOG0274|consen 297 L--TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT--GKCLKSLSGH 370 (537)
T ss_pred E--EccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh--ceeeeeecCC
Confidence 3 3234666778899999999999999998887544444444444 59999999999999999997 8888877665
Q ss_pred CcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 644 VPAFASLCITSAN-RHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 644 ~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.....+. ..+. ..++.|+.|+.|.+|| .++ +.+..+.......... ...+..+..++.|+.|..||..+++.
T Consensus 371 ~~~V~sl--~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 371 TGRVYSL--IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred cceEEEE--EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeecccCce
Confidence 4433333 3345 8999999999999999 777 5665555444333221 22345677778899999999999999
Q ss_pred EEEEecC--CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccc
Q 003331 721 LWEYSVG--DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKE 776 (829)
Q Consensus 721 ~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~ 776 (829)
+-.+... ..+.. .. .....+++++.+|.+.+||..++...+.
T Consensus 446 ~~~~~~~~~~~v~~---l~-----------~~~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSA---LA-----------LGKEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eeeeccCCcccEEE---ee-----------cCcceEEEEecCCeeEEEecccCchhhh
Confidence 8877764 11111 10 0146788899999999999998865443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=135.41 Aligned_cols=270 Identities=10% Similarity=0.064 Sum_probs=185.4
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
....+..++.|+.|+.||..+ ++++.+|..+...+..+.++.++..+..+++|+.|..||.+||+++-++..+..+.+.
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 356788888999999999876 8888888888777778889999999999999999999999999999999876554443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee-cc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH-EL 642 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~-~~ 642 (829)
..-.++.+.+++|..|+.|..||..+|+++..+..+-..+..+.+-+++.+.+..+.++.+.+|+... .-.+-.. ..
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~--~v~ik~i~~~ 383 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRI--PVPIKNIADP 383 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCC--Cccchhhcch
Confidence 22223347889999999999999999998887766655556666666567777778889899998665 3222211 11
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCce---eecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPI---FAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~---~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
......+....+.++.+..-+.++.++++. ..--.+-... ..+.. ++..+-..-.++.|..|..+|.++.||.+|
T Consensus 384 ~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 384 EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 111122334455677777777888888876 2111110000 01111 111111112355788899999999999999
Q ss_pred CcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 718 GNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 718 G~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
-+++-+.+.++.. ....+... ....++.++.+|.|.+||
T Consensus 464 ~kl~~~lkah~~~ci~v~wHP~-----------e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 464 TKLVSKLKAHDQPCIGVDWHPV-----------EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhhhccccCCcceEEEEecCC-----------CcceeEecccCceeEecC
Confidence 9887777666432 22222222 156788888999999885
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-11 Score=120.37 Aligned_cols=307 Identities=15% Similarity=0.142 Sum_probs=204.0
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CCeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGEVKCQ 563 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~~~~~~ 563 (829)
-++..|+.|+.+..|+---=|+..++..+.+...+.-+++||..+...+.||.+++||-+||+.+-.+.. +..-...
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEE
Confidence 3688889999888887443455555566677777888999999998888999999999999999988763 2233444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc---cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI---FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~---~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
..+.++...+.+.+.|..+..||..+++++.++..+..+ .-.++.. ++.|+..+.+|.+..+++.+ ++.+..+
T Consensus 241 lsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d--~~~~~~i 316 (603)
T KOG0318|consen 241 LSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSD--PSVLKVI 316 (603)
T ss_pred EEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccC--CChhhee
Confidence 567778889999999999999999999998887766542 1122222 47788888899999999988 7777777
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEe-ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~-~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+.....+..+.+++..+|.|+++|.|..|+ .+|..--.. +...+.... +.....+.++..+.|..|..++...+
T Consensus 317 ~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~--~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 317 SGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKG--MAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEE--EeecCCCcEEEEecCCeEEEEecccC
Confidence 76667677788888899999999999999999 666432111 111111111 11223467888888999999987544
Q ss_pred cEEEE--EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcc
Q 003331 719 NLLWE--YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDI 796 (829)
Q Consensus 719 ~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (829)
..--. .+++..... ..+ ...++.+.+.+.+ .|.++.-.++. ....+.- .
T Consensus 395 ~~t~~~~~~lg~QP~~-lav-----------~~d~~~avv~~~~-~iv~l~~~~~~---------------~~~~~~y-~ 445 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKG-LAV-----------LSDGGTAVVACIS-DIVLLQDQTKV---------------SSIPIGY-E 445 (603)
T ss_pred cccccceeecCCCcee-EEE-----------cCCCCEEEEEecC-cEEEEecCCcc---------------eeecccc-c
Confidence 32111 122222111 111 1124466666554 46666533221 1111110 1
Q ss_pred cccceE--ECCEEEEeeeCCeEEEEecccccccc
Q 003331 797 FSSPVM--IGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 797 ~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+..++ .+..+.+|..||.|+.|.+..+++.+
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE 479 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccc
Confidence 111111 46789999999999999998776544
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-11 Score=135.74 Aligned_cols=274 Identities=17% Similarity=0.155 Sum_probs=200.5
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEec
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQT 556 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~ 556 (829)
+.+..++..+..++.++.+..|+..+++ .+-....+........++.++..+..++.|+.|..||. ..++.+.++..
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 3344466778888899999999987776 44444445556677889999999999999999999999 56688888887
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
+.....+..+.+.+..+..|+.|+.++.||.++|+++-.+..+....+...+..++..++.++.++.+..||..+ |..
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--~~~ 322 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET--GSK 322 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC--Cce
Confidence 777677777887778999999999999999999999999988887777788888888999999999999999998 663
Q ss_pred E--EeeccCC-c-ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc---eeecCcccccCCCeEEEEeeCC
Q 003331 637 L--WLHELEV-P-AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP---IFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 637 ~--w~~~~~~-~-~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~---~~~~~~~~~~~~~~i~~~t~~g 708 (829)
. -...... + ......+.+++.++++++.++.+..|| ..+...-.+..... -...++ ....+..++.|+.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LSTGGKLIYSGSEDG 401 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc-ccCCCCeEEEEeCCc
Confidence 2 2222221 2 345667778899999999999999999 77766544432211 111111 122345688999999
Q ss_pred eEEEEeCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEc--cCCcEEEEE
Q 003331 709 SIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICT--SSGSIHILR 767 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~G~l~~~d 767 (829)
.|++||..++..+-.+... ....... +.....+.+...+ .|+.+.+|.
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~-----------~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDL-----------SSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceecc-----------ccCCCcCeeeecCcCCCceEEEec
Confidence 9999999998776655544 2211111 1123366777776 567777774
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-10 Score=121.71 Aligned_cols=276 Identities=14% Similarity=0.160 Sum_probs=198.1
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcCCCeEEEeeccCC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+.+...-..+++|-..|..+.+...+-.++..............+...++.|.+|+.. |.|..|+-.+-..+-+.+.+.
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~ 350 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS 350 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc
Confidence 3444444567777777777788888888888777776555566666567778887654 678888877766666776666
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
....+..+++++..+..|..||.|.+||... |-..-++.-+........+...++.++..+-||+|.+|| ...+---
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee
Confidence 6777888888888999999999999999887 888888877776667777888888999999999999999 7776655
Q ss_pred EeecCCceeecCcccccCCC-eEEEEeeCC-eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE
Q 003331 680 RCRTGGPIFAGPCTSFALPS-QVLICSRNG-SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g-~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
++..+.++..+ |+..+..| .+.+|+.|. .|+.|+.+||+++-.+..+....+...+. ..+..++.+
T Consensus 429 Tft~P~p~Qfs-cvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~-----------~~~~~LaS~ 496 (893)
T KOG0291|consen 429 TFTSPEPIQFS-CVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFS-----------PDGSLLASG 496 (893)
T ss_pred eecCCCceeee-EEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEc-----------cccCeEEec
Confidence 66666655332 44444444 455666554 59999999999987666554433322222 237899999
Q ss_pred ccCCcEEEEEeecCccccccccccccceeeeeeccCCccc---ccceEECCEEEEeeeCCeEEEEeccccc
Q 003331 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF---SSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 758 ~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+.|.+|.+||.-... ..........++. .+| ++..|-+.|-||.|.+||.+.+.
T Consensus 497 SWDkTVRiW~if~s~------------~~vEtl~i~sdvl~vsfrP--dG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSS------------GTVETLEIRSDVLAVSFRP--DGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred cccceEEEEEeeccC------------ceeeeEeeccceeEEEEcC--CCCeEEEEEecceEEEEEhhhce
Confidence 999999999986431 1122223333322 233 68899999999999999987653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=128.68 Aligned_cols=270 Identities=9% Similarity=-0.015 Sum_probs=206.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
++..|..|+.+|.+..|+..++..+-.+..+..-...+.+.+. +..+..++.||.+..|+..+-.++-.+..+..-.+
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 5778899999999999999999888888777655556666654 45789999999999999888778777776666667
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++.++.++++|..-..||..+++.+.....+.....++++..++..+..|+.|..=.+||+.+ |..+-.+..
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt--gr~im~L~g 343 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT--GRCIMFLAG 343 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc--CcEEEEecc
Confidence 778888999999999999999999999988877766666667777777677777888888778999998 888877777
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+...+.++.+++++-.+..|+.|+++.+|| ..-+.+...+...++.+........+..+..+++|+.+..|...+..++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc
Confidence 766667888888888899999999999999 6666666666555544433222233456778899999999999988877
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
-.+..+..-..+.-+ ..++..+..++.|.++..|.
T Consensus 424 ksLaGHe~kV~s~Di-----------s~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 424 KSLAGHEGKVISLDI-----------SPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hhhcCCccceEEEEe-----------ccCCceEEEeccCceeeecc
Confidence 655443332222111 12367888888888887773
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-12 Score=121.77 Aligned_cols=276 Identities=16% Similarity=0.134 Sum_probs=186.7
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+..+.+.+..+..|+.|+.+..||+.||+++-+...+-+..-...++...-+++.++.|+.+.|||++..+.+..+..+-
T Consensus 156 ~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHl 235 (460)
T KOG0285|consen 156 SVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHL 235 (460)
T ss_pred EEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhcccc
Confidence 44555555567788889999999999999988776554444445666667789999999999999999988887765443
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
...-...+.+..+.|+.++.|..+.+||..+ -..+..+..+.....+..+.+.+..++.|+.|++|..|| ..|+..-
T Consensus 236 S~V~~L~lhPTldvl~t~grDst~RvWDiRt--r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 236 SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred ceeEEEeccccceeEEecCCcceEEEeeecc--cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 3222333343357899999999999999998 555555555555555666666788999999999999999 8888765
Q ss_pred EeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc
Q 003331 680 RCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 759 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 759 (829)
........... +..-.....+..+....+.+|+.-.|.+.-.+.....+..+..... ++.+++|++
T Consensus 314 tlt~hkksvra--l~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~ns------------D~v~~~G~d 379 (460)
T KOG0285|consen 314 TLTHHKKSVRA--LCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNS------------DGVLVSGGD 379 (460)
T ss_pred eeecccceeeE--EecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeecc------------CceEEEcCC
Confidence 54433221111 1111233455544445699999999988766555554444333332 889999999
Q ss_pred CCcEEEEEeecCccccccccccccceeeeeeccCCcccc------cce-EECCEEEEeeeCCeEEEEecc
Q 003331 760 SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS------SPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 760 ~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------s~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+|.++.||-++|... +.......+|.+.+ +.. ..+.+|+.|..|..|..|...
T Consensus 380 ng~~~fwdwksg~ny----------Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNY----------QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ceEEEEEecCcCccc----------ccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999998877332 22222233333222 211 134578888778888888543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-11 Score=110.41 Aligned_cols=272 Identities=12% Similarity=0.060 Sum_probs=186.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC----e--EEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----R--CVY 594 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg----~--~~w 594 (829)
+.-++.|..+++.++.||.|..||..|.....-+..+....-..++.+.+..|.+|+.|+.-..|+.++. . ...
T Consensus 60 ~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 60 AMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred eeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeee
Confidence 4456667788999999999999999998887777777777777788888999999999987777776643 2 222
Q ss_pred eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-
Q 003331 595 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d- 672 (829)
.+..+....+...+.+ ++.|+.++.|.+...||+++ |+..-.+..+.....+..+.+ +.+....|+.|.....||
T Consensus 140 ~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~--g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~ 216 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIET--GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV 216 (343)
T ss_pred eecCccceeEEEEEcC-CCceEecCCCceEEEEEccc--ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec
Confidence 2333334444444443 68899999999999999998 988887776665556666666 566777788899999999
Q ss_pred CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCC
Q 003331 673 SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 673 ~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
+.|...-.+..... +-+..+ .-.+..+..|+.|+....||.+..+.+-.|.....+.....++ ...++
T Consensus 217 R~~~c~qtF~ghesDINsv~f--fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~---------FS~SG 285 (343)
T KOG0286|consen 217 RSGQCVQTFEGHESDINSVRF--FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA---------FSKSG 285 (343)
T ss_pred cCcceeEeecccccccceEEE--ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE---------Ecccc
Confidence 88877666554332 222111 1123457788999999999999988877666443322111111 23348
Q ss_pred cEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEE
Q 003331 752 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~ 819 (829)
.++++|..|.++++||.-.+ +......-+.+.++..-+ ++-.+-.|+.|-.|..|
T Consensus 286 RlLfagy~d~~c~vWDtlk~-------------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG-------------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred cEEEeeecCCceeEeecccc-------------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeec
Confidence 99999999999999997644 222222223334444333 23356667777777665
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-10 Score=110.82 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=169.4
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEEecCCe
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+++.+..+.+.+.|..+..||..+|++.-+.....--.-.+++......+..++. |..|..+++.+.+.+..|..+..
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCc
Confidence 4567778888888889999999999988776554322234566665566666665 77899999999999999988887
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEE-EecCCeEEEEEccCCCceEEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV-ASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v-~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+..+.+.++.++.++.|+.++.||.+..++.-.....+. ..+++++ .|.+++ +.....|..||++.-...+.-
T Consensus 102 ~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF~ 178 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDP-EGLIFALANGSELIKLYDLRSFDKGPFT 178 (311)
T ss_pred eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECC-CCcEEEEecCCCeEEEEEecccCCCCce
Confidence 777777777778899999999999999987666554443332 2334565 344444 444447888887652223333
Q ss_pred eeccC---CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC--cccccCCCeEEEEeeCCeEEE
Q 003331 639 LHELE---VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP--CTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 639 ~~~~~---~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~--~~~~~~~~~i~~~t~~g~l~~ 712 (829)
.+... ........++++++.+.+++..+.++.+| -+|.++..++........+ +...-....|+.|+.||.|++
T Consensus 179 tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 179 TFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHV 258 (311)
T ss_pred eEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEE
Confidence 33332 23335667888999999999999999999 8999887766432221111 111112346777888899999
Q ss_pred EeCCCCcEEEEEecC
Q 003331 713 FEQESGNLLWEYSVG 727 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~ 727 (829)
|+.++|+.+-....+
T Consensus 259 w~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 259 WNLETGKKVAVLRGP 273 (311)
T ss_pred EEcCCCcEeeEecCC
Confidence 999999987666543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5e-11 Score=109.49 Aligned_cols=261 Identities=11% Similarity=0.118 Sum_probs=178.4
Q ss_pred ccccccccccccccce-------EEeeCCCeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEeeCCcEEEEE
Q 003331 464 ELWKVHMESCVDASPL-------VVLKDSDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVG 534 (829)
Q Consensus 464 ~~W~~~~~~~~~~sp~-------v~~~d~~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~~~~v~vg 534 (829)
+.|+..+|.|+..-+- +-...+++.|.++...+ |..||..+++. +-++..+...+.++.+..+|.-+|.|
T Consensus 23 RfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 23 RFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred eeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec
Confidence 4588888888632110 11123455666666665 99999988864 56777776666778898999999999
Q ss_pred EeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCcccccceeecCCC
Q 003331 535 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHD 613 (829)
Q Consensus 535 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~ 613 (829)
+.||.+..||...-.....|+....+. ..+..+..+-+++|+.+|+|++||..+..+...... ......+..+..++.
T Consensus 102 seDgt~kIWdlR~~~~qR~~~~~spVn-~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs 180 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLSCQRNYQHNSPVN-TVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS 180 (311)
T ss_pred CCCceEEEEeccCcccchhccCCCCcc-eEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc
Confidence 999999999998866655666664443 345556677899999999999999987655443322 233455667777778
Q ss_pred EEEEEecCCeEEEEEccCCCc----eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeec-CCcee
Q 003331 614 VLYVASTSGRLTAISVKALPF----HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRT-GGPIF 688 (829)
Q Consensus 614 ~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~-~~~~~ 688 (829)
.+..++..|.+|+|+.-+... .++-+++..........++++.+++..++.+.++++|+.++-+.-+... ++.-.
T Consensus 181 ml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 181 MLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred EEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce
Confidence 888888899999999765211 2333444444444566778889999999999999999943333222222 22111
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.-.|.....+..|+.++.|+.+..|+...|+.+..+..
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 11222223355788889999999999999998766543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=129.90 Aligned_cols=270 Identities=11% Similarity=0.072 Sum_probs=180.0
Q ss_pred CCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
.+.++..++.|+.|+.|+.-+ ++++.+|..+........+...+..++.++.|+.+..||.+||+++-++..+......
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cv 305 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCV 305 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceee
Confidence 445677888999999999866 8999999888766666667777788999999999999999999999998876544433
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
-.-.++.+.+++|+.++.|..||..+ |+.+..+........++.+.+.+.+.+..+.++.+.+|+ ..+-.+ ++...
T Consensus 306 kf~pd~~n~fl~G~sd~ki~~wDiRs--~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i-k~i~~ 382 (503)
T KOG0282|consen 306 KFHPDNQNIFLVGGSDKKIRQWDIRS--GKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI-KNIAD 382 (503)
T ss_pred ecCCCCCcEEEEecCCCcEEEEeccc--hHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc-hhhcc
Confidence 22233347888999999999999998 888777766655556777777788888888888888888 554433 22233
Q ss_pred CceeecCcccccCCCeEE-EEeeCCeEEEEeCCCCcEEEEEec--CCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 685 GPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQESGNLLWEYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~-~~t~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
....+.|++..-.++..+ .-+.++.++++....--.....+. +..+...++. -...+++++++.|+.+|
T Consensus 383 ~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~--------v~fSpDG~~l~SGdsdG 454 (503)
T KOG0282|consen 383 PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ--------VDFSPDGRTLCSGDSDG 454 (503)
T ss_pred hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee--------EEEcCCCCeEEeecCCc
Confidence 345666766544444444 447788888887432111111110 1111100000 11245699999999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE---ECCEEEEeeeCCeEEEEe
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~l~vg~~~g~l~~~d 820 (829)
.++.||-++- +++...+.+......... ....+..++.+|.|..||
T Consensus 455 ~v~~wdwkt~-------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTT-------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhh-------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999997753 223222322211111111 236778888899998875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-10 Score=107.25 Aligned_cols=273 Identities=11% Similarity=0.058 Sum_probs=182.3
Q ss_pred CCcEEEEEEeCCEEEEEEcC-----CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 527 DFSQVVVGCYKGKIYFLDYL-----TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
+.+.++.++.|..+..|++. .|.++..+..+.-.....++..++.+.+.+++|+.++.||..+|+...++..+..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 34567778888888888753 4667777777666666666777888999999999999999999999888887777
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC--Ccceeeeeeeec--CCEEEEEeeCCeEEEEc-CCCC
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSA--NRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
..-+..++.++..|..|+.|.++..||.. |....+.... ..-.....+.+. +-.+..++.|+.+.+|| .+-+
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~---g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~ 183 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTL---GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ 183 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeec---ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence 66777788878899999999999999977 4555554433 334455666666 55777788999999999 6666
Q ss_pred EEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
+...+.......+.. ....||. +..|..+|.++.||...++-+.++.....+.+..+.. +.+..
T Consensus 184 l~~~~~gh~~~v~t~--~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp-------------nrywL 248 (315)
T KOG0279|consen 184 LRTTFIGHSGYVNTV--TVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP-------------NRYWL 248 (315)
T ss_pred hhhccccccccEEEE--EECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC-------------CceeE
Confidence 554443332222221 1223554 4567789999999999999988877766665544433 33333
Q ss_pred EEccCCcEEEEEeecCccccccccccccceeeee-eccCCcccccceE--ECCEEEEeeeCCeEEEEecc
Q 003331 756 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK-LELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
+....-.|.+||..++..-..+... .... .+.....--+... ++..||.|-.+|.|..|...
T Consensus 249 ~~at~~sIkIwdl~~~~~v~~l~~d-----~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATATSIKIWDLESKAVVEELKLD-----GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccCCceEEEeccchhhhhhcccc-----ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3444556999999876321111100 0000 0000111112222 36689999999999888653
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-10 Score=116.22 Aligned_cols=265 Identities=12% Similarity=0.129 Sum_probs=168.2
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 567 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 567 (829)
++.++.++.++.||..+++....+..+... ....++++++.+|+ +..++.|+.||..+|+.+..+..+... ....+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~ 81 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFALH 81 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCC-CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEEC
Confidence 345567899999999999988777755443 35677778777765 456789999999999987766544333 234456
Q ss_pred cCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC-eEEEEEccCCCceEEEeeccCCc
Q 003331 568 APRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 568 ~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
++++.+|+++ .++.++.||..+++.+..+..+.. ...+.+.+++..++++..++ .++.+|.++ ++..........
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE-PEGMAVSPDGKIVVNTSETTNMAHFIDTKT--YEIVDNVLVDQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC-cceEEECCCCCEEEEEecCCCeEEEEeCCC--CeEEEEEEcCCC
Confidence 6667777764 578999999999888776654332 23455666667777777654 456678776 655443322221
Q ss_pred ceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCce----eecC-cccccCC-CeEEEE-eeCCeEEEEeCC
Q 003331 646 AFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPI----FAGP-CTSFALP-SQVLIC-SRNGSIYSFEQE 716 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~----~~~~-~~~~~~~-~~i~~~-t~~g~l~~~d~~ 716 (829)
.....+.+++..+++++ .++.+..|| .+++.+-++....+. ...+ .+....+ ..+|++ ..++.+..||.+
T Consensus 159 -~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 159 -PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 13345666777787665 478999999 888765443321100 0001 1112223 345665 345679999999
Q ss_pred CCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 717 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 717 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
+++++-....+..+....+ .+++..++++. .+|.|.+||..++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~------------~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAF------------TPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CCcEEEEEEeCCCcceEEE------------CCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9888654433332222111 22367788764 5899999999865
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-13 Score=160.11 Aligned_cols=206 Identities=14% Similarity=0.076 Sum_probs=143.3
Q ss_pred CCccEEEEecC--CCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 18 SSLKLLVLSGE--VLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 18 ~~lr~i~~gGe--~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
..+|.+++||. +++..+. . ++++...||+||+. +..... .....|.|+|+++++|.+
T Consensus 757 Grlr~~isGga~~~l~~~l~-----~--~i~i~~g~glTE~~---~~~~~~-----------~~~~~G~PlpgvEvKI~~ 815 (1452)
T PTZ00297 757 GCVEKIVLCVSEESTSFSLL-----E--HISVCYVPCLREVF---FLPSEG-----------VFCVDGTPAPSLQVDLEP 815 (1452)
T ss_pred CCeEEEEECCCccccChHHh-----C--CceEEEecceEEee---eecCCC-----------CcccCCeecCceEEEEcc
Confidence 57999999983 5553332 2 57788899999953 211111 111249999999999986
Q ss_pred CCC--CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 96 SDT--VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 96 ~~~--~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+. ..+..|||+++ |+++|+.|.+.+ ++| ++||.|.|+||++|+|
T Consensus 816 ~~E~~~~~~~GEIlvr-------~~kdpe~T~e~~-----------------~gW---------~~dG~L~IidRkKdli 862 (1452)
T PTZ00297 816 FDEPSDGAGIGQLVLA-------KKGEPRRTLPIA-----------------AQW---------KRDRTLRLLGPPLGIL 862 (1452)
T ss_pred cccccCCCCCCeEEEE-------ECCChHHHHHhh-----------------CcC---------ccCCeEEEEeccccce
Confidence 422 23346999995 457787776521 233 4799999999999999
Q ss_pred EE-CCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC--------------------chHHHHH--
Q 003331 174 KI-NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT--------------------SSEIFLS-- 230 (829)
Q Consensus 174 k~-~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~--------------------~~~~~~~-- 230 (829)
|. +|++|.|+.||..+..+|.|.+++|++.... .++|+|++..... ..+++.+
T Consensus 863 kls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~lvALVvpd~e~l~~~wa~~~gi~~~~~~~~~~~~~el~~~~ 938 (1452)
T PTZ00297 863 LPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----PIIAIVSPNRDTVEFEWRQSHCMGEGGGPARQLGWTELVAYA 938 (1452)
T ss_pred ECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----ceEEEEEeCHHHHHHHHHHHcCCCccccccccCCHHHHHHhH
Confidence 99 9999999999999999999999999987654 3788887763211 1111111
Q ss_pred --HHHHHH---H--hcCCCCCcCCeEEEeC-cc-----cCCCCCCcchhhhccccccccccccc
Q 003331 231 --SIKSWV---S--SKLPLAMIPNRFVFMD-SL-----PMTSSGKVDYASLSASTSFTISAQHD 281 (829)
Q Consensus 231 --~l~~~l---~--~~l~~~~~p~~~~~~~-~l-----P~t~~GKi~r~~l~~~~~~~~~~~~~ 281 (829)
.+++.+ . ..+..+.+++.+++++ +| -+|++.|+.|+.+.+.|...++..+.
T Consensus 939 ~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297 939 SSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDAVHSYFSSVIERFYS 1002 (1452)
T ss_pred HHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHHHHHHHHHHHHHHhc
Confidence 222222 1 1256678888777754 45 47999999999999888776665554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-10 Score=111.86 Aligned_cols=306 Identities=12% Similarity=0.077 Sum_probs=196.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.+....+.||++++||-+||+..-.+. .+.........++|..++...+.|.++..||..+.++..++..+..+.
T Consensus 201 DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~ 280 (603)
T KOG0318|consen 201 DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVE 280 (603)
T ss_pred CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchh
Confidence 45666667788999999999999988776 333444577888899999999999999999999999987776654422
Q ss_pred ---eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 562 ---CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 562 ---~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+.. ++.|++-+.+|.+..+++.++.++..+..+...+....+.+++..+|.++.+|.|..|+..+ |..--
T Consensus 281 dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~--g~~~~ 356 (603)
T KOG0318|consen 281 DQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGS--GTSDR 356 (603)
T ss_pred ceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCC--ccccc
Confidence 122233 56778888899999999999998877777776777778888889999999999999999876 53211
Q ss_pred ee-ccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-C-CCCEEE-EeecCCceeecCcccccCCC-eEEEEeeCCeEEE
Q 003331 639 LH-ELEVPAFASLCITS-ANRHVICCLVDGHVVALD-S-SGSIIW-RCRTGGPIFAGPCTSFALPS-QVLICSRNGSIYS 712 (829)
Q Consensus 639 ~~-~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~-~g~~~w-~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~ 712 (829)
.. +.+.... ..+.. ..+.++..++|..+..++ . +|--.. ..+.+..... +....++ .+.+.+.+ .|..
T Consensus 357 ~~g~~h~nqI--~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~---lav~~d~~~avv~~~~-~iv~ 430 (603)
T KOG0318|consen 357 LAGKGHTNQI--KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG---LAVLSDGGTAVVACIS-DIVL 430 (603)
T ss_pred cccccccceE--EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee---EEEcCCCCEEEEEecC-cEEE
Confidence 11 1111111 12222 337888888899998887 3 221111 1222221111 1223343 55555554 4777
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003331 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
+.-.++-.. .+..-.....+ ..+++..+++|..||.|++|.+..+... ......+.
T Consensus 431 l~~~~~~~~--~~~~y~~s~vA------------v~~~~~~vaVGG~Dgkvhvysl~g~~l~----------ee~~~~~h 486 (603)
T KOG0318|consen 431 LQDQTKVSS--IPIGYESSAVA------------VSPDGSEVAVGGQDGKVHVYSLSGDELK----------EEAKLLEH 486 (603)
T ss_pred EecCCccee--eccccccceEE------------EcCCCCEEEEecccceEEEEEecCCccc----------ceeeeecc
Confidence 764443332 22111111111 1234889999999999999988754211 11112233
Q ss_pred CCcc---cccceEECCEEEEeeeCCeEEEEecccccc
Q 003331 793 QGDI---FSSPVMIGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 793 ~~~~---~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
.+.+ ..+| ++.+|..+.-.+.+..||.++++.
T Consensus 487 ~a~iT~vaySp--d~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 487 RAAITDVAYSP--DGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred cCCceEEEECC--CCcEEEEeccCCcEEEEEcccCce
Confidence 3332 1222 345666677788999999988765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-10 Score=134.40 Aligned_cols=281 Identities=10% Similarity=0.061 Sum_probs=173.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCC----c----EEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRS----S----VLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg----~----~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
++.++..+..|+.|+.|..||..+. . .......... ....++.. .+..+++++.|+.|..||..+++.+.
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~ 569 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK-LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT 569 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCc-eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 3345677889999999999997532 1 1111111122 12334433 35688999999999999999999888
Q ss_pred EEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 553 TFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+..+........+.+ ++..+++|+.|+.++.||..+++.+..+.....+.+.....+++..+++++.+|.|+.||..+
T Consensus 570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 8766554444445553 456788999999999999999987766654433322222233467888999999999999876
Q ss_pred CCce-EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC------CEEEEeecCCceeecCcccc-cCCCeEE
Q 003331 632 LPFH-TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG------SIIWRCRTGGPIFAGPCTSF-ALPSQVL 702 (829)
Q Consensus 632 ~~g~-~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g------~~~w~~~~~~~~~~~~~~~~-~~~~~i~ 702 (829)
++ .+.....+........+. ++..++.++.|+.|..|| ..+ +.+..+........ ++.. ..++.+.
T Consensus 650 --~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~--~v~~s~~~~~la 724 (793)
T PLN00181 650 --PKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN--FVGLSVSDGYIA 724 (793)
T ss_pred --CCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee--EEEEcCCCCEEE
Confidence 43 222232233233334443 577888999999999999 532 33333332211111 1111 1245788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+|+.||.|+.|+...+...|.+..... ............+........+..+++++.+|.|.+|+.
T Consensus 725 sgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 725 TGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 899999999999888877766543221 100000000000011112234778999999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-11 Score=128.89 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=186.2
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEE-EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWT-FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
++.+..++.+..|..||..+|..+-. +..+........+...++.++.|+.|..+..||..+|++...+..+.......
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 46889999999999999999998876 55443333333344357889999999999999999999999887655544333
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
.+. ...+..|+.|.+|.+|+..+ |..+-....... ...++..+++.++.|+.++.|.+|| .+++.+...+...
T Consensus 298 ~~~--~~~~~sgs~D~tVkVW~v~n--~~~l~l~~~h~~--~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 298 TID--PFLLVSGSRDNTVKVWDVTN--GACLNLLRGHTG--PVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT 371 (537)
T ss_pred Ecc--CceEeeccCCceEEEEeccC--cceEEEeccccc--cEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc
Confidence 333 35666678999999999998 877766653222 2233444688999999999999999 8999887766432
Q ss_pred c-eeecCcccccCCCeEEEEeeCCeEEEEeCCCC-cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 686 P-IFAGPCTSFALPSQVLICSRNGSIYSFEQESG-NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 686 ~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
. +.+. ..+....++.|+.|+.|..||..++ +.+-.+..+..+.... ...+..+..++.||.|
T Consensus 372 ~~V~sl---~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l-------------~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 372 GRVYSL---IVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL-------------LLRDNFLVSSSADGTI 435 (537)
T ss_pred ceEEEE---EecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc-------------ccccceeEeccccccE
Confidence 2 2222 1222268999999999999999998 6665555544443211 2237788889999999
Q ss_pred EEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003331 764 HILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 764 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.+||..++.. ....+-+ -..++.....+..++.++.+|.+..||+.+++..
T Consensus 436 k~WD~~~~~~-------------~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 436 KLWDAEEGEC-------------LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred EEeecccCce-------------eeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchh
Confidence 9999987632 2222221 0111111112578889999999999999998864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=116.60 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=185.7
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.....+|..+.+|.+||.+..|+ .+|.++-++..+.....+.-....+.+|..++-|+.+..||..+|+....+...
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec
Confidence 4556777889999999999999999 788888777666555555556667788999999999999999999988877665
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
....-..... +++.+...+.+|.++++.+.. -.+.-++..+..........+.+..+..++.|+++..|+ .++...
T Consensus 318 s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~--~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 318 SAPALDVDWQ-SNDEFATSSTDGCIHVCKVGE--DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred cCCccceEEe-cCceEeecCCCceEEEEEecC--CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch
Confidence 4331111111 235566666788787776654 334444444444445566666678888899999999998 444332
Q ss_pred EEeecCC-ce---eecCc---ccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccC
Q 003331 679 WRCRTGG-PI---FAGPC---TSF-ALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 679 w~~~~~~-~~---~~~~~---~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
..+.... .+ ..+|. ... ..+-.+..++.|+.|..||...|..+..+ +...++++..+..+
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~----------- 463 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN----------- 463 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC-----------
Confidence 2222111 11 22221 111 12234666678999999999999999887 66777776655544
Q ss_pred CCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccc-cceEECCEEEEeeeCCeEEEEecc
Q 003331 750 IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS-SPVMIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+.+++.|+.||.|.+|+.+++ +++..+.-.+.+|. .-...+++|-+.-.+|.+.++|+.
T Consensus 464 -g~ylAsGs~dg~V~iws~~~~-------------~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 -GRYLASGSLDGCVHIWSTKTG-------------KLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred -CcEEEecCCCCeeEeccccch-------------heeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 899999999999999999876 55555555554432 111245677777778888888863
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=116.62 Aligned_cols=267 Identities=14% Similarity=0.106 Sum_probs=186.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..|..|+.+|.+..||. +|..+-.+..+...+.+.-....|.+|..++-|+++..||..+|.....+..+.....-.
T Consensus 246 ~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDV 324 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDV 324 (524)
T ss_pred CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccce
Confidence 4667888999999999995 577777766666555666777788899999999999999999999988887665431111
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
-+. +...+.+.+.|+.|+.+-.....++-++..+...++.+-+.+.+..|..++.|+++..|+... +.....+..+.
T Consensus 325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~--~~~~~~l~~Hs 401 (524)
T KOG0273|consen 325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ--SNSVHDLQAHS 401 (524)
T ss_pred EEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC--Ccchhhhhhhc
Confidence 122 234566777888888777666667766665555555566666567778888899999998554 22222222222
Q ss_pred cceeeeeee---------ecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 645 PAFASLCIT---------SANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 645 ~~~~s~~~~---------~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
..+.+...+ ..+..+..++.++.|.+|| ..|..+..+. ...++++..+.+. +..+..|+.||.|..|
T Consensus 402 kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~--g~ylAsGs~dg~V~iw 479 (524)
T KOG0273|consen 402 KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN--GRYLASGSLDGCVHIW 479 (524)
T ss_pred cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC--CcEEEecCCCCeeEec
Confidence 111111111 1244667777899999999 9999998874 4456666654332 3468888999999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+.++|++.-.+.....+...-+..+ ++++.++..+|.+.++|..
T Consensus 480 s~~~~~l~~s~~~~~~Ifel~Wn~~------------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 480 STKTGKLVKSYQGTGGIFELCWNAA------------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cccchheeEeecCCCeEEEEEEcCC------------CCEEEEEecCCCceEEEec
Confidence 9999999887776666544333322 7889999999999998864
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-10 Score=117.01 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--eee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~~ 562 (829)
++++||....+|.|.-||+.+++++...+..+....++++.+.+..+.+||.||.++.++...+++......... -.-
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 688999999999999999999999988888888888999999888999999999999999888988766544322 222
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----C----cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----G----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+..+.+++..|..|+.||.|.+||.++|..+...... . -+++...+. ++.|..|...|.|..||...
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd~~~-- 234 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWDSIF-- 234 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEcccC--
Confidence 3344555556999999999999999999887733221 1 133444444 48899999999999999888
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|+.+...........+.+..++++++++++.++.++-|.
T Consensus 235 gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 235 GTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred cchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 877776666555556666777778888888888888777
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-12 Score=119.31 Aligned_cols=202 Identities=11% Similarity=0.118 Sum_probs=163.6
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
+.++-+...+..|+.||.|..|-..||.++.+|+ .+..-.++..++.|+..+..++.|..+...-.++|+.+..+..+.
T Consensus 269 i~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs 348 (508)
T KOG0275|consen 269 ISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS 348 (508)
T ss_pred EeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence 3345556778889999999999999999998876 444455677889999999999999999999999999999888887
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc---ccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS---IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
....-..+.+++..|+.++.||.+..|+.++++++-++...+. +.+...+..+...+++....+.+|+.+.. |.
T Consensus 349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q---GQ 425 (508)
T KOG0275|consen 349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ---GQ 425 (508)
T ss_pred ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc---ce
Confidence 7777778888889999999999999999999999988876542 33333445555678888888899999987 77
Q ss_pred EEEeeccC---CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 636 TLWLHELE---VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 636 ~~w~~~~~---~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+-.+..+ ...|.+.++++.+..+|+...|+.+|||+ .+|++-......
T Consensus 426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 77666543 34567778888999999999999999999 899887666543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.6e-10 Score=130.11 Aligned_cols=286 Identities=8% Similarity=0.040 Sum_probs=171.8
Q ss_pred CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----c----EEEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEE
Q 003331 516 GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----D----IYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 516 ~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~----~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d 586 (829)
.....+..++.++..+++|+.|+.|..||..+. . ..........+ ....+.. .+..|.+++.||.|..||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKL-SGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCce-eeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 334556778888889999999999999996532 1 11112112222 2223322 356788899999999999
Q ss_pred cCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeee-eecCCEEEEEee
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI-TSANRHVICCLV 664 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~-~~~~~~l~~~~~ 664 (829)
..+++.+..+..+...+.+..+.. ++..++.++.+|.+..||+.+ +..+..+..... ..+..+ ..++..+++|+.
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~--~~~~~~~~~~~~-v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ--GVSIGTIKTKAN-ICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC--CcEEEEEecCCC-eEEEEEeCCCCCEEEEEeC
Confidence 999998888766655455555553 456788899999999999987 665555443322 223333 234678899999
Q ss_pred CCeEEEEc-CCCCE-EEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC------cEEEEEecCCccccccc
Q 003331 665 DGHVVALD-SSGSI-IWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG------NLLWEYSVGDPITASAY 735 (829)
Q Consensus 665 ~g~i~~~d-~~g~~-~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~ 735 (829)
+|.|++|| .+++. +...... ..+.... ...+..++.++.|+.|..||..++ +.+..+...........
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~---f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVR---FVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEE---EeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 99999999 66542 2222221 2232221 223567888999999999998753 33333332222111111
Q ss_pred cccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee--ccCCcccccceE--ECCEEEEee
Q 003331 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL--ELQGDIFSSPVM--IGGRVFVGC 811 (829)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~--~~~~l~vg~ 811 (829)
....++++++|+.||.|++|+.......... .... ....... ......+++... .+..|+.|+
T Consensus 716 -----------~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~-~~~~-~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 716 -----------LSVSDGYIATGSETNEVFVYHKAFPMPVLSY-KFKT-IDPVSGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred -----------EcCCCCEEEEEeCCCEEEEEECCCCCceEEE-eccc-CCcccccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 1223789999999999999997643110000 0000 0000000 001122222222 345888899
Q ss_pred eCCeEEEEec
Q 003331 812 RDDYIYCIAL 821 (829)
Q Consensus 812 ~~g~l~~~d~ 821 (829)
.+|.|.+|+.
T Consensus 783 ~dG~I~i~~~ 792 (793)
T PLN00181 783 STGNIKILEM 792 (793)
T ss_pred CCCcEEEEec
Confidence 9999999975
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.5e-12 Score=119.90 Aligned_cols=275 Identities=13% Similarity=0.091 Sum_probs=175.6
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
+.-|++.++.|..|++|..||.++-.++.....+ +.+. ++.-+...|+.|+.|.++..||.+||+++-.+-.+-..
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVL---CLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVL---CLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEE---eeeccceEEEecCCCceEEEEeccCCchhhHHhhhcce
Confidence 3345567899999999999998776666544333 2332 33334578888999999999999999998766544333
Q ss_pred cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEe
Q 003331 603 FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC 681 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~ 681 (829)
.-...+.. ++++..+.|..+.+||....+-..+-+. +.+...+...+..++++++.++.|.+|..|+ .+++.+-..
T Consensus 280 VLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrV-LvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl 356 (499)
T KOG0281|consen 280 VLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRV-LVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTL 356 (499)
T ss_pred eEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHH-HhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhh
Confidence 33334443 8888888899899998775221111000 1111112223444677888899999999999 888877554
Q ss_pred ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
..... ...|. ...+..+..|+.|.+|..||...|+.+..++.+.......-++ +..|..|..||
T Consensus 357 ~gHkR--GIACl-QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-------------~krIVSGaYDG 420 (499)
T KOG0281|consen 357 NGHKR--GIACL-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-------------NKRIVSGAYDG 420 (499)
T ss_pred hcccc--cceeh-hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-------------Cceeeeccccc
Confidence 43322 22222 2335567788999999999999999877666555544333232 67899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEecccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg 824 (829)
+|.+||...+..-.... .. .-+.......|.+| ..-++.-.|...+.+..+..||..++
T Consensus 421 kikvWdl~aaldpra~~--~~-~Cl~~lv~hsgRVF-rLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 421 KIKVWDLQAALDPRAPA--ST-LCLRTLVEHSGRVF-RLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eEEEEecccccCCcccc--cc-hHHHhhhhccceeE-EEeecceEEEeccCCCeEEEEEcCCC
Confidence 99999998763211000 00 00001111222332 23345567888888999999998765
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=114.84 Aligned_cols=269 Identities=13% Similarity=0.070 Sum_probs=172.6
Q ss_pred CCeEEEEecCCCcEEEEECC-CCcEE--EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Cee
Q 003331 485 SDIYLFVGSHSHKFICADAK-RSSVL--WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~-tg~~~--w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~ 560 (829)
.+.++..+|.|.+...|+.. ++++. -+...+...+.-..+++|+.++++.+.+..+..||+.||..+..+..+ +..
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S 314 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS 314 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCC
Confidence 45666666666655555432 23322 222233334456678899888888888888999999999998877655 344
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE--EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
.++.+..+++..+++|+.|++++.||.. |+++ |+..-. .......+..++..++..+.+..+..|+.++. ...-
T Consensus 315 ~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~--~dr~ 390 (519)
T KOG0293|consen 315 VSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRD-PKVHDLAITYDGKYVLLVTVDKKIRLYNREAR--VDRG 390 (519)
T ss_pred cceeEEccCCceeEecCCCCcEEEecCC-cchhhccccccc-ceeEEEEEcCCCcEEEEEecccceeeechhhh--hhhc
Confidence 5566777788889999999999999954 5543 433211 22334455566788888888888999987752 1111
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--c-eeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--P-IFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
.... ...+.+..++.++..+.+.-.+..+..|| ...+++-++.... . +..+ |.....+..|..|++|+.||.|+
T Consensus 391 lise-~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 391 LISE-EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccc-cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe-ccCCCCcceEEecCCCceEEEEE
Confidence 1122 22346667777777777777778888888 6555544433211 1 1111 22222345688899999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+|+++-.+..+.......... ..+...++.+++||+|.+|-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVswN----------P~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWN----------PADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEecC----------CCCHHHhhccCCCCeEEEecCC
Confidence 99999998876554322111111 1124567788899999999654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.4e-09 Score=114.85 Aligned_cols=314 Identities=16% Similarity=0.177 Sum_probs=193.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~ 564 (829)
=+.|.+|+.+|.+..||.++++.+.+++.......+...++-=+.|.+|+.+|.|..+|.+.++++.+|+.. +.+....
T Consensus 172 LNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 172 LNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred eeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEE
Confidence 467999999999999999999999887754432223333333347899999999999999999999999886 5554443
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-C-Ccccc------ccee----ecCCCEEEE---------------
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-G-GSIFG------SPAI----DEVHDVLYV--------------- 617 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~-~~~~~------~~~~----~~~~~~l~v--------------- 617 (829)
.-.++.-.+.+|+..|.+..||.+..+..|.... + +.+.. .|++ .++.-.+|+
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~ 331 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG 331 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc
Confidence 3344444556677779999999998888876542 1 11100 0100 000011121
Q ss_pred ---------------------EecCCeEEEEE---------------cc-------------------------------
Q 003331 618 ---------------------ASTSGRLTAIS---------------VK------------------------------- 630 (829)
Q Consensus 618 ---------------------~t~~g~l~~~~---------------~~------------------------------- 630 (829)
+..|+.+..++ ..
T Consensus 332 GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W 411 (910)
T KOG1539|consen 332 GHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEW 411 (910)
T ss_pred CCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhh
Confidence 11111111111 00
Q ss_pred --------CCCceEEEeeccCC--------c-------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee----
Q 003331 631 --------ALPFHTLWLHELEV--------P-------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR---- 682 (829)
Q Consensus 631 --------~~~g~~~w~~~~~~--------~-------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~---- 682 (829)
...-...|.+.... . ...+.+++.-++..++|+..|.|-.|| ++|-....+.
T Consensus 412 ~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 412 DNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred cceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 00001223322110 0 113445566688899999999999999 8987766652
Q ss_pred cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 683 TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
..+++....+ ...+..+..++.+|.+..||.++..++-+.+.+..+....+... .+.+.++..+=.
T Consensus 492 h~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~------------s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 492 HKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRV------------SDLLAIALDDFS 557 (910)
T ss_pred ccCceeEEEe--cCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeeh------------hhhhhhhcCcee
Confidence 2223322211 12244577788899999999988888777776666544333322 566777778888
Q ss_pred EEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 763 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
|.++|..+...-+. +.-.++-+....+ ++..|..++.|+.|..||+-++.+
T Consensus 558 I~vvD~~t~kvvR~-------------f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 558 IRVVDVVTRKVVRE-------------FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred EEEEEchhhhhhHH-------------hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 99999886532222 2222222222222 466888899999999999999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-10 Score=114.19 Aligned_cols=273 Identities=11% Similarity=0.050 Sum_probs=199.0
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
..+.++.+++.++.|+++|.+..|+..++..+-++..+..-.....+.+. +..+.+++.||.+..|+..+-.++-.+.
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~ 258 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE 258 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh
Confidence 34566778889999999999999999999888888776655555555543 4578999999999999988777777776
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.+..-.+...+.+++..|..++.|..-..||+.+ +..+-..+.+.....+.++..++..+..|+.|..-.+|| .+|.
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR 336 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhccccc--chhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc
Confidence 6666667778888889999999999999999998 766666666666667788888888888888888888899 9998
Q ss_pred EEEEeec-CCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEE
Q 003331 677 IIWRCRT-GGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 677 ~~w~~~~-~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 754 (829)
.+-.+.. ..++++.. ...+|. +..|+.|+...+||...-+.++.+..+.+..+-..+.. ..+.++
T Consensus 337 ~im~L~gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p----------~~g~fL 403 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVA---FSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP----------QEGYFL 403 (459)
T ss_pred EEEEecccccceeeEe---ECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc----------cCCeEE
Confidence 8765543 23455544 333554 67788999999999998888877776666554433321 237889
Q ss_pred EEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccceEE-CCEEEEeeeCCeEEEEe
Q 003331 755 CICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPVMI-GGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 755 ~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d 820 (829)
..++.|+.+.+|...+. +...+. ...+.+++-.+.. +..+..++.|..+..|.
T Consensus 404 ~TasyD~t~kiWs~~~~-------------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VTASYDNTVKIWSTRTW-------------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEcccCcceeeecCCCc-------------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999999999976643 111111 2233454433333 34566677788777664
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-09 Score=106.36 Aligned_cols=291 Identities=14% Similarity=0.184 Sum_probs=176.1
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CC-eeeeeeeeecCCC
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CG-EVKCQPVVDAPRQ 571 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~-~~~~~~~~~~~~~ 571 (829)
+.+..||-..++..-..+........+.+.+-+..+.+.+..+.+|+|+.++|.+..+..+ .+ ....+..+. .++
T Consensus 180 h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-eng 258 (626)
T KOG2106|consen 180 HMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENG 258 (626)
T ss_pred cccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEc-CCC
Confidence 4566777655554444444444455667777777788888899999999998877654322 22 223333444 467
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeee
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASL 650 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~ 650 (829)
.+++|..+|.++.|+..+-+.......+ +.+++-..+. ++.|+.|..|..|..||-+ -+.+-..+++...-.--
T Consensus 259 dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr--~GtllSGgKDRki~~Wd~~---y~k~r~~elPe~~G~iR 333 (626)
T KOG2106|consen 259 DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR--DGTLLSGGKDRKIILWDDN---YRKLRETELPEQFGPIR 333 (626)
T ss_pred CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec--CccEeecCccceEEecccc---ccccccccCchhcCCee
Confidence 7999999999999998776665544443 4455444443 4888889999999999833 33333333332211112
Q ss_pred eeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 651 CITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
.+....+.+++|+..+.|.-=+ +++..+-..-.+.........+ .++.+..++.|+.+..|+ +-+++|......+
T Consensus 334 tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~ 409 (626)
T KOG2106|consen 334 TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDP 409 (626)
T ss_pred EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--ChhheeeccCcceEEEcc--CCceeEEEEecCc
Confidence 2333444588888766655433 3332221111111111111111 134566778899999999 6789999887776
Q ss_pred cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce--EECCEE
Q 003331 730 ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV--MIGGRV 807 (829)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~l 807 (829)
..+..+.. .+ .+++|+..|...++|..+. .......- ++.++... .++..+
T Consensus 410 ~~~~~fhp------------sg-~va~Gt~~G~w~V~d~e~~-------------~lv~~~~d-~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 410 AECADFHP------------SG-VVAVGTATGRWFVLDTETQ-------------DLVTIHTD-NEQLSVVRYSPDGAFL 462 (626)
T ss_pred eeEeeccC------------cc-eEEEeeccceEEEEecccc-------------eeEEEEec-CCceEEEEEcCCCCEE
Confidence 65443322 24 8999999999999998753 11111111 22222111 157899
Q ss_pred EEeeeCCeEEEEeccc
Q 003331 808 FVGCRDDYIYCIALET 823 (829)
Q Consensus 808 ~vg~~~g~l~~~d~~t 823 (829)
-+|+.|+.||.|-...
T Consensus 463 Avgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 463 AVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEecCCCeEEEEEECC
Confidence 9999999888886543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-10 Score=106.18 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=152.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...+.|.++++||.+..||..+...+-.++....+ ...++.+ ...+|+|+.||.|..+|+.+|.... ...++.....
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~pl-L~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~c 99 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPL-LDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRC 99 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCce-eeeeccC-CceEEEeccCceEEEEEecCCccee-eccCCCceEE
Confidence 45778999999999999998876665556655544 3455655 4689999999999999999887754 3334444443
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.......+.+++|++|+.|..||+.+....-.+..+..+++ ++-.+++|++|+.+..+..||+.+ -..-.+....
T Consensus 100 i~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~---~~v~g~~LvVg~~~r~v~iyDLRn--~~~~~q~reS 174 (323)
T KOG1036|consen 100 IEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC---MDVSGNRLVVGTSDRKVLIYDLRN--LDEPFQRRES 174 (323)
T ss_pred EEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE---EeccCCEEEEeecCceEEEEEccc--ccchhhhccc
Confidence 44445578899999999999999987444444444443333 233458999999999999999886 3322211111
Q ss_pred Cc--ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC----CEEEEeec-----CC-c-eeecCccccc-CCCeEEEEeeCC
Q 003331 644 VP--AFASLCITSANRHVICCLVDGHVVALD-SSG----SIIWRCRT-----GG-P-IFAGPCTSFA-LPSQVLICSRNG 708 (829)
Q Consensus 644 ~~--~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g----~~~w~~~~-----~~-~-~~~~~~~~~~-~~~~i~~~t~~g 708 (829)
.- ..-+.++.+.....++++.+|.+.+-. .+. +..+.++- .+ . ++....+.+. ..++++.|..||
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 11 113445556667788888999988744 222 22222221 11 1 1111111111 246789999999
Q ss_pred eEEEEeCCCCcEEEEEe
Q 003331 709 SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~ 725 (829)
.|.+||+.+.|.+-++.
T Consensus 255 ~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQLA 271 (323)
T ss_pred eEEEccCcchhhhhhcc
Confidence 99999999887765543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-09 Score=99.13 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=156.9
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeec
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~ 597 (829)
.+..++++|..+.+.+.|..|..||..+|+.+.+.....--.....+......+..++. |..|+.++..+.+.+..+.
T Consensus 18 ~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~ 97 (311)
T KOG1446|consen 18 NSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP 97 (311)
T ss_pred eEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC
Confidence 46778888888888888889999999999998876554222222334334455555554 6789999999999999998
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C--C
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--S 674 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~--~ 674 (829)
.+.....+..+.+.++..+.++.|..++.||++. -+..-......+ ...++.+.+-...++...+.|..|| + +
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~--~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV--KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecC--CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccC
Confidence 8888888888888788899999999999999885 232222222222 1233444444444455555788888 3 2
Q ss_pred CCEEEEeecCCcee-ecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccc---cccccccccccccccccC
Q 003331 675 GSIIWRCRTGGPIF-AGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT---ASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 675 g~~~w~~~~~~~~~-~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 749 (829)
+.+.-.+....+.. --..+.... +..+.++|..+.++.+|+-+|.++-++.....-. ..... .+
T Consensus 174 kgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f-----------tP 242 (311)
T KOG1446|consen 174 KGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF-----------TP 242 (311)
T ss_pred CCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE-----------CC
Confidence 22222222221100 000011222 4468889999999999999999887766433322 11111 23
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003331 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++..|+.||.|++|+.+++
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCC
Confidence 4889999999999999999876
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-10 Score=120.43 Aligned_cols=241 Identities=13% Similarity=0.120 Sum_probs=177.5
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEc-CCCeEEEeec
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKLP 597 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~-~tg~~~w~~~ 597 (829)
+..++.++..+..++.++.+..|+..+++ .+.....+........+.+++..+..++.|+.++.||. ..+..+..+.
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec
Confidence 46678888898889899999999987777 44444334444555567777778999999999999999 6668888888
Q ss_pred cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.+.....+..+.+++..++.|+.|+.+.+||..+ |+.+-.+..+........+..++..++.++.++.+.+|| .+|.
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccC--CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 7777777788888778899999999999999998 888888877777777788888999999999999999999 8887
Q ss_pred EE--EEeecCCceeecCcccc-cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 677 II--WRCRTGGPIFAGPCTSF-ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 677 ~~--w~~~~~~~~~~~~~~~~-~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
.. -............++.+ -....++.++.|+.+..||..+++..-.+.....-....+.. .....+..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 393 (456)
T KOG0266|consen 322 KLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP--------TLSTGGKL 393 (456)
T ss_pred eeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc--------cccCCCCe
Confidence 32 22221111100111122 234578889999999999999998876555433321111000 01233789
Q ss_pred EEEEccCCcEEEEEeecC
Q 003331 754 VCICTSSGSIHILRVNLD 771 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~ 771 (829)
+++|+.++.|++||..++
T Consensus 394 i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred EEEEeCCceEEEEeCCcc
Confidence 999999999999999865
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-10 Score=104.15 Aligned_cols=240 Identities=15% Similarity=0.128 Sum_probs=158.5
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCC-CcEEEE--EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR-SSVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT 547 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t-g~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t 547 (829)
-.++..||. .+..+..||.|+.|.+|+.+. |...-+ ....+ .....+.++++..+++|+-|+.+..||+.+
T Consensus 30 IS~l~FSP~-----~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 30 ISALAFSPQ-----ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred hheeEeccc-----cCceEEecccCCceEEEEEecCCcccchhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 344555662 467777999999999999865 554432 22223 345778999999999999999999999999
Q ss_pred CcEEEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003331 548 GDIYWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 548 G~~~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
|+..-.-...+.++..-.+.. ....|.+||+|.+|..||.+.-+++-+..+.....+.-+. ...+.+++.+..|.+
T Consensus 104 ~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 104 GQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAVVATAERHIAV 180 (347)
T ss_pred CCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeEEEecCCcEEE
Confidence 977654344445555444432 1236789999999999999999999988888776665543 367888999999999
Q ss_pred EEccCCCceEEEeeccCCc--ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC--CEEEEeec-------CCceeecCccc
Q 003331 627 ISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLVDGHVVALD-SSG--SIIWRCRT-------GGPIFAGPCTS 694 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g--~~~w~~~~-------~~~~~~~~~~~ 694 (829)
|++++ +....+.-...- -.-+.++..+.....+|+.+|.+.... ..+ +.-+.+.- ...+++...+.
T Consensus 181 ynL~n--~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLEN--PPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCC--CcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99976 332222111111 113445555666668999999887765 333 33232221 11244443332
Q ss_pred cc-CCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 695 FA-LPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 695 ~~-~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+- ..|.+.....||.+..||.+....+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhh
Confidence 21 3467777778999999997654433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=102.96 Aligned_cols=266 Identities=11% Similarity=0.108 Sum_probs=179.6
Q ss_pred CCCeEEEEecCCCcEEEEECC-CCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAK-RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++..+..|..|..|+.|+.. .-+-.|..+.+...+-..-...++..|+..+.|.+++.||.++|+...++..+..+..
T Consensus 57 P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN 136 (338)
T KOG0265|consen 57 PDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN 136 (338)
T ss_pred CCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence 356677788899999999954 3344577777765544556677888999999999999999999999998888776654
Q ss_pred eeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 563 QPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 563 ~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
+..... .-..|-.|+.|+.+..||..+...+..+...-. ..+..+.+..+.+..|.-|+.|-.||+.. +.......
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq-ltAv~f~d~s~qv~sggIdn~ikvWd~r~--~d~~~~ls 213 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ-LTAVGFKDTSDQVISGGIDNDIKVWDLRK--NDGLYTLS 213 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhcccccee-EEEEEecccccceeeccccCceeeecccc--CcceEEee
Confidence 433222 223455688999999999998776665533222 23344555567899999999999999976 55566666
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C---CCCE-EEEeecC-----CceeecCcccccCCCeEEEEeeCCeEE
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-S---SGSI-IWRCRTG-----GPIFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~---~g~~-~w~~~~~-----~~~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
...........+.++..+..-+.+..+..|| . .++. +-.+... .+.+... ..-....+-+|+.|..+|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs--wsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS--WSPNGTKITAGSADRFVY 291 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee--ccCCCCccccccccceEE
Confidence 6666666677777888888888889999888 3 2222 2222211 1111111 111234577888899999
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEE
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 765 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~ 765 (829)
.||..+-.++++.+......... ...+....+..++.|.+||.
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~-----------~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEV-----------DFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EeecccccEEEEcCCcceeEEEe-----------eecCCCcEEEEeccCceeEe
Confidence 99988778877765433322111 11223677788888887774
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-09 Score=108.75 Aligned_cols=271 Identities=11% Similarity=0.102 Sum_probs=162.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
.+++++.|+.|+.||..+++.+..+..+..+. ...+.+++..+|+ ++.++.++.||..+++.+..+..+... ....+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP-ELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc-cEEEE
Confidence 45567779999999999999888877554443 3455666666764 567789999999999887766544332 33456
Q ss_pred ecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC-eEEEEc-CCCCEEEEeecCC
Q 003331 609 DEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-~i~~~d-~~g~~~w~~~~~~ 685 (829)
+++++.+|+++ .++.+..||+.+ ++.+........ .....+.+++..++++..++ .+..+| .+++.......+.
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~--~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET--RKVLAEIPVGVE-PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC--CeEEeEeeCCCC-cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 66667788765 478899999987 666655543322 23456666777777776654 456678 6776654433222
Q ss_pred ceeecCcccccCC-CeEEEEe-eCCeEEEEeCCCCcEEEEEecCCcccc-ccccccccccccccccCCCcEEEEE-ccCC
Q 003331 686 PIFAGPCTSFALP-SQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVCIC-TSSG 761 (829)
Q Consensus 686 ~~~~~~~~~~~~~-~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G 761 (829)
.... +....+ ..+++++ .+|.|+.||.++++.+-.+........ ...... ......++..++++ ..++
T Consensus 158 ~~~~---~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 158 RPRF---AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV-----GIKLTKDGKTAFVALGPAN 229 (300)
T ss_pred CccE---EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc-----ceEECCCCCEEEEEcCCCC
Confidence 2111 112223 4566665 488999999999987654432211000 000000 00012235666664 3466
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-eCCeEEEEeccccccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIYCIALETQHLE 827 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~-~~g~l~~~d~~tg~~~ 827 (829)
.+.+||.+++. ....... +.......+ .+..||++. .+|.|..||.++++..
T Consensus 230 ~i~v~d~~~~~-------------~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 230 RVAVVDAKTYE-------------VLDYLLV-GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI 284 (300)
T ss_pred eEEEEECCCCc-------------EEEEEEe-CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE
Confidence 79999987541 1111111 111222222 455778764 5899999999998853
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-10 Score=117.70 Aligned_cols=309 Identities=14% Similarity=0.145 Sum_probs=203.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++..|+.+..+..+..|+..+|+++...+. +........+.+.+..+..|+.|+.+..||...+.+...+..++.+.++
T Consensus 73 d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVss 152 (775)
T KOG0319|consen 73 DEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSS 152 (775)
T ss_pred CccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEE
Confidence 477899999999999999999988754443 3333345667777778889999999999999999999999887888888
Q ss_pred eeeecC--CCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 564 PVVDAP--RQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
..+.+. ...++.|..|+.+++||..++.. +.....+.+-..+..+..++..++.++.|..++.||..+ -+.+-..
T Consensus 153 l~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~--~~~l~~l 230 (775)
T KOG0319|consen 153 LLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQ--YKKLKTL 230 (775)
T ss_pred EEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhh--hhhhhee
Confidence 777653 34478899999999999987654 222233334445555555567788888899999999764 3333322
Q ss_pred ccCCcceeeeeeeec-----CCEEEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 641 ELEVPAFASLCITSA-----NRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
..... ..+.....+ +.+++..+.+|.+..+| .+++.+.+.... .+-+ ..+......+.++..+.+..++.|
T Consensus 231 p~ye~-~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~-~~~~~~~~~~~~l~vtaeQnl~l~ 308 (775)
T KOG0319|consen 231 PLYES-LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI-DHLLAIESMSQLLLVTAEQNLFLY 308 (775)
T ss_pred chhhh-eeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh-hcceeccccCceEEEEccceEEEE
Confidence 22221 123333333 45777777788899999 777776544322 1111 111122234567777788889999
Q ss_pred eCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003331 714 EQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 714 d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
|.++.++.-.+-.. ..+...-+.. +.++.++++++.+.+.+|+..+-. -.-+.-
T Consensus 309 d~~~l~i~k~ivG~ndEI~Dm~~lG-----------~e~~~laVATNs~~lr~y~~~~~~--------------c~ii~G 363 (775)
T KOG0319|consen 309 DEDELTIVKQIVGYNDEILDMKFLG-----------PEESHLAVATNSPELRLYTLPTSY--------------CQIIPG 363 (775)
T ss_pred EccccEEehhhcCCchhheeeeecC-----------CccceEEEEeCCCceEEEecCCCc--------------eEEEeC
Confidence 99888876443222 2222222221 237899999999999999776431 111223
Q ss_pred CCcccccceE-ECC-EEEEeeeCCeEEEEecc
Q 003331 793 QGDIFSSPVM-IGG-RVFVGCRDDYIYCIALE 822 (829)
Q Consensus 793 ~~~~~~s~~~-~~~-~l~vg~~~g~l~~~d~~ 822 (829)
+.+.+.+..+ ..| .|..|+.|..+..|..+
T Consensus 364 H~e~vlSL~~~~~g~llat~sKD~svilWr~~ 395 (775)
T KOG0319|consen 364 HTEAVLSLDVWSSGDLLATGSKDKSVILWRLN 395 (775)
T ss_pred chhheeeeeecccCcEEEEecCCceEEEEEec
Confidence 3345555553 344 66668889999888664
|
|
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-11 Score=94.29 Aligned_cols=70 Identities=47% Similarity=0.625 Sum_probs=61.3
Q ss_pred HHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC--CeEEEeCc-ccCCCC
Q 003331 184 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP--NRFVFMDS-LPMTSS 260 (829)
Q Consensus 184 ~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p--~~~~~~~~-lP~t~~ 260 (829)
|||++|.+||+|.+|+|++.++...+..++|++++ ..++|+++++++||.|++| ..++.+++ ||+|++
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~---------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~ 71 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL---------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS 71 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE---------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe---------eecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence 79999999999999999999998888999999988 1278999999999999999 66666677 999999
Q ss_pred CC
Q 003331 261 GK 262 (829)
Q Consensus 261 GK 262 (829)
||
T Consensus 72 GK 73 (73)
T PF13193_consen 72 GK 73 (73)
T ss_dssp SS
T ss_pred CC
Confidence 98
|
... |
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=106.20 Aligned_cols=268 Identities=11% Similarity=0.118 Sum_probs=181.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++-.|+.++.|+.=..-+-.||.-+-+|..+...+.++++..+.-....++.|-+-..||+-||..+..++..- +.-+.
T Consensus 28 ~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkh-ivk~~ 106 (334)
T KOG0278|consen 28 DGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKH-IVKAV 106 (334)
T ss_pred CceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhh-eeeeE
Confidence 34456666777766666677887666777776666677776554445556667677889999999998887544 44445
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
.++.+.+.+++|+.+.-++.||.+.-+. .-.+..+ +.+.....+. .+..++..+.+++|..||..+ |+...+...
T Consensus 107 af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rT--gt~v~sL~~ 183 (334)
T KOG0278|consen 107 AFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRT--GTEVQSLEF 183 (334)
T ss_pred EecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEecc--CcEEEEEec
Confidence 6777788999999998888888764321 1111111 2222222222 357788889999999999998 998888877
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+.+. .+..++.+ +.++.-++.++|..+| .+-.++-.+..+.++.+....+ ..+...+|..|..+|.||-.||..+
T Consensus 184 ~s~V-tSlEvs~d-G~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P--~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 184 NSPV-TSLEVSQD-GRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP--KKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred CCCC-cceeeccC-CCEEEEecCceeEEeccccccceeeccCccccccccccC--CCceEEecCcceEEEEEeccCCcee
Confidence 6664 45555544 4555556678899999 7767777777776665554322 2345667788999999999999987
Q ss_pred EEEe--cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 722 WEYS--VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 722 w~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
-.+. ..+++.+..+. +++....+|+.||+|.+|....++
T Consensus 260 ~~~nkgh~gpVhcVrFS------------PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFS------------PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eecccCCCCceEEEEEC------------CCCceeeccCCCceEEEEEecCCC
Confidence 6642 23344333222 336777789999999999876553
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=115.11 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=165.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-- 559 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-- 559 (829)
+.|..+.+|+||.+| ++.||..+|+..-.-..+........+.+-.+.+|+|+++| ++..++++ |.+..-+.
T Consensus 171 v~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~sn~~~~l 244 (671)
T COG3292 171 VFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRASNWGPML 244 (671)
T ss_pred eeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccccccCCCC
Confidence 457889999999998 88899999997654322221111233444557899999666 88888655 55433211
Q ss_pred --eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee-ccC--CcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 560 --VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-PCG--GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 560 --~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~-~~~--~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
-+......+..+.+|+|+.+| +..+....+.+.... +.+ -+...+.. .+.++.+|+++.+| +..+.... -
T Consensus 245 p~~~I~ll~qD~qG~lWiGTenG-l~r~~l~rq~Lq~~~~~~~l~~S~vnsL~-~D~dGsLWv~t~~g-iv~~~~a~--w 319 (671)
T COG3292 245 PSGNILLLVQDAQGELWIGTENG-LWRTRLPRQGLQIPLSKMHLGVSTVNSLW-LDTDGSLWVGTYGG-IVRYLTAD--W 319 (671)
T ss_pred cchheeeeecccCCCEEEeeccc-ceeEecCCCCccccccccCCcccccccee-eccCCCEeeeccCc-eEEEecch--h
Confidence 122334556788999999876 444443433332211 111 11122233 33468899999877 44444332 1
Q ss_pred eEEEeeccC-Ccc--eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE-eecCCceeecCcccccCCCeEEEEeeCCe
Q 003331 635 HTLWLHELE-VPA--FASLCITSANRHVICCLVDGHVVALD-SSGSIIWR-CRTGGPIFAGPCTSFALPSQVLICSRNGS 709 (829)
Q Consensus 635 ~~~w~~~~~-~~~--~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~~g~ 709 (829)
...-.+... .-. .........+..++..+..|.+.+.+ .+|..+-. +..-+...+.. .++.++.+|+++.+.+
T Consensus 320 ~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~--~~d~~g~lWlgs~q~G 397 (671)
T COG3292 320 KRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTT--LEDSRGRLWLGSMQNG 397 (671)
T ss_pred hheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchh--hhccCCcEEEEecccc
Confidence 110001110 000 01112222355667776677788888 88876533 22222222222 2455889999999978
Q ss_pred EEEEeCCC-CcEEEEEecCCcccccc--ccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccccccee
Q 003331 710 IYSFEQES-GNLLWEYSVGDPITASA--YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQE 786 (829)
Q Consensus 710 l~~~d~~t-G~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~ 786 (829)
+..|+.++ +..+-. .+...++. .+.+ ..++.+|+|+.+| |...+++.+.--.. -.
T Consensus 398 Lsrl~n~n~~avlde---~agl~ss~V~aive----------d~dnsLWIGTs~G-lvk~~pe~~~v~n~--------ln 455 (671)
T COG3292 398 LSRLDNKNEWAVLDE---DAGLPSSEVSAIVE----------DPDNSLWIGTSGG-LVKRDPESGRVLNL--------LN 455 (671)
T ss_pred hhhhccCCccccccc---ccCCcccceeeeee----------cCCCCEEEeccCC-eEecCccccchhcc--------cc
Confidence 99999777 333211 11111111 1111 1155699999887 55555554311000 00
Q ss_pred eeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccc
Q 003331 787 FAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 787 ~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+....++++.+...-+ .++.||++..+| ++.|+.+..-+
T Consensus 456 ~~~~~l~~s~~~~lg~~~~g~Lw~a~g~g-va~~~sq~~~~ 495 (671)
T COG3292 456 PGSHGLDGSRVEQLGLGPDGRLWLAAGSG-VAAWESQRRMF 495 (671)
T ss_pred cccCcCCcchhhhhccCCCCceEEEecce-eeeecccccee
Confidence 1111223333332222 478999998765 78888765544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.8e-10 Score=106.97 Aligned_cols=239 Identities=14% Similarity=0.093 Sum_probs=156.5
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGG 600 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~ 600 (829)
..+.++.-.+++++.|++|++||..||++.-....+........++..+..+...+.|-.+..||..+- +++.....+.
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~ 193 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHE 193 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcc
Confidence 344455456677778999999999999986555444433444556656666777776655677775541 1111122234
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
...+++++-+.++.|..++.|..+..|+.++ |-.+.++.....-.-...+..++..+..++.+.++.+|- .+++..-
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~t--g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~ 271 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDT--GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA 271 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEeccc--ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh
Confidence 5667777777789999999999999999998 888877766555444555555555555666778888877 5552111
Q ss_pred EeecCC---------ceeecCcccccC-----CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003331 680 RCRTGG---------PIFAGPCTSFAL-----PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 680 ~~~~~~---------~~~~~~~~~~~~-----~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
.+.... +..+.|.+.... ...+..++.|+.|..||..+|..+.++....+-.....+.
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-------- 343 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-------- 343 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc--------
Confidence 110000 111122222111 2367788999999999999999998887655544333332
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCcc
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDVT 773 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~ 773 (829)
+.|.+|+...+|++|.+||.+++..
T Consensus 344 ---p~Gkyi~ScaDDktlrvwdl~~~~c 368 (406)
T KOG0295|consen 344 ---PGGKYILSCADDKTLRVWDLKNLQC 368 (406)
T ss_pred ---CCCeEEEEEecCCcEEEEEecccee
Confidence 2388999999999999999997743
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-10 Score=112.26 Aligned_cols=273 Identities=12% Similarity=0.061 Sum_probs=172.8
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
-+++.+..|..|.+|..||.++-........+.+. -.++.-+...++.|+.|.++..||.+||+++.++-.+-+..-.
T Consensus 205 YDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS--VLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLh 282 (499)
T KOG0281|consen 205 YDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS--VLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLH 282 (499)
T ss_pred ecchhhhcccccCceEEeccccHHHHHhhhcCCCc--EEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEE
Confidence 36778999999999999999887666554444432 2344455568889999999999999999998876555444444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEE-eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+. +|++++.+.|..+..||...-..+- ..-.-+...+..+++-++..|+.++.|.++..|+..+ ++.+-....
T Consensus 283 lrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st--~efvRtl~g 358 (499)
T KOG0281|consen 283 LRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST--CEFVRTLNG 358 (499)
T ss_pred EEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccc--eeeehhhhc
Confidence 4444 4899999999999999976532110 0001122222223333447888888899999999887 877765544
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
+.... .+....+..++.|+.|.+|..|| ..|..+--.+...... .++.+ .+..|..|.+||+|..||..++.--
T Consensus 359 HkRGI--AClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv--RciRF-d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 359 HKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV--RCIRF-DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ccccc--eehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhh--hheee-cCceeeeccccceEEEEecccccCC
Confidence 43322 22333466677788899999999 8888765444332221 22333 3568999999999999998776421
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.- ...........++.- ..-....+.-.|...+.+.+|.+||..++
T Consensus 434 ra---~~~~~Cl~~lv~hsg-RVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 434 RA---PASTLCLRTLVEHSG-RVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred cc---cccchHHHhhhhccc-eeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 10 000000000000000 00001223567788888999999998865
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=109.28 Aligned_cols=278 Identities=17% Similarity=0.138 Sum_probs=182.6
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE---EEEe---------------cCCeeeeeeeeecCCCEEEEeccCC
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ---------------TCGEVKCQPVVDAPRQLIWCGSHDH 580 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~---w~~~---------------~~~~~~~~~~~~~~~~~i~~gs~~g 580 (829)
..++++++++.++|.++.+++|..|+..+|+.. |... .+..-..+.++..++.++.+|..|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 446778888889999999999999999999843 3221 1111223455667788899999999
Q ss_pred eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE
Q 003331 581 NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI 660 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~ 660 (829)
.+..||..|++.+..+..+.....+.++......+|.++.|..+-.|+++. ...+-+...+............+..+-
T Consensus 225 ~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~--~s~vetlyGHqd~v~~IdaL~reR~vt 302 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ--LSYVETLYGHQDGVLGIDALSRERCVT 302 (479)
T ss_pred eEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--hHHHHHHhCCccceeeechhcccceEE
Confidence 999999999999888777766777777877678899999999999998775 222222222222333344444456667
Q ss_pred EEeeCCeEEEEc-C-CCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc-ccc
Q 003331 661 CCLVDGHVVALD-S-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YID 737 (829)
Q Consensus 661 ~~~~~g~i~~~d-~-~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~ 737 (829)
+|..|.++..|. . .-++++.-. . .+..|+....+..+..|+.+|.|+.|+..+.+++.......++...+ .+.
T Consensus 303 VGgrDrT~rlwKi~eesqlifrg~-~---~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~ 378 (479)
T KOG0299|consen 303 VGGRDRTVRLWKIPEESQLIFRGG-E---GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVN 378 (479)
T ss_pred eccccceeEEEeccccceeeeeCC-C---CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccc
Confidence 777788888887 3 334443322 1 12334445567789999999999999999999998877655543321 000
Q ss_pred cccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEee
Q 003331 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGC 811 (829)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~ 811 (829)
.+.=+..-+.....++++.|+.+|.|.+|....+.. ..+.+..+++.|-+.+-... .+..|++|+
T Consensus 379 ~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 379 GNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeeEecccCceEEecCCCCceEEEEecCCcc---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence 000001112344578999999999999998886621 12445555555544332222 344588875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-09 Score=113.02 Aligned_cols=315 Identities=13% Similarity=0.113 Sum_probs=203.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEE-EEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-CC
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVL-WEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CG 558 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~-w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~ 558 (829)
.+..+..||+...+ .|..+|..||+.. ....... .......+.+|+..++......-+..|+..+|+++..... +.
T Consensus 27 ~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He 105 (775)
T KOG0319|consen 27 WSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE 105 (775)
T ss_pred ECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC
Confidence 34456677776654 5888999999874 2111111 1223456677888899988888899999999988644333 33
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCE--EEEEecCCeEEEEEccCCCceE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV--LYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~--l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
.......+++.++.+-+|+.|+.+..||.+.+.+...+...+.+.++..+.++..+ ++.|..|+.+++||.++ +..
T Consensus 106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~--~~t 183 (775)
T KOG0319|consen 106 APVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLND--KRT 183 (775)
T ss_pred CCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEccc--Cch
Confidence 34444566777788888999999999999999999999887888888877664443 67888999999999986 332
Q ss_pred -EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccc---cCCCeEEEEeeCCeEE
Q 003331 637 -LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSF---ALPSQVLICSRNGSIY 711 (829)
Q Consensus 637 -~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~---~~~~~i~~~t~~g~l~ 711 (829)
+-....+.....+..+..++..++.++.|..+++|| .+-+..-..+....+-+...... ..+..++..+.+|.+.
T Consensus 184 cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~ 263 (775)
T KOG0319|consen 184 CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQ 263 (775)
T ss_pred HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEE
Confidence 222223333345667777788888888899999999 55554444443333322221111 1124577777889999
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE 791 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 791 (829)
.||.++++.+.+...+.. +-.+. .......+.+++.+.+-.+.++|.++.. +...+-
T Consensus 264 ~~d~es~~~~~~~~~~~~----~e~~~------~~~~~~~~~~l~vtaeQnl~l~d~~~l~-------------i~k~iv 320 (775)
T KOG0319|consen 264 YWDSESGKCVYKQRQSDS----EEIDH------LLAIESMSQLLLVTAEQNLFLYDEDELT-------------IVKQIV 320 (775)
T ss_pred EEecccchhhhhhccCCc----hhhhc------ceeccccCceEEEEccceEEEEEccccE-------------Eehhhc
Confidence 999999998776554431 10111 1112234556666677889999877542 221111
Q ss_pred -cCCcccccceE---ECCEEEEeeeCCeEEEEeccc
Q 003331 792 -LQGDIFSSPVM---IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 792 -~~~~~~~s~~~---~~~~l~vg~~~g~l~~~d~~t 823 (829)
.++++ ...-. .++.+.++|..+.+..|+..+
T Consensus 321 G~ndEI-~Dm~~lG~e~~~laVATNs~~lr~y~~~~ 355 (775)
T KOG0319|consen 321 GYNDEI-LDMKFLGPEESHLAVATNSPELRLYTLPT 355 (775)
T ss_pred CCchhh-eeeeecCCccceEEEEeCCCceEEEecCC
Confidence 11222 11112 347899999888888887654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-08 Score=98.48 Aligned_cols=265 Identities=15% Similarity=0.177 Sum_probs=171.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEE---EcC-CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-C
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEI---KLE-GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-G 558 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~---~~~-~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~ 558 (829)
..+.++.+....+.++.|++.+|.+.-+. ... .....+.++..+ +.++.|..+|.|+.|+..+.++......+ +
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g 288 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN-GDVITGDSGGNILIWSKGTNRISKQVHAHDG 288 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCC-CCEEeecCCceEEEEeCCCceEEeEeeecCC
Confidence 34555666666677999999887665432 222 234456677665 46889999999999998777665544444 3
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
.+.+-.+. .+|.|+.|..|..|..|| .+-+.+...+.+...-..-.+.+..+-+|+||..+.|.-=++++ +..+-
T Consensus 289 gv~~L~~l--r~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~--~f~~~ 363 (626)
T KOG2106|consen 289 GVFSLCML--RDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN--GFTLT 363 (626)
T ss_pred ceEEEEEe--cCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC--CceEE
Confidence 44433333 457888899999999999 44444444444332222223444445599999877766545554 32222
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
... +.......+..++.+.+..++.++.+..|+ +.++.|......+..... +...|.+.+|+..|..+.+|.++-
T Consensus 364 v~g-h~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~---fhpsg~va~Gt~~G~w~V~d~e~~ 438 (626)
T KOG2106|consen 364 VQG-HGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECAD---FHPSGVVAVGTATGRWFVLDTETQ 438 (626)
T ss_pred EEe-cccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEee---ccCcceEEEeeccceEEEEecccc
Confidence 111 111223344455667778888899999998 668899988776665554 333458999999999999999986
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++-......++... ...+++.++++|+.|+.||+|..+.+
T Consensus 439 ~lv~~~~d~~~ls~v------------~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 439 DLVTIHTDNEQLSVV------------RYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eeEEEEecCCceEEE------------EEcCCCCEEEEecCCCeEEEEEECCC
Confidence 655433333333322 23345999999999999999987644
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9e-10 Score=108.44 Aligned_cols=270 Identities=13% Similarity=0.050 Sum_probs=172.7
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcC-CCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYL-TGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~-tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..++++|+++..++.|.+...|+.. +++ ++.+...+....+-..+++++.++++.+.+..+..||..+|.....+..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 4566777788888888776666532 333 2334444444555567788888998888888899999999999887766
Q ss_pred C-CcccccceeecCCCEEEEEecCCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CC
Q 003331 599 G-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT--LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS 674 (829)
Q Consensus 599 ~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~ 674 (829)
+ +...++.+..+++-.+++|+.++.++.||.+ |.. .|+... .+.....++..++..++..+.+..+..++ .+
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD---gn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD---GNILGNWEGVR-DPKVHDLAITYDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCC---cchhhcccccc-cceeEEEEEcCCCcEEEEEecccceeeechhh
Confidence 5 4455666777777889999999999999988 444 354322 24456778888999999999999999998 44
Q ss_pred CCEEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccccc--CCC
Q 003331 675 GSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCL--SID 751 (829)
Q Consensus 675 g~~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 751 (829)
-...-..+...++.+.. ...++. +.+.-.+..+..||.+..+++.+|.....-. +..++|. .++
T Consensus 386 ~~dr~lise~~~its~~---iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~----------fiIrSCFgg~~~ 452 (519)
T KOG0293|consen 386 RVDRGLISEEQPITSFS---ISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH----------FIIRSCFGGGND 452 (519)
T ss_pred hhhhccccccCceeEEE---EcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc----------eEEEeccCCCCc
Confidence 33222233344443332 223444 4444457788999988766665554222110 1112221 125
Q ss_pred cEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc----ccccceEECCEEEEeeeCCeEEEEecc
Q 003331 752 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD----IFSSPVMIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~l~vg~~~g~l~~~d~~ 822 (829)
.++..|+.|+.||+|+..+| +.+....-+.. +...|. ....+-.++.||.+..|.+.
T Consensus 453 ~fiaSGSED~kvyIWhr~sg-------------kll~~LsGHs~~vNcVswNP~-~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISG-------------KLLAVLSGHSKTVNCVSWNPA-DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceEEecCCCceEEEEEccCC-------------ceeEeecCCcceeeEEecCCC-CHHHhhccCCCCeEEEecCC
Confidence 78999999999999998876 22222111111 111221 12345557788999998765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=105.69 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=172.9
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
++|-.++.+|.|+.=..-+-+||.=+-+|..+....-+..+..+.-....++.|=.-..||+-||..+..+.. ..+.-+
T Consensus 27 p~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~h-khivk~ 105 (334)
T KOG0278|consen 27 PDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKA 105 (334)
T ss_pred CCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhh-hheeee
Confidence 4544566667666655555566665555555433322223322111222233444556788889988877653 345556
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
..++.+.++++.|+.+..+.+||.+.... +.-.+......+-....+..++.++..+.+++|..|| .+|+.+-.....
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC
Confidence 66777778899998888888888775211 1112222222223444555677888888999999999 999999888877
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
.++.+.- ...+|.++..++.+.|..||+++-.++-.++.+-++.+..... ..+.+++|..|+.+|
T Consensus 185 s~VtSlE---vs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P------------~k~~fVaGged~~~~ 249 (334)
T KOG0278|consen 185 SPVTSLE---VSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP------------KKEFFVAGGEDFKVY 249 (334)
T ss_pred CCCccee---eccCCCEEEEecCceeEEeccccccceeeccCccccccccccC------------CCceEEecCcceEEE
Confidence 7766554 2347788888888999999999988887888777765543333 367888899999999
Q ss_pred EEEeecCccccccccccccceeeeee--ccCCcccccceEECCEEEE-eeeCCeEEEEeccccc
Q 003331 765 ILRVNLDVTGKENQSKDHMVQEFAKL--ELQGDIFSSPVMIGGRVFV-GCRDDYIYCIALETQH 825 (829)
Q Consensus 765 ~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~l~v-g~~~g~l~~~d~~tg~ 825 (829)
.||.++| +.+..+ ...|.+..--..=+|.+|. |+.||.|..|....++
T Consensus 250 kfDy~Tg-------------eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 250 KFDYNTG-------------EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEeccCC-------------ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999987 333332 1223322111011566665 7889999999765544
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=106.87 Aligned_cols=276 Identities=14% Similarity=0.120 Sum_probs=191.0
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE-ecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF-QTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~-~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
..+.+++.+.+.+.++-.+|.|-.|++..+=..-.. ..+. ......++. +++.++..+.+|.|..||+.+++.+..+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEe
Confidence 346777777788999999999999998875333222 2221 223334444 5788999889999999999999999999
Q ss_pred ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
+..+..+-++++.+....+.+|..+|.++.++..+ ++......+.. ....+.....++..++.|+.||.|.+|| .
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p--~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP--DKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCC--ceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 88776666677777788899999999888888776 77666554432 2234555666677799999999999999 8
Q ss_pred CCCEEEEeec--CC-----c--eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccc
Q 003331 674 SGSIIWRCRT--GG-----P--IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKL 744 (829)
Q Consensus 674 ~g~~~w~~~~--~~-----~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 744 (829)
.|..+..... .+ + +++. ....++.|..|...|.|..||..+|.++-.+.....-..+..+.+
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv---~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~------ 255 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSV---LFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD------ 255 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEE---EEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC------
Confidence 8877663221 11 1 1222 234678899999999999999999988755544333222222222
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEe
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d 820 (829)
+++.+++++.|+.+..|...++...|. ......+++..+.+..+.+..++.|.+|..|+.-.
T Consensus 256 -----~~d~vfsaGvd~~ii~~~~~~~~~~wv---------~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 256 -----NEDRVFSAGVDPKIIQYSLTTNKSEWV---------INSRRDLHAHDVRSMAVIENALISGGRDFTLAICS 317 (691)
T ss_pred -----CCCeEEEccCCCceEEEEecCCcccee---------eeccccCCcccceeeeeecceEEecceeeEEEEcc
Confidence 278999999999999998775533210 11122345555666667778899999988877643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=108.76 Aligned_cols=274 Identities=15% Similarity=0.101 Sum_probs=160.2
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC-eEEEEEcCCCeEEE-eeccCCcccccceeecCCCEE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH-NLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g-~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l 615 (829)
..+.+||++||...|+|...........-.-...++..+.... .|..|........- +.-+.+.+ .....++.+..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v-~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV-HALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccce-eeeecCCCceEE
Confidence 4589999999999999976533222111111224455554332 34444433221111 12222322 223334434556
Q ss_pred EEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-------CC--CEEEEeecCC
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-------SG--SIIWRCRTGG 685 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g--~~~w~~~~~~ 685 (829)
+.|+..|.||+|.+.+ |..+-....+-.......++.++..++.|+.||.|.+|. . ++ +.+..+....
T Consensus 97 ~ag~i~g~lYlWelss--G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Ht 174 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSS--GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHT 174 (476)
T ss_pred EeecccCcEEEEEecc--ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCc
Confidence 6666899999999998 987765544444445667777888999999999998875 1 11 2222222211
Q ss_pred -ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEE
Q 003331 686 -PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
++...-+-....+.++|..+.|..+.+||...|.++-+...+..+.+..... .+..+|+|+.+|.|+
T Consensus 175 lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDp------------ae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 175 LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDP------------AERVVYIGTEEGKIF 242 (476)
T ss_pred ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcc------------cccEEEecCCcceEE
Confidence 1111111112245689999999999999999999988877776654433222 288999999999999
Q ss_pred EEEeecCc--cccccc--cccccceeeeeeccCC-cccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 765 ILRVNLDV--TGKENQ--SKDHMVQEFAKLELQG-DIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 765 ~~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
..+...-. ....+. ....+++........+ ..++...+ ++..|..|+.||.+-.||..+...
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 88765321 110000 0011111111111112 23444444 456778899999999999987664
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-09 Score=109.59 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=166.8
Q ss_pred ccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003331 472 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 472 ~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
|+++--|+ .-.+..+-.+|.|..||-+|....-.+...+-..-++.+....+-+++|+.|..|..|+..|++.+
T Consensus 17 KsVd~HPt------ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 17 KSVDFHPT------EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV 90 (794)
T ss_pred eeeecCCC------CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence 55665554 445666777899999999988887777766544445556666678999999999999999999999
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEc
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~ 629 (829)
..|+.+....-+..+.+..-.++++|+|-.|.+||-+.+ .+...+..+....-..++.+ +.++...++.|+++-+|.+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 999998877777778888888999999999999996654 33444555555555555554 3456777888999988887
Q ss_pred cCCCceEEEeeccCCcceeeeeeeec--CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCCCeEEEEe
Q 003331 630 KALPFHTLWLHELEVPAFASLCITSA--NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICS 705 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t 705 (829)
.. -.+..+.+.+............ .-++..|+.|-.+.+|| ++...+-+......-.+.. +.+.. -.|..|+
T Consensus 171 gs--~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l--piiisgs 246 (794)
T KOG0276|consen 171 GS--PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL--PIIISGS 246 (794)
T ss_pred CC--CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC--cEEEEec
Confidence 65 3344445444444444444432 23788888888999999 8776664443222111111 11121 2578899
Q ss_pred eCCeEEEEeCCCCcEEE
Q 003331 706 RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w 722 (829)
.||++..|+..|-++.-
T Consensus 247 EDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEK 263 (794)
T ss_pred CCccEEEecCcceehhh
Confidence 99999999988865543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-09 Score=104.78 Aligned_cols=269 Identities=11% Similarity=0.074 Sum_probs=168.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC-cEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~ 563 (829)
..-.++.+|.++.|++||..||++....+.+........+...|..++..+.|=.+..||..+- +.+.....+....++
T Consensus 119 ~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~ 198 (406)
T KOG0295|consen 119 SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSS 198 (406)
T ss_pred CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceee
Confidence 3455777889999999999999986555555444556677777777777776666777776542 222222334455666
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE-EEEecCCeEEEEEccCCCce-------
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL-YVASTSGRLTAISVKALPFH------- 635 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l-~v~t~~g~l~~~~~~~~~g~------- 635 (829)
+.+-+.++.|...+.|..+.+|+..+|-++.++..+....-...+.. +++| ..++.+..|..|-..+...+
T Consensus 199 V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE 277 (406)
T KOG0295|consen 199 VFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHE 277 (406)
T ss_pred EEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccc
Confidence 77777778999999999999999999999998877665444444443 3444 44555677888887762111
Q ss_pred -----EEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCC
Q 003331 636 -----TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 636 -----~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
..|......+......... .+..+..++.|+.|..|| ++|..+.+.....+-.....+. ..+..|+.+..|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~-p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS-PGGKYILSCADDK 356 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEc-CCCeEEEEEecCC
Confidence 1122111111100000000 123677888999999999 9999998876544322221111 1244677888899
Q ss_pred eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 709 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.|.+||.++++-.-..+.+..+..+.-+.. ...++..|+-+-.+.+|
T Consensus 357 tlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-----------~~p~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-----------TAPYVVTGSVDQTVKVW 403 (406)
T ss_pred cEEEEEeccceeeeccCCCcceeEEEecCC-----------CCceEEeccccceeeee
Confidence 999999999887655554444333322221 13366666666666555
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.1e-09 Score=111.72 Aligned_cols=269 Identities=10% Similarity=0.057 Sum_probs=183.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...-.|.++-|+|.|..||-.-|.++-+|.-+++.+-...+.+.+..++.|+.|-.|..|+-++.+++.+...+-...-+
T Consensus 19 P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 19 PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEE
Confidence 34556777889999999999999999888888777667888888888889999999999999999998877666555555
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+...--.|+.+|+|.+|+.|+-.+++++-....+....-...+.+..+.|+.++.|-+|.+||+.. -..-.....
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG---LRkk~~~pg 175 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG---LRKKNKAPG 175 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc---hhccCCCCC
Confidence 56665556688899999999999999999988877766554445566568899999999999999763 221111111
Q ss_pred ------------Cccee------------------eeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC----ceee
Q 003331 644 ------------VPAFA------------------SLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG----PIFA 689 (829)
Q Consensus 644 ------------~~~~~------------------s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~----~~~~ 689 (829)
...+. -.++.+.--.++.|+.|..|.+|.-+-...|...+-. ++.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 01111 1111122234555666667777764445567766432 2222
Q ss_pred cCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 690 GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 690 ~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
. +.....+.|...+.|+.|..||....+-+-.+...+.-+....... ...++.+..|+++.+|..+
T Consensus 256 v--lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP------------~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 256 V--LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP------------ELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred E--EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC------------CcceeeeecCCceEEEEEc
Confidence 1 1122245677888999999999887777766665555444333332 3445566667777777655
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-09 Score=106.52 Aligned_cols=232 Identities=12% Similarity=0.089 Sum_probs=158.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcE---EEEEE---------------cCCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSV---LWEIK---------------LEGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~---~w~~~---------------~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
..+++.++|.++.++.|..|+..+|+. +|..+ .+..-..+.+++.|+.++..|..|..|..|
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw 229 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIW 229 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEe
Confidence 345688999999999999999999983 34331 111223467888999999999999999999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEEEecCC
Q 003331 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g 622 (829)
|..|++.+..+..+.....+.++......+|.++.|..+..|+.+.-..+-++..+.. +.+.-+++. ...+-+|..|.
T Consensus 230 ~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDr 308 (479)
T KOG0299|consen 230 DCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSR-ERCVTVGGRDR 308 (479)
T ss_pred cCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcc-cceEEeccccc
Confidence 9999999887776666666677777778899999999999999876444333322322 222222322 34566777899
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-------c--
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-------C-- 692 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-------~-- 692 (829)
++..|++... -+.+ +..+...+...++ .++..++.|+.+|.|+.|+ ...++++......++...+ .
T Consensus 309 T~rlwKi~ee-sqli--frg~~~sidcv~~-In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit 384 (479)
T KOG0299|consen 309 TVRLWKIPEE-SQLI--FRGGEGSIDCVAF-INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT 384 (479)
T ss_pred eeEEEecccc-ceee--eeCCCCCeeeEEE-ecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee
Confidence 9999987541 2222 2222223333444 3677889999999999999 8888888776543332221 0
Q ss_pred -cc-ccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 693 -TS-FALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 693 -~~-~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+. ....+.+..|+.+|.|..|-..+|
T Consensus 385 sla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 385 SLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeEecccCceEEecCCCCceEEEEecCC
Confidence 11 112345667788899999988877
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-08 Score=97.17 Aligned_cols=265 Identities=13% Similarity=0.133 Sum_probs=168.2
Q ss_pred EEEEecCCCcEEEEECCC------CcE------EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003331 488 YLFVGSHSHKFICADAKR------SSV------LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~t------g~~------~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
.+++|+..+.|+.|++.- ..+ +|.+..+.... .+++.++-++..|+.|.+|..||..+.+.+-..-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~si--tavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSI--TALAVSGPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccce--eEEEecceeEeccCCCCcEEEEeccchhhhccee
Confidence 478899888888887532 122 44444444433 3444566789999999999999988766655444
Q ss_pred cCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 556 TCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 556 ~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+.....+..+... ...++.|+.||.+.+|+...-.++-.+..+..-.....+.+.+...+..+.|+.+..||+-+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~-- 158 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR-- 158 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc--
Confidence 44333333344432 23688999999999999888777666666555566677777666666667789999999988
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
|+.-....+.... ......+.+.+.+++.. ..|-+|- .+-++.-+...+..+...+ ....+.+.+|..++.+..
T Consensus 159 Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~~~~r~l~~~---~l~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 159 GRVAFVLNLKNKA-TLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIENPKRILCAT---FLDGSELLVGGDNEWISL 233 (362)
T ss_pred CccceeeccCCcc-eeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhhccccceeee---ecCCceEEEecCCceEEE
Confidence 6654444443222 22445555666666544 3444444 3333322222222233333 445778999999999999
Q ss_pred EeCCCCcEEEEEecCCccc-cccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 713 FEQESGNLLWEYSVGDPIT-ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+|.+++.....+..+..-. ....+.+ ....++..++.||.|.+||.+..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~----------~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTN----------PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEec----------CCceEEEEeccCceEEEEEcccc
Confidence 9988888776665444322 2221221 11468888999999999998743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-08 Score=107.62 Aligned_cols=208 Identities=13% Similarity=0.021 Sum_probs=134.3
Q ss_pred CCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCc-------EEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEE
Q 003331 515 EGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGD-------IYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 515 ~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~-------~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~ 585 (829)
+...+....+++ ++..+++++.|+.|..||..++. .+..+..+........+.+. .+.+++++.|+.|..|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 334445666776 66789999999999999987653 23344444433344455554 3678889999999999
Q ss_pred EcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc-eeeeeeeecCCEEEEEe-
Q 003331 586 DFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVICCL- 663 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~~~- 663 (829)
|..+++.+..+..+...+.+..+..++..++.++.|+.|..||+.+ ++.+.....+... ........+++.++.+.
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRD--GTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCC--CcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 9999988877765555555666676678889999999999999987 7776665443322 12223334455555433
Q ss_pred ---eCCeEEEEc-CCCC-EEEEeecCC-ceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEe
Q 003331 664 ---VDGHVVALD-SSGS-IIWRCRTGG-PIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 664 ---~~g~i~~~d-~~g~-~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~ 725 (829)
.++.|..|| .+.. ......... .....+.. ....+.+++++ .||.|++||..++++.....
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~-d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFF-DEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEE-cCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 367899999 5543 322222111 11111111 11234677776 49999999999998765443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.7e-09 Score=107.78 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=165.1
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC-CEE
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR-QLI 573 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~-~~i 573 (829)
+-++..|+..+-..+-.+.--....+++.+-.||..+.+|...|.+..||.++-.++..+..+....-..-+.+.+ ..+
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEE
Confidence 3468888887765543322223345678888888888899889999999966644444444333322222333334 445
Q ss_pred EEeccCCeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeee
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
..|++|+.+..||+.++........+.. +.+..+.+.++..++.|+.||.|..||....+ ..+-.++.+.|+ .+...
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pV-e~vl~ 204 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPV-ESVLA 204 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCce-eeEEE
Confidence 5677778888899988876434433333 33333334445678889999999999988743 445555555444 45555
Q ss_pred eecCCEEEEEeeCCeEEEEc-CCCC-EEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003331 653 TSANRHVICCLVDGHVVALD-SSGS-IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 653 ~~~~~~l~~~~~~g~i~~~d-~~g~-~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
.+.+..+..++ ...+.+|| .+|. .+...........+.+... .+..++.++-|+++.+||..+-+++.....++++
T Consensus 205 lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pv 282 (487)
T KOG0310|consen 205 LPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPV 282 (487)
T ss_pred cCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeeecccce
Confidence 55555555554 56799999 6454 3332221112222222222 2467999999999999998888888888888887
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
-+....++ +..+++|-.||.+.+-+..
T Consensus 283 Lsiavs~d------------d~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPD------------DQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCC------------CceEEEecccceeeeehhh
Confidence 66554443 7899999999987766433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.4e-08 Score=101.60 Aligned_cols=313 Identities=13% Similarity=0.122 Sum_probs=176.4
Q ss_pred eEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 487 IYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 487 ~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
+.+++ -..+|.|..+|..|.+++.+++.+........++.|+.++|+.+.||.|..+|+.+++++.++..+..... ..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~-i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRG-IA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEE-EE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcce-EE
Confidence 33443 44578999999999999999887766555677888999999999999999999999999999988776554 34
Q ss_pred eecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCccc-------ccceeecCCCEEEEE-ecCCeEEEEEccCCCceE
Q 003331 566 VDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIF-------GSPAIDEVHDVLYVA-STSGRLTAISVKALPFHT 636 (829)
Q Consensus 566 ~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~-------~~~~~~~~~~~l~v~-t~~g~l~~~~~~~~~g~~ 636 (829)
++.++.+++++.+ .+.+..+|.+|.+++..+...+... +...........++. -..+.+..+|..+ .+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d--~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD--PKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT--SSC
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc--ccc
Confidence 5567788888764 6889999999999988776543211 112222222222222 2346677777554 222
Q ss_pred EE--eeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCceeecCc--ccccCCCeEEEEeeCCe-
Q 003331 637 LW--LHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPIFAGPC--TSFALPSQVLICSRNGS- 709 (829)
Q Consensus 637 ~w--~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~--~~~~~~~~i~~~t~~g~- 709 (829)
+. ..+.. .......+.+++.+++++. ....+.++| .++++++....+......+. ...-..|.+|..++.+.
T Consensus 163 ~~~~~i~~g-~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 163 LKVTTIKVG-RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred cceeeeccc-ccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 22 22221 1223445566666776654 456888999 88888887765443322221 11222345665554332
Q ss_pred ---------EEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE----ccCCcEEEEEeecCccccc
Q 003331 710 ---------IYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC----TSSGSIHILRVNLDVTGKE 776 (829)
Q Consensus 710 ---------l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~G~l~~~d~~~~~~~~~ 776 (829)
+..+|..+-+.+-+.+..+.-.... ..+++.++|+. ...+.|.++|.++-
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~------------thP~s~~vwvd~~~~~~~~~v~viD~~tl----- 304 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK------------THPDSRYVWVDTFLNPDADTVQVIDKKTL----- 304 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--------------TT-SEEEEE-TT-SSHT-EEEEECCGT-----
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceee------------cCCCCccEEeeccCCCCCceEEEEECcCc-----
Confidence 2223434445555555433221111 12347899998 44578999998854
Q ss_pred cccccccceeeeeecc-CCcccccceE--ECCEEEEeeeCC--eEEEEecccccccc
Q 003331 777 NQSKDHMVQEFAKLEL-QGDIFSSPVM--IGGRVFVGCRDD--YIYCIALETQHLEE 828 (829)
Q Consensus 777 ~~~~~~~~~~~~~~~~-~~~~~~s~~~--~~~~l~vg~~~g--~l~~~d~~tg~~~~ 828 (829)
+....... ++.....+-+ ++..+|+..+++ .|..||.+|.++..
T Consensus 305 --------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 305 --------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred --------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 22222211 1101112222 467999998765 59999999987643
|
... |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-08 Score=95.89 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=156.0
Q ss_pred CceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 516 GRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 516 ~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
...+...-+.++|..+..|++|..|+.|+. .+.+-.|..+.+.....-.-+..++..|+..+.|.+++.||.++|+...
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r 126 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIR 126 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeee
Confidence 344456778888889999999999999993 3445567776655444444455577889999999999999999999999
Q ss_pred eeccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 595 KLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
++..+....++....+-+ ..|-.++.|+++..||..+ ...+..++...+ ..+..+......+..|.-|+.|.+||
T Consensus 127 k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~--k~~~~t~~~kyq-ltAv~f~d~s~qv~sggIdn~ikvWd~ 203 (338)
T KOG0265|consen 127 KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK--KEAIKTFENKYQ-LTAVGFKDTSDQVISGGIDNDIKVWDL 203 (338)
T ss_pred hhccccceeeecCccccCCeEEEecCCCceEEEEeecc--cchhhcccccee-EEEEEecccccceeeccccCceeeecc
Confidence 998877665554433212 2344567899999999886 333333322212 24556666778899999999999999
Q ss_pred CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEecCCcccccccccccccccccccc
Q 003331 673 SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSVGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 673 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
..+...+..+..........+.. .+..+..-+-|.++..||.+--.. +-.+....-.. ...+---+..
T Consensus 204 r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf-------eknlL~csws 275 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF-------EKNLLKCSWS 275 (338)
T ss_pred ccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhh-------hhhcceeecc
Confidence 77777766654332222211111 123455556788899998653211 11111100000 0001112234
Q ss_pred CCCcEEEEEccCCcEEEEEeec
Q 003331 749 SIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+.+..+-+|+.|..+|+||..+
T Consensus 276 p~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 276 PNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred CCCCccccccccceEEEeeccc
Confidence 5578889999999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-08 Score=96.22 Aligned_cols=241 Identities=10% Similarity=0.073 Sum_probs=147.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.++.-+++..+.+.++++||.|..||...-..+-.+.....+.... +. +...+++|+.||.|..+|..+++....-..
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~-F~-d~~~~~~G~~dg~vr~~Dln~~~~~~igth 93 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCA-FA-DESTIVTGGLDGQVRRYDLNTGNEDQIGTH 93 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeee-cc-CCceEEEeccCceEEEEEecCCcceeeccC
Confidence 4566677777889999999999999988777777777766666553 33 247899999999999999998875543332
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
......+......+.++.|++|+.|-.||+.. -...-.++.... ..++...++++++|+.+..+..|| .+-..
T Consensus 94 -~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~--~~~~~~~d~~kk---Vy~~~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 94 -DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN--KVVVGTFDQGKK---VYCMDVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred -CCceEEEEeeccCCeEEEcccCccEEEEeccc--cccccccccCce---EEEEeccCCEEEEeecCceEEEEEcccccc
Confidence 22333333444468899999999999999874 112222222222 234555688999999999999999 65544
Q ss_pred EEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCC----cEEEEEecCCccccccccccccccccc--cccCC
Q 003331 678 IWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG----NLLWEYSVGDPITASAYIDEHLQLKLE--SCLSI 750 (829)
Q Consensus 678 ~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG----~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 750 (829)
-.+.....--+-..++... ..+...+++-+|.+..=..++- +..+.++.+-.... +..+.+... ...+.
T Consensus 168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~----~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEK----DTEIIYPVNAIAFHPI 243 (323)
T ss_pred hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccC----CceEEEEeceeEeccc
Confidence 3332222211111122111 2334566777887765444443 22333332211100 000000001 11222
Q ss_pred CcEEEEEccCCcEEEEEeecC
Q 003331 751 DRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~ 771 (829)
-+.++.|..||-|.+||..+.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cceEEecCCCceEEEccCcch
Confidence 578999999999999998865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-08 Score=107.97 Aligned_cols=224 Identities=8% Similarity=-0.004 Sum_probs=141.8
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcE--------EEEEecCCeeeee
Q 003331 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDI--------YWTFQTCGEVKCQ 563 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~--------~w~~~~~~~~~~~ 563 (829)
+..+.+..|+..+...+..+..+...+.+..+.++ +..+++|+.|+.|..||..++.. +..+..+......
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 34556777776666666666666555556777765 57899999999999999876532 2223333333344
Q ss_pred eeeecCCCEE-EEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 564 PVVDAPRQLI-WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 564 ~~~~~~~~~i-~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+.+.+..+ .+++.|+.|..||..+++.+..+... ....+..++.++..+.+++.++.+..||+.+ ++.+..+..
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rs--g~~i~tl~g 207 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK--QEIASSFHI 207 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCC--CcEEEEEec
Confidence 4555555444 57889999999999999888776543 3344556666667777777899999999998 777665544
Q ss_pred CCcceeeee-----eeecCCEEEEEeeCC----eEEEEc-C-CCCEEEEeecCCceee-cCcccccCCCeEE-EEeeCCe
Q 003331 643 EVPAFASLC-----ITSANRHVICCLVDG----HVVALD-S-SGSIIWRCRTGGPIFA-GPCTSFALPSQVL-ICSRNGS 709 (829)
Q Consensus 643 ~~~~~~s~~-----~~~~~~~l~~~~~~g----~i~~~d-~-~g~~~w~~~~~~~~~~-~~~~~~~~~~~i~-~~t~~g~ 709 (829)
+.....+.. +..+++.++.++.++ .|..|| . .++.+........... .|.. ...++.+| +|..|+.
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~-D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY-DESTGLIYLIGKGDGN 286 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee-eCCCCCEEEEEECCCe
Confidence 332211211 224566777766553 699999 5 3555544333221111 1111 11234444 6678999
Q ss_pred EEEEeCCCCcE
Q 003331 710 IYSFEQESGNL 720 (829)
Q Consensus 710 l~~~d~~tG~~ 720 (829)
|++|+..++.+
T Consensus 287 Ir~~e~~~~~~ 297 (568)
T PTZ00420 287 CRYYQHSLGSI 297 (568)
T ss_pred EEEEEccCCcE
Confidence 99999988764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.1e-09 Score=109.52 Aligned_cols=263 Identities=15% Similarity=0.191 Sum_probs=171.9
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEE--EecCCe-eeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQTCGE-VKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~--~~~~~~-~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
..++..+..++.|+++..|+.+.++-+-+ +..+.. +..+.++. .+++.+.+|+.|..+..|...+..++..+..+.
T Consensus 22 ~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~ 101 (745)
T KOG0301|consen 22 VTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHK 101 (745)
T ss_pred ecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccc
Confidence 34445678888899999999655443322 222222 22323333 356789999999999999999989888877666
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWR 680 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~ 680 (829)
...++..+.. +++++.|++|.++.+|.... .....+.+.....+....+ .+.+..|+.|..|..|.. |+.+-.
T Consensus 102 snVC~ls~~~-~~~~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~-e~~~vTgsaDKtIklWk~-~~~l~t 174 (745)
T KOG0301|consen 102 SNVCSLSIGE-DGTLISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLP-ENTYVTGSADKTIKLWKG-GTLLKT 174 (745)
T ss_pred cceeeeecCC-cCceEecccccceEEecchh----hhcccCCcchheeeeeecC-CCcEEeccCcceeeeccC-Cchhhh
Confidence 6555554433 56689999999888886442 2222222322223333333 447888888988888863 444444
Q ss_pred eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 681 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
+.......... ....+..+..+++||.|..|+. +|..+.++..+.....+... ..+++.+..++.|
T Consensus 175 f~gHtD~VRgL--~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~-----------~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 175 FSGHTDCVRGL--AVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM-----------ALSDGLIVSTGED 240 (745)
T ss_pred hccchhheeee--EEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe-----------cCCCCeEEEecCC
Confidence 43322222221 1333557888899999999997 67777666554443322221 1237889999999
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCC-cccccceEECCEEEEeeeCCeEEEEeccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG-DIFSSPVMIGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l~vg~~~g~l~~~d~~t 823 (829)
+++.+|+.. .......+|+ .+++.-+..+|.|++||.||.+|.|....
T Consensus 241 rtlriW~~~---------------e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 241 RTLRIWKKD---------------ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ceEEEeecC---------------ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 999999765 3445567777 56666667799999999999999997653
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-08 Score=91.10 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=155.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++.||..+.|.....|-..+|+.+-++..+.+.+.++.+..+...++.|+.|.++..||.++|+++.+.+++..++..-
T Consensus 21 eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~ 100 (327)
T KOG0643|consen 21 EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVD 100 (327)
T ss_pred CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEe
Confidence 56678888888888888877899988888888777777887777899999999999999999999998888887776543
Q ss_pred eeecCCCEEEEecc-----CCeEEEEEcC-------CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 565 VVDAPRQLIWCGSH-----DHNLYALDFR-------NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 565 ~~~~~~~~i~~gs~-----~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
++.+++.+.+.+. .+.|..+|.. ..++..++.+......+......+..|+.|..+|.|..||+.+
T Consensus 101 -F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~- 178 (327)
T KOG0643|consen 101 -FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART- 178 (327)
T ss_pred -eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc-
Confidence 4445555555543 3567888876 4455677766665555666666678999999999999999998
Q ss_pred CceEEEee-ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC
Q 003331 633 PFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 633 ~g~~~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
|..+-.. +.+...+....++.+..+...++.|..-..+| .+-+++-++.+..|+-+..
T Consensus 179 -g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 179 -GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred -CceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 7554332 33444456677777888888899999999999 8888888888777765443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-07 Score=93.33 Aligned_cols=267 Identities=11% Similarity=0.065 Sum_probs=164.7
Q ss_pred CeEEEEecCC-----CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcE
Q 003331 486 DIYLFVGSHS-----HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDI 550 (829)
Q Consensus 486 ~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~ 550 (829)
..++|+-... ++++.+|..+++.+-.+..+.+.. ..+++|++.+|+++. +..|-.||.+|+++
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~--~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN--PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc--eeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 4456665543 789999999999998888776543 358899999999876 57899999999999
Q ss_pred EEEEecCCee-------eeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC
Q 003331 551 YWTFQTCGEV-------KCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 551 ~w~~~~~~~~-------~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
+.+...+... .....+++++..+|+... +..+..+|..+++.+-.+..++.....+. . +...++-..|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t-~--e~~~~~~~~D 166 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT-A--NDTFFMHCRD 166 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-c--CCccEEEeec
Confidence 9988765431 123445667888998753 57899999999999988876543222111 1 1222233345
Q ss_pred CeEEEEEccCCCceEEEe-ecc----CCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCC-c---
Q 003331 622 GRLTAISVKALPFHTLWL-HEL----EVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSI----IWRCRTGG-P--- 686 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~-~~~----~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~-~--- 686 (829)
|....+..++ +|+..-. ... ..+.+..+.+.. ++..+|+... |.|+.+| ..... .|...... .
T Consensus 167 g~~~~v~~d~-~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 167 GSLAKVGYGT-KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred CceEEEEecC-CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence 5554443332 1332211 111 122333343445 5556666554 9999999 33222 24321111 0
Q ss_pred ---eeecCcccccCCCeEEEEeeC----------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003331 687 ---IFAGPCTSFALPSQVLICSRN----------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 687 ---~~~~~~~~~~~~~~i~~~t~~----------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
.-..+.-....++.+|+..+. +.|..+|.++++.+-+...+.......+.. ++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~------------Dgkp 312 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQ------------DAKP 312 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECC------------CCCe
Confidence 000011112235789985432 479999999999998888766544333222 256
Q ss_pred EEEEEc-cCCcEEEEEeecC
Q 003331 753 LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~~~ 771 (829)
++|+.+ .++.|.++|..++
T Consensus 313 ~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 313 LLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEeCCCCCcEEEEECcCC
Confidence 778777 4677999998866
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.9e-08 Score=95.08 Aligned_cols=265 Identities=12% Similarity=0.072 Sum_probs=165.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEE-eeC--CcEEEEEEeCCEEEEEEcCCCcEEEE----EecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAV-LAD--FSQVVVGCYKGKIYFLDYLTGDIYWT----FQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~-~~~--~~~v~vg~~dg~l~~~d~~tG~~~w~----~~~~ 557 (829)
..+.|+.|+.||.+..||.+ |+.+-....+.....++.. ..+ ...+++++.|..|..|-.+.|+.+-. ...+
T Consensus 114 ~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 114 ASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred cCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 35789999999999999975 8888776665543333332 222 23588889999888877666654321 1123
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----Ce--------------------EEEeeccCCcccccceeecCC
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YR--------------------CVYKLPCGGSIFGSPAIDEVH 612 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~--------------------~~w~~~~~~~~~~~~~~~~~~ 612 (829)
.....+..+..++.++..|++|..|-.|+.++ .+ ++-....+....++....+ .
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C
Confidence 33334444455677888899999999999221 00 0111111122334444444 6
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C--CCCEEE-EeecCCcee
Q 003331 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S--SGSIIW-RCRTGGPIF 688 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~--~g~~~w-~~~~~~~~~ 688 (829)
..+|.+++|.+|..||+.+ |..+-....+.. +.+....+....+.+|+.+..+..+| + +|+..- ++....+ +
T Consensus 272 ~v~yS~SwDHTIk~WDlet--g~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n-w 347 (423)
T KOG0313|consen 272 TVIYSVSWDHTIKVWDLET--GGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN-W 347 (423)
T ss_pred CceEeecccceEEEEEeec--ccceeeeecCcc-eeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh-h
Confidence 8899999999999999998 776666554433 45666666778899999999999999 4 344432 2222222 1
Q ss_pred ecCcc-cccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 689 AGPCT-SFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 689 ~~~~~-~~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.+.+. .......+..+++||.+..||.++-+ .++.+..++.-....--. .+..|..|+.|.+|+++
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~------------~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN------------EGGLIVSGGADNKLRIF 415 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc------------CCceEEeccCcceEEEe
Confidence 11111 11223457778999999999988776 666554433221111111 15578888888888877
Q ss_pred E
Q 003331 767 R 767 (829)
Q Consensus 767 d 767 (829)
.
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-09 Score=103.59 Aligned_cols=275 Identities=12% Similarity=0.060 Sum_probs=158.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-EEEEEEcCCCcEEE-EEecCCeeeeeeeeecCCCEE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYLTGDIYW-TFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-~l~~~d~~tG~~~w-~~~~~~~~~~~~~~~~~~~~i 573 (829)
..+.+||+.||...|+++.........+-.-.+.++.++.... .|..|........- .+..++.+.+- ...+.+..+
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al-~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL-ASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeee-ecCCCceEE
Confidence 4588999999999999876532211111111224555554332 35555533222221 22234444332 223344455
Q ss_pred EEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC-------CceEEEeeccCCcc
Q 003331 574 WCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL-------PFHTLWLHELEVPA 646 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~-------~g~~~w~~~~~~~~ 646 (829)
+.|+..|.||+|...+|+++..+..+-..+....+.+++..++.|+.||.|.+|.+.+. +-+++..+..+.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 55658999999999999998777666556666777887889999999999999974320 01112222111111
Q ss_pred eeeeeeee--cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 647 FASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 647 ~~s~~~~~--~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
.....+.. .+.++|..+.|..+.+|| ..|.++-.+..+..+.+... .-.+..+|+|+.+|.|+..+..+-.....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l--Dpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL--DPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE--cccccEEEecCCcceEEeeehhcCCcccc
Confidence 11222211 256899999999999999 89998877766554433321 11355799999999999887643221000
Q ss_pred ----E-ecCCccccccccccc--cccccccccCCCcEEEEEccCCcEEEEEeecCcc
Q 003331 724 ----Y-SVGDPITASAYIDEH--LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 773 (829)
Q Consensus 724 ----~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~ 773 (829)
. ....+.....+.... ..+.+-+...++..+..|+.||.+.+||..+.+.
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 0 000000000000000 0111111234588999999999999999987653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.9e-09 Score=104.09 Aligned_cols=227 Identities=16% Similarity=0.166 Sum_probs=150.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~ 562 (829)
++..+.+|...|.|..||.++...+..+..+....-..-+.+.++. +..|+.|+.+..||+.++.+.-....+ +.+.+
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 3556667778899999997664444444433332223334444455 455666667778888888764344443 34555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
..+....+..+++|++||.|..||..+- ..+..++++.++-+...+.. +.+++......+.+||+.+ .|+.+-...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps--gs~iasAgGn~vkVWDl~~-G~qll~~~~ 235 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS--GSLIASAGGNSVKVWDLTT-GGQLLTSMF 235 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC--CCEEEEcCCCeEEEEEecC-Cceehhhhh
Confidence 5555445568899999999999998876 55555665555444444433 4455555566799999886 144444444
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.....+..+..++.+++.++-|+.+.+|| .+-+.+......+++.+..... .+..+++|-.+|.+..-...
T Consensus 236 ~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~--dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 236 NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP--DDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC--CCceEEEecccceeeeehhh
Confidence 3455556777777788999999999999999 7878887777778887765433 45689999999977766433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.6e-08 Score=106.84 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=133.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCc-------EEEEEEcCCceeeceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSS-------VLWEIKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~-------~~w~~~~~~~~~~~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
++..|+.|+.|+.|..||..++. .+..+..+........+.+++ +.+++++.|+.|..||..+++.+..+..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 35689999999999999987653 233444444444566677654 5788999999999999999998877765
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-cccceeecCCCEEEEEe----cCCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-FGSPAIDEVHDVLYVAS----TSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t----~~g~l~~~~~~~ 631 (829)
+........+.+++..+++++.|+.|+.||+.+++.+..+..+... ........+.+.++.+. .++.+..||+.+
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 5544455566667788999999999999999999988776554322 22233344445555433 368899999875
Q ss_pred CCceEEEeeccCC-cceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEe
Q 003331 632 LPFHTLWLHELEV-PAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRC 681 (829)
Q Consensus 632 ~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~ 681 (829)
. ...+....... .....+.+..+++.+++++. ++.|.+|| .++++....
T Consensus 247 ~-~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 247 M-ASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred C-CCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 1 12222222221 12223345556778888874 89999999 888876544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-09 Score=105.24 Aligned_cols=265 Identities=10% Similarity=0.114 Sum_probs=178.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC---cEEEEEEc--CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRS---SVLWEIKL--EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg---~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
+.....||.|...+ |..||...- .++-.++. .+...-++-+..|+..+++|.+-.+|-.||+..-...-..++.
T Consensus 428 S~~trhVyTgGkgc-VKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 428 SNPTRHVYTGGKGC-VKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred cCCcceeEecCCCe-EEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC
Confidence 34567899988755 999997432 11112221 2334446667788899999999889999998765543333322
Q ss_pred C--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 558 G--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 558 ~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
. ..-....+..+.+..+....||+|..||+.+...+..++.+..-.+.+.+..++-.||.|..|+.|.+||+.+ |.
T Consensus 507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre--gr 584 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE--GR 584 (705)
T ss_pred CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh--hh
Confidence 2 1112233455778888888999999999999988888877665566677777788999999999999999998 88
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEE-eeCCeEEEE
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLIC-SRNGSIYSF 713 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~-t~~g~l~~~ 713 (829)
.+.+++....+| +...++.++.+.+|..++.+.++..+|...++..... -+++..+ ..-|.-|+. ..|+.+.+|
T Consensus 585 qlqqhdF~SQIf-SLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKF---a~cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 585 QLQQHDFSSQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKF---AYCGKWFVSTGKDNLLNAW 660 (705)
T ss_pred hhhhhhhhhhhe-ecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEe---cccCceeeecCchhhhhhc
Confidence 777776666554 4556678889999999999999886666666654432 3444332 223444544 356778888
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
..--|.-+++.+-.+.+.+.-... ++.+|+.|+-+..--+|
T Consensus 661 rtPyGasiFqskE~SsVlsCDIS~------------ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 661 RTPYGASIFQSKESSSVLSCDISF------------DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCccccceeeccccCcceeeeecc------------CceEEEecCCCcceEEE
Confidence 776777776655544443332222 26677777766543333
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-08 Score=104.05 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=66.9
Q ss_pred CCCcEEEEEEcCCc----------eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee------eeee-
Q 003331 504 KRSSVLWEIKLEGR----------IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC------QPVV- 566 (829)
Q Consensus 504 ~tg~~~w~~~~~~~----------~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~------~~~~- 566 (829)
..-++.|+++.++- .+.++... ++.+|+.+.-+.++++|+.||+++|+++....... +-.+
T Consensus 182 ~nL~~AWty~TGD~k~~~d~~e~t~e~tPLkv--gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVs 259 (773)
T COG4993 182 GNLQVAWTYRTGDVKQPEDPGETTNEVTPLKV--GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVS 259 (773)
T ss_pred hccceeEEEecCcccCCCCcccccccccceEE--CCEEEEecCcceeEEeeccCCceeeecCCCCCCCccccccccccee
Confidence 34567788765431 23345554 45899999999999999999999999875321100 0000
Q ss_pred ---------ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 567 ---------DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 567 ---------~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
.+...+||..+.|..|.++|.+||+..|.+..++
T Consensus 260 y~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~G 302 (773)
T COG4993 260 YGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKG 302 (773)
T ss_pred cccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCc
Confidence 1123569999999999999999999999987654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-08 Score=103.36 Aligned_cols=236 Identities=9% Similarity=0.072 Sum_probs=165.0
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
+-+.+-.--+.++-++|.+..||-+|-..+..++..+...-+..+....+-+.+|++|..|+.|+..|++.+..+..+..
T Consensus 19 Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D 98 (794)
T KOG0276|consen 19 VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD 98 (794)
T ss_pred eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecccc
Confidence 33444444567777899999999999999888887665444445555678899999999999999999999999999988
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
.+.++.+.+..-.++.++.|-.|-.||-+.. -.....++.+.......++.+.+ +....++-|++|.+|. -.....+
T Consensus 99 yIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf 177 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF 177 (794)
T ss_pred ceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce
Confidence 8888888887778888998988999987741 12222334444444556666654 4556677788888887 4444555
Q ss_pred EeecCCceeecCcccccCC---CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE
Q 003331 680 RCRTGGPIFAGPCTSFALP---SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~---~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
+++... -...|+..... -.++.|+.|..+..||-+|...+-++..+....+..++.. .-..++.
T Consensus 178 Tl~gHe--kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-----------~lpiiis 244 (794)
T KOG0276|consen 178 TLEGHE--KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-----------ELPIIIS 244 (794)
T ss_pred eeeccc--cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-----------CCcEEEE
Confidence 554322 22223322222 2688889999999999988877666654443333333322 2568899
Q ss_pred EccCCcEEEEEeecC
Q 003331 757 CTSSGSIHILRVNLD 771 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~ 771 (829)
|+.||++.+|+..+-
T Consensus 245 gsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTY 259 (794)
T ss_pred ecCCccEEEecCcce
Confidence 999999999987653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=105.86 Aligned_cols=271 Identities=11% Similarity=0.002 Sum_probs=181.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++.+|.+||..|.+..||..+-.+.--...++..+.+...+.++..++.|..+|.|..|++.-..++-....+.+....
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRd 185 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRD 185 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhhe
Confidence 45788999999999999986432211112345666677888889899999999999999986544333222223232333
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+++.+..+..+|.||.|..||....+....+..++...-+....+..+.|+.++.|..|-.||+++ |..+-+....
T Consensus 186 lafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS--g~cl~tlh~H 263 (464)
T KOG0284|consen 186 LAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS--GSCLATLHGH 263 (464)
T ss_pred eccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--cchhhhhhhc
Confidence 44555667788889999999999887776666666666556666666678899999999889999988 8888777666
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
........+..+++.+..++.|..+.+|| ++-+.+..+.....-...........+.+-.|+.||.|+.|....-+++-
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 66666777777889999999999999999 76666655553322111111111224456677889989888865322221
Q ss_pred EEe--cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 723 EYS--VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 723 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
... ....+.+.. ..+.+..++.|+.|..+..|..
T Consensus 344 ~i~~AHd~~iwsl~------------~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLA------------YHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CCCcccccceeeee------------ccccceeEeecCCCcceeeecc
Confidence 111 111111111 1233788888999998888854
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-09 Score=108.81 Aligned_cols=268 Identities=14% Similarity=0.159 Sum_probs=167.4
Q ss_pred CeEEEEecCCCcEEEEECCCCcE------EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecC
Q 003331 486 DIYLFVGSHSHKFICADAKRSSV------LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTC 557 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~------~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~ 557 (829)
+.++|.|+.||.|..|+...-.- +-++..+.......+...+++.++..+.|-+|..|+...+. ++-++..+
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 44699999999999998643221 11122222223344555666788899999999999987764 22233334
Q ss_pred Ce-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeecc------C-Cccc--ccceeecCCCEEEEEecCCeEE
Q 003331 558 GE-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPC------G-GSIF--GSPAIDEVHDVLYVASTSGRLT 625 (829)
Q Consensus 558 ~~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~------~-~~~~--~~~~~~~~~~~l~v~t~~g~l~ 625 (829)
.. +.+..........+..|+.|+.|+.||..+|. .+-++.. . +... .+......+-.++.|+.++.|.
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 33 34433325556677788999999999999883 3333321 1 1111 1112222122445566788899
Q ss_pred EEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEE
Q 003331 626 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLI 703 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~ 703 (829)
.||+.+ ++.+-+...+....-...+..++.++..++.||.|..|| ...+.+.++..... +++..+. ..=..+|.
T Consensus 197 ~wDprt--~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~--~sf~~vYs 272 (735)
T KOG0308|consen 197 LWDPRT--CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS--PSFTHVYS 272 (735)
T ss_pred Eecccc--ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeC--CCcceEEe
Confidence 999998 777777666655555666777888999999999999999 66666666654432 3332211 11247999
Q ss_pred EeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 704 CSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
|..+|.|++-|..+-. ..--.+-..++...... .+++-+|+++.|+.|..|...
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~------------~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH------------EHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred cCCCCcEEecccCCchhheEeecCCCchhhhhhc------------cccCCceeeeccccceecCCc
Confidence 9999999999988742 22122222222211111 124556999999999998554
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-08 Score=91.53 Aligned_cols=250 Identities=10% Similarity=0.038 Sum_probs=160.5
Q ss_pred cccccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc--EEEEEEe
Q 003331 459 RGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS--QVVVGCY 536 (829)
Q Consensus 459 ~~~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~--~v~vg~~ 536 (829)
.+.+...|.++-......+.+| ++-++..|+.|.+|..||..+.+.+-..-.+.....+..+..+-. .+..|+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAV----s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAV----SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ceeeeccccccccccceeEEEe----cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 4567778888866554445555 678899999999999999988776655555554444445544432 7999999
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~ 616 (829)
||.|..|+...=+++.++..+..-.....+.+.+...+.-+.|+.+..||.-+|+.-.......... ...+++.+++.+
T Consensus 106 DG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFV 184 (362)
T ss_pred CCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEE
Confidence 9999999987766655555443333344455666666666779999999999998766655543222 234455567777
Q ss_pred EEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccc
Q 003331 617 VASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSF 695 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~ 695 (829)
+...++ |-+|..++ .+..-....+ .........+++.+++|..++.+..+| .++.....+....+-........
T Consensus 185 v~~~~~-i~i~q~d~--A~v~~~i~~~--~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 185 VSGRNK-IDIYQLDN--ASVFREIENP--KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred EEeccE-EEEEeccc--HhHhhhhhcc--ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEe
Confidence 777654 77776665 2222222221 112233344688999999999999999 66777665544332111111111
Q ss_pred cCC-CeEEEEeeCCeEEEEeCCCC
Q 003331 696 ALP-SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 696 ~~~-~~i~~~t~~g~l~~~d~~tG 718 (829)
..+ ..|...+.||.|..||.+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 112 24556678999999998765
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-07 Score=101.16 Aligned_cols=222 Identities=9% Similarity=0.029 Sum_probs=138.1
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeE--------EEeeccCCcccccce
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRC--------VYKLPCGGSIFGSPA 607 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~--------~w~~~~~~~~~~~~~ 607 (829)
++.+..|+......+..+..+........+.+. +..|++|+.|+.|..||..++.. +..+..+........
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 455677776555566666555444444455554 57889999999999999876532 222333333444555
Q ss_pred eecCCCEE-EEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 608 IDEVHDVL-YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 608 ~~~~~~~l-~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
+.+++..+ ..++.|+.|..||+.+ ++........ ....+..+..++..+.+++.++.+.+|| .+++.+.++....
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~t--g~~~~~i~~~-~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIEN--EKRAFQINMP-KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCC--CcEEEEEecC-CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 66545555 4677899999999988 7766665433 2345666777788888788899999999 8888876654332
Q ss_pred ceeecCccc---c-cCCCeEEEEeeCC----eEEEEeCCC-CcEEEEEecCCcccc-ccccccccccccccccCCCcEEE
Q 003331 686 PIFAGPCTS---F-ALPSQVLICSRNG----SIYSFEQES-GNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 686 ~~~~~~~~~---~-~~~~~i~~~t~~g----~l~~~d~~t-G~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
......++. . ..++.+..++.++ .|..||.++ ++.+-....+..... .++.+. ..+.++.
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~----------~tg~l~l 279 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE----------STGLIYL 279 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC----------CCCCEEE
Confidence 211111110 1 1234566655553 699999884 555544444332211 223222 1255667
Q ss_pred EEccCCcEEEEEeecC
Q 003331 756 ICTSSGSIHILRVNLD 771 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~ 771 (829)
+|..|+.|++|+...+
T Consensus 280 sGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 280 IGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEECCCeEEEEEccCC
Confidence 7889999999998755
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-07 Score=99.60 Aligned_cols=278 Identities=14% Similarity=0.160 Sum_probs=166.2
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCc
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGD 549 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~ 549 (829)
-.++..+|++ +.|.+|..+|.|..+|.+.++.+.+|+.+.+-+.+..+..||. .+.+|+..|.+..||++..+
T Consensus 205 IT~ieqsPaL------DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk 278 (910)
T KOG1539|consen 205 ITAIEQSPAL------DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK 278 (910)
T ss_pred eeEeccCCcc------eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe
Confidence 3456667877 6899999999999999999999999988733345677776666 45667777999999999888
Q ss_pred EEEEEe-cC-CeeeeeeeeecCCCE-----------EEE------------------------------------eccCC
Q 003331 550 IYWTFQ-TC-GEVKCQPVVDAPRQL-----------IWC------------------------------------GSHDH 580 (829)
Q Consensus 550 ~~w~~~-~~-~~~~~~~~~~~~~~~-----------i~~------------------------------------gs~~g 580 (829)
..|... .+ +.+. ...+....-. +|+ .+.|.
T Consensus 279 l~~v~~nah~~sv~-~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Dr 357 (910)
T KOG1539|consen 279 LINVTRNAHYGSVT-GATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDR 357 (910)
T ss_pred eeeeeeccccCCcc-cceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCc
Confidence 888654 22 1110 0011111111 111 11111
Q ss_pred eEEEEEcC-------CCe-------------------------------------------------EEEeeccC--C--
Q 003331 581 NLYALDFR-------NYR-------------------------------------------------CVYKLPCG--G-- 600 (829)
Q Consensus 581 ~l~~~d~~-------tg~-------------------------------------------------~~w~~~~~--~-- 600 (829)
.++.++.. -|+ ..|.+... |
T Consensus 358 t~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~ 437 (910)
T KOG1539|consen 358 TLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRH 437 (910)
T ss_pred chhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccE
Confidence 11111110 000 01111100 0
Q ss_pred -----------cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeecCCEEEEEeeCC
Q 003331 601 -----------SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 601 -----------~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
....+.+++.=++..++|+..|.|-.||.+. |-..-++. .........++..-+..+..++.+|
T Consensus 438 ~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 438 VLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS--GIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred EecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc--CeeecccccCccccCceeEEEecCCCceEEEccCcc
Confidence 0011222333356688899999999999987 76666552 2222223444444455677788889
Q ss_pred eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec-CCcccccccccccccccc
Q 003331 667 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKL 744 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~ 744 (829)
.+..|| .++.++-....+..+... +.....+.+.++..+=.|..+|..|-+++.++.. ++.+....+.
T Consensus 516 ilkfw~f~~k~l~~~l~l~~~~~~i--v~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-------- 585 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLGSSITGI--VYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-------- 585 (910)
T ss_pred eEEEEecCCcceeeeeccCCCccee--eeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC--------
Confidence 899999 666655555444322111 1111234455666777899999999888777663 3334333333
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++..+.+++.|+.|..||.-++
T Consensus 586 ----~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 586 ----PDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred ----CCCcEEEEeecCCcEEEEeccCc
Confidence 23899999999999999999877
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.3e-09 Score=106.99 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=154.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
++..|++|.....|..||+.+-...-+..+.. .......++.|.+..|..+.||.|..||+.+..++..++.+..-.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 56788999988889999987765543333332 2222445678888999999999999999999998888877655555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+..+..++..||+|+.|..|++||..+|+.+...+....+++-- ..+.++.|.+|-.++.+.++... +...+....
T Consensus 556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg-~cP~~dWlavGMens~vevlh~s---kp~kyqlhl 631 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG-YCPTGDWLAVGMENSNVEVLHTS---KPEKYQLHL 631 (705)
T ss_pred eEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc-cCCCccceeeecccCcEEEEecC---Cccceeecc
Confidence 55666678899999999999999999998877766555554432 23446889999999999888755 555555555
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
......+..+...+...+....|.-+.+|. .-|..+++.+....+.+..+.. .|..|..|+.+..-
T Consensus 632 heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~--ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 632 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISF--DDKYIVTGSGDKKA 698 (705)
T ss_pred cccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeecc--CceEEEecCCCcce
Confidence 555555666655555444444567777887 7787777776666665554222 24456666655433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.5e-08 Score=97.68 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=130.0
Q ss_pred CCeEEEEecCCCc--EEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCC---
Q 003331 485 SDIYLFVGSHSHK--FICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCG--- 558 (829)
Q Consensus 485 ~~~~l~igs~~g~--l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--- 558 (829)
..-.+.++..|+. |+.+|-++...+-...+......++++.++|. .+++++....+|.||+.++++.......+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~ 303 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE 303 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence 3445666677774 45556566565656666665556778888887 78888888889999999988754322211
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...-.--++.++..|.+.+..|.|+.+..+|++.+-.+...+.+. ..+++.++..||+.+.+|.|+.||+....-...|
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf 382 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF 382 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence 112222234566788888999999999999999988888776543 3445555788999988999999999984333444
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.-+... .-.+.+++.++.++.+|+..|.|.+||
T Consensus 383 ~D~G~v-~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 383 VDDGSV-HGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eecCcc-ceeeeeecCCCceEEeccCcceEEEec
Confidence 433222 124566677888999999999999998
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.6e-08 Score=91.96 Aligned_cols=240 Identities=9% Similarity=0.073 Sum_probs=146.4
Q ss_pred eceEEee-CCcEEEEEEeCCEEEEEEcCC-CcEEEE--EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003331 520 CSAAVLA-DFSQVVVGCYKGKIYFLDYLT-GDIYWT--FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~-~~~~v~vg~~dg~l~~~d~~t-G~~~w~--~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
+...+++ ....+.+|++|+.|.+|+.++ |...-+ ....+.+.+ ..+.+++..+++|+-|+.+..||+.+|+..-.
T Consensus 31 S~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~-v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v 109 (347)
T KOG0647|consen 31 SALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLD-VCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV 109 (347)
T ss_pred heeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEE-EEEccCCceEEeeccCCceEEEEccCCCeeee
Confidence 4455666 445666999999999999876 554332 223344433 45677788999999999999999999976654
Q ss_pred eccCCcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 596 LPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
-...+.+...-.+... -..|..|++|.+|..||... -.++-+.++++..+. .......+.+++.+..|.+|+ +
T Consensus 110 ~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~--~~pv~t~~LPeRvYa---~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 110 AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS--SNPVATLQLPERVYA---ADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eecccceeEEEEecCCCcceeEecccccceeecccCC--CCeeeeeeccceeee---hhccCceeEEEecCCcEEEEEcC
Confidence 4333333332223221 13578899999999999886 667777777665432 222356788888899999999 7
Q ss_pred CCCEEEEeecCCceeecCcc--cccCCCeEEEEeeCCeEEEEeCCCC--cEEEEEecCCccc--cc-ccccccccccccc
Q 003331 674 SGSIIWRCRTGGPIFAGPCT--SFALPSQVLICSRNGSIYSFEQESG--NLLWEYSVGDPIT--AS-AYIDEHLQLKLES 746 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~--~~~~~~~i~~~t~~g~l~~~d~~tG--~~~w~~~~~~~~~--~~-~~~~~~~~~~~~~ 746 (829)
++....+.....--+-..++ ..+.++ -.+|+.+|.+.......+ +....++.+-... .. .+..+. .+
T Consensus 185 n~~te~k~~~SpLk~Q~R~va~f~d~~~-~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs-----i~ 258 (347)
T KOG0647|consen 185 NPPTEFKRIESPLKWQTRCVACFQDKDG-FALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS-----IA 258 (347)
T ss_pred CCcchhhhhcCcccceeeEEEEEecCCc-eEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc-----eE
Confidence 76544332211111111122 233333 477888888777766665 3334444332111 00 111111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+.-+.+.....||.+..||.+..
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eecccceEEEecCCceEEEecchhh
Confidence 2233567777778999999998754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-08 Score=103.59 Aligned_cols=281 Identities=16% Similarity=0.152 Sum_probs=173.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEE---EEcCCceeeceEE-eeCCcEEEEEEeCCEEEEEEcCCC--cEEEEEec---
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWE---IKLEGRIECSAAV-LADFSQVVVGCYKGKIYFLDYLTG--DIYWTFQT--- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~---~~~~~~~~~~~~~-~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~~~--- 556 (829)
+..++.+|+|-.|..|+...+. .|- ...+...+.+.++ ..+...+..|+.|+.|+.||.++| +.+-++..
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4467788889999999987764 232 2334443334444 556667888999999999999998 34433321
Q ss_pred ---C-C--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 557 ---C-G--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 557 ---~-~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
. + ....+....+.+..|..|+..+.|+.||+.+++.+-++..+....-...+.+++.+++.++.||.|..||+.
T Consensus 164 ~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG 243 (735)
T ss_pred ccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecc
Confidence 1 1 112222223223355667788899999999999888887666666667777778899999999999999988
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCC
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
. -..+.++..+.....+....++-..+|.|..+|.|++-| .+- +..--.+...++.... ....++.+|++|.|+
T Consensus 244 q--QrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~--~~~~~~~~WvtTtds 319 (735)
T KOG0308|consen 244 Q--QRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH--LHEHDNSVWVTTTDS 319 (735)
T ss_pred c--cceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh--hccccCCceeeeccc
Confidence 6 455666665555555555555667899999999999988 542 2111122222322211 122245679999999
Q ss_pred eEEEEeCCCCc------EEEEEecCCccccc-----cc--cccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 709 SIYSFEQESGN------LLWEYSVGDPITAS-----AY--IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 709 ~l~~~d~~tG~------~~w~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.|.+|...--. -.|.........+. |. +.+...+...+.+.+...+..-...|.+..||.-..
T Consensus 320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred cceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeee
Confidence 99998642110 01111111110000 10 111111222223455778888888999999998644
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=98.03 Aligned_cols=219 Identities=12% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++++.+|+.|+.+..|.+.+..++..+..+...+++.....+ +.++.|++|.++..|- .|++....+.+....-+.
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~-~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGED-GTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAV 146 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCc-CceEecccccceEEec--chhhhcccCCcchheeee
Confidence 6788999999999999999999998888777766555444444 4589999999999996 466655544444333333
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
..- ..+.+++|+.|..|+.|.. |+.+..+..+.......++-+ +..++.++.||.|..|+.. |+.+-.+..+.
T Consensus 147 ~~l-~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~-~~~flScsNDg~Ir~w~~~---ge~l~~~~ght 219 (745)
T KOG0301|consen 147 ASL-PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD-DSHFLSCSNDGSIRLWDLD---GEVLLEMHGHT 219 (745)
T ss_pred eec-CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEec-CCCeEeecCCceEEEEecc---Cceeeeeeccc
Confidence 333 2357889999999999985 667777766655555454444 3567778889999999985 78887776666
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
....+.....+++.+..++.|+++..|+.. ...-....++ .+++..+. .+|.|++|+.||.|+.|....
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L---~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVL---LNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEEEe---eCCCEEEeccCceEEEEEecc
Confidence 666666666678888888899999999832 3433344433 34444433 377899999999999997653
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-08 Score=103.05 Aligned_cols=268 Identities=12% Similarity=0.108 Sum_probs=148.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
...+.+-.+.+|+|+.+| |+.||..+|+.+..-..+-......++.+-.+.+|+|+++| ++..+++. |.+..-+
T Consensus 168 ~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G----~~~sn~~ 241 (671)
T COG3292 168 VALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEG----WRASNWG 241 (671)
T ss_pred eeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhh----ccccccC
Confidence 344445557899999776 99999999998764332221222223344568899999775 88888665 5544322
Q ss_pred c-----ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee--eeeeecCCEEEEEeeCCeEEEEcC
Q 003331 601 S-----IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS--LCITSANRHVICCLVDGHVVALDS 673 (829)
Q Consensus 601 ~-----~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s--~~~~~~~~~l~~~~~~g~i~~~d~ 673 (829)
. .+.. ...+..+.+|+||.+| +..+.... .............++. .-....++.+|+++.++.+...+.
T Consensus 242 ~~lp~~~I~l-l~qD~qG~lWiGTenG-l~r~~l~r--q~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 242 PMLPSGNILL-LVQDAQGELWIGTENG-LWRTRLPR--QGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred CCCcchheee-eecccCCCEEEeeccc-ceeEecCC--CCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 1 2222 2334478899999887 44444443 2211111111111111 223345789999987665544433
Q ss_pred CCCEEEEee-cCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccCC
Q 003331 674 SGSIIWRCR-TGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 674 ~g~~~w~~~-~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
+-...-.+. ..+. +-.....+...+..++..+..|.+...+..+|..+... ........+...+ .
T Consensus 318 ~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d------------~ 385 (671)
T COG3292 318 DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLED------------S 385 (671)
T ss_pred hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhc------------c
Confidence 211111111 1111 11111111223556788877888999999999876542 2222222222222 3
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-----ECCEEEEeeeCCeEEEEeccccc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-----IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-----~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
++.+|+++...+|..|+.++ .+..+......+++++. -++.+|+|+.+| |...+++.++
T Consensus 386 ~g~lWlgs~q~GLsrl~n~n---------------~~avlde~agl~ss~V~aived~dnsLWIGTs~G-lvk~~pe~~~ 449 (671)
T COG3292 386 RGRLWLGSMQNGLSRLDNKN---------------EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGG-LVKRDPESGR 449 (671)
T ss_pred CCcEEEEecccchhhhccCC---------------cccccccccCCcccceeeeeecCCCCEEEeccCC-eEecCccccc
Confidence 88999999987788887653 12222222222333332 257799999765 6677777766
Q ss_pred c
Q 003331 826 L 826 (829)
Q Consensus 826 ~ 826 (829)
+
T Consensus 450 v 450 (671)
T COG3292 450 V 450 (671)
T ss_pred h
Confidence 4
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=100.60 Aligned_cols=237 Identities=12% Similarity=0.052 Sum_probs=164.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..+++..|..|..|..||...++ ..-.+........+..+..++..+++.+.|+.+..||..+++.+.++..+..-.+
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt 265 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVT 265 (459)
T ss_pred CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccccee
Confidence 45788888888889999976555 1112222222334566777888899999999999999999999888877655444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..-+.-....++.|+.|..+..||+..+.+...+-... ....++.. ...+..+-.++.|..||..+ +........
T Consensus 266 ~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs--~~~~~sv~~ 340 (459)
T KOG0288|consen 266 AAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCS--ISDVISGHFDKKVRFWDIRS--ADKTRSVPL 340 (459)
T ss_pred eehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEec--ceeeeecccccceEEEeccC--CceeeEeec
Confidence 43343334448889999999999998876655443222 12222222 24566677889999999887 666666666
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCc---ccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPC---TSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~---~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
++ ...+..++.++..+..++.+..+..+| .+..+...+...+...++.. +..-.+..+..|+.||.||.|+..+|
T Consensus 341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred Cc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 65 346677777888899999999999999 77777766654443222211 11113457888999999999999999
Q ss_pred cEEEEEecC
Q 003331 719 NLLWEYSVG 727 (829)
Q Consensus 719 ~~~w~~~~~ 727 (829)
++.......
T Consensus 420 KlE~~l~~s 428 (459)
T KOG0288|consen 420 KLEKVLSLS 428 (459)
T ss_pred eEEEEeccC
Confidence 998766543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-07 Score=87.02 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=147.3
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.-+..|.+|..+|.|..||..|-.+-..+..+-+..++.+.+.+|..+...+.|..+..||+..|.++.++.....+...
T Consensus 33 ~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~ 112 (405)
T KOG1273|consen 33 RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGA 112 (405)
T ss_pred cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCcccee
Confidence 34678999999999999999987665556666667788999999999999999999999999999999988887776655
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEE-eeccCCcccccc---eeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVY-KLPCGGSIFGSP---AIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~---~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
.......+.+++.-.+..-+.++..+++..- .....+....++ +++..+++|++|+..|.+..+|..+ -+.+-.
T Consensus 113 q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t--~e~vas 190 (405)
T KOG1273|consen 113 QWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET--LECVAS 190 (405)
T ss_pred eeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch--heeeee
Confidence 4433334444443333333444433322111 111222222222 4677788999999999999999887 555443
Q ss_pred eccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-C-------CCCEE--EEeec--CCceeecCcccccCCC-eEEEEe
Q 003331 640 HELEV-PAFASLCITSANRHVICCLVDGHVVALD-S-------SGSII--WRCRT--GGPIFAGPCTSFALPS-QVLICS 705 (829)
Q Consensus 640 ~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g~~~--w~~~~--~~~~~~~~~~~~~~~~-~i~~~t 705 (829)
..... ...-...+...+..+.+.+.|..|..|+ + .|++- .+++. ....... +.+..+| .|..++
T Consensus 191 ~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~--ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 191 FRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK--CCFSGDGEYVCAGS 268 (405)
T ss_pred eeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh--eeecCCccEEEecc
Confidence 33222 2223344445566777777777776665 3 11111 11110 0001111 1122233 444444
Q ss_pred -eCCeEEEEeCCCCcEEEEEe
Q 003331 706 -RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 706 -~~g~l~~~d~~tG~~~w~~~ 725 (829)
....+|.|....|.++-.+.
T Consensus 269 ~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 269 ARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred ccceeEEEEecCCcceeeeec
Confidence 34579999999998875544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=98.85 Aligned_cols=267 Identities=12% Similarity=0.001 Sum_probs=170.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-CCeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~ 564 (829)
.+.|.+|... .||.|+..+|++.-..+.+...+++...+.+|..|.+|+.+|.|..||.++.+.+-++.. +..-....
T Consensus 188 ~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 4566676654 499999999998776666545566888899999999999999999999888877766655 33333333
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEe-eccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.. ....+-+|+.++.+..+|....+..-. ...+....+......++..+..|..|+.+.+||... -.++.++..+
T Consensus 267 aW--~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--~~p~~~~~~H 342 (484)
T KOG0305|consen 267 AW--NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--PEPKFTFTEH 342 (484)
T ss_pred ec--cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--ccccEEEecc
Confidence 33 346778899999999999877654433 333344445555666677888888999999999743 2333333333
Q ss_pred Ccceeeeeeeec-CCEEEEE--eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCC
Q 003331 644 VPAFASLCITSA-NRHVICC--LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQES 717 (829)
Q Consensus 644 ~~~~~s~~~~~~-~~~l~~~--~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~t 717 (829)
....-....++- .+.+.+| +.|+.|..+| .+|+.+-...++..|.+...... .+.+.. |..++.|..|+..+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~--~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKK--YKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCC--CCEEEEecCCCCCcEEEEeccc
Confidence 322233344443 3445554 4578899999 88988877777666554432221 122332 23345566666555
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
-+.+-.+..+..-.... +..+++..+++|+.|.+|..|+.-.
T Consensus 421 ~~~~~~l~gH~~RVl~l-----------a~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYL-----------ALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cceeeeecCCcceeEEE-----------EECCCCCEEEEecccCcEEeccccC
Confidence 44443333222221111 1223488999999999999997653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-07 Score=98.34 Aligned_cols=259 Identities=10% Similarity=0.061 Sum_probs=175.2
Q ss_pred CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 494 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.++.+..||.+|++.+.++..+ ...+..+.+.+.+|++|...|.|-.||..+...+-+...++....+....+++..+
T Consensus 392 a~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred CCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 3567999999999999887665 34466777888899999999999999999988876666665555555556667778
Q ss_pred EEeccCCeEEEEEcC-----CCeEEE--------eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 574 WCGSHDHNLYALDFR-----NYRCVY--------KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 574 ~~gs~~g~l~~~d~~-----tg~~~w--------~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+|+.|..+..||.+ .|.... ....... ..+..+++++..+.++-.|.++-+|-.++ -+..-..
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd-vL~v~~Spdgk~LaVsLLdnTVkVyflDt--lKFflsL 546 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD-VLCVSVSPDGKLLAVSLLDNTVKVYFLDT--LKFFLSL 546 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc-EEEEEEcCCCcEEEEEeccCeEEEEEecc--eeeeeee
Confidence 899999999998853 121111 1111222 23344566677888888899988888887 5554444
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
..+.-...++.++++.+.+..|+.|..|-+|- .-|...-.+-. ...+.+.-+++ .....|.++.|+.+..||.++-
T Consensus 547 YGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 547 YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred cccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeechhhh
Confidence 44444456778888999999999999888887 55654322211 11222222222 2446777889999999997766
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+.+-+++.+..-.....+ .+.|++++.++.|..|.+|....
T Consensus 625 e~iq~L~~H~~ev~cLav-----------~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 625 EEIQKLDGHHSEVWCLAV-----------SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred hhheeeccchheeeeeEE-----------cCCCCeEEeccCCceeEeeeccC
Confidence 555555433322222212 23388999999999999997654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=105.83 Aligned_cols=187 Identities=10% Similarity=-0.068 Sum_probs=152.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.++..|..+|.|+.+..|.+.|-...-.++.+....+.+.+++.|-++..++.|++-..|....-+.+..+..+-.-..+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~c 540 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDC 540 (707)
T ss_pred ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccce
Confidence 46788888999999999999887766666666655666778877767778888888888876666666555444333444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+...++.+||.|.+++.||..+|..+..+..+.....+..+++.+..+..|+.+|.|..||+.+ |+.+-.+..+
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~H 618 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGH 618 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCC--Ccchhhhhcc
Confidence 56777889999999999999999999999999988777777888888788899999999999999998 8887777666
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.....+..++.+++.+.+|+.|..|..||
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 66677888888999999999999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-07 Score=93.48 Aligned_cols=195 Identities=12% Similarity=0.143 Sum_probs=133.6
Q ss_pred eceEEeeCCcEEEEEEeCCEE--EEEEcCCCcEEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEcCCCeEEEee
Q 003331 520 CSAAVLADFSQVVVGCYKGKI--YFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l--~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.++-+.+....+.+++.|+.+ |.+|-++...+..............+.+.+. .|++++....+|.||..+++.....
T Consensus 217 ~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~ 296 (514)
T KOG2055|consen 217 TSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK 296 (514)
T ss_pred eEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccccc
Confidence 355666766778888899865 5556555555555555554444455666555 7888888899999999998765433
Q ss_pred ccCCc---ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 597 PCGGS---IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 597 ~~~~~---~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
...+. ..-..-++.++..|.+.+..|.|+.+...+ ++.+-.++..+.. ...++..++..+|+.+.+|.|+.||
T Consensus 297 ~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT--~eli~s~KieG~v-~~~~fsSdsk~l~~~~~~GeV~v~nl 373 (514)
T KOG2055|consen 297 PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT--KELITSFKIEGVV-SDFTFSSDSKELLASGGTGEVYVWNL 373 (514)
T ss_pred CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh--hhhhheeeeccEE-eeEEEecCCcEEEEEcCCceEEEEec
Confidence 32221 222223445567888888999999998877 8777777665543 5566777888999999999999999
Q ss_pred CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 673 SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 673 ~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.....+.++...+.+.............+.+|+..|.|..||.++
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 666777777766655433322222344677788889899998543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.9e-08 Score=104.15 Aligned_cols=199 Identities=9% Similarity=0.026 Sum_probs=149.3
Q ss_pred cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 514 LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 514 ~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
.+.+.+....++++...++.++.|+++..|.+.|-..+-.|..+........+.+.+-++.++++|+.-..|....-+++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 34444556778888889999999999999999888777777766554444456665555667889998888887776777
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
..+..+-.-.....+.++..++..|+.|.++..||..+ |..+-.+..+.....+.++++.+.++..|+.+|.|..||
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~--G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST--GNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCC--CcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 66665555555566777778888899999999999998 887777766666678888999999999999999999999
Q ss_pred CCCCEEEEeecCC-ceeecCcccccCC-CeEEEEeeCCeEEEEeCCC
Q 003331 673 SSGSIIWRCRTGG-PIFAGPCTSFALP-SQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 673 ~~g~~~w~~~~~~-~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~t 717 (829)
.+|+++-++.... .+.+.. +..+ +.+.+|+.|+.|..||..+
T Consensus 607 ~~~~~v~~l~~Ht~ti~Sls---FS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLS---FSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEE---EecCCCEEEecCCCCeEEEEEchh
Confidence 8988876554332 233322 2334 4566778889999998654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-06 Score=92.33 Aligned_cols=144 Identities=13% Similarity=0.087 Sum_probs=107.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.-.+.+|=.||.|..||..++...-+++.+.......-+...|..+..|+.|+.|..||.-.-.-+.++..+......
T Consensus 75 ~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~ 154 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQ 154 (888)
T ss_pred CCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhH
Confidence 34456789999999999999988888888888776666678888889999999999999997665556666665554444
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
..+..++..++..+.|+.+..||.++..+..+.-.+....-..++++ +.++.++.++.+..|++
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWEL 218 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEe
Confidence 44554567788888999999999999887766544433333444544 66677777777777765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-06 Score=89.97 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=159.1
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEE
Q 003331 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKI 540 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l 540 (829)
.+.+-+++++...-+. +.+..++.++|+.+.+|.|..+|+.+++.+.+.+.+... ....++.||++++++++ .+.+
T Consensus 26 ~~~~~~i~~~~~~h~~--~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~-~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAG--LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNP-RGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp -SEEEEEE-STTEEEE--EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEE-EEEEE--TTTEEEEEEEETTEE
T ss_pred CeEEEEEcCCCCceeE--EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCc-ceEEEcCCCCEEEEEecCCCce
Confidence 3444566665443222 223445778999999999999999999999988877654 35778899999999975 7899
Q ss_pred EEEEcCCCcEEEEEecCCe------eeeeeeee-cCCCEEEEe-ccCCeEEEEEcCCCeEEEe--eccCCcccccceeec
Q 003331 541 YFLDYLTGDIYWTFQTCGE------VKCQPVVD-APRQLIWCG-SHDHNLYALDFRNYRCVYK--LPCGGSIFGSPAIDE 610 (829)
Q Consensus 541 ~~~d~~tG~~~w~~~~~~~------~~~~~~~~-~~~~~i~~g-s~~g~l~~~d~~tg~~~w~--~~~~~~~~~~~~~~~ 610 (829)
..+|.+|.+++.++.+.+. ...+.++. +.....++. -..+.+..+|..+.+.+.. ...+. ......+++
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~-~~~D~~~dp 181 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR-FPHDGGFDP 181 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T-TEEEEEE-T
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc-cccccccCc
Confidence 9999999999988765432 12223332 233323333 3347788888766543332 22221 222334566
Q ss_pred CCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcce---eeeeeeecCCEEEEEeeCCeE----------EEEc-CCC
Q 003331 611 VHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAF---ASLCITSANRHVICCLVDGHV----------VALD-SSG 675 (829)
Q Consensus 611 ~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~---~s~~~~~~~~~l~~~~~~g~i----------~~~d-~~g 675 (829)
++.+++++. .+..+.++|.++ ++..+..+.+.... ....+.+..+.+|.-...+.. .+++ .+.
T Consensus 182 dgry~~va~~~sn~i~viD~~~--~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w 259 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKT--GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW 259 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTT--TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT
T ss_pred ccceeeecccccceeEEEeecc--ceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC
Confidence 566777754 456788999887 88777665432211 122233445556654433221 2234 444
Q ss_pred CEEEEeecCCceeecCcccccCCCeEEEE----eeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccC
Q 003331 676 SIIWRCRTGGPIFAGPCTSFALPSQVLIC----SRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 676 ~~~w~~~~~~~~~~~~~~~~~~~~~i~~~----t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 749 (829)
+.+-+....+..+.... .-....+|+. ...+.|..+|.++-+..-++..... ....- ...
T Consensus 260 kvv~~I~~~G~glFi~t--hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e------------f~~ 325 (369)
T PF02239_consen 260 KVVKTIPTQGGGLFIKT--HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME------------FNP 325 (369)
T ss_dssp SEEEEEE-SSSS--EE----TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE------------E-T
T ss_pred eEEEEEECCCCcceeec--CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE------------ECC
Confidence 55555555432221111 1134579998 3457899999998866544332111 11111 123
Q ss_pred CCcEEEEEccCCc--EEEEEeecC
Q 003331 750 IDRLVCICTSSGS--IHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~--l~~~d~~~~ 771 (829)
++..+|++..++. |.++|..+.
T Consensus 326 dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTT
T ss_pred CCCEEEEEEecCCCEEEEEECCCc
Confidence 4888998877655 999998865
|
... |
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-07 Score=101.99 Aligned_cols=183 Identities=13% Similarity=0.166 Sum_probs=129.0
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee
Q 003331 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
++.|+.++.|.++..|++...+++..|.....+.+..+-.-++++.+.|+.||.+..|++.. -+...-.++. ..+.+
T Consensus 380 n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~-~lITA 456 (712)
T KOG0283|consen 380 NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLR-DLITA 456 (712)
T ss_pred CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehhhh-hhhee
Confidence 57788899999999999999999998876655544333333456777899999999999886 4444333443 45578
Q ss_pred eeeeecCCEEEEEeeCCeEEEEc-CCCCEE--EEeec-------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003331 650 LCITSANRHVICCLVDGHVVALD-SSGSII--WRCRT-------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 650 ~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~--w~~~~-------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.++.++++..++|+.+|....|+ .+-++. |++.. +..|...-+.+.. .+.|.+.+.|..|..||..+-+
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~-~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD-PDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC-CCeEEEecCCCceEEEeccchh
Confidence 88999999999999999999999 444443 33221 1123333222222 2379999999999999998777
Q ss_pred EEEEEecCCc----cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 720 LLWEYSVGDP----ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 720 ~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++-+++...+ +.+.. ..++.+|+.++.|..||+|+.+
T Consensus 536 lv~KfKG~~n~~SQ~~Asf-------------s~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 536 LVHKFKGFRNTSSQISASF-------------SSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hhhhhcccccCCcceeeeE-------------ccCCCEEEEeecCceEEEEeCC
Confidence 7766653222 22211 1238899999999999999863
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-06 Score=84.60 Aligned_cols=268 Identities=15% Similarity=0.099 Sum_probs=158.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-eeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEee--c--cCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKL--P--CGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~--~~~ 600 (829)
.+.|+.|||||.+..|| ..|+...++..+.. ++...-+ .+....+..++.|..+..|-.+.|+..-+. . .+.
T Consensus 115 ~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 56899999999999999 67888887766543 3322222 223456888999988877766655433221 1 122
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCC---ce--------------------EEEeeccCCcceeeeeeeecCC
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP---FH--------------------TLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~---g~--------------------~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
...-+.....++.++..|+.|..|-.|+..+.. ++ ++-....+....++ ....+..
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~-V~w~d~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSS-VVWSDAT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceee-EEEcCCC
Confidence 333444455566788889999999999822210 11 01111111111122 3334578
Q ss_pred EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc--EE-EEEecCCccccc
Q 003331 658 HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN--LL-WEYSVGDPITAS 733 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~--~~-w~~~~~~~~~~~ 733 (829)
.+|.++.|-+|..|| .+|..+-+...+.......... ....|..|+.|..+..||++++. .. .++..+.+...+
T Consensus 273 v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 273 VIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP--LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred ceEeecccceEEEEEeecccceeeeecCcceeEeeccc--ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 899999999999999 8888877766665544433222 24578888999999999998863 32 233323222211
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeC
Q 003331 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRD 813 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~ 813 (829)
.- ....+...++.++.|+.+..||.++-..- ++........+++.-=..+..|..|+.|
T Consensus 351 vk----------wsp~~~~~~~S~S~D~t~klWDvRS~k~p-----------lydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 351 VK----------WSPTNEFQLVSGSYDNTVKLWDVRSTKAP-----------LYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ee----------cCCCCceEEEEEecCCeEEEEEeccCCCc-----------ceeeccCCceEEEEeccCCceEEeccCc
Confidence 10 01123667888999999999999854110 0100011111221111123467778888
Q ss_pred CeEEEEe
Q 003331 814 DYIYCIA 820 (829)
Q Consensus 814 g~l~~~d 820 (829)
..|+.+.
T Consensus 410 ~~l~i~~ 416 (423)
T KOG0313|consen 410 NKLRIFK 416 (423)
T ss_pred ceEEEec
Confidence 8888875
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=81.43 Aligned_cols=247 Identities=14% Similarity=0.100 Sum_probs=160.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE--EEEEcCCceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.+.++..|+.++.+..|+..-++++ |....+....-..+.. ...+.+.+.+.|..+..||...+++.-.....++..
T Consensus 31 ~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni 110 (313)
T KOG1407|consen 31 DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI 110 (313)
T ss_pred cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce
Confidence 4567888888998888888766443 2222232211223332 233467788889999999999999988777655432
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.....++++++.++..|..|..+|..+-+.+-..+..-.. .-.+...+++..+..+..|.+.++..-. -+++...+
T Consensus 111 -~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~-ne~~w~~~nd~Fflt~GlG~v~ILsyps--Lkpv~si~ 186 (313)
T KOG1407|consen 111 -NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV-NEISWNNSNDLFFLTNGLGCVEILSYPS--LKPVQSIK 186 (313)
T ss_pred -EEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee-eeeeecCCCCEEEEecCCceEEEEeccc--cccccccc
Confidence 2356678899999999999999999887776554332111 1112222234444455558887777554 56666666
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee-cCCceeecCcccccCC-CeEEEEeeCCeEEEEeCCCC
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG 718 (829)
.+...-..+.+.+++.++.+|+.|..+..|| ..--..-.++ ..-++.... +.-+ ..|-.+++|..|-.=+.+||
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS---FS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS---FSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE---eccCcceeeccCccceEEeEecccC
Confidence 6554445666778899999999999888888 4322221221 122332222 2223 45667788988888899999
Q ss_pred cEEEEEecCCcccccccccc
Q 003331 719 NLLWEYSVGDPITASAYIDE 738 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~ 738 (829)
..+|+.+..++.+...+...
T Consensus 264 d~~~eI~~~~~t~tVAWHPk 283 (313)
T KOG1407|consen 264 DRVWEIPCEGPTFTVAWHPK 283 (313)
T ss_pred CeEEEeeccCCceeEEecCC
Confidence 99999998888766555543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-06 Score=83.87 Aligned_cols=276 Identities=12% Similarity=0.067 Sum_probs=157.1
Q ss_pred CcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCCeE
Q 003331 528 FSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNYRC 592 (829)
Q Consensus 528 ~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg~~ 592 (829)
...+|+-... +.++.+|..+++++-++..+..... +++++++.+|++.. ++.|..||.+|++.
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~--~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP--VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce--eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 3456665443 7899999999999988887654443 36778888998755 57899999999999
Q ss_pred EEeeccCCc-------ccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe
Q 003331 593 VYKLPCGGS-------IFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL 663 (829)
Q Consensus 593 ~w~~~~~~~-------~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~ 663 (829)
+.++..+.. ......+++++..+|+... +..+.++|+.+ ++.+-....+.... .-...+.... +-+
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~--~kvv~ei~vp~~~~--vy~t~e~~~~-~~~ 164 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG--KAFVRMMDVPDCYH--IFPTANDTFF-MHC 164 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC--CcEEEEEeCCCCcE--EEEecCCccE-EEe
Confidence 998876433 1223456777788998773 57899999988 88877766543221 1112122222 223
Q ss_pred eCCeEEEE--cCCCCEEEEe-ec--C--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEecCCcccc
Q 003331 664 VDGHVVAL--DSSGSIIWRC-RT--G--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL----LWEYSVGDPITA 732 (829)
Q Consensus 664 ~~g~i~~~--d~~g~~~w~~-~~--~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~~~~~~~~ 732 (829)
.||....+ +.+|+..-.. .. . .+++.-|.. ...++..++.+..|.|+.+|..+.+. .|........ .
T Consensus 165 ~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~-~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~-~ 242 (352)
T TIGR02658 165 RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAY-SNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEK-A 242 (352)
T ss_pred ecCceEEEEecCCCceEEeeeeeecCCccccccCCce-EcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccc-c
Confidence 45555443 3556533111 11 1 223333311 12134444444459999999544332 2332111100 0
Q ss_pred ccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE
Q 003331 733 SAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM 802 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 802 (829)
..+....++. .+....++.+|+... .+.|+++|..++ +.............-.+.
T Consensus 243 ~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~-------------kvi~~i~vG~~~~~iavS 307 (352)
T TIGR02658 243 DGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG-------------KRLRKIELGHEIDSINVS 307 (352)
T ss_pred cccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC-------------eEEEEEeCCCceeeEEEC
Confidence 0000000000 112234788888532 236999998865 444444443333222222
Q ss_pred -ECC-EEEEeee-CCeEEEEeccccccc
Q 003331 803 -IGG-RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 803 -~~~-~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
++. .||+.+. ++.|..+|..+++..
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 345 6777763 677999999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.9e-07 Score=99.81 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=89.0
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE--Eec
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV--LVE 95 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~--i~d 95 (829)
..++.++++||+++++..+.+.+.| ++++++.||+|| +.++ ..|..- .+..--..+-++ ++|
T Consensus 212 ~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~la--~eC~~g------------~lHl~ed~~~vE~~ivD 275 (430)
T TIGR02304 212 IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GFLA--STCRCG------------TLHLNEDLVHIEKQYLD 275 (430)
T ss_pred CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hheE--EecCCC------------CEEEccccEEEEeeEEC
Confidence 4799999999999999999999999 789999999999 4432 223210 011111122333 666
Q ss_pred CCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC----Cc----E-EEE
Q 003331 96 SDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS----GD----L-VFL 166 (829)
Q Consensus 96 ~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~----G~----l-~~~ 166 (829)
+++ .++.+|.+ +.+. ...++ -|+|||+++..++ |. | .+.
T Consensus 276 ~~~----~~~~ViT~------L~n~----~~PlI------------------RYrtGD~~~~~~~~C~CGr~~~~i~~I~ 323 (430)
T TIGR02304 276 EHK----RFVPIITD------FTRT----TQPIV------------------RYRLNDILVESEQPCSCGSATMAIERIE 323 (430)
T ss_pred CCC----ceEEEEec------CCCc----cceEE------------------eeeCCCEEEeCCCCCCCCCcccccCCcc
Confidence 543 13333332 2221 11222 2999999987443 43 3 388
Q ss_pred eecCCcEEE---CC--eeeChHHHHHHHh-CCCCeeEEEEEE
Q 003331 167 GRKDRTIKI---NG--QRMALEEIEHTLR-GHPDVVDTAVVS 202 (829)
Q Consensus 167 GR~dd~ik~---~G--~~i~~~~iE~~l~-~~~~v~~~~v~~ 202 (829)
||.||++++ +| .+|.|..++.++. ..+.|.+.-++.
T Consensus 324 GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q 365 (430)
T TIGR02304 324 GRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQ 365 (430)
T ss_pred CccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEE
Confidence 999999996 44 4459999998744 578888876664
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-06 Score=93.03 Aligned_cols=263 Identities=13% Similarity=0.079 Sum_probs=166.0
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCccccccee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~ 608 (829)
.|.++. ...+|+|+..+|++.-..+.+..-.++..+..++..|.+|..+|.+..||.++.+.+..... +..-++....
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 455554 55799999999998777776555566667777889999999999999999988776666554 3333333333
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 686 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~ 686 (829)
. ...+-.|+.++.+..+|... .+..-. ...+....-......++..+..|..|+.+.+|| .+-.++.++.....
T Consensus 269 ~--~~~lssGsr~~~I~~~dvR~--~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a 344 (484)
T KOG0305|consen 269 N--SSVLSSGSRDGKILNHDVRI--SQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA 344 (484)
T ss_pred c--CceEEEecCCCcEEEEEEec--chhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccce
Confidence 3 47788899999999988776 333222 222222223345566788888888999999999 55455444433222
Q ss_pred -eeecCcccccCCCeEEEE--eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE--EEccCC
Q 003331 687 -IFAGPCTSFALPSQVLIC--SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC--ICTSSG 761 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~~~--t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~G 761 (829)
+......+. ..+.|.+| +.|+.|..||..+|+.+-....++.+....+... .+.+. .|..++
T Consensus 345 AVKA~awcP~-q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~------------~kEi~sthG~s~n 411 (484)
T KOG0305|consen 345 AVKALAWCPW-QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKK------------YKELLSTHGYSEN 411 (484)
T ss_pred eeeEeeeCCC-ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCC------------CCEEEEecCCCCC
Confidence 211111111 23455554 5789999999999999888887777755544433 22222 345566
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEeccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~t 823 (829)
.|.+|+..+- +......-+...+-.... ++..|.+|+.|.+|.+|+.-+
T Consensus 412 ~i~lw~~ps~-------------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 412 QITLWKYPSM-------------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred cEEEEecccc-------------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 6777765431 111111111111111111 467999999999999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-06 Score=87.63 Aligned_cols=232 Identities=11% Similarity=0.057 Sum_probs=151.6
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
...+..|..|..+.++|..+++.+-.++.+..-.....+..+...+.+++.|..|+.|...+-...-....+........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 45678888888899999999988877777766556667777777888899999999998766544333333333333334
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+.+++.++.|++....|..+|..+-+..... -...+..+.+++-.+-.|+.+|.+..||++. +...-++..+
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--~~~~a~Fpgh 388 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--QTNVAKFPGH 388 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--ccccccCCCC
Confidence 45577889999999988888999999887765532 2345666777444555678899999999987 5555556555
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--ceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCc
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.....+..+..++=.+.+++.++.|.+|| +.-+..-++.... ++.+ +.++.. ..+.+++.+=.||.++.. +
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s---~~fD~SGt~L~~~g~~l~Vy~~~k~--~ 463 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNS---LSFDQSGTYLGIAGSDLQVYICKKK--T 463 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecccccccee---EEEcCCCCeEEeecceeEEEEEecc--c
Confidence 44445566654444566677788899999 5443332333322 1222 123333 345555555556666544 3
Q ss_pred EEEEE
Q 003331 720 LLWEY 724 (829)
Q Consensus 720 ~~w~~ 724 (829)
-.|+.
T Consensus 464 k~W~~ 468 (506)
T KOG0289|consen 464 KSWTE 468 (506)
T ss_pred cccee
Confidence 45654
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=92.07 Aligned_cols=261 Identities=11% Similarity=0.079 Sum_probs=155.2
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
..++.|+.||.|..||+.+.+++|++..+.+.+...++.. +..+.+| .|.+|..|.. .|..+.++.....+...-..
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvg-dDKtvK~wk~-~~~p~~tilg~s~~~gIdh~ 156 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVG-DDKTVKQWKI-DGPPLHTILGKSVYLGIDHH 156 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEec-CCcceeeeec-cCCcceeeeccccccccccc
Confidence 4588899999999999999999999999887766666655 3444444 5888888873 45555555433322211111
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
..+.+++.+ ...+-.||..--.++..+..+...+.+.-+.+. ...|..+..|+.|+.||..+ +.++.+......
T Consensus 157 --~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~--~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 157 --RKNSVFATC-GEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ--ASPLKKVILTMR 231 (433)
T ss_pred --ccccccccc-CceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc--CCccceeeeecc
Confidence 112233322 235888988666666555544433333222221 24455566899999999887 776665543322
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
. ..++..+..-...+++.|..+|.+| ..- ..+-.+.. ...+....+.+ .+..+..|+.|..|..|....|.-.-
T Consensus 232 T-N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 232 T-NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred c-cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC--CcchhccccccceEEEeecCCCcchh
Confidence 1 3445555444566677889999999 432 22222211 11222222211 24468889999999999988776432
Q ss_pred EEec--CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 723 EYSV--GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 723 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
.|.. -..+.+..+. .+..+++.|++++.|..|.+..
T Consensus 309 iYhtkRMq~V~~Vk~S------------~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 309 IYHTKRMQHVFCVKYS------------MDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhHhhhheeeEEEEe------------ccccEEEecCCCcceeeeecch
Confidence 2211 1112222222 2378999999999999997753
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.7e-07 Score=84.88 Aligned_cols=193 Identities=11% Similarity=0.058 Sum_probs=125.1
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+..++..|.++.+||.||.|..||..|-.+-..+..+-...++.+++.++..++++|.|..+..||...|.++.++...
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence 35678888899999999999999999887765555556566677788888899999999999999999999999988887
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCCcceee---eeeeecCCEEEEEeeCCeEEEEc-CC
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEVPAFAS---LCITSANRHVICCLVDGHVVALD-SS 674 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s---~~~~~~~~~l~~~~~~g~i~~~d-~~ 674 (829)
.+++.......+.+..++.-.+..-+.++..+ ++..-. .+.......+ ..+...+++++.|+..|.+.+++ .+
T Consensus 107 spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred CccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 77766555444344443333333233444333 111110 0111111111 23555688999999999999999 77
Q ss_pred CCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 675 GSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 675 g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
-+.+..+.... .+-.. +....+..+.+-+.|..|..|+.+
T Consensus 185 ~e~vas~rits~~~IK~I--~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQI--IVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred heeeeeeeechheeeeEE--EEeccCcEEEEecCCceEEEEehh
Confidence 66664433221 11111 112234456677777777777654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-06 Score=80.14 Aligned_cols=202 Identities=15% Similarity=0.078 Sum_probs=144.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
...+..++.+..+..||..++++.-........ ...+.+++|+++.++..|..|..+|..+-+++..++..-.+.- ..
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne-~~ 154 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNE-IS 154 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeee-ee
Confidence 345677788889999999999998776654432 2567889999999999999999999998888766554332221 12
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
+..+++.++..+..|.+..+.-..-+++..++.+......+.+++++.++.+|+.|..+-.||++. --..-.+.....
T Consensus 155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E--LiC~R~isRldw 232 (313)
T KOG1407|consen 155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE--LICERCISRLDW 232 (313)
T ss_pred ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--hhhheeeccccC
Confidence 233445555555568888888777788877777665545566788888999999999889999875 222222222222
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
..-+..++-++.++..++.|-.|-.-+ ++|..+|+.+..++.++..
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVA 279 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVA 279 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEE
Confidence 234566677888888888887776666 9999999999888776654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-05 Score=74.97 Aligned_cols=255 Identities=14% Similarity=0.157 Sum_probs=163.1
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcEEEEEecCCeee----
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDIYWTFQTCGEVK---- 561 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~~w~~~~~~~~~---- 561 (829)
++++.+|..+++.+-..+.+-. ....++++++.+|+.+. ..-|-.||.+|-++.+....+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5899999999998877665432 35677889999997532 2348899999999999888765311
Q ss_pred ---eeeeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 562 ---CQPVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 562 ---~~~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
....++.+++.+|+- +-.-.|-.+|.+.++.+-.+...+.....|.- +...+.-+.||.+..+.++. .|+.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~---~~~F~~lC~DGsl~~v~Ld~-~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSG---NRGFSMLCGDGSLLTVTLDA-DGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEE---TTEEEEEETTSCEEEEEETS-TSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecC---CCceEEEecCCceEEEEECC-CCCE
Confidence 112345566777764 33457899999999999888887765544432 35677777899998888874 2665
Q ss_pred EEeec-----cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecC----------C-ceeecCcccc
Q 003331 637 LWLHE-----LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTG----------G-PIFAGPCTSF 695 (829)
Q Consensus 637 ~w~~~-----~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~----------~-~~~~~~~~~~ 695 (829)
.-+.. ...+.|..+.....++.+++.+.+|.|+..| ...... |..-.. + ..+.. .
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~----~ 246 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY----H 246 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE----E
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee----c
Confidence 52221 1234555666666678888899999999999 544433 332110 0 01111 2
Q ss_pred cCCCeEEEEeeCC----------eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE-ccCCcEE
Q 003331 696 ALPSQVLICSRNG----------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIH 764 (829)
Q Consensus 696 ~~~~~i~~~t~~g----------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~l~ 764 (829)
...+.+|+--+.| .|+.+|.++++.+.+.++...+.+.....+ ..-++|.. ..++.|+
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd-----------~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQD-----------DKPLLYALSAGDGTLD 315 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESS-----------SS-EEEEEETTTTEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccC-----------CCcEEEEEcCCCCeEE
Confidence 2456888865433 599999999999887776555432221111 15567655 4578899
Q ss_pred EEEeecC
Q 003331 765 ILRVNLD 771 (829)
Q Consensus 765 ~~d~~~~ 771 (829)
++|..+|
T Consensus 316 v~D~~tG 322 (342)
T PF06433_consen 316 VYDAATG 322 (342)
T ss_dssp EEETTT-
T ss_pred EEeCcCC
Confidence 9999977
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-06 Score=87.13 Aligned_cols=270 Identities=12% Similarity=0.080 Sum_probs=162.3
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEE-EEE----EcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVL-WEI----KLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~-w~~----~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
+..+-+++.|+.|..|.+||...-.-. ..| +.......+..++..++.|++.+...-...|| .+|..+-.+.-+
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~~~~e~~KG 254 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD-RDGFEIVEFSKG 254 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc-cCCceeeeeecc
Confidence 456779999999999999997531110 011 12223344566777778888777677788888 778776655433
Q ss_pred Ce-------------eeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeE-E--Eeecc-C-Cc-ccccceeecCCCEEEE
Q 003331 558 GE-------------VKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRC-V--YKLPC-G-GS-IFGSPAIDEVHDVLYV 617 (829)
Q Consensus 558 ~~-------------~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~-~--w~~~~-~-~~-~~~~~~~~~~~~~l~v 617 (829)
+. -..+..+.+ ..+.+++.++||.++.||..+-+. + .+... + .. ...++.++.++..|..
T Consensus 255 DQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 255 DQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred chhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 21 111222332 356688899999999999875432 1 11111 1 12 3345566776777788
Q ss_pred EecCCeEEEEEccCCCceEEEeec-c--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEeec-CCceeecC
Q 003331 618 ASTSGRLTAISVKALPFHTLWLHE-L--EVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCRT-GGPIFAGP 691 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~-~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~-~~~~~~~~ 691 (829)
|..+|.|..|+....+-.+...+. . ......++.++.+++++..=+.|+.+.+|| . -.+.+..... ..+.-...
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTD 414 (641)
T ss_pred cccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCc
Confidence 888999999996432222222221 1 223457778888888888888899999999 3 3444432221 11111111
Q ss_pred cccccCC-CeEEEEee------CCeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 692 CTSFALP-SQVLICSR------NGSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 692 ~~~~~~~-~~i~~~t~------~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
|. +..+ ..|+.|+. .|.|+.||..+-..+.++.+.... ....+. +.=+.|++|+.||++
T Consensus 415 c~-FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh------------pkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 415 CC-FSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH------------PKLNQIFAGSGDGTA 481 (641)
T ss_pred cc-cCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec------------chhhheeeecCCCce
Confidence 22 2223 34555542 468999999998888877765322 112222 224678899999999
Q ss_pred EEE
Q 003331 764 HIL 766 (829)
Q Consensus 764 ~~~ 766 (829)
++|
T Consensus 482 ~vy 484 (641)
T KOG0772|consen 482 HVY 484 (641)
T ss_pred EEE
Confidence 876
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=88.21 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=140.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC-cEEEEEEcCC-----------c-----eee----ceEEe-eCCcEEEEEEeCCEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRS-SVLWEIKLEG-----------R-----IEC----SAAVL-ADFSQVVVGCYKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-~~~w~~~~~~-----------~-----~~~----~~~~~-~~~~~v~vg~~dg~l~~ 542 (829)
.++++.+|+.+-.|-.||+.=- ...-.+.++. + -.. ..... .-.+.|..|+.|.+|..
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3568999999999999987521 1111111110 0 000 01111 11246888999999999
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcC---CCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 543 LDYLTGDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFR---NYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~---tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
||..+|++.-++..++.-..+..+. .....++.|++|+.+...|.. .-...|++...-....---. .....+++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~--se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH--SENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC--CceeEEEe
Confidence 9999999998877544333333333 345678889999999999977 44467877543221111111 12668889
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-C--CCCEEEEeecCCceeecCccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD-S--SGSIIWRCRTGGPIFAGPCTS 694 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~--~g~~~w~~~~~~~~~~~~~~~ 694 (829)
+.+|.|+.+|... .|+.+|+.+.+...+++.++... .+.+..++.++.+..|+ . +.+........-....+....
T Consensus 349 tddG~v~~~D~R~-~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 349 TDDGTVYYFDIRN-PGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred cCCceEEeeecCC-CCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 9999999999986 47999999887766666555433 45566677778787776 2 332222111110111111111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
......+.+|...+.+..||..++..
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CCcceEEEecCccceEEEeecccChh
Confidence 22334666777777788888776654
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-05 Score=71.13 Aligned_cols=262 Identities=10% Similarity=0.095 Sum_probs=159.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEE-----cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE--EEEecCCee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIK-----LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY--WTFQTCGEV 560 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~--w~~~~~~~~ 560 (829)
.++.++.|..|..|+...+.- |... .+.+..-+++.++.+.+|.++++|.++..|...+++.. -..+.+..-
T Consensus 29 ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE 107 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE 107 (312)
T ss_pred EEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc
Confidence 477778888999999775432 5543 23455567888899999999999999999987777654 334444433
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeE---EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc-CCCceE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK-ALPFHT 636 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~-~~~g~~ 636 (829)
.-+..+..+++++.+.+.|..+..|....+.. .-.++.+..-.-..+..+..+.|+.++.|++|..|.-. ...=..
T Consensus 108 VK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c 187 (312)
T KOG0645|consen 108 VKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC 187 (312)
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE
Confidence 33456777889999999999999998764432 22222222222223344445788889999999888766 211223
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..++.......-+..+.+.+.++..++.++.+.++- .++ +......+++..| -. ++.|-.++.|+.|..|..
T Consensus 188 ~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~---W~-~~~IaS~ggD~~i~lf~~ 260 (312)
T KOG0645|consen 188 VQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVP---WD-NGVIASGGGDDAIRLFKE 260 (312)
T ss_pred EEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeee---ec-ccceEeccCCCEEEEEEe
Confidence 333333333445556666677888888888776654 211 1111122344443 22 567888888888887765
Q ss_pred CCC--cEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 716 ESG--NLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 716 ~tG--~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.++ ...|+.-. ...+.+..+.. ...+++..++.||.|.+|..
T Consensus 261 s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-----------~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 261 SDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-----------KVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCchHHHHHhhhcccccccceEEEcC-----------CCCCceeecCCCceEEEEEe
Confidence 542 22332211 11111111111 12688999999999998864
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-07 Score=90.92 Aligned_cols=218 Identities=16% Similarity=0.122 Sum_probs=151.1
Q ss_pred ccccccccccccccc-----ccc---ceEE-eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE
Q 003331 460 GFIQELWKVHMESCV-----DAS---PLVV-LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ 530 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~-----~~s---p~v~-~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 530 (829)
...-.+|.+..+++- .++ ..-+ +..++..++..++|+.+..||..+++.+-++..+..-.+++-+......
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc
Confidence 455677988877742 111 1111 2334567778889999999999999888777776554444445444445
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003331 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
++.|+.|..+..||...+.+..++-....+.. ++.. .-.+..|-.|+.|+.||..++.+......++.+ .+..+..
T Consensus 276 vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnD--I~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~v-tSl~ls~ 351 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKAYCSKTVLPGSQCND--IVCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRV-TSLDLSM 351 (459)
T ss_pred eeeccccchhhhhhhhhhheeccccccccccc--eEec-ceeeeecccccceEEEeccCCceeeEeecCcce-eeEeecc
Confidence 89999999999999988877665433322211 1111 233555667899999999999999998888744 4444555
Q ss_pred CCCEEEEEecCCeEEEEEccCCCceEEEeeccCC----cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003331 611 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEV----PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~----~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
++..|...+.+..+-.+|..+ .++...+.... ......++++++.++..|+.+|.|++|+ .+|++......
T Consensus 352 ~g~~lLsssRDdtl~viDlRt--~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 352 DGLELLSSSRDDTLKVIDLRT--KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCeEEeeecCCCceeeeeccc--ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 567788888999999999887 45544443221 1124567888999999999999999999 88988766654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-06 Score=77.04 Aligned_cols=215 Identities=10% Similarity=0.054 Sum_probs=141.8
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
+.....-+..+|+.++..+.|...-.|-..+|+.+-++..+.....+.-++-+...+++|+.|..+..||.++|+.+...
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 33334455667888999999998888888899999988876544444445556788999999999999999999998777
Q ss_pred ccCCcccccceeecCCCEEEEEec-----CCeEEEEEccCCC-----ceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAST-----SGRLTAISVKALP-----FHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-----~g~l~~~~~~~~~-----g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
..+..+...- ++..++.+.+.+. .+.|..+++...+ -++..+...+.....+....+.+..|+.|-.+|
T Consensus 91 k~~~~Vk~~~-F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G 169 (327)
T KOG0643|consen 91 KTNSPVKRVD-FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG 169 (327)
T ss_pred ecCCeeEEEe-eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCC
Confidence 6665544333 3333444444443 3567778776322 122444444333334445556788999999999
Q ss_pred eEEEEc-CCCCEEEEee-cCCceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc
Q 003331 667 HVVALD-SSGSIIWRCR-TGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASA 734 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~-~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 734 (829)
.|..|| .+|+..-... ......+. +....+.. .+.++.|..-..+|..+-.++-+|....++.+..
T Consensus 170 ~is~~da~~g~~~v~s~~~h~~~Ind--~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 170 SISIYDARTGKELVDSDEEHSSKIND--LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred cEEEEEcccCceeeechhhhcccccc--ccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 999999 8886653321 11111111 12223444 4456788899999999988888887777765544
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-05 Score=76.65 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC--CEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+...|-+|+.+| ...|+...-........++-...-..++.+ .+.+-+.+ ..+..++.+.+..+-.+..+..+.+
T Consensus 16 d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~ 92 (391)
T KOG2110|consen 16 DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILA 92 (391)
T ss_pred ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEE
Confidence 445677788887 455554432222222222222223333332 33333323 2477778777777777776666654
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCC--EEEE--EecCCeEEEEEccCCCceEE
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHD--VLYV--ASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~--~l~v--~t~~g~l~~~~~~~~~g~~~ 637 (829)
.-. ..+++.+.-.+ .+|.+|+++-+++.++... ........++.+.+ ++.. .+..|.|+.||..+ -+..
T Consensus 93 Vrm---Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v 166 (391)
T KOG2110|consen 93 VRM---NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPV 166 (391)
T ss_pred EEE---ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceee
Confidence 322 34555555433 4999999999998877654 23333333433333 3322 23468899999887 6666
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEE-Ec-CCCCEEEEeecCCceeecCcccccCCCe-EEEEeeCCeEEEEe
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVA-LD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~-~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d 714 (829)
-....+.......++..++..+..++..|+|.. +. .+|+.++++..+....+.-.+.+..+.. +-+.+..++|+.|.
T Consensus 167 ~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 167 NTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred eEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 667777777788889999999999999998765 55 8999999988765322221222333444 44555667788777
Q ss_pred CCC
Q 003331 715 QES 717 (829)
Q Consensus 715 ~~t 717 (829)
.++
T Consensus 247 L~~ 249 (391)
T KOG2110|consen 247 LEK 249 (391)
T ss_pred ecc
Confidence 654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-06 Score=91.50 Aligned_cols=228 Identities=11% Similarity=0.072 Sum_probs=155.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~ 558 (829)
..++.+|++.+.+|.|..|+..+-...-. ....+. ....+....+.+.+|+.++.+.+|...+|+ ++-+|..+-
T Consensus 22 d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~--~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~ 99 (933)
T KOG1274|consen 22 DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE--LVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPI 99 (933)
T ss_pred cCCCCEEEEecCCCceEEeecCCcccCCchhhccCc--eeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccc
Confidence 44566888888899999998655421111 111111 123444455689999999999999877765 344555432
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
. ..++..++..+.+|+.|-.|.+++..+......+..+........+++++..|.+.+.+|.|++|++++ |....
T Consensus 100 r---~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~--~~~~~ 174 (933)
T KOG1274|consen 100 R---DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD--GILSK 174 (933)
T ss_pred e---EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc--chhhh
Confidence 2 234566778899999999999999988877777766666666777888888999999999999999998 65544
Q ss_pred eeccC--------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccC-CCeEEEEeeCC
Q 003331 639 LHELE--------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL-PSQVLICSRNG 708 (829)
Q Consensus 639 ~~~~~--------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~-~~~i~~~t~~g 708 (829)
....- ..+...+...++++.+.+...++.|.+|+ .+....+.+..........++.... +..|-.++.+|
T Consensus 175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 33221 12224456777889999988999999999 6666666665432111111112222 44677888999
Q ss_pred eEEEEeCCC
Q 003331 709 SIYSFEQES 717 (829)
Q Consensus 709 ~l~~~d~~t 717 (829)
.|..||.++
T Consensus 255 ~I~vWnv~t 263 (933)
T KOG1274|consen 255 QILVWNVDT 263 (933)
T ss_pred cEEEEeccc
Confidence 999999885
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=91.14 Aligned_cols=235 Identities=11% Similarity=-0.003 Sum_probs=151.4
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
..+...++|..|++|++.|.+-.|+..+-...-..+.++....+..+..++..++.|+.+|.|..|++.-..++-....+
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 34567788899999999999888884221111112335566666667777788888999999999987643332222222
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
...+....+++++.....++.||.+.+||... .+..-....+.-..-+....+..+.|+.++.|..|..+| ++|..+
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~--~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM--PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccC--CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchh
Confidence 23334455565567778888899999999665 333222222333334555666788999999999999999 899887
Q ss_pred EEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccc-ccccccccccccccCCCcEEEE
Q 003331 679 WRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 679 w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
-+...... +....+ ....+.+..++.|..+..||.++-+.+..+..+.....+. +.. ...+++..
T Consensus 258 ~tlh~HKntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP-----------~~~~lfts 324 (464)
T KOG0284|consen 258 ATLHGHKNTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP-----------LNESLFTS 324 (464)
T ss_pred hhhhhccceEEEEEE--cCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc-----------ccccceee
Confidence 55443332 222211 1123568888999999999998766665555333222211 111 12678888
Q ss_pred EccCCcEEEEEee
Q 003331 757 CTSSGSIHILRVN 769 (829)
Q Consensus 757 ~~~~G~l~~~d~~ 769 (829)
|..||.|+.|...
T Consensus 325 gg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 325 GGSDGSVVHWVVG 337 (464)
T ss_pred ccCCCceEEEecc
Confidence 9999999998765
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.3e-06 Score=83.10 Aligned_cols=225 Identities=13% Similarity=0.059 Sum_probs=148.8
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
..+..|..|..+.++|..+++++-.+..+..-.....+......+..++.|-.++.|...+-...-....+.........
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 35778888888999999999998888766555555566666677888999999999987655443333333333344445
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
...+++++.++.+|.....|..+ |..+-..... .-.+.+..+.+++-.+..|+.+|.+-.|| .++..+-+++...
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght 389 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT 389 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC
Confidence 55678888888888766677777 7766655443 22346677777777777788899999999 7777665655432
Q ss_pred -ceeecCcccccCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEccCCc
Q 003331 686 -PIFAGPCTSFALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
++-. +.+..+|. +.+++.|+.|.+||.+.-+..-++...... ..+..+|. ++.++.+++.+=.
T Consensus 390 ~~vk~---i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-----------SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 390 GPVKA---ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-----------SGTYLGIAGSDLQ 455 (506)
T ss_pred CceeE---EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-----------CCCeEEeecceeE
Confidence 2222 23444554 556677888999998876644444444431 11222222 3778888877766
Q ss_pred EEEEEee
Q 003331 763 IHILRVN 769 (829)
Q Consensus 763 l~~~d~~ 769 (829)
||+++..
T Consensus 456 Vy~~~k~ 462 (506)
T KOG0289|consen 456 VYICKKK 462 (506)
T ss_pred EEEEecc
Confidence 7777654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-06 Score=92.77 Aligned_cols=235 Identities=11% Similarity=0.120 Sum_probs=155.4
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
..+.+..-.|.++-..|.|..||-.=|.++-+|.-++...-...+.+..-.++.|++|..|..|+.++.+++.+...+-.
T Consensus 15 lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlD 94 (1202)
T KOG0292|consen 15 LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD 94 (1202)
T ss_pred eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccc
Confidence 44555555677777789999999988999888877665555566777777777888899999999999999887766655
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEe
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRC 681 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~ 681 (829)
...+..+...--.|+.++.|-+|.+||-.+ ++.+-....+........+.+.++.|..++-|.+|.+||-.|-..-..
T Consensus 95 YVRt~~FHheyPWIlSASDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~ 172 (1202)
T KOG0292|consen 95 YVRTVFFHHEYPWILSASDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNK 172 (1202)
T ss_pred eeEEeeccCCCceEEEccCCCeEEEEeccC--CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCC
Confidence 555566655445677788899999999887 777666655544445555667788999999999999999434221111
Q ss_pred ecC------------CceeecC--ccc---cc------------CCCeEEEEeeCCeEEEEeCCCCcEEEEEec----CC
Q 003331 682 RTG------------GPIFAGP--CTS---FA------------LPSQVLICSRNGSIYSFEQESGNLLWEYSV----GD 728 (829)
Q Consensus 682 ~~~------------~~~~~~~--~~~---~~------------~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~----~~ 728 (829)
..+ ...+..+ ++. .. .--.|..|+.|..|.+|.- +....|+.+. -+
T Consensus 173 ~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm-netKaWEvDtcrgH~n 251 (1202)
T KOG0292|consen 173 APGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM-NETKAWEVDTCRGHYN 251 (1202)
T ss_pred CCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe-ccccceeehhhhcccC
Confidence 111 0111110 000 00 0013455566666777763 3445687653 22
Q ss_pred ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 729 PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.+..+. +..+.|...+.|+.|.+||....
T Consensus 252 nVssvlfh------------p~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 252 NVSSVLFH------------PHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred CcceEEec------------CccceeEecCCCccEEEEecccc
Confidence 33222222 22688999999999999999865
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=94.46 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=135.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
.+++|...+.|.++..|++...+.+-.|.. ..++.++.+.+ |+.+++.|+-|+.+..|+..+.++.--++.. .+..+
T Consensus 379 Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITA 456 (712)
T KOG0283|consen 379 KNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITA 456 (712)
T ss_pred cCCeeEeccccccEEeecCCCcceeeEEec-CCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhhee
Confidence 578899999999999999998888876654 44556677765 5578999999999999999888876545665 45566
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------CCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
.++.++++..++|+.+|..+.|+...-++.-..+. +..+.+.-+...+.+.|+|.+.|..|.+||..+ -
T Consensus 457 vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~ 534 (712)
T KOG0283|consen 457 VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--K 534 (712)
T ss_pred EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--h
Confidence 77888899999999999999999877666543332 122333333333346899999999999999855 3
Q ss_pred eEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 635 HTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 635 ~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+++-+++.. ........+..++..|++++.|..||.|+
T Consensus 535 ~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 535 DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 344444321 12223445666899999999999999998
|
|
| >PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=75.94 Aligned_cols=59 Identities=25% Similarity=0.398 Sum_probs=52.0
Q ss_pred HHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHH
Q 003331 292 QVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 292 ~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l 350 (829)
+.++++|+++++. .+++++++||++|+|||.++++...+ .++...++++||+..|+++|
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4678889999985 67999999999999999999998765 47888999999999999875
|
The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A .... |
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2e-06 Score=86.41 Aligned_cols=145 Identities=17% Similarity=0.174 Sum_probs=104.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcC---CCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL---TGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~---tG~~~w~~~~~~~~ 560 (829)
-.+.|..|+.|.+|..||+.+|++.-.+..++.-+.+..+.+ ....+..|++|+.+...|.+ .-...|++...-+.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk 334 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK 334 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEE
Confidence 356788899999999999999999887765554444555544 34578899999999999977 44467887654332
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccC
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~ 631 (829)
...--. ....+++++.||.||-+|+++ |+++|..+.+...++..++.. ..+.+..++.++.+-.|+...
T Consensus 335 v~w~~~--se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 335 VAWDPH--SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEecCC--CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 221111 346788899999999999875 699999998877666665543 235566677788888887664
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.1e-06 Score=91.76 Aligned_cols=236 Identities=11% Similarity=0.080 Sum_probs=154.5
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEE
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVY 594 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w 594 (829)
....++.++|..|++.+.|+.|..|+..+- +.--+....+....+... ..+.+.+++.++.+..|...+++ ++-
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~ 93 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILA 93 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCccceee
Confidence 446788888889999999999999985443 111122212222222222 33678899999999888876654 344
Q ss_pred eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C
Q 003331 595 KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S 673 (829)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~ 673 (829)
++.. .....+++.++..+.+|+.|-.|-+++..+ +.................+.+.++.+.+.+.+|.|++|+ +
T Consensus 94 Rftl---p~r~~~v~g~g~~iaagsdD~~vK~~~~~D--~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 94 RFTL---PIRDLAVSGSGKMIAAGSDDTAVKLLNLDD--SSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeec---cceEEEEecCCcEEEeecCceeEEEEeccc--cchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 4433 233455676677889999998899999887 444444433333345667778889999999999999999 8
Q ss_pred CCCEEEEeecC----CceeecCccc---ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003331 674 SGSIIWRCRTG----GPIFAGPCTS---FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 674 ~g~~~w~~~~~----~~~~~~~~~~---~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+|.+......- ..+.+.++.. .-.++.+.+...++.|..|+.++......+...... +.+.+ -.
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s--s~~~~-------~~ 239 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS--SKFSD-------LQ 239 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc--cceEE-------EE
Confidence 88776544321 1111222211 123577888888999999999988887666533221 11111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeec
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..+.|.+|++++.+|.|.+||.++
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEeccc
Confidence 234489999999999999999985
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-07 Score=101.91 Aligned_cols=177 Identities=24% Similarity=0.288 Sum_probs=118.4
Q ss_pred ccccCCcEEEEecCCCC----CCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEc
Q 003331 83 GLPISNCDIVLVESDTV----KPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRI 158 (829)
Q Consensus 83 G~p~~~~~~~i~d~~~~----~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~ 158 (829)
|.-.+.+++.|+.++.. .++.||||+.+..-+.+|++... + +..+.++..-... ...+..|-||||+|+..
T Consensus 1156 G~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~~d---~-~~~~~fn~rl~~g-~~~~~sy~RTG~LGFl~ 1230 (1363)
T KOG3628|consen 1156 GKLPVYTDIAIVNPETKGPCRDGELGEIWVNSAHNASCSFTIGD---E-LRSNHFNARLSSG-DLLGKSYARTGDLGFLR 1230 (1363)
T ss_pred CcccccceeEEeCCccccccccCCcceEEeccccccccccccCc---h-hhhhhhhhhcccc-ccccccceeeeeeeeee
Confidence 66678899999998873 45679999999988888876411 1 2222221110000 11256899999999863
Q ss_pred ------cC----CcEEEEeecCCcEEECCeeeChHHHHHHHhC-CCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHH
Q 003331 159 ------QS----GDLVFLGRKDRTIKINGQRMALEEIEHTLRG-HPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI 227 (829)
Q Consensus 159 ------~~----G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~-~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~ 227 (829)
.+ ..||++|-.++.+.++|.|.+|.+||+.+.. ||.|..|+|+-... .++..++...+ +....
T Consensus 1231 ~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~g-----lvVvviE~~gq-~~~~~ 1304 (1363)
T KOG3628|consen 1231 RTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATG-----LVVVVIECHGQ-QELAD 1304 (1363)
T ss_pred eeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEeeCC-----eEEEEEEecCc-hhHhh
Confidence 22 3489999999999999999999999998876 99999999986654 45556666552 22222
Q ss_pred HHHHHHHHHHhcCCCCCcCCeEEEeCc--ccCCCCCCcchhhhcccc
Q 003331 228 FLSSIKSWVSSKLPLAMIPNRFVFMDS--LPMTSSGKVDYASLSAST 272 (829)
Q Consensus 228 ~~~~l~~~l~~~l~~~~~p~~~~~~~~--lP~t~~GKi~r~~l~~~~ 272 (829)
+...|...+-+. .+.+-+.+.+++. +|+++.|.-+|..+++.+
T Consensus 1305 LvPlIv~~vL~e--H~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w 1349 (1363)
T KOG3628|consen 1305 LVPLIVNVVLEE--HYIILDVVAFVDKGVFPRNSRGEKQRAHILDSW 1349 (1363)
T ss_pred hhHHHHHHHHhh--cceEEEEEEEecCCccccCCchhhHHHHHHHHH
Confidence 223333222221 2345555556654 999999988888877654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00012 Score=77.54 Aligned_cols=267 Identities=12% Similarity=0.102 Sum_probs=145.2
Q ss_pred EEEEec-CCCcEEEEECCC-Cc--EEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcC-CCcEE--EEEecCCe
Q 003331 488 YLFVGS-HSHKFICADAKR-SS--VLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDIY--WTFQTCGE 559 (829)
Q Consensus 488 ~l~igs-~~g~l~~~d~~t-g~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~-tG~~~--w~~~~~~~ 559 (829)
++|++. .++.|..||..+ |+ .+-.+...+. .....++++++.+|+++. ++.|+.|+.. +|++. -.....+.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~-~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQ-VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCC-CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 467774 578899999864 54 3333333222 234567888889999865 6778888765 56542 12222222
Q ss_pred eeeeeeeecCCCEEEEecc-CCeEEEEEcCC-Ce---EEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YR---CVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~ 633 (829)
.+...++++++.+|++++ ++.+..||..+ |. .+......... ....++++++.+|++.. ++.|..||+++ .
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~-~ 158 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSD-D 158 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECC-C
Confidence 233455667788888765 67888898753 32 22221111111 22345666778888775 47899999875 2
Q ss_pred ceEE------EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-C--CCCEEEEeecCC--ceeecC----ccccc-
Q 003331 634 FHTL------WLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIWRCRTGG--PIFAGP----CTSFA- 696 (829)
Q Consensus 634 g~~~------w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~--~g~~~w~~~~~~--~~~~~~----~~~~~- 696 (829)
|... .....+ .......+.+++..+|+.+. ++.|.+|+ . +|+......... .....+ .+...
T Consensus 159 g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 111111 11234566778889999876 78898888 4 454422211110 000000 01111
Q ss_pred CCCeEEEEee-CCeEEEEeCCC--CcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003331 697 LPSQVLICSR-NGSIYSFEQES--GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 697 ~~~~i~~~t~-~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
.+..+|++.. ++.|..|+.++ +.+...-..... ..|. . .....++.++|++.. ++.|.+|+.+
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~---~-----~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPR---G-----FNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCC---c-----eEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2446888754 57788887643 232221111111 0010 0 011234788888775 7788888764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.6e-06 Score=81.11 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=112.6
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-ccc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-FGS 605 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-~~~ 605 (829)
..+.++..+|.+.+||..||+.+-.+..........-+. +....|+.++.||.|.+||+.+....-++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 458888889999999999999888776544322222222 24577899999999999999875543333222211 122
Q ss_pred ceeec--CCCEEEEEec----CCeEEEEEccCCCceE-EEe-eccCCcceeeeeeeec-CCEEEEEeeCCeEEEEcCCCC
Q 003331 606 PAIDE--VHDVLYVAST----SGRLTAISVKALPFHT-LWL-HELEVPAFASLCITSA-NRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 606 ~~~~~--~~~~l~v~t~----~g~l~~~~~~~~~g~~-~w~-~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d~~g~ 676 (829)
.+++. +++.+..|+. +-.|+.||... -+. +-. .+.+........+.+. .+.+..|+.||-+.+||.++.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~--~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRS--EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEecc--ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 23333 3445555553 34688888775 111 111 1122223344455554 567888999999999992221
Q ss_pred -----EEEEeecCCceeecCcccccCCC--eEEEEeeCCeEEEEeCCCCcEE
Q 003331 677 -----IIWRCRTGGPIFAGPCTSFALPS--QVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 677 -----~~w~~~~~~~~~~~~~~~~~~~~--~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
++..+..+..+... ....++ .||+-|+..+.+.|+.+.|...
T Consensus 199 ~EeDaL~~viN~~sSI~~i---gw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLI---GWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred cchhhHHHhhcccceeeee---eeecCCcceEEEEEccCceeEEEccCCChh
Confidence 12222222222222 122233 7999999999999999888754
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=85.57 Aligned_cols=257 Identities=12% Similarity=0.122 Sum_probs=148.2
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAID 609 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~ 609 (829)
.++.|+.||.|..||+.+-.+.|++..+.......++.. +.+++.+.|..|..|... |.++.++...+.....-...
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc-CCcceeeecccccccccccc
Confidence 467888999999999999999999998875554445543 445555567788777644 33444443332221111111
Q ss_pred cCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCEEEEeecCCc-
Q 003331 610 EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SSGSIIWRCRTGGP- 686 (829)
Q Consensus 610 ~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~- 686 (829)
.+.+++ |..-.|-+||... -.++.++..+.+...+..+.+... .+..+..+++|+.|| .++.++.+....-.
T Consensus 158 --~~~~Fa-TcGe~i~IWD~~R--~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT 232 (433)
T KOG0268|consen 158 --KNSVFA-TCGEQIDIWDEQR--DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT 232 (433)
T ss_pred --cccccc-ccCceeeeccccc--CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc
Confidence 122333 3334578888764 345555555555445555544444 444555899999999 88887765543211
Q ss_pred --eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE-EEEEe-cCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 687 --IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL-LWEYS-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 687 --~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~-~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
+.-.| ..-+..+++.|..+|.+|...-+. +-.+. ..+.+ .+ ....+.|..+..|+.|.+
T Consensus 233 N~IswnP-----eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV-----~d-------VdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 233 NTICWNP-----EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAV-----MD-------VDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cceecCc-----cccceeeccccccceehhhhhhcccchhhcccceeE-----EE-------eccCCCcchhccccccce
Confidence 11111 122455678899999999654221 11111 11111 11 112344888999999999
Q ss_pred EEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeCCeEEEEecc
Q 003331 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 763 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
|.+|..+.+.+....++.- . -.++.-.. .+..+|+.|+.|+.+..|..+
T Consensus 296 IRIf~~~~~~SRdiYhtkR-M----------q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKR-M----------QHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEeecCCCcchhhhhHhh-h----------heeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999988764433222110 0 01111111 134688889999999999764
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-05 Score=72.20 Aligned_cols=226 Identities=14% Similarity=0.145 Sum_probs=128.2
Q ss_pred CeEEEEecCCCcEEEEECCC---------Cc-EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC------CCc
Q 003331 486 DIYLFVGSHSHKFICADAKR---------SS-VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL------TGD 549 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---------g~-~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~------tG~ 549 (829)
..++++|+..|.|..+.+++ |+ .+-.+..++.......+.++ .+.++. ||.||.|.-. .-+
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEWNEEEESLATK 98 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeeehhhhhhccch
Confidence 45688888888887776543 11 11222333333334445433 455554 7999988632 234
Q ss_pred EEEEEecCCee-------eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 550 IYWTFQTCGEV-------KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 550 ~~w~~~~~~~~-------~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
.+|+...+-.. ..+..+++..+-|+++..|+.+|++|.++|++...+..+....-+.+.....+.|+.|+.||
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDG 178 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDG 178 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCc
Confidence 56765433211 12233455667777777899999999999999998887766655555545567899999999
Q ss_pred eEEEEEccCCCceEEEeeccCC------cceee--eeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcc
Q 003331 623 RLTAISVKALPFHTLWLHELEV------PAFAS--LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCT 693 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~------~~~~s--~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~ 693 (829)
.+..||.++ ++.....+... |.... .++..+.+-+.+|. .-.+..|+ ...+..-.++...++.-.
T Consensus 179 tvRvWd~kt--~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v--- 252 (325)
T KOG0649|consen 179 TVRVWDTKT--QKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLV--- 252 (325)
T ss_pred cEEEEeccc--cceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEe---
Confidence 999999888 77655543321 11122 33443444444443 22344444 332222222222222111
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 694 SFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
.+ .++.|.++.....+..|.. +|.+.-
T Consensus 253 ~F-~~d~vl~~G~g~~v~~~~l-~Gvl~a 279 (325)
T KOG0649|consen 253 DF-VDDCVLIGGEGNHVQSYTL-NGVLQA 279 (325)
T ss_pred ee-ecceEEEeccccceeeeee-ccEEEE
Confidence 12 2445666665556766653 355543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00028 Score=66.81 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=151.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE--EeeccCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~ 600 (829)
|..++.++.|..|..|+...+.- |+..+ +....-+.+..+.+.++.++|.|..+..|....++.. -.+..+.
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHE 105 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS-WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHE 105 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc-EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccc
Confidence 34577888899999999765443 44321 2222334456667788999999999999987766543 3333344
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCce---EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH---TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~---~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
+-.-+...+.+++.|...+.+..+.+|..+. +. ..-..+.+....-.....+..+.++.+++|.+|..|. .++.
T Consensus 106 nEVK~Vaws~sG~~LATCSRDKSVWiWe~de--ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd 183 (312)
T KOG0645|consen 106 NEVKCVAWSASGNYLATCSRDKSVWIWEIDE--DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD 183 (312)
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEEecC--CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC
Confidence 4455666777788899999999999998773 22 2222222222222334455678899999999999988 4222
Q ss_pred EEEEe--ecCC---ceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003331 677 IIWRC--RTGG---PIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 677 ~~w~~--~~~~---~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
-|.. ...+ .+++.. +.. +.++..++.|+.+..|-..++-. ......++..+..
T Consensus 184 -dW~c~~tl~g~~~TVW~~~---F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~-------------- 242 (312)
T KOG0645|consen 184 -DWECVQTLDGHENTVWSLA---FDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD-------------- 242 (312)
T ss_pred -CeeEEEEecCccceEEEEE---ecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec--------------
Confidence 1322 2221 223222 333 33677777888777776432211 1111122221211
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccce---EECCEEEEeeeCCeEEEEecc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPV---MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~---~~~~~l~vg~~~g~l~~~d~~ 822 (829)
++.|+.+..|+.|.+|....+.... ..+++.+. .-++.-+.+.. ...+.|..|+.||.+..|.++
T Consensus 243 ~~~IaS~ggD~~i~lf~~s~~~d~p-------~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 NGVIASGGGDDAIRLFKESDSPDEP-------SWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEeccCCCEEEEEEecCCCCCc-------hHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 5678888889989888665331110 01111110 11111111111 235789999999999988764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.9e-06 Score=82.17 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=160.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcE----EEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec--CC
Q 003331 486 DIYLFVGSHSHKFICADAKRSSV----LWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CG 558 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~----~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~ 558 (829)
...|.+|+..|.|-.||..+.+. ...+..+...+++..+.+ +...||..++||.|.+-|.+++...-.+.. ..
T Consensus 200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~ 279 (498)
T KOG4328|consen 200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDN 279 (498)
T ss_pred ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccc
Confidence 36788899999999999853221 112333333344445544 335799999999999999887754222222 33
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
...+..-+..++..++++++-|.+..||..+++- .|....+..-+.+..+.+-. ..+..++.+++..+||.....++.
T Consensus 280 ~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 280 IWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 3344444555678888988888899999887654 66665554444444443322 456667789999999977533332
Q ss_pred ---EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C---C-----CCEEEEeecCCceeecCccc-cc-CCCeEE
Q 003331 637 ---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S---S-----GSIIWRCRTGGPIFAGPCTS-FA-LPSQVL 702 (829)
Q Consensus 637 ---~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~---~-----g~~~w~~~~~~~~~~~~~~~-~~-~~~~i~ 702 (829)
+..+. +.....+..+++.++.++..+.|..|.+|| . . +.+......+. .-+++-. .+ ....|+
T Consensus 360 sp~lst~~-HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R--wlT~fKA~W~P~~~li~ 436 (498)
T KOG4328|consen 360 SPFLSTLP-HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR--WLTPFKAAWDPDYNLIV 436 (498)
T ss_pred Ccceeccc-ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc--cccchhheeCCCccEEE
Confidence 22222 233346677888899988888899999988 3 1 11111111111 1111100 11 245788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-EEEEEccCCcEEEEEe
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRV 768 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~ 768 (829)
+|.+-..|-.||...|+.+-++..+..... +.+. .+.+.+. ++.-++..|.||+|--
T Consensus 437 vg~~~r~IDv~~~~~~q~v~el~~P~~~tI-~~vn--------~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 437 VGRYPRPIDVFDGNGGQMVCELHDPESSTI-PSVN--------EFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred EeccCcceeEEcCCCCEEeeeccCcccccc-ccce--------eecccccceeccCCccceEEEEec
Confidence 888888899999888887655432222111 1111 1122244 5555666788888743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.4e-05 Score=72.54 Aligned_cols=188 Identities=15% Similarity=0.164 Sum_probs=107.5
Q ss_pred CeEEEEecCCCcEEEEECCC------CcEEEEEEcCCce-------eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 486 DIYLFVGSHSHKFICADAKR------SSVLWEIKLEGRI-------ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t------g~~~w~~~~~~~~-------~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
+..+..+. ||.|+.|.-.. -|.+|+...+-.. ..+..+.+..+-++.+..|+.+|++|+++|++..
T Consensus 72 d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r 150 (325)
T KOG0649|consen 72 DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR 150 (325)
T ss_pred hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE
Confidence 44555554 48888886432 3556775544221 2233444444455555579999999999999999
Q ss_pred EEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc------cccc--ceeecCCCEEEEEecCCeE
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGS--PAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~--~~~~~~~~~l~v~t~~g~l 624 (829)
.+..+....-+.+.-...+.|+.|+.||.++.||.+|++.+-.+..... -++. .+++.+.+.+++|.. -.+
T Consensus 151 ~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~l 229 (325)
T KOG0649|consen 151 EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKL 229 (325)
T ss_pred EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-Cce
Confidence 9988776665555545678899999999999999999998776543211 1111 233333455555543 235
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWR 680 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~ 680 (829)
..|++.. -+..-.+....+. -.+...++.+.++.....+..|.-+|.+.-.
T Consensus 230 slwhLrs--se~t~vfpipa~v---~~v~F~~d~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 230 SLWHLRS--SESTCVFPIPARV---HLVDFVDDCVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred eEEeccC--CCceEEEecccce---eEeeeecceEEEeccccceeeeeeccEEEEe
Confidence 5565554 2222222221111 0122245566666544445444444544333
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-05 Score=75.22 Aligned_cols=277 Identities=14% Similarity=0.077 Sum_probs=154.3
Q ss_pred cccccceEEeeCCCeEEEEecC-------CCcEEEEECCCCcEE---EEEEcCCceeeceEEe-eCCcEEEEEEeCCEEE
Q 003331 473 CVDASPLVVLKDSDIYLFVGSH-------SHKFICADAKRSSVL---WEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIY 541 (829)
Q Consensus 473 ~~~~sp~v~~~d~~~~l~igs~-------~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~ 541 (829)
.+..||.+ .++|.+++. +|+|+.++...++-+ -.+...+... ..+.+ ...+.+++++.||.|.
T Consensus 13 svqfSPf~-----~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~Lf-dV~Wse~~e~~~~~a~GDGSLr 86 (311)
T KOG0277|consen 13 SVQFSPFV-----ENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLF-DVAWSENHENQVIAASGDGSLR 86 (311)
T ss_pred eeEecccc-----cchhheeehhhcccccCceEEEEecCCCCCeEEEEeeeccccee-EeeecCCCcceEEEEecCceEE
Confidence 34556665 445554442 468888887543322 2344444332 23333 2345788888999999
Q ss_pred EEEcCC-CcEEEEEecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecC-CCEEEEE
Q 003331 542 FLDYLT-GDIYWTFQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEV-HDVLYVA 618 (829)
Q Consensus 542 ~~d~~t-G~~~w~~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~-~~~l~v~ 618 (829)
.||..- -+++..++-+ .++.+.---...+..++++|+|++|..||+.-++-+.++..+...+-.....+. .+.+..+
T Consensus 87 l~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 87 LFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred EeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 999321 2233333222 233322111113456778899999999999888888877665544433333332 3455566
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeee-ecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCC-ceeecCccc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCIT-SANRHVICCLVDGHVVALD-SSG-SIIWRCRTGG-PIFAGPCTS 694 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~-~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~-~~~~~~~~~ 694 (829)
+.|+.+..||.+. +|+..- +..+.....+.... .+...++.|..|+.|++|| .+- .++......+ .+....+.+
T Consensus 167 Sgd~~l~lwdvr~-~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 167 SGDGTLRLWDVRS-PGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred cCCceEEEEEecC-CCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 7789999999875 366554 33333111222222 2456778888999999999 532 3444442222 111111111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
. ....+..+++|=++..||...+. .+-+++.+..+....-. .....+.++....|+.+++|++
T Consensus 245 h-~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw----------s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 H-HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW----------SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred c-hhhHhhhccccceEEecccccchhhhhhhhccceEEecccc----------ccccCceeeecccccceeeecc
Confidence 1 12245567788889999877432 22233333322211100 0113788888899999999974
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00016 Score=72.76 Aligned_cols=214 Identities=14% Similarity=0.083 Sum_probs=123.8
Q ss_pred CeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--C--Cee
Q 003331 486 DIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--C--GEV 560 (829)
Q Consensus 486 ~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~--~~~ 560 (829)
++.+|+.. ..+.|+.+|+.+++.. .+..+.. ....+...++.+|++... .+..+|..+|+....... . ...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~--~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPGP--NGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSSE--EEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCCC--ceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCcccC
Confidence 55555555 5788999999887654 3444542 245555345788888754 466779999977654443 1 223
Q ss_pred eeeeeeecCCCEEEEeccC---------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEcc
Q 003331 561 KCQPVVDAPRQLIWCGSHD---------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVK 630 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~---------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~ 630 (829)
...-+..+.+|.+|+++.. |.++.++.. ++....... -.....++++.+++.+|+. +..+.|+.++++
T Consensus 87 ~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 87 RPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp EEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccceeEEEecc
Confidence 3333333456779997542 569999988 665443321 2223456677777888865 557889999987
Q ss_pred CCCce----EEEeeccCCcc-eeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003331 631 ALPFH----TLWLHELEVPA-FASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 631 ~~~g~----~~w~~~~~~~~-~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
...+. ..+ ....... .........++++|++.. .+.|.++|.+|+++-.+..+....+..+......+.||+.
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 165 ADGGELSNRRVF-IDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTTCCEEEEEEE-EE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ccccceeeeeeE-EEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 53331 112 1222211 122223335678898865 6889999966998877776633222221111234567776
Q ss_pred ee
Q 003331 705 SR 706 (829)
Q Consensus 705 t~ 706 (829)
+.
T Consensus 244 ta 245 (246)
T PF08450_consen 244 TA 245 (246)
T ss_dssp EB
T ss_pred eC
Confidence 53
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-05 Score=80.36 Aligned_cols=234 Identities=14% Similarity=0.148 Sum_probs=139.4
Q ss_pred ceEEeeCCcEEE-EEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 521 SAAVLADFSQVV-VGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 521 ~~~~~~~~~~v~-vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.+-+++||.+++ +|.|.-.|.+||+.+-.++..-.+...+....+++++ ...++. ..|..| -+..+-|.. .....
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L-~~DR~I-efHak~G~h-y~~RI 132 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFL-QNDRTI-EFHAKYGRH-YRTRI 132 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEe-ecCcee-eehhhcCee-eeeec
Confidence 455778888766 5778889999999888887766666655544444433 333332 233322 222233321 11111
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+. .-..+++..-.--+|++.....||.+|++. |..+--+.........+.+....+.+.+|+.+|.+-+|| .+...
T Consensus 133 P~-~GRDm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 133 PK-FGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred Cc-CCccccccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 10 011222222223466666677799999998 887766666555556666777789999999999999999 66665
Q ss_pred EEEeecCCceeecC---------cccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc--ccccccccccccc
Q 003331 678 IWRCRTGGPIFAGP---------CTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGDPITA--SAYIDEHLQLKLE 745 (829)
Q Consensus 678 ~w~~~~~~~~~~~~---------~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~ 745 (829)
.-.......+-+.| .+.+..+| .+-+|+.+|.++.||..+.+++...++...... ..+.+.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~------- 282 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT------- 282 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-------
Confidence 55544333221111 12233334 578999999999999999888766554433211 111111
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecC
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++...+......+.+||..+|
T Consensus 283 ----~~q~~v~S~Dk~~~kiWd~~~G 304 (703)
T KOG2321|consen 283 ----DQQNKVVSMDKRILKIWDECTG 304 (703)
T ss_pred ----CCCceEEecchHHhhhcccccC
Confidence 1334445555566888998877
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00044 Score=69.62 Aligned_cols=239 Identities=15% Similarity=0.133 Sum_probs=148.9
Q ss_pred eCCCeEEEEec----------CCCcEEEEECCCCcEEEEEEcCCc--e-----eeceEEeeCCcEEEEEEe--CCEEEEE
Q 003331 483 KDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEGR--I-----ECSAAVLADFSQVVVGCY--KGKIYFL 543 (829)
Q Consensus 483 ~d~~~~l~igs----------~~g~l~~~d~~tg~~~w~~~~~~~--~-----~~~~~~~~~~~~v~vg~~--dg~l~~~ 543 (829)
+.++..+|+.+ ....|..||.+|-++.++..++.. . .....++.+++.+|+-.. -..|-.+
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 34566777643 224688999999999999887753 2 123467788888888643 4579999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-CCeEEEeecc-----CCcccccceeecCCCEEEE
Q 003331 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPC-----GGSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~-----~~~~~~~~~~~~~~~~l~v 617 (829)
|++.++++-.+.+++-...-|. .+..++.-+.||.+..+.+. .|+...+... ...++..+.+...++.+|+
T Consensus 124 Dl~~~kvv~ei~~PGC~~iyP~---~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F 200 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWLIYPS---GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYF 200 (342)
T ss_dssp ETTTTEEEEEEEGTSEEEEEEE---ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEE
T ss_pred ECCCCceeeeecCCCEEEEEec---CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEE
Confidence 9999999999888775443332 23456666778888777665 6777633211 2345566666666778888
Q ss_pred EecCCeEEEEEccCCCceE--EEeeccC-----C---cceeeeeeeecCCEEEEEeeCC----------eEEEEc-CCCC
Q 003331 618 ASTSGRLTAISVKALPFHT--LWLHELE-----V---PAFASLCITSANRHVICCLVDG----------HVVALD-SSGS 676 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~--~w~~~~~-----~---~~~~s~~~~~~~~~l~~~~~~g----------~i~~~d-~~g~ 676 (829)
.|.+|.++..+.....-+. .|..-.. . ....-.++....+++|+--..| .|.++| .+++
T Consensus 201 ~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 201 VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 9999999999987532222 2322110 0 0112234555677888764322 478888 8888
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEe
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~ 725 (829)
.+-+.+...++.+.. +..+..-.+|..+ .++.|+.+|..||+++.+.+
T Consensus 281 rv~Ri~l~~~~~Si~-Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 281 RVARIPLEHPIDSIA-VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEEEEEEESEEE-EESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEeCCCccceEE-EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 887777665554433 2233333566554 46889999999999987765
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=83.12 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=151.2
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeecc
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPC 598 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~ 598 (829)
...++.+||..++++. +..++.||..+|..+.+...+.......+++.++..+..|+.|..+..|+.+- |.+.+. .
T Consensus 16 ~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS--H 92 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS--H 92 (1081)
T ss_pred heeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec--c
Confidence 3567888998888876 66799999999999998887777666667777777888889999999998654 333322 2
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSII 678 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~ 678 (829)
+. .+..+.+.+-...+...+.+ ..-.|.++. +-+-++... ....+.....++.++.+|-.+|+|..-|.+|+..
T Consensus 93 ~D-~IQCMsFNP~~h~LasCsLs-dFglWS~~q---K~V~K~kss-~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 93 ND-AIQCMSFNPITHQLASCSLS-DFGLWSPEQ---KSVSKHKSS-SRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred CC-eeeEeecCchHHHhhhcchh-hccccChhh---hhHHhhhhh-eeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 11 11111111111222222211 122233222 101111110 1112334445677888888899998888777765
Q ss_pred EEeec----CCceeecCcccc---cCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCccccccccccccccccccccCC
Q 003331 679 WRCRT----GGPIFAGPCTSF---ALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 679 w~~~~----~~~~~~~~~~~~---~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
-..+. ..++++..+.+. ..++.+-+...+.++..+.. +|+.+-+-. .+-..... +...+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci------------sYf~N 233 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI------------SYFTN 233 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh------------eeccC
Confidence 55543 234554433322 23455666677777776664 466654221 11111111 12334
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceE-ECCEEEEeeeCCeEEEEeccccc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+.++.+|..++.+.+|..+.= .+.+... ..-+++-.+. .+..+.+||.||.+-|||+...+
T Consensus 234 GEy~LiGGsdk~L~~fTR~Gv--------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 234 GEYILLGGSDKQLSLFTRDGV--------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred CcEEEEccCCCceEEEeecCe--------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 889999999999998854421 1111110 0011111111 24578889999999999986544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-05 Score=79.17 Aligned_cols=268 Identities=13% Similarity=0.120 Sum_probs=158.5
Q ss_pred eeCCCeEEE-EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 482 LKDSDIYLF-VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 482 ~~d~~~~l~-igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
+++++.+++ .|+.--.|.+||...-.+.....+...++.-.++++|-..++.-..|..|-+.. .-|.- .+...+..-
T Consensus 59 ~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~h-y~~RIP~~G 136 (703)
T KOG2321|consen 59 VSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGRH-YRTRIPKFG 136 (703)
T ss_pred ecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCee-eeeecCcCC
Confidence 334555555 466677899999987766666555555444445556655555555566554433 33432 112222111
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.. ..+....-.+|++.....||.++++.|..+-.+.........+-+...++.|.+||.+|.+-.||+.+ ....-..
T Consensus 137 RD-m~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~--ksrv~~l 213 (703)
T KOG2321|consen 137 RD-MKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD--KSRVGTL 213 (703)
T ss_pred cc-ccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh--hhhheee
Confidence 11 11111122366666666899999999999888877655555556666678999999999999999886 3333333
Q ss_pred ccCCc-----------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccCCCeEEEEee
Q 003331 641 ELEVP-----------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 641 ~~~~~-----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~ 706 (829)
..... ...+..+..++=.+.+|+..|.++.|| .+.+++.....+ -++........ .++...+...
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D 292 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQNKVVSMD 292 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-CCCceEEecc
Confidence 32211 123344444455788999999999999 776665443322 23333322222 2234455555
Q ss_pred CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 707 NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
...+..||..+|+..-.......+.-.- ..+..|.++++..++.+..|=
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C------------~~p~sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFC------------FVPGSGMFFTANESSKMHTYY 341 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCcee------------eecCCceEEEecCCCcceeEE
Confidence 6678889999998765444333221111 123378888888888776553
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.3e-05 Score=80.17 Aligned_cols=320 Identities=12% Similarity=0.099 Sum_probs=160.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE----cCCc-----------ee---------eceEEeeCCcEEEEEEeCCEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK----LEGR-----------IE---------CSAAVLADFSQVVVGCYKGKI 540 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~----~~~~-----------~~---------~~~~~~~~~~~v~vg~~dg~l 540 (829)
....|++|..+|.|..||+.|-...-+++ ++.. .+ ....+......+.+--.|..|
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 56789999999999999988754433221 1100 00 122233233345455568899
Q ss_pred EEEEcCC----CcE---------EEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCC---eEEEeeccC----
Q 003331 541 YFLDYLT----GDI---------YWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPCG---- 599 (829)
Q Consensus 541 ~~~d~~t----G~~---------~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~---- 599 (829)
|.||..+ |+. +|..+.-. .+...+.-.-..+-+.+.+.|++|+.||.+.+ ....+-...
T Consensus 349 YvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ 428 (1080)
T KOG1408|consen 349 YVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLS 428 (1080)
T ss_pred EEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhh
Confidence 9999876 332 34433211 22221111112355777888999999998752 222211000
Q ss_pred ------------------------------CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceee
Q 003331 600 ------------------------------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 600 ------------------------------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
..-+...++++++..+..|...|+|.++++.. -+..-..+.+......
T Consensus 429 ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 429 KIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILC 506 (1080)
T ss_pred cCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEE
Confidence 01123445677677788888888999998775 3332233333222211
Q ss_pred eeee---ecCCEEEEEeeCCeEEEEc--CCCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEE-EEeCCCCcEEE
Q 003331 650 LCIT---SANRHVICCLVDGHVVALD--SSGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIY-SFEQESGNLLW 722 (829)
Q Consensus 650 ~~~~---~~~~~l~~~~~~g~i~~~d--~~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~-~~d~~tG~~~w 722 (829)
..++ ...+.+..++.+.-|.+|| ++-.++-+... ...+.+..+...+.+-.++.+..|..++ ..+.+.+.-.-
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 1111 1234556667777788888 33333322222 1122222222222222344443343322 11111111110
Q ss_pred EEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE
Q 003331 723 EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM 802 (829)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 802 (829)
......... ..+++.....+...++.+++.|..|.+||.++++ ....++-.-.--..++.
T Consensus 587 f~r~t~t~~-------ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-------------q~k~FKgs~~~eG~lIK 646 (1080)
T KOG1408|consen 587 FPRHTQTLS-------KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-------------QVKSFKGSRDHEGDLIK 646 (1080)
T ss_pred ccccccccc-------cceEEEeeeCCCcceEEEEecccceEEEeccccc-------------eeeeecccccCCCceEE
Confidence 111111111 1111222233447889999999999999999873 22223221111112221
Q ss_pred ---E--CCEEEEeeeCCeEEEEecccccc
Q 003331 803 ---I--GGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 803 ---~--~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+ +.+|...|.|..|-++|..+|+.
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchh
Confidence 2 34555567799999999998874
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00033 Score=70.50 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=112.9
Q ss_pred ceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-
Q 003331 521 SAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC- 598 (829)
Q Consensus 521 ~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~- 598 (829)
.+++....+.+|+ ....+.|+.+|..+++..- +..+. . ...++...++.+|++... .+..+|+.+|+.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~-~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-P-NGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-E-EEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-C-ceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 3455543344444 4457899999988876642 34444 2 223344245888888765 466669999976554433
Q ss_pred -C---CcccccceeecCCCEEEEEecC---------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE-ee
Q 003331 599 -G---GSIFGSPAIDEVHDVLYVASTS---------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC-LV 664 (829)
Q Consensus 599 -~---~~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~-~~ 664 (829)
. .......++++ ++.+|++... |.++.++.+ ++...... ........++.++++.+|+. +.
T Consensus 80 ~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD---GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp TTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT---SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred CCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC---CeEEEEec-CcccccceEECCcchheeecccc
Confidence 1 22333455665 5679988643 568888877 23221111 11112456677788888865 45
Q ss_pred CCeEEEEc-C-CCC-EEEE---eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecC
Q 003331 665 DGHVVALD-S-SGS-IIWR---CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 665 ~g~i~~~d-~-~g~-~~w~---~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
.+.|+.++ . .+. +... .......-...-+..+.+|+||++.. .+.|+++|++ |+++-.+..+
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 67888888 3 343 2111 11111100011133566889999865 6789999987 9998777766
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0011 Score=70.15 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=147.4
Q ss_pred EEEEEEeC----CEEEEEEc--CCCcEEEEEec-CCeeeeeeeeecCCCEEEEecc----CCeEEEEEcCC--CeEEEe-
Q 003331 530 QVVVGCYK----GKIYFLDY--LTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSH----DHNLYALDFRN--YRCVYK- 595 (829)
Q Consensus 530 ~v~vg~~d----g~l~~~d~--~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~----~g~l~~~d~~t--g~~~w~- 595 (829)
.+|+|++. ++|+.|+. ++|++...... .....+...++++++.||+... .+.|.+|+... |++...
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47899987 68877665 77776543221 1222233456677899999865 46776665543 655432
Q ss_pred -eccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEee-----cc--------CCcceeeeeeeecCCEEE
Q 003331 596 -LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH-----EL--------EVPAFASLCITSANRHVI 660 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~-----~~--------~~~~~~s~~~~~~~~~l~ 660 (829)
....+..-+...+++++..+|++.. +|.+..++++.. |...... .. ..+......+.++++.+|
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~ 159 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVY 159 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEEE
Confidence 3323444455667777889999885 678888888753 5433221 10 112234556677788888
Q ss_pred EEee-CCeEEEEc-CC--CCEEEEeecCCceeecCc-cccc-CCCeEEEEee-CCeEEEEeCC--CCcEEEEEecCC---
Q 003331 661 CCLV-DGHVVALD-SS--GSIIWRCRTGGPIFAGPC-TSFA-LPSQVLICSR-NGSIYSFEQE--SGNLLWEYSVGD--- 728 (829)
Q Consensus 661 ~~~~-~g~i~~~d-~~--g~~~w~~~~~~~~~~~~~-~~~~-~~~~i~~~t~-~g~l~~~d~~--tG~~~w~~~~~~--- 728 (829)
+... ...|+.|+ .. +++.-......+.-+.|. +... .+..+|+.+. ++.|..++.. +|++........
T Consensus 160 v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 160 VPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp EEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred EEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 8753 34677777 33 334321111101111111 1111 2356777754 5667777765 776544322111
Q ss_pred ccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECC
Q 003331 729 PITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGG 805 (829)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~ 805 (829)
...... .... -....++.++|+... ++.|.+|+.+.. .+. ..........+..-....+ .+.
T Consensus 240 ~~~~~~-~~~~-----i~ispdg~~lyvsnr~~~sI~vf~~d~~-~g~--------l~~~~~~~~~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 240 GFTGEN-APAE-----IAISPDGRFLYVSNRGSNSISVFDLDPA-TGT--------LTLVQTVPTGGKFPRHFAFSPDGR 304 (345)
T ss_dssp TSCSSS-SEEE-----EEE-TTSSEEEEEECTTTEEEEEEECTT-TTT--------EEEEEEEEESSSSEEEEEE-TTSS
T ss_pred cccccC-Ccee-----EEEecCCCEEEEEeccCCEEEEEEEecC-CCc--------eEEEEEEeCCCCCccEEEEeCCCC
Confidence 100000 0000 012345888998875 446888887421 111 1223333333332223333 577
Q ss_pred EEEEeee-CCeEEEE--eccccccc
Q 003331 806 RVFVGCR-DDYIYCI--ALETQHLE 827 (829)
Q Consensus 806 ~l~vg~~-~g~l~~~--d~~tg~~~ 827 (829)
.||+++. ++.|.+| |.++|++.
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGKLT 329 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEecCCCeEEEEEEeCCCCcEE
Confidence 8999875 4566666 55688764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00025 Score=77.59 Aligned_cols=220 Identities=14% Similarity=0.106 Sum_probs=125.2
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|.. |+..-..........++.++++++.++..+++ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 177 ~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 254 (427)
T PRK02889 177 QLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTL 254 (427)
T ss_pred EEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 57777763 43322222233344578899998888776653 359999999997654322332 33467777777777
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..++... ++..+......+.+++++..+++.+. .| .||.++..+ ++..- ........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~-lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQR-VTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEE-EecCCCCc
Confidence 65 45554 4888888776543 33333334456778877777776554 23 466677654 43211 11122222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCC---eEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g---~l~~~d~~tG~~ 720 (829)
.++.++++++.+++.+..+ .|+.+| .+|+...-.. ... ...+.... .+..|++.+.++ .++.++. +|+.
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~-~~~-~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~ 406 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD-TTR-DESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRI 406 (427)
T ss_pred CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC-CCC-ccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCc
Confidence 3566777888887766544 588899 7776543222 111 12222222 233455555433 4777776 5666
Q ss_pred EEEEec
Q 003331 721 LWEYSV 726 (829)
Q Consensus 721 ~w~~~~ 726 (829)
......
T Consensus 407 ~~~l~~ 412 (427)
T PRK02889 407 KQRLSV 412 (427)
T ss_pred eEEeec
Confidence 655543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00014 Score=69.38 Aligned_cols=269 Identities=16% Similarity=0.111 Sum_probs=157.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE------EEEE------cCC--c-eeeceEEe-eCCcEEEEEEeCCEEEEEEcCCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL------WEIK------LEG--R-IECSAAVL-ADFSQVVVGCYKGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~------w~~~------~~~--~-~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG 548 (829)
.+.++..|..||.+..||++.-... -... .++ + .+.++... .|.+.+..++.|..|..||..|-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 5778889999999999998754311 0000 001 1 12233322 35567777889999999999999
Q ss_pred cEEEEEecCCeeeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEE
Q 003331 549 DIYWTFQTCGEVKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLT 625 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~ 625 (829)
+..-.|..++.+++.... ....-.|.+|+.+-.|...|+++|..-.....+....-+.-..+..+ .++.|+.||.+.
T Consensus 135 Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~ir 214 (397)
T KOG4283|consen 135 QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIR 214 (397)
T ss_pred eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEE
Confidence 998888888877643221 11234566788888899999999988777665433222222333223 466788899999
Q ss_pred EEEccCCCceEEEeeccC---Cc----------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE--------EEeec
Q 003331 626 AISVKALPFHTLWLHELE---VP----------AFASLCITSANRHVICCLVDGHVVALD-SSGSII--------WRCRT 683 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~---~~----------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~--------w~~~~ 683 (829)
.||+...+|-..-.-... .| .+...+...++..++.++.+..+..++ .+|+-- .....
T Consensus 215 lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~ 294 (397)
T KOG4283|consen 215 LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT 294 (397)
T ss_pred EEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc
Confidence 999887555433211111 11 123345555666777777788888888 666421 11111
Q ss_pred CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 684 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 684 ~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
+..+... ....+-.+.+ -.+++++.++.-+|.++.....+.......+... .-...+.|..|+.+
T Consensus 295 ~~~~~~~---~~~s~vfv~~-p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-----------~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 295 SFAVHIQ---SMDSDVFVLF-PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-----------DFEQCFTGDMNGNI 359 (397)
T ss_pred cceEEEe---ecccceEEEE-ecCCeEEEEEccCceEEEeeecccceeeEEeecC-----------chhhhhccccCCcc
Confidence 1111100 1111112233 3458899999999988755554422221111111 13456788888888
Q ss_pred EEEEe
Q 003331 764 HILRV 768 (829)
Q Consensus 764 ~~~d~ 768 (829)
+.|-+
T Consensus 360 ~~w~p 364 (397)
T KOG4283|consen 360 YMWSP 364 (397)
T ss_pred ccccc
Confidence 88754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00055 Score=69.83 Aligned_cols=308 Identities=13% Similarity=0.090 Sum_probs=155.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-----EE--eCCEEEEEEcCCCcEEEEEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-----GC--YKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-----g~--~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
.++.|...+.|. ++.+++++|+.+.- ..+-.+...+-++++|..|.. |+ ..+.||.++.++|+.+...-.+
T Consensus 49 ~GD~IiFt~~Dd-lWe~slk~g~~~ri-tS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG 126 (668)
T COG4946 49 YGDRIIFTCCDD-LWEYSLKDGKPLRI-TSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG 126 (668)
T ss_pred cCcEEEEEechH-HHHhhhccCCeeEE-ecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec
Confidence 345555555554 88899999987643 334445556677777765544 32 2356899998999876532222
Q ss_pred CeeeeeeeeecC-------------------------------------------CCEEEEeccCCeEEEEE---cCCCe
Q 003331 558 GEVKCQPVVDAP-------------------------------------------RQLIWCGSHDHNLYALD---FRNYR 591 (829)
Q Consensus 558 ~~~~~~~~~~~~-------------------------------------------~~~i~~gs~~g~l~~~d---~~tg~ 591 (829)
.......-+.++ ++.+++|-..-.|=-|. --|..
T Consensus 127 r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGGtrG 206 (668)
T COG4946 127 RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRG 206 (668)
T ss_pred cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCCccc
Confidence 111111111111 12222221100000010 01222
Q ss_pred EEEeeccCC----------cccccceeecCCCEEEEEec---CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE
Q 003331 592 CVYKLPCGG----------SIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 592 ~~w~~~~~~----------~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
.+|.-..++ ...++|++-. +++|+-+. -|++|..|++ |+-+-+...-.. ...-....++++
T Consensus 207 klWis~d~g~tFeK~vdl~~~vS~PmIV~--~RvYFlsD~eG~GnlYSvdld---GkDlrrHTnFtd-YY~R~~nsDGkr 280 (668)
T COG4946 207 KLWISSDGGKTFEKFVDLDGNVSSPMIVG--ERVYFLSDHEGVGNLYSVDLD---GKDLRRHTNFTD-YYPRNANSDGKR 280 (668)
T ss_pred eEEEEecCCcceeeeeecCCCcCCceEEc--ceEEEEecccCccceEEeccC---CchhhhcCCchh-ccccccCCCCcE
Confidence 345433222 2346666665 78877664 2678888877 443322211100 111223345667
Q ss_pred EEEEeeCCeEEEEcCCCCEEEEeecCC--------ceeecCcc----cccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 659 VICCLVDGHVVALDSSGSIIWRCRTGG--------PIFAGPCT----SFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~~w~~~~~~--------~~~~~~~~----~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
+++. ..|.|+.+|.+...+-+...+- +.+..|.- ....+|..++--..|..+..+...|-.+ +...
T Consensus 281 IvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~i-qv~~ 358 (668)
T COG4946 281 IVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSI-QVGK 358 (668)
T ss_pred EEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeE-EcCC
Confidence 7665 4688999993333333443332 22333221 0122344444434567888876655433 1111
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCC-cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECC
Q 003331 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG-SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGG 805 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 805 (829)
...+...-. ........+|+.|| .|-++|..++ +.....+--|++++-.+-.+|
T Consensus 359 ~~~VrY~r~------------~~~~e~~vigt~dgD~l~iyd~~~~-------------e~kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 359 KGGVRYRRI------------QVDPEGDVIGTNDGDKLGIYDKDGG-------------EVKRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred CCceEEEEE------------ccCCcceEEeccCCceEEEEecCCc-------------eEEEeeCCccceEEEEEcCCC
Confidence 122211111 11244678899998 7889998865 222222233445544444454
Q ss_pred -EEEEeeeCCeEEEEeccccccc
Q 003331 806 -RVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 806 -~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.+.++.....|..+|.++|+.+
T Consensus 414 K~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCee
Confidence 4777777888999999998853
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-05 Score=72.90 Aligned_cols=268 Identities=12% Similarity=0.131 Sum_probs=157.4
Q ss_pred CCeEEEEecCCCcEEEEECCC------------Cc------EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC
Q 003331 485 SDIYLFVGSHSHKFICADAKR------------SS------VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL 546 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t------------g~------~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~ 546 (829)
++..+..|+.|..|..+|... |. ++.++--+..-+....+.+....+..|+.|+.|..||..
T Consensus 123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfs 202 (430)
T KOG0640|consen 123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFS 202 (430)
T ss_pred CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecc
Confidence 566777888899999998751 11 111111111123455677777788899999999999965
Q ss_pred CCcEEEEEec--CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC---cccccceeecCCCEEEE-Eec
Q 003331 547 TGDIYWTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYV-AST 620 (829)
Q Consensus 547 tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~l~v-~t~ 620 (829)
.-..+.-++. .....-+..+.+.+..+.+|+....++.||..|-++.-...... ..+...-++. .+.+|+ ++.
T Consensus 203 K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSk 281 (430)
T KOG0640|consen 203 KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASK 281 (430)
T ss_pred cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEecc
Confidence 4333222211 22333444567788999999988899999999877654433211 1222233333 355555 677
Q ss_pred CCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC----ceeecCcc
Q 003331 621 SGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG----PIFAGPCT 693 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~----~~~~~~~~ 693 (829)
||.|..||--. ++.+-.+.. ++...-+..+..++++++....|..+..|. .+|+.+-.+...+ ..+....+
T Consensus 282 DG~IklwDGVS--~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAv 359 (430)
T KOG0640|consen 282 DGAIKLWDGVS--NRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAV 359 (430)
T ss_pred CCcEEeecccc--HHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhh
Confidence 99999998443 443333321 222234445666777888888888999999 8898887765332 12222223
Q ss_pred cccCCCeEEEEe-eCCeEEEEeCCCCcE--EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 694 SFALPSQVLICS-RNGSIYSFEQESGNL--LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 694 ~~~~~~~i~~~t-~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
....++.+.+.. ..+.+.+||..++.. +|.....+.+.... . .+.+.-...++.|-....|-
T Consensus 360 FNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~----------H--SP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 360 FNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV----------H--SPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE----------e--CCCCCceeeecccceeeeee
Confidence 333445555543 357899999998765 34444333321110 0 11144455666676666663
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00012 Score=74.27 Aligned_cols=232 Identities=12% Similarity=0.112 Sum_probs=139.0
Q ss_pred cEEEEEEeCCEEEEEEcCCCcE----EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEE--EeeccCCc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDI----YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCV--YKLPCGGS 601 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~--w~~~~~~~ 601 (829)
+.|.+|...|.|-.||..+.+. ...+..++...+...+.+ +...||..|+||.+.+-|.+++... ........
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 4688888889999999842221 122333333333333332 4577999999999999998876432 22222344
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-C--CCCE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-NRHVICCLVDGHVVALD-S--SGSI 677 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~--~g~~ 677 (829)
.+++.-+..+...++++..-|.+..||..+ .|+..|.......-..+..+.+- .-.+..++.+++...|| . .++.
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~-~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRT-DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeec-CCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCC
Confidence 555555665567788888777888999887 36667777666554455555443 34566777889998999 3 3332
Q ss_pred ---EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC----CCcEEEEEecCCcc--cccccccccccccccccc
Q 003331 678 ---IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE----SGNLLWEYSVGDPI--TASAYIDEHLQLKLESCL 748 (829)
Q Consensus 678 ---~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~----tG~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~ 748 (829)
+..+.....+.+.-+.+ .+++|...+.|..|..||.. .-.+.-...+.... ..+++- ....
T Consensus 360 sp~lst~~HrrsV~sAyFSP--s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK--------A~W~ 429 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSP--SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK--------AAWD 429 (498)
T ss_pred CcceecccccceeeeeEEcC--CCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh--------heeC
Confidence 22222222222211111 35678888899999999973 22222222222111 112211 1123
Q ss_pred CCCcEEEEEccCCcEEEEEeecC
Q 003331 749 SIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.+++++|.....|-+||...+
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCC
Confidence 35889999999888999988765
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00054 Score=72.43 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=128.6
Q ss_pred eCCCeEEEEecC-CCcEEEEECC-CCcEEE--EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcC-CCcE---EEE
Q 003331 483 KDSDIYLFVGSH-SHKFICADAK-RSSVLW--EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDI---YWT 553 (829)
Q Consensus 483 ~d~~~~l~igs~-~g~l~~~d~~-tg~~~w--~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~-tG~~---~w~ 553 (829)
+.++..||+++. ++.|..|+.. +|+..- .....+. .....++++++.+|++++ ++.|..||.. +|.. +..
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~-p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS-PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC-ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 335678888864 6778888875 455321 1222222 234567778889999876 6788899875 3432 222
Q ss_pred EecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC-CeEEE------eeccCCcccccceeecCCCEEEEEec-CCeE
Q 003331 554 FQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YRCVY------KLPCGGSIFGSPAIDEVHDVLYVAST-SGRL 624 (829)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~~~w------~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l 624 (829)
....... ....+.++++.+|+.+. ++.|..||..+ |.+.- ....+ .-...+.+++++..+|+... ++.|
T Consensus 122 ~~~~~~~-~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 122 IEGLEGC-HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred ccCCCcc-cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEE
Confidence 2111112 22345667778887654 47899999876 33221 11112 11233566777789999876 7889
Q ss_pred EEEEccCCCceE--EEeeccCC-----cce-eeeeeeecCCEEEEEee-CCeEEEEc--CCCCEE---EEeecCCceeec
Q 003331 625 TAISVKALPFHT--LWLHELEV-----PAF-ASLCITSANRHVICCLV-DGHVVALD--SSGSII---WRCRTGGPIFAG 690 (829)
Q Consensus 625 ~~~~~~~~~g~~--~w~~~~~~-----~~~-~s~~~~~~~~~l~~~~~-~g~i~~~d--~~g~~~---w~~~~~~~~~~~ 690 (829)
.+|+.+..+|+. .-...... +.. ....+.++++.+|++.. ++.|.+|+ .++..+ -....+....
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~-- 277 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPR-- 277 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCC--
Confidence 999987432433 22221111 111 12456678889999864 56788887 333221 1222211000
Q ss_pred Cccccc-CCCeEEEEee-CCeEEEEe--CCCCcE
Q 003331 691 PCTSFA-LPSQVLICSR-NGSIYSFE--QESGNL 720 (829)
Q Consensus 691 ~~~~~~-~~~~i~~~t~-~g~l~~~d--~~tG~~ 720 (829)
.+... .+..+|++.. ++.|..|+ ..+|.+
T Consensus 278 -~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 278 -GFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred -ceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 11122 3457887765 67777765 355655
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0004 Score=76.31 Aligned_cols=215 Identities=13% Similarity=0.144 Sum_probs=123.0
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+.... +..+.....++.+++|++.|+..++ +..||.+|..+|+..-.....+ ....+.+++++..|
T Consensus 183 ~l~~~d~dg~~~~~-lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRY-LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcEE-EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 67788875544432 3334444567889999887776654 3579999999987643222232 33456777777666
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+++... +.........+.+++++..|++.+. +| .|+.+|.++ ++... ........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~-lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRR-ISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEE-eecCCCcc
Confidence 54 44443 59999998887643 3323334456777777777776663 22 689999775 43322 22222223
Q ss_pred eeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee-C-----CeEEEEeCCC
Q 003331 648 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-N-----GSIYSFEQES 717 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~-----g~l~~~d~~t 717 (829)
..+.++++++.+++...+ ..++.+| .++.. .....+.. ...+.... .+..|++.+. . ..|+.+|..+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~-~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFL-VEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCC-CCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCC
Confidence 456677888888776543 2577777 44432 22222211 12222211 1334554433 2 2588888765
Q ss_pred CcE
Q 003331 718 GNL 720 (829)
Q Consensus 718 G~~ 720 (829)
++.
T Consensus 414 ~~~ 416 (435)
T PRK05137 414 RNE 416 (435)
T ss_pred Cce
Confidence 544
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-05 Score=71.44 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=131.9
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++.+++++.||.+..||..- .+++-.++-+.+-+.+.-.. .....++++++|++|..|+..-++-+.++..+.....
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 467788899999999999421 23333333343322233222 2334677889999999999988888888887777777
Q ss_pred eeeeecC-CCEEEEeccCCeEEEEEcCC-CeEEEeeccCC-cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAP-RQLIWCGSHDHNLYALDFRN-YRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~-~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
...+.+. .+.+...|.|+.+..||.+. |+.+- +..+. .+.+.---..+...++.+..|+.|+.||+.+- -.++..
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~-r~pl~e 229 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL-RTPLFE 229 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhc-ccccee
Confidence 7777654 45556678899999999764 54443 44443 22222222223567888888999999998861 112222
Q ss_pred eccCCcceeeeeeeec-CCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 640 HELEVPAFASLCITSA-NRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
...+.-..-....++. ...+..+++|-++..+| ..+ ..+-++..........-.+.-..+.+-..+.|+.++.|++
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 2111111112222222 23456677888888888 322 2221222111111111011113456666778888999885
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0048 Score=65.38 Aligned_cols=271 Identities=14% Similarity=0.122 Sum_probs=144.6
Q ss_pred EEEEecCC----CcEEEEEC--CCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEe----CCEEEEEEcC--CCcEEE--
Q 003331 488 YLFVGSHS----HKFICADA--KRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCY----KGKIYFLDYL--TGDIYW-- 552 (829)
Q Consensus 488 ~l~igs~~----g~l~~~d~--~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~----dg~l~~~d~~--tG~~~w-- 552 (829)
++|+|+.. +.|+.|+. .+|++...... ....-...+++++++.||+... ++.|..|+.. +|++..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 47888876 56766655 77776543221 1111224566778899999976 3577666543 366543
Q ss_pred EEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC-CeEEEeec---c--C--------CcccccceeecCCCEEEE
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN-YRCVYKLP---C--G--------GSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t-g~~~w~~~---~--~--------~~~~~~~~~~~~~~~l~v 617 (829)
+....+...+...+++++..+|++.+ +|.+..++... |.+..... . . ..-.-...++++++.+|+
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33334444555667778889999875 67788888765 65544321 1 0 011112345666788888
Q ss_pred Eec-CCeEEEEEccCCCceEEE--eeccC-CcceeeeeeeecCCEEEEEee-CCeEEEEc-C--CCCEEEE--eecC-Cc
Q 003331 618 AST-SGRLTAISVKALPFHTLW--LHELE-VPAFASLCITSANRHVICCLV-DGHVVALD-S--SGSIIWR--CRTG-GP 686 (829)
Q Consensus 618 ~t~-~g~l~~~~~~~~~g~~~w--~~~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~--~g~~~w~--~~~~-~~ 686 (829)
... ...|+.|+.+...++... ..... ........+.++++.+|+... ++.|.+++ . +|.+... .... ..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 654 346888888764443322 11111 111234567778888888764 56788887 4 6644322 1111 00
Q ss_pred e--e-ecCccccc-CCCeEEEEee-CCeEEEEeC--CCCcEEEEE--ecCCccccccccccccccccccccCCCcEEEEE
Q 003331 687 I--F-AGPCTSFA-LPSQVLICSR-NGSIYSFEQ--ESGNLLWEY--SVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 687 ~--~-~~~~~~~~-~~~~i~~~t~-~g~l~~~d~--~tG~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
. . ....+... .+..+|+... .+.|.+|+. .+|++.... ...........+ ..++.++|++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~-----------s~~g~~l~Va 309 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF-----------SPDGRYLYVA 309 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE------------TTSSEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE-----------eCCCCEEEEE
Confidence 0 0 00011122 2446888764 345666665 667775432 222221111111 2247888887
Q ss_pred cc-CCcEEEEEee
Q 003331 758 TS-SGSIHILRVN 769 (829)
Q Consensus 758 ~~-~G~l~~~d~~ 769 (829)
.. ++.|.+|+.+
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 64 5678887664
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-05 Score=79.88 Aligned_cols=279 Identities=13% Similarity=0.107 Sum_probs=155.3
Q ss_pred ccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003331 464 ELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 464 ~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
..|++.-..||.-- -+..++..+.++.. .+++.||+++|..+-..+.+...+.+++.+.+|+.+..|+.|..+..|
T Consensus 5 ~~~r~~~~hci~d~---afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 5 LTWRDKAEHCINDI---AFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred hhhhcccccchhee---EECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 45777666666421 12234555555554 469999999999998888887777788999999999999999999999
Q ss_pred EcCC-CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 544 DYLT-GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 544 d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
+.+- |.+ +|..++.+. ...+.+-...+...+.+ .+-.|.++.... -++... .-..+.....++.++.+|-.+|
T Consensus 81 ~~klEG~L--kYSH~D~IQ-CMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~kss-~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 81 TSKLEGIL--KYSHNDAIQ-CMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHKSS-SRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred ccccccee--eeccCCeee-EeecCchHHHhhhcchh-hccccChhhhhH-Hhhhhh-eeEEEeeecCCCcEEEEeccCc
Confidence 8653 333 344444433 33444433334433322 233444333211 111111 1122334445567788888899
Q ss_pred eEEEEEccCCCceEEEeeccC---Ccceeeeeeeec-----CCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCccc
Q 003331 623 RLTAISVKALPFHTLWLHELE---VPAFASLCITSA-----NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTS 694 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~---~~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~ 694 (829)
+|..-|.. |+..-..+.+ .....+.+..+. ++.+.+..++.++..+.-+|+.+-+-..- -+...|+.
T Consensus 155 TIsiRNk~---gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L--~FdP~Cis 229 (1081)
T KOG1538|consen 155 TISIRNKN---GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRAL--NFDPCCIS 229 (1081)
T ss_pred eEEeecCC---CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccC--CCCchhhe
Confidence 88776544 5544444331 112233343332 33555555655555555455554321110 01122222
Q ss_pred -ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 695 -FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 695 -~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
...+..+.+|..++.+..|- ..|-.+-+.-.-.....+.... ++++.+.+|+.||+|-+|+.-
T Consensus 230 Yf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~-----------PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 230 YFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAK-----------PNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEc-----------cCCceEEEEEccCeeehhhhH
Confidence 33456788888888888886 4454433222111111222221 237889999999999988764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=71.36 Aligned_cols=190 Identities=13% Similarity=0.091 Sum_probs=111.5
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-eee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQ 563 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~ 563 (829)
..|.++-.+|.+.+||..||+.+-.++........+.+.. ....|++++.||.|.+||..+-...-++...... ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4577777889999999999998888876654444444444 3457899999999999998876554333332221 111
Q ss_pred eeeec--CCCEEEEecc----CCeEEEEEcCCCeE-EEee-ccCCccccccee-ecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 564 PVVDA--PRQLIWCGSH----DHNLYALDFRNYRC-VYKL-PCGGSIFGSPAI-DEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 564 ~~~~~--~~~~i~~gs~----~g~l~~~d~~tg~~-~w~~-~~~~~~~~~~~~-~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
..++. .++.+-+|+. +-.|+.||...-+. +..+ ..+..-+....+ ..+.+.|+.|+.||.+..||.+...-
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 22332 3445555542 45689999876544 2221 122222333333 33457888999999999999774210
Q ss_pred e--EEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 635 H--TLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 635 ~--~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+ .+..... ........... .-++||+-+..++++.|+ ..|..
T Consensus 201 eDaL~~viN~-~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 201 EDALLHVINH-GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred hhhHHHhhcc-cceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 0 0000111 11112222222 224788888888888888 66653
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00011 Score=70.56 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=140.9
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC------------CcE------EEE-EecCCeeeeeeeeecCCCEEEEeccCCe
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLT------------GDI------YWT-FQTCGEVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t------------G~~------~w~-~~~~~~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
.+.++.||..+..|+.|..|..+|.+- |.. +.+ |+.-++ .....+.+....+..|+.|+.
T Consensus 117 ~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de-vn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 117 AAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE-VNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc-ccceeecchhheEEeccCCCe
Confidence 566778888888899999999998651 110 111 111112 223445555677788999999
Q ss_pred EEEEEcCCCeEEEeec--cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC---cceeeeeeeecC
Q 003331 582 LYALDFRNYRCVYKLP--CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV---PAFASLCITSAN 656 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~---~~~~s~~~~~~~ 656 (829)
+..||...-..+..++ .......++.+.+.++.+++||.-..+..||+++ -+..-...... ........+..+
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTG 273 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc--eeEeeecCcccccccceeEEEecCCc
Confidence 9999976432222111 1223445566677789999999999999999997 43332222111 112233444456
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEEEee---cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc---
Q 003331 657 RHVICCLVDGHVVALD-SSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP--- 729 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~--- 729 (829)
.....++.||.|..|| -+++.+-.+. .+..+.+..+ ...+..|.....|..++.|...||+.+-.|...+.
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~F--tkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgr 351 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVF--TKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGR 351 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEE--ccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccc
Confidence 6666788999999999 6776654433 2223333321 11233566667788999999999999876653211
Q ss_pred -cccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 730 -ITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 730 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
...+-.+.+ . .+.++.... ..+.+..||.++.
T Consensus 352 q~~rtqAvFN------h----tEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 352 QKHRTQAVFN------H----TEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred hhhhhhhhhc------C----ccceEEccccccCceeeccccch
Confidence 111111111 1 144555443 4677999998865
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00013 Score=77.00 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=148.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEE------EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE--E-e
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVL------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT--F-Q 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~------w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~--~-~ 555 (829)
....||++..+|.|..+|...-.+. -....+...+......+....++..+.|.++.+||.+++++.-. + .
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence 5778999999999999997654433 11122333333334445555677788899999999998887643 2 2
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-----------------------------EEeeccCCccccc-
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-----------------------------VYKLPCGGSIFGS- 605 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-----------------------------~w~~~~~~~~~~~- 605 (829)
..+.+++....-.+...+.+|+.||.+..||..-... .|+.. .+.+.++
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssv 221 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSV 221 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeee
Confidence 2334444333333445666789999999999752210 00000 1122221
Q ss_pred -ceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeec------cCCc-----ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 606 -PAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHE------LEVP-----AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 606 -~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~------~~~~-----~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.++..|+..|..++. |+.+-+||+.+ -......+ .... .+.+......+.++++.+.|+.||+||
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk--~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRK--NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecc--cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 223333566666555 89999999876 22222111 1111 123334444578999999999999999
Q ss_pred -CC--CCEEEEeecC--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccc
Q 003331 673 -SS--GSIIWRCRTG--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLE 745 (829)
Q Consensus 673 -~~--g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~ 745 (829)
.. -.++..+... ...+...++ .-.+..+..|+.+...|.|..++-+.--....+.. +...-+
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~l-Spd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w---------- 368 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSEL-SPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRW---------- 368 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeec-CCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEee----------
Confidence 32 1222222110 011111111 11245677888888888887765432100011111 000000
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.......++.+++|-++.+|+...+.
T Consensus 369 -~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 369 -LPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -ccccCCCceeeccCcceEEEeccCch
Confidence 01113456666888899999987654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00042 Score=74.12 Aligned_cols=311 Identities=13% Similarity=0.150 Sum_probs=163.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC----c---------EEEEEEc-CCcee--eceEEeeCCcEEEEEEeCCEEEEEEcCCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRS----S---------VLWEIKL-EGRIE--CSAAVLADFSQVVVGCYKGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg----~---------~~w~~~~-~~~~~--~~~~~~~~~~~v~vg~~dg~l~~~d~~tG 548 (829)
....|-+--.|+.||.||..+- + .+|..+. +-.+. .+.++- . +-+...+.|++|..||++.+
T Consensus 335 t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp-~-~cF~TCSsD~TIRlW~l~~c 412 (1080)
T KOG1408|consen 335 TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLP-R-GCFTTCSSDGTIRLWDLAFC 412 (1080)
T ss_pred CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCC-c-cceeEecCCCcEEEeecccc
Confidence 3445555556788999998752 2 3554332 11111 122222 2 34666777999999997653
Q ss_pred ---cEEEEEecC----------C-----------------------e-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 549 ---DIYWTFQTC----------G-----------------------E-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 549 ---~~~w~~~~~----------~-----------------------~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
.+..+--.. + . -.-+..+.+++..+..|..-|+|+.+|+..-+
T Consensus 413 tnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 413 TNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred cccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 332210000 0 0 01223445566677777777899999987765
Q ss_pred EEEeeccCCcc-----cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC--EEEEEee
Q 003331 592 CVYKLPCGGSI-----FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR--HVICCLV 664 (829)
Q Consensus 592 ~~w~~~~~~~~-----~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~--~l~~~~~ 664 (829)
..-....+... ++.|.+.. ..+..++.+.-|.+||... .-.++.+...+...+.+..+...+. .++.+..
T Consensus 493 ~~~~~eAHesEilcLeyS~p~~~~--kLLASasrdRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGA 569 (1080)
T KOG1408|consen 493 YTCFMEAHESEILCLEYSFPVLTN--KLLASASRDRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA 569 (1080)
T ss_pred hhhheecccceeEEEeecCchhhh--HhhhhccCCceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccC
Confidence 55444444321 23333332 4566677788888998763 1223333333333334444444432 2333333
Q ss_pred CCeEEE-Ec-C--CCCEEEE-ee-cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccc
Q 003331 665 DGHVVA-LD-S--SGSIIWR-CR-TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 737 (829)
Q Consensus 665 ~g~i~~-~d-~--~g~~~w~-~~-~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 737 (829)
|..++. .+ + +|.+.-+ .. ... .++...+ .-.-+.+..++.|..|..||.++|+..-.++....-...+.-
T Consensus 570 DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V--dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK- 646 (1080)
T KOG1408|consen 570 DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV--DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK- 646 (1080)
T ss_pred chhhheehhccccCceeccccccccccceEEEeee--CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-
Confidence 332221 11 1 2322110 00 011 1111111 112356888889999999999999998776643322111110
Q ss_pred cccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEEC--CEEEEeeeCCe
Q 003331 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIG--GRVFVGCRDDY 815 (829)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~--~~l~vg~~~g~ 815 (829)
....+++.+++..+.|.+|.++|..+|.. ....--+++++....+.+ ..|+..+.||.
T Consensus 647 -------v~lDPSgiY~atScsdktl~~~Df~sgEc-------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 647 -------VILDPSGIYLATSCSDKTLCFVDFVSGEC-------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred -------EEECCCccEEEEeecCCceEEEEeccchh-------------hhhhcCcchheeeeeecccchhheeecCCce
Confidence 01123478888899999999999987731 221122333444333333 36777788999
Q ss_pred EEEEeccc
Q 003331 816 IYCIALET 823 (829)
Q Consensus 816 l~~~d~~t 823 (829)
|+.|.+..
T Consensus 707 IFvW~lp~ 714 (1080)
T KOG1408|consen 707 IFVWKLPL 714 (1080)
T ss_pred EEEEECch
Confidence 99998753
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0001 Score=75.35 Aligned_cols=187 Identities=13% Similarity=0.114 Sum_probs=104.2
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC-Ccceee
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE-VPAFAS 649 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s 649 (829)
-++..|+..+.+..||.+..-+......+...+....+...+.+|..++..|.|.+.+..+ +...-.+..+ ....--
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t--~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT--KQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc--CccccceecCCCCeEEE
Confidence 4455677788999999884333222232333223333333456777778888888888776 4333233222 111111
Q ss_pred eeeeec-CCEEEEEeeCCeEEEEcCCC-CEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 650 LCITSA-NRHVICCLVDGHVVALDSSG-SIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 650 ~~~~~~-~~~l~~~~~~g~i~~~d~~g-~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
..+... .-.+.+++++|.|..||.+| .+++... .........|......-.+.....|..|+.||....+..-.+..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y 249 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY 249 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee
Confidence 122222 23455677889999999434 3332221 11111111111222223344457799999999876655444444
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+.....+.+. +-++++|+..|.|+.||.+.-
T Consensus 250 ~~Plstvaf~~~------------G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 250 SHPLSTVAFSEC------------GTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred cCCcceeeecCC------------ceEEEeecCCceEEEEecccC
Confidence 445444444433 788999999999999998754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.4e-05 Score=78.36 Aligned_cols=185 Identities=12% Similarity=0.080 Sum_probs=121.6
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEE-EEc----CCc-eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEE---
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWE-IKL----EGR-IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTF--- 554 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~-~~~----~~~-~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~--- 554 (829)
.+.+...+.||.+..||...-+..-+ +.. +.+ ...++.+..++..|..||.||.|.+|+..+-. ....+
T Consensus 281 k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A 360 (641)
T KOG0772|consen 281 KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA 360 (641)
T ss_pred ccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec
Confidence 45566678899999999876442222 211 122 23466788899999999999999999953211 11111
Q ss_pred ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeecc-C-CcccccceeecCCCEEEEEec------CCeEE
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPC-G-GSIFGSPAIDEVHDVLYVAST------SGRLT 625 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~-~-~~~~~~~~~~~~~~~l~v~t~------~g~l~ 625 (829)
...+.-..+..|+.++++|..=+.|+.+..||+..-+ ++..... . ......+++++++..|+.|+. .|.|+
T Consensus 361 H~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 361 HLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred cCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEE
Confidence 2233345666777778888888889999999987643 3322211 1 122345667776677777763 46799
Q ss_pred EEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 626 AISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 626 ~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.||..+ ...+.++.............+.-+.|++|+.+|++++|-
T Consensus 441 f~d~~t--~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 441 FFDRMT--LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEeccc--eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 999887 777777766544444444555667899999999998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0018 Score=70.77 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=124.5
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+... .+..+.....++.+++||..++..+. +..|+.+|..+|+........+. ...+.+++++..|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEE
Confidence 5777776544332 22223334567899999887765443 34799999998876543333322 3456777777777
Q ss_pred EEe-ccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCG-SHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~g-s~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++. +.+| .||.+|.++|+....... ......+.+++++..|++.+..+ .||.+|+++ |+... ........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~--g~~~~-lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING--GAPQR-ITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC--CCeEE-eecCCCCc
Confidence 654 3343 599999998876543322 23445677887777776666432 678888776 54322 22222222
Q ss_pred eeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCe---EEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGS---IYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~---l~~~d~~tG~~ 720 (829)
..+.++++++.+++...+ ..++.+| .+|+.. ....... ...|.... .+..|++.+.++. ++.++. +|+.
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~-~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~ 409 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFL-DETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRF 409 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCC-CCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCC
Confidence 456677788887766543 3478888 667543 2221111 11222221 2335666665553 666665 4555
Q ss_pred EEEE
Q 003331 721 LWEY 724 (829)
Q Consensus 721 ~w~~ 724 (829)
...+
T Consensus 410 ~~~l 413 (429)
T PRK03629 410 KARL 413 (429)
T ss_pred eEEC
Confidence 4443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00019 Score=81.57 Aligned_cols=249 Identities=17% Similarity=0.121 Sum_probs=139.7
Q ss_pred ceEEee-CCcEEEEEEeCCEEEEEEcCC--Cc---E--EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC--C
Q 003331 521 SAAVLA-DFSQVVVGCYKGKIYFLDYLT--GD---I--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN--Y 590 (829)
Q Consensus 521 ~~~~~~-~~~~v~vg~~dg~l~~~d~~t--G~---~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t--g 590 (829)
..+++. ++..++.|+.||.|.+||... |+ . .-++...+.-.........++.+.+++.||.+..+++.. +
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 344444 447888999999999999653 22 1 122332222222233344567788899999888777654 2
Q ss_pred eE-----EEeecc--CCccccccee-ecCCC-EEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEE
Q 003331 591 RC-----VYKLPC--GGSIFGSPAI-DEVHD-VLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHV 659 (829)
Q Consensus 591 ~~-----~w~~~~--~~~~~~~~~~-~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l 659 (829)
+. ....+. .+........ ..... .+..+|..+.+..||+.. -...|+.+... ....+.++.+....+
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~--~~~~w~lk~~~~hG~vTSi~idp~~~Wl 1210 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRM--RHDAWRLKNQLRHGLVTSIVIDPWCNWL 1210 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchh--hhhHHhhhcCccccceeEEEecCCceEE
Confidence 11 111111 1111111111 11123 567778888899999886 67788876543 334677777778888
Q ss_pred EEEeeCCeEEEEc-CCCCEE--EEeecCCceeecCcccccC-CCe-EEEEe-eCCeEEEEeCCCCcE---EEEE-ecCCc
Q 003331 660 ICCLVDGHVVALD-SSGSII--WRCRTGGPIFAGPCTSFAL-PSQ-VLICS-RNGSIYSFEQESGNL---LWEY-SVGDP 729 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~--w~~~~~~~~~~~~~~~~~~-~~~-i~~~t-~~g~l~~~d~~tG~~---~w~~-~~~~~ 729 (829)
.+|+..|.+.+|| +-+.++ |+++...++...-+..... +.. +..+. ..+.|..|+..+|.- +|.- ..+.-
T Consensus 1211 viGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcch
Confidence 9999999999999 666554 7776554432221111111 122 33333 567899999988854 3432 11111
Q ss_pred ccccccc----ccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 730 ITASAYI----DEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 730 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
....|.. ..............++.++.|..|.+|..||...-
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1111111 00000001112234788999999999999998654
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=81.84 Aligned_cols=261 Identities=12% Similarity=0.120 Sum_probs=139.5
Q ss_pred cccccccccc--cccccccceEEeeCCCeEEEEecCCCcEEEEECCC--------CcEEEEEEcCCceeeceEEeeCCcE
Q 003331 461 FIQELWKVHM--ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR--------SSVLWEIKLEGRIECSAAVLADFSQ 530 (829)
Q Consensus 461 ~~~~~W~~~~--~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t--------g~~~w~~~~~~~~~~~~~~~~~~~~ 530 (829)
.++..|...+ ....++.-...+......++.++.+|.|..|+++. -+++|+|..+...+.+.++...+..
T Consensus 279 a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 279 AFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred hhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 4567788664 22222222222334567899999999999998821 2578999888776677888888899
Q ss_pred EEEEEeCCEEEEEEcC------CCc---EE-EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 531 VVVGCYKGKIYFLDYL------TGD---IY-WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~------tG~---~~-w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+|.|+-||.|.||+.. +.- .+ -.+..+....-...+......|...+.||+++.|++....+ ..+....
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPK 437 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcc
Confidence 9999999999999532 111 11 01111222222233444556688888899999998776544 1111110
Q ss_pred cccccce-eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEcCCCCEE
Q 003331 601 SIFGSPA-IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALDSSGSII 678 (829)
Q Consensus 601 ~~~~~~~-~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d~~g~~~ 678 (829)
. ...|. ++-..........+..+..+.+.+ .+. .....++.+ ..++...++.-++++
T Consensus 438 e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~--~ev------------------~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 438 E-HGYPLSVDRTSSRPAHSLASFRFGYTSIDD--MEV------------------VSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred c-cCCcceEeeccchhHhhhhhcccccccchh--hhh------------------hhheeeccccCCCcccccCccceEE
Confidence 0 00010 000000000000001011111111 000 001111111 111122222222222
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 679 WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
|. + ..+..|.+-.++.|..+|..+|+++...........+..++. ++.++..++
T Consensus 497 s~----------~-----~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-----------ng~~l~s~s 550 (577)
T KOG0642|consen 497 SH----------P-----TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-----------NGPYLMSGS 550 (577)
T ss_pred ec----------C-----CCCeeEecccCCceecccccccccchheeeccceecceeecC-----------CCceEEeec
Confidence 22 1 124566677889999999999999876655544444444443 388999999
Q ss_pred cCCcEEEEEee
Q 003331 759 SSGSIHILRVN 769 (829)
Q Consensus 759 ~~G~l~~~d~~ 769 (829)
.||.+..|...
T Consensus 551 ~d~sv~l~kld 561 (577)
T KOG0642|consen 551 HDGSVRLWKLD 561 (577)
T ss_pred CCceeehhhcc
Confidence 99999988765
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00094 Score=68.12 Aligned_cols=215 Identities=19% Similarity=0.168 Sum_probs=119.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE-EecC-Ce--eee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT-FQTC-GE--VKC 562 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~-~~--~~~ 562 (829)
..+|+--..+.|+.||+.+|+.. .+..++.+ .+....+.++.|++ + +.+++.++.++|..+-. .... +. ...
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~-~~~~~~d~~g~Lv~-~-~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKKR-VFPSPGGF-SSGALIDAGGRLIA-C-EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCceE-EEECCCCc-ccceeecCCCeEEE-E-ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 35777777889999999888654 24445544 23344444445544 4 34477888776666311 2211 11 111
Q ss_pred eeeeecCCCEEEEeccC------------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003331 563 QPVVDAPRQLIWCGSHD------------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
.-...+..|.+|+++.. |.||.+|+. |..+......-...+.+++++++..+|++-. .+.+++++.
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 11223345889998765 458999974 4443333322344566788887888888755 478888876
Q ss_pred cCCCceE----EEeeccCCcceeeeeeeecCCEEEEEeeCC--eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEE
Q 003331 630 KALPFHT----LWLHELEVPAFASLCITSANRHVICCLVDG--HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 630 ~~~~g~~----~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g--~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
+..+|.. .+......+..........++++|++...+ .|.+++.+|+++-++..+....+.++......+.||+
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~i 272 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYI 272 (307)
T ss_pred CcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence 6212221 111111112222223444678899655443 8999996699998887764333333222222345666
Q ss_pred Eee
Q 003331 704 CSR 706 (829)
Q Consensus 704 ~t~ 706 (829)
.+.
T Consensus 273 Ts~ 275 (307)
T COG3386 273 TSA 275 (307)
T ss_pred Eec
Confidence 543
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-07 Score=88.56 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=68.4
Q ss_pred ccccccccCccccchhhhhhcccccCCccccCCcccccCCCCC------------------ccCCCCCC-eeeeccccce
Q 003331 374 DKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLP------------------WNLSSVPM-SCSFSRCNKV 434 (829)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~------------------~~~~~~~~-~~s~~~~~~~ 434 (829)
+++||||++.|.+.+|.+|+..|+.+.++|++++++......+ +|..||.| |||+||.+|+
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~~~v~~l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~ 80 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPLLPVYGLQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAF 80 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccCceeeccccCcccccccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHH
Confidence 4699999999999999999999999999999999885322221 12229999 9999999999
Q ss_pred e--eccccccccccccceeecccc
Q 003331 435 M--HEEKIRGNDLCGVNWSLEVPR 456 (829)
Q Consensus 435 ~--~~~~~~~~~~~~~~~~~~~p~ 456 (829)
+ .+++.+++.+.+.++.-..+.
T Consensus 81 evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 81 EVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHhCCCeEEEEEEeccCCC
Confidence 8 778899999998887755554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.001 Score=73.05 Aligned_cols=218 Identities=17% Similarity=0.177 Sum_probs=125.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...+... .+..+.....++.+++++..|+..+++ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 185 ~l~i~D~~g~~~~-~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQ-TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EEEEECCCCCCce-EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEE
Confidence 5777887544333 232233334577888898887776643 369999999888654332232 33456777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.+| .||.+|..+|+... ..........+.+++++..+++.+. +| .+|.++.++ |+... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~--g~~~~-lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG--GSAER-LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCeEE-eecCCCCc
Confidence 54 44444 59999999887543 3223334456777777777776654 33 488888776 54322 11122222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~ 720 (829)
..+.++++++.+++.+.++ .|+.+| .+|+.. ....+.. ...+.... .+..|++.+.+ +.|+.++.. |..
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~-~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~ 414 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSL-DESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRV 414 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCC-CCCceECC-CCCEEEEEEecCCceEEEEEECC-CCc
Confidence 3567778888888765443 588888 777654 2222211 11222111 23345555542 358888864 444
Q ss_pred EEEE
Q 003331 721 LWEY 724 (829)
Q Consensus 721 ~w~~ 724 (829)
....
T Consensus 415 ~~~l 418 (433)
T PRK04922 415 RQRL 418 (433)
T ss_pred eEEc
Confidence 4333
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=75.08 Aligned_cols=224 Identities=10% Similarity=0.049 Sum_probs=108.6
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCc
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS 601 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~ 601 (829)
.+...|..|..|+.||+|..|...||+++|++...+.+.+. .+.+. +--|++......+..+++.=|..+-.......
T Consensus 407 Svdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~v-aw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 407 SVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSV-AWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred EecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEE-EecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 34445667889999999999999999999999988876654 34332 22344444444577777766633322211111
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCC---CceEEEeeccCCcceeeeeeeecCCEEEEEee---CCeEEEEc-CC
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKAL---PFHTLWLHELEVPAFASLCITSANRHVICCLV---DGHVVALD-SS 674 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~---~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~---~g~i~~~d-~~ 674 (829)
....|..... ++.+..|..... .+...-.+....+ .........++++.+... +..+++.. ..
T Consensus 486 l~~~~~~~~p---------~~~~~~W~~~~~~e~~~~v~~~I~~~k~-i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 486 LASAPNESEP---------DAAVVTWSRASLDELEKGVCIVIKHPKS-IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhcCCCccCC---------cccceeechhhhhhhccceEEEEecCCc-cceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 1122111110 111222221100 0000000111111 112222223444433322 22344444 22
Q ss_pred CCEEEEee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 675 GSIIWRCR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 675 g~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
.+..--+. ..+.+....+.+. .-.++++|.. .|..||.....++-++..+....++..+. ..|..
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs--~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msih-----------p~GDn 621 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPS--KPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIH-----------PNGDN 621 (733)
T ss_pred ccccCchhhcCCceeEEEecCC--CceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeec-----------CCCCe
Confidence 22111111 1111211111111 2367777754 59999988766554444444433333332 23889
Q ss_pred EEEEccCCcEEEEEeecC
Q 003331 754 VCICTSSGSIHILRVNLD 771 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~ 771 (829)
+++++.++.+..+|.+-.
T Consensus 622 li~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLS 639 (733)
T ss_pred EEEecCCCeeEEEEcccC
Confidence 999999999999998743
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0014 Score=62.66 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=135.5
Q ss_pred EeeCCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE-EEEec--
Q 003331 481 VLKDSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQT-- 556 (829)
Q Consensus 481 ~~~d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~-w~~~~-- 556 (829)
+..+.++.||.+. ..|.+=.+|+.||+.. ++.++....-..++...++..|+......|.++|.+|+++. |....
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc
Confidence 3334678777765 4577889999999986 35665443223344444456888765558999999888764 33321
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCC-eEEEEEccCCCc
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPF 634 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g 634 (829)
......+++++ ..+.+|+....|..-.+|+.++.+ +|....+..... +|... ++.||+++..+ .|..+|+.+ |
T Consensus 146 a~~nlet~vfD-~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyG-i~atp-dGsvwyaslagnaiaridp~~--~ 220 (353)
T COG4257 146 ADANLETAVFD-PWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYG-ICATP-DGSVWYASLAGNAIARIDPFA--G 220 (353)
T ss_pred CCCcccceeeC-CCccEEEeeccccceecCcccCceeeeccCCCCCCcc-eEECC-CCcEEEEeccccceEEccccc--C
Confidence 22234455555 567888877777667889887643 344443433333 33333 47788876544 466777766 4
Q ss_pred eEEEeeccCCc-ceeeee-eeecCCEEEEEee-CCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEe-eCC
Q 003331 635 HTLWLHELEVP-AFASLC-ITSANRHVICCLV-DGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNG 708 (829)
Q Consensus 635 ~~~w~~~~~~~-~~~s~~-~~~~~~~l~~~~~-~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g 708 (829)
... .+..... ...+-. .+...+.+|+.+. .+.++.|| ++. -..|.....++- ...+..+..+.||+.. ..|
T Consensus 221 ~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~ar--pys~rVD~~grVW~sea~ag 297 (353)
T COG4257 221 HAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKAR--PYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred Ccc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCC--cceeeeccCCcEEeeccccC
Confidence 211 1111111 111112 2334578888765 56799999 443 233444332221 1112355678899853 457
Q ss_pred eEEEEeCCCCcEE
Q 003331 709 SIYSFEQESGNLL 721 (829)
Q Consensus 709 ~l~~~d~~tG~~~ 721 (829)
.|..||+++-++.
T Consensus 298 ai~rfdpeta~ft 310 (353)
T COG4257 298 AIGRFDPETARFT 310 (353)
T ss_pred ceeecCcccceEE
Confidence 8999999887663
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=71.70 Aligned_cols=191 Identities=14% Similarity=0.088 Sum_probs=128.1
Q ss_pred CCCeEEEEecCCCcEEEEECC-----CCcEEEEEEcCCceeeceEEee-CCcEEEEEEeC--CEEEEEEcCCCcEEEEEe
Q 003331 484 DSDIYLFVGSHSHKFICADAK-----RSSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYK--GKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~-----tg~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~d--g~l~~~d~~tG~~~w~~~ 555 (829)
-.++.|..+..+|.+..+..+ +.+++|.. .+.... ..--.+ +...+..|+.. ..+-.||+++++.+|+-.
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~-~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLY-DVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCcee-eeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 357888888889999999877 44555533 332221 111112 22234447666 678999999999999754
Q ss_pred cCC--------eeee-eeeeecC--CCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCe
Q 003331 556 TCG--------EVKC-QPVVDAP--RQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR 623 (829)
Q Consensus 556 ~~~--------~~~~-~~~~~~~--~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~ 623 (829)
.-. .+.. ...|.+. ...+.+++..+.++.||+..+ +++-.+.......++....+.++.||+|...|.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 321 1111 1223333 456788888999999999876 577777777777777777777899999999999
Q ss_pred EEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 624 LTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
+..||... ++..-. ++.-.....+....+....+..++-|..+.++| ++.+++
T Consensus 271 l~~FD~r~--~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 271 LAKFDLRG--GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred hheecccC--ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999887 665543 332233334555555556777788888899999 665554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.002 Score=70.67 Aligned_cols=217 Identities=16% Similarity=0.079 Sum_probs=121.7
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|...+. ......+.....++.+++++..++..+++ ..|+.||..+|+........+ ....+.+.+++..
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCE
Confidence 467777765433 22333333345678999999888776654 369999999887543222222 2235677777777
Q ss_pred EEEec-cCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCe--EEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGS-HDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGR--LTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs-~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~--l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++++ .+| .||.+|..+++... ...+......+.+++++..+++.+ .+|. |+.++..+ +..... ....
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l-~~~~-- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLV-GGRG-- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEe-cCCC--
Confidence 76654 455 47888988776543 333334456777888777776655 3454 44555443 433221 1111
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC--CCCcEEEE
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ--ESGNLLWE 723 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~--~tG~~~w~ 723 (829)
..+.++++++.+++.+. ..++.+| .+|+....... .. ...+.... .+..|++++.+|....|.. .+|+.+-+
T Consensus 336 -~~~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~lt~~-~~-~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 -YSAQISADGKTLVMING-DNVVKQDLTSGSTEVLSST-FL-DESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred -CCccCCCCCCEEEEEcC-CCEEEEECCCCCeEEecCC-CC-CCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 23456778888877765 4577789 77765321111 11 11121111 2335666666765554442 45666555
Q ss_pred Ee
Q 003331 724 YS 725 (829)
Q Consensus 724 ~~ 725 (829)
+.
T Consensus 411 l~ 412 (429)
T PRK01742 411 LP 412 (429)
T ss_pred cc
Confidence 44
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0036 Score=68.80 Aligned_cols=219 Identities=13% Similarity=0.087 Sum_probs=120.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+..|....... ..........++.+++|++.|+..+.+ ..||.+|..+|+........+ ....+.+++++..|
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEE
Confidence 4555665433322 122222234578889998877766543 269999999887643322222 23456777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-C--CeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-S--GRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~--g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+|+..- ..........+.+++++..+++.+. + ..++.+|.++ |+... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~--g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS--GKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC--CCEEE-EecCCCCC
Confidence 55 44455 49999998887543 2223334456777777777766553 2 3588888876 54322 11111222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-C--eEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-G--SIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-g--~l~~~d~~tG~~ 720 (829)
..+.++++++.+++.+..+ .|+.+| .+|+.. ...... ....|.... .+..|++.+.+ | .++.++. +|+.
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC-CCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 3456777888887765533 467788 666542 221111 111222221 23345554433 3 3777775 5665
Q ss_pred EEEEe
Q 003331 721 LWEYS 725 (829)
Q Consensus 721 ~w~~~ 725 (829)
.....
T Consensus 429 ~~~l~ 433 (448)
T PRK04792 429 KARLP 433 (448)
T ss_pred eEECc
Confidence 54443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0011 Score=74.99 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=146.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--------------EEEE----EecCCeeeeeeeeecCCCEEEEeccCC
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--------------IYWT----FQTCGEVKCQPVVDAPRQLIWCGSHDH 580 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--------------~~w~----~~~~~~~~~~~~~~~~~~~i~~gs~~g 580 (829)
..+.-++.||.++++|+.|..|..|....+- ..|+ +..+..-.....+++++.++..++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 3455588999999999999988888865311 1232 222222222334455567777889999
Q ss_pred eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec------cCCcceeeeeeee
Q 003331 581 NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE------LEVPAFASLCITS 654 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~------~~~~~~~s~~~~~ 654 (829)
.+..||..+.+.+-++..+....-...+|+-+.++..-+.|+.|.+|+..+ -....... .....|.-+..++
T Consensus 152 sViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc--ceeeEeeccchhhCCCcceeeecccCC
Confidence 999999999988888877766666777888788888889999999998554 11111111 1122344456667
Q ss_pred cCCEEEEEe-eCCeE---EEEcCCCCEEEEeec-----CCce---eecCcccccCCC------------eEEEEeeCCeE
Q 003331 655 ANRHVICCL-VDGHV---VALDSSGSIIWRCRT-----GGPI---FAGPCTSFALPS------------QVLICSRNGSI 710 (829)
Q Consensus 655 ~~~~l~~~~-~~g~i---~~~d~~g~~~w~~~~-----~~~~---~~~~~~~~~~~~------------~i~~~t~~g~l 710 (829)
++.++.+.. .++.. -.++++ -|+... .+++ ...|.+.....+ .+-+|+.|+.|
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~---tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSl 306 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERG---TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSL 306 (942)
T ss_pred CcCeecchhhccCCcceeEEEecC---CceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccE
Confidence 777776542 23332 233321 144321 1111 111212111111 35577889999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccc
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGK 775 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~ 775 (829)
..|+...-+++.... .+......| .+..++|-.+++++.||+|..+..+....|.
T Consensus 307 SVW~T~~~RPl~vi~---~lf~~SI~D-------msWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 307 SVWNTALPRPLFVIH---NLFNKSIVD-------MSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred EEEecCCCCchhhhh---hhhcCceee-------eeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 999876666543211 111112222 2344568899999999999999988765554
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0012 Score=63.07 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=128.6
Q ss_pred EEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeecc--
Q 003331 523 AVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPC-- 598 (829)
Q Consensus 523 ~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~-- 598 (829)
...+| +.||.+. ..+.|-.+|+.||+..- +..+......-++.+.++..|+......|..+|.++++. .|....
T Consensus 68 apapd-G~VWft~qg~gaiGhLdP~tGev~~-ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~ 145 (353)
T COG4257 68 APAPD-GAVWFTAQGTGAIGHLDPATGEVET-YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH 145 (353)
T ss_pred ccCCC-CceEEecCccccceecCCCCCceEE-EecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccccc
Confidence 34445 4566554 45678899999999874 555443333334445567788876655899999988765 344433
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCce-EEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCC
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSG 675 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g 675 (829)
......++++++ .+.||+....|.--.+|+.+ +. .+|.... ......++.. -++.+|+.+. +..|..+| .+|
T Consensus 146 a~~nlet~vfD~-~G~lWFt~q~G~yGrLdPa~--~~i~vfpaPq-G~gpyGi~at-pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 146 ADANLETAVFDP-WGNLWFTGQIGAYGRLDPAR--NVISVFPAPQ-GGGPYGICAT-PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCCcccceeeCC-CccEEEeeccccceecCccc--CceeeeccCC-CCCCcceEEC-CCCcEEEEeccccceEEcccccC
Confidence 223455667776 78888887777555677765 32 2333221 1222333444 3566777654 45677788 666
Q ss_pred CEEEEeecCCc-eeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEE-EEecCCc--cccccccccccccccccccCC
Q 003331 676 SIIWRCRTGGP-IFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLW-EYSVGDP--ITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 676 ~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 750 (829)
... .+..... .-.+..+..+.-+.+|+.+. .+.++.+|+.+-. | ++.+++. -..+..+|+
T Consensus 221 ~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~------------ 285 (353)
T COG4257 221 HAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDR------------ 285 (353)
T ss_pred Ccc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeecc------------
Confidence 221 1211111 11111223344678998865 5689999988765 5 3343332 222233333
Q ss_pred CcEEEEEc-cCCcEEEEEeec
Q 003331 751 DRLVCICT-SSGSIHILRVNL 770 (829)
Q Consensus 751 ~~~l~~~~-~~G~l~~~d~~~ 770 (829)
.+.+|... ..|.|..||..+
T Consensus 286 ~grVW~sea~agai~rfdpet 306 (353)
T COG4257 286 HGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred CCcEEeeccccCceeecCccc
Confidence 56777743 345677777764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00091 Score=73.44 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=109.4
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+........+ ....+.++++++.+++. +.++ .||.+|..+|+... ..........+.+.+++..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~ 305 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKS 305 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCE
Confidence 469999999887654333332 33467888888877654 4444 69999999887643 2222233445677777777
Q ss_pred EEEecc-CC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSH-DH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~-~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
+++.+. +| .||.+|..+|+..... ..+.....+.++++++.|++.+.++ .|+.+|+.+ |+... .... ..
T Consensus 306 l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--g~~~~-Lt~~-~~ 380 (433)
T PRK04922 306 IYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--GSVRT-LTPG-SL 380 (433)
T ss_pred EEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--CCeEE-CCCC-CC
Confidence 776654 33 4999998887654332 2333344677777778887765433 588899876 55442 2211 12
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEcCCCCEEEEe
Q 003331 647 FASLCITSANRHVICCLVD---GHVVALDSSGSIIWRC 681 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d~~g~~~w~~ 681 (829)
..++.+.+++..+++.+.. +.|+.++.+|......
T Consensus 381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 381 DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 2345667777777666543 3466666445444443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00033 Score=67.96 Aligned_cols=189 Identities=15% Similarity=0.068 Sum_probs=124.0
Q ss_pred CeEEEEec-CCCcEEEEECCCCcEEEEEEcCC---ce--eeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEec--
Q 003331 486 DIYLFVGS-HSHKFICADAKRSSVLWEIKLEG---RI--ECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQT-- 556 (829)
Q Consensus 486 ~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~---~~--~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~-- 556 (829)
+..+|..| .+.-|..||+-||+.+-.+..-+ .+ ..+..+++||.+||+|- ...|..||. ..|+..-.+.+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh
Confidence 34455444 56679999999999887665322 11 23678899999999985 678999997 66764322211
Q ss_pred C-----Ceeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003331 557 C-----GEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 557 ~-----~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
. ..+.+...+.+ +.+.+.+|++...+-.+.-..+.++.....++.-+....+.++++.+|+|+. +-.|.+||+
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEee
Confidence 1 23344444444 3467888888876655555566777666555555566677777889999886 557999998
Q ss_pred cCCCceEEEeeccCCc---ceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CC
Q 003331 630 KALPFHTLWLHELEVP---AFASLCITSANRHVICCLVDGHVVALD-SS-GS 676 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~---~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~ 676 (829)
.. .+.++|....... -..-..+.+.+..+..|..+|.|.+|| ++ |.
T Consensus 281 R~-~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 281 RY-SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hh-ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 85 3667776654322 112223444566777777899999999 54 55
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0026 Score=69.87 Aligned_cols=175 Identities=15% Similarity=0.127 Sum_probs=105.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|...++.. .+........++.++++++.++..+.+ ..|+.+|..+|+........+ ....+.+.+++..+
T Consensus 171 ~l~~~d~~g~~~~-~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQ-TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCCCCCE-EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 5777776544333 222233334577888998888777654 479999999997654333332 23346677666666
Q ss_pred EE-eccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.+ ..||.+|..+++..... ........+.+..++..|++.+.. + .|+.++..+ ++.. .........
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--GEVR-RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCEE-EeecCCCCc
Confidence 54 3433 35999999887654332 222333455666666777665543 2 688888876 4432 222222223
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSI 677 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~ 677 (829)
..+.+.++++.+++.+.++ .|+.+| .++..
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE 358 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence 4556677788888877655 788888 66543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0019 Score=62.88 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=116.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecC---Cee--eeeeeeecCCCEEEEeccCCeEEEEEc-CCCeEEEee--ccC--
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTC---GEV--KCQPVVDAPRQLIWCGSHDHNLYALDF-RNYRCVYKL--PCG-- 599 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~---~~~--~~~~~~~~~~~~i~~gs~~g~l~~~d~-~tg~~~w~~--~~~-- 599 (829)
++.+.+.+.-|..||+-||+.+-.|..- +++ ..+..+.+++..||+| +...|..||. ..|...-.+ ...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccc
Confidence 4555666788999999999998776432 222 3455677788888887 4668999998 555432111 111
Q ss_pred ---CcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc--
Q 003331 600 ---GSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-- 672 (829)
Q Consensus 600 ---~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-- 672 (829)
..+++...+.+.+ +.+.+++....+-.++-.. +.++.........+.......+++.+|.|.. +..|.+||
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 2344444444433 4677777766555555444 5666655544444556677788999999875 56899999
Q ss_pred CCCCEEEEeec-----CCceeecCcccccCCC-eEEEEeeCCeEEEEeCCC-Cc
Q 003331 673 SSGSIIWRCRT-----GGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQES-GN 719 (829)
Q Consensus 673 ~~g~~~w~~~~-----~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~t-G~ 719 (829)
..+.++|.... ...|+.. .+..+ .+..|..+|.|..||.++ |.
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FD----ld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFD----LDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hccchhhhhhhhccCccceEEEe----cCCCCceeeccCCCccEEEEecCCCCC
Confidence 57777776542 2333332 22334 445556899999999887 66
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0015 Score=71.37 Aligned_cols=190 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred CeEEEEecC---CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCC--EEEEEEcCCCcEEEEEecCCe
Q 003331 486 DIYLFVGSH---SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 486 ~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+..|+..+. ...|+.+|..+|+..-.....+ ....+.+++|++.+++ .+.++ .||.+|..++... ....+..
T Consensus 207 G~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~ 284 (427)
T PRK02889 207 GTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLTQSSG 284 (427)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECCCCCC
Confidence 344444442 2359999999997653332332 3346788999887765 44454 5888898776643 2322333
Q ss_pred eeeeeeeecCCCEEEEeccC-C--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHD-H--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~-g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~ 633 (829)
....+.+.+++..|++.+.. + .||.++..+++..... ..+.....+.+++++..|++.+..+ .|+.+|..+
T Consensus 285 ~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-- 361 (427)
T PRK02889 285 IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-- 361 (427)
T ss_pred CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--
Confidence 34456777777777765543 2 5888887776543322 2233334577777778877666544 588999887
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEee
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 682 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~ 682 (829)
|+....... .....+.+.+++..+++.+.++ .+++++.+|.......
T Consensus 362 g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 362 GQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred CCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 554432221 1224566777888877776543 3555555565554443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00065 Score=71.97 Aligned_cols=235 Identities=12% Similarity=0.050 Sum_probs=126.5
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEE------EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--eccCC
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIY------WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGG 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~------w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~~~ 600 (829)
..+|++..+|+|..+|.+.-... .....+..........+..-.|+..+.|..+.+||.+++++.-. +-.+.
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~ 144 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHT 144 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccc
Confidence 46889999999999986543322 11112222222223334455677788899999999999887654 22222
Q ss_pred cccccceeecCCC-EEEEEecCCeEEEEEccCCC----------------c-----------eEEEeeccCCccee--ee
Q 003331 601 SIFGSPAIDEVHD-VLYVASTSGRLTAISVKALP----------------F-----------HTLWLHELEVPAFA--SL 650 (829)
Q Consensus 601 ~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~----------------g-----------~~~w~~~~~~~~~~--s~ 650 (829)
...-+.++...+. .+..|..||.+.+||..-.. + ...|... ...++. +.
T Consensus 145 ~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssvTv 223 (720)
T KOG0321|consen 145 GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSVTV 223 (720)
T ss_pred cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeeeEE
Confidence 2233344444334 44557789999999854311 0 0001000 001111 23
Q ss_pred eeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec------CCc---eeecCccccc-CCCeEEEEeeCCeEEEEeCCCC
Q 003331 651 CITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT------GGP---IFAGPCTSFA-LPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 651 ~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~------~~~---~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.+..++..|..++. |+.|.+|| .......+..- ... .....++..+ .+..+|+.+.|+.||+||..+-
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 44456667766655 89999999 54433332210 000 0111111222 3457999999999999997653
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..-=...+......+.++ -.....++..+..|+.+...|+|..++-
T Consensus 304 s~sP~~~~sg~~~~sf~v-------ks~lSpd~~~l~SgSsd~~ayiw~vs~~ 349 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYV-------KSELSPDDCSLLSGSSDEQAYIWVVSSP 349 (720)
T ss_pred CcCchhhccCcccceeee-------eeecCCCCceEeccCCCcceeeeeecCc
Confidence 221000011111111111 0112345889999999999999988753
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0037 Score=68.77 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=99.5
Q ss_pred EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.|+.+|...+... .+..+......|.+.+++..|++.+. +..|+.+|..+|+........+ ....+.+++++..|
T Consensus 183 ~l~~~d~dg~~~~-~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVR-YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG-MTFAPRFSPDGRKV 260 (435)
T ss_pred EEEEECCCCCCcE-EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC-cccCcEECCCCCEE
Confidence 6888886544443 33334445567788877777766543 3579999999987643322222 34467777777776
Q ss_pred EEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCcee
Q 003331 616 YVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIF 688 (829)
Q Consensus 616 ~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~ 688 (829)
++. +.+| .||.+|.++ +... ...........+.+++++..+++.+.. ..|+.+| .+++.. +........
T Consensus 261 a~~~~~~g~~~Iy~~d~~~--~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRS--GTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCC--CceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcc
Confidence 554 3333 488889886 5432 222222223456777788888777643 2588888 555432 222221111
Q ss_pred ecCcccccCCCeEEEEeeC---CeEEEEeCCCCcE
Q 003331 689 AGPCTSFALPSQVLICSRN---GSIYSFEQESGNL 720 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~ 720 (829)
..+.... .+..|++.+.+ ..|+.+|..++..
T Consensus 337 ~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 337 STPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE 370 (435)
T ss_pred cCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce
Confidence 2222221 23455555433 2588888766543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00095 Score=64.45 Aligned_cols=263 Identities=13% Similarity=0.049 Sum_probs=149.5
Q ss_pred EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc----CC----------CcEE-----
Q 003331 491 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY----LT----------GDIY----- 551 (829)
Q Consensus 491 igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~----~t----------G~~~----- 551 (829)
.++.|+.-..|...+|+++-++..+.+...+..+.+.+..+..++.|++-..|.. +. ++..
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 3456777778888899998888877776777888888777788877776555531 00 0000
Q ss_pred ---------------------EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003331 552 ---------------------WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 552 ---------------------w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
-.+..+..+....-+-..+..++++++|.....||.++|+++..+..+......++..+
T Consensus 245 e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp 324 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP 324 (481)
T ss_pred ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC
Confidence 00000111111111122456788899999999999999999987766655445555554
Q ss_pred CCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCcee
Q 003331 611 VHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIF 688 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~ 688 (829)
....++..+.|-++..||.... -..+-.++.+.....+..+ ..+.+++.|+.|.++.+|| .+- ..+-++.+..++-
T Consensus 325 tQrLVvTsSrDtTFRLWDFRea-I~sV~VFQGHtdtVTS~vF-~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~N 402 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREA-IQSVAVFQGHTDTVTSVVF-NTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPAN 402 (481)
T ss_pred cceEEEEeccCceeEeccchhh-cceeeeecccccceeEEEE-ecCCceeecCCCceEEEeeeccccCcceeeecCCccc
Confidence 3445556667777888886631 1112223333333333333 4567899999999999999 543 3444554444332
Q ss_pred ecCcccccCCCeE-EEEeeCCeEEEEeCCCCcEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 689 AGPCTSFALPSQV-LICSRNGSIYSFEQESGNLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 689 ~~~~~~~~~~~~i-~~~t~~g~l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.. ....++.| .+.-.+..|..||.. |..+-.++- .-.+.+..+..+.. -..++.+..|.
T Consensus 403 Rv---avs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp----------~cnLftcGFDR 468 (481)
T KOG0300|consen 403 RV---AVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHP----------ACNLFTCGFDR 468 (481)
T ss_pred ee---EeecCCceEEeccCCceEEEEecC-CCccccCCcccccccceeeeeeeccccCc----------ccccccccccc
Confidence 21 12223333 344445578888854 544333221 11233334443321 13456666677
Q ss_pred cEEEEEee
Q 003331 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.+.-|+.+
T Consensus 469 ~v~gW~in 476 (481)
T KOG0300|consen 469 MVAGWKIN 476 (481)
T ss_pred eeeeeEec
Confidence 77777654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0008 Score=67.19 Aligned_cols=194 Identities=10% Similarity=0.108 Sum_probs=125.8
Q ss_pred CcEEEEEEeCCEEEEEEcCCC-----cEEEEEecCCeeeeeeeeecCCCEEEEeccC--CeEEEEEcCCCeEEEeeccCC
Q 003331 528 FSQVVVGCYKGKIYFLDYLTG-----DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD--HNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~--g~l~~~d~~tg~~~w~~~~~~ 600 (829)
++.|..+..+|.+..+..+.+ +++|. .++..+...-........+.+|+.. ..+-.||.++.+.+|.-..-.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 346777777888888887733 34443 2333222111122234555567777 678999999999999865421
Q ss_pred --------ccc-ccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEE
Q 003331 601 --------SIF-GSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 601 --------~~~-~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
+++ ....+-+. ...+..+|..+.+..||+... -.+.-.+.......++....++++.||+|+..+.+.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLA 272 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhh
Confidence 111 22233332 346777888899999998861 245666666677778888888999999999999999
Q ss_pred EEc-CCCCEEEE-ee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 670 ALD-SSGSIIWR-CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 670 ~~d-~~g~~~w~-~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
.|| ..|++.-. +. ..+.+.+..+.+ ....+..++-|..|..+|.++.+++.+..
T Consensus 273 ~FD~r~~kl~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 273 KFDLRGGKLLGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eecccCceeeccccCCccCCcceEEEcC--CCceEEeeccceeEEEeecccchhhhhhh
Confidence 999 77777644 22 122232222211 12356677789999999999977765443
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0021 Score=70.66 Aligned_cols=179 Identities=12% Similarity=0.084 Sum_probs=106.6
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE-EEeCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV-GCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v-g~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+.+|..+|+........+ ....+.++++++.+++ .+.++ .||.+|..+|+..- ...+......+.+.+++..|
T Consensus 243 ~L~~~dl~tg~~~~lt~~~g-~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 243 EIFVQDIYTQVREKVTSFPG-INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred EEEEEECCCCCeEEecCCCC-CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEE
Confidence 69999999887643322222 2346788888887765 44444 49999998887643 22223334556777777777
Q ss_pred EEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++.+.. ..||.+|..+|+..... ..+.....+.++++++.+++.+.. + .|+.+|+++ |+..- .... ...
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~--g~~~~-lt~~-~~d 395 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET--GAMQV-LTST-RLD 395 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC--CCeEE-ccCC-CCC
Confidence 665432 35999999888754332 222223456777777788776543 2 577788776 54322 1111 112
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEee
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCR 682 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~ 682 (829)
.++.+++++..+++.+..+ .++.++.+|.......
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 3456677777777665433 2566665565544443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.5e-05 Score=77.35 Aligned_cols=192 Identities=15% Similarity=0.096 Sum_probs=133.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+..+.+|...|.|.++|..|+++..++.....+. .+.+.... .+++.....-+|.|| ..|..+........+..-
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~-Dv~~LHne-q~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rL- 215 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVR-DVTFLHNE-QFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARL- 215 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeehhhhhh-hhhhhcch-HHHHhhhhceEEEec-CCCcEEeehhhcCchhhh-
Confidence 46678889999999999999999988877655443 23333332 344444567789999 788887766544433211
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
-+-+..-.+..++..|.+...|..+|+++-.+..+......+...+-+..+-+|..+|.|..|.++. -+++-+.-+..
T Consensus 216 eFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s--kePLvKiLcH~ 293 (545)
T KOG1272|consen 216 EFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS--KEPLVKILCHR 293 (545)
T ss_pred cccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC--cchHHHHHhcC
Confidence 1222233455567778899999999999888777655554555555456677888899999999887 66666666666
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
....+.++...+.++.....|..+.+|| .+-..+..+.
T Consensus 294 g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 294 GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 6667888887777777777889999999 6544444443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0071 Score=66.58 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=118.9
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+..|...++.. ..........++.++++++.|+..+.+ ..|+.+|..+|+........+ ....+.+.+++..|
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEE
Confidence 3666776544432 222233334577888898887665543 369999999997654332222 23356777777766
Q ss_pred EE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---CeEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
++ .+.++ .||.+|..+++... ..........+.+++++..+++.+.. ..||.+++.+ |+... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~~~-lt~~~~~~ 333 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRAER-VTFVGNYN 333 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCEEE-eecCCCCc
Confidence 64 33344 69999999887543 22233344567777777777766542 3688888876 54322 11112222
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCC
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQE 716 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~ 716 (829)
..+.++++++.+++....+ .|+.+| .+|+...-.. ... ...+.... .+..+++.+.+ ..|+.++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~-~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-TSL-DESPSVAP-NGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC-CCC-CCCceECC-CCCEEEEEEecCCceEEEEEECC
Confidence 3456677888887766433 478888 6665432111 111 11222221 23345555433 347777764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.042 Score=59.95 Aligned_cols=263 Identities=14% Similarity=0.121 Sum_probs=151.3
Q ss_pred cCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC
Q 003331 493 SHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 493 s~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 570 (829)
..++.+..||..+ +........+........+.+++..++.++. ++.+..|+..+++.+..+..+........+.+.+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 4478899999876 5555555555554446777777777777764 9999999998888887776544433333444444
Q ss_pred CEEEEe-ccCCeEEEEEcCCCeEEE-eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCccee
Q 003331 571 QLIWCG-SHDHNLYALDFRNYRCVY-KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFA 648 (829)
Q Consensus 571 ~~i~~g-s~~g~l~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 648 (829)
..+.++ +.++.+..||..++.... .+..+.... ...+..++..+..++.++.+..|+...... .......+.....
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~ 288 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVL 288 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEE
Confidence 434444 788999999988787776 344333321 214555445677788899999999875211 1333322222233
Q ss_pred eeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee--cCCc-eeecCcccccCCCeEEEE-eeCCeEEEEeCCCCcEEEE
Q 003331 649 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR--TGGP-IFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~--~~~~-~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~tG~~~w~ 723 (829)
...+.+....+..++.++.+..++ .++....... .... +....+ . .....+..+ ..++.+..|+.........
T Consensus 289 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 366 (466)
T COG2319 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S-PDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366 (466)
T ss_pred EEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-C-CCCCEEEEeecCCCcEEeeecCCCceeEE
Confidence 344444566777777777777788 6665544433 2211 222211 1 111345555 4667777788776663332
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
........... ..........+..++.+.+|+....
T Consensus 367 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 367 LEGHSNVLSVS------------FSPDGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred ecCCceEEEEE------------ECCCCCEEEEecCCCceEEEecccC
Confidence 22222111100 0011112223567888999987754
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00063 Score=71.52 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=135.0
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..+..|..|+.+|.|..|...||+++|++.+.+.+. ++.+.+.... |.+...+..+..+|..-|..+-...+......
T Consensus 410 p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~-~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~ 488 (733)
T KOG0650|consen 410 PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIR-SVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLAS 488 (733)
T ss_pred CCcceeeecCCCCcEEEEEeecceEEEEEeecceeE-EEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhc
Confidence 356788889999999999999999999998887553 4555554432 33334455577777766633322111111111
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-----eEEEeeccCCcccccceeecCCCEEEEEec---CCeEEEEEccCCCc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-----RCVYKLPCGGSIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPF 634 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-----~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g 634 (829)
.|.-.. .++.+..|....- .+.-.+. ....+........++++.+... +..+++..+.. .
T Consensus 489 ~~~~~~---------p~~~~~~W~~~~~~e~~~~v~~~I~-~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK--~ 556 (733)
T KOG0650|consen 489 APNESE---------PDAAVVTWSRASLDELEKGVCIVIK-HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK--R 556 (733)
T ss_pred CCCccC---------CcccceeechhhhhhhccceEEEEe-cCCccceeeeecCCceEEEeccCCCcceEEEEeccc--c
Confidence 111110 1112222322110 0011111 1112233334444555544332 22355555443 2
Q ss_pred eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 635 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 635 ~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
+.+--+...........+.+..-++++++. ..|..|| ..+.++-+..++....++..+. ..+++|++|+.++.+..+
T Consensus 557 ~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih-p~GDnli~gs~d~k~~Wf 634 (733)
T KOG0650|consen 557 KSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH-PNGDNLILGSYDKKMCWF 634 (733)
T ss_pred cccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec-CCCCeEEEecCCCeeEEE
Confidence 221111111222234445556678888875 5788888 5555554444444444443322 246789999999999999
Q ss_pred eCCCCcEEEE-EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 714 EQESGNLLWE-YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 714 d~~tG~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
|.+-+..-|+ +..+........+.. .=.++++|+.||.++++-.
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~-----------ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHK-----------RYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhcc-----------ccceeeeecCCCcEEEEee
Confidence 9875543332 223333222222221 1346788888899888743
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.007 Score=66.19 Aligned_cols=211 Identities=12% Similarity=0.060 Sum_probs=116.5
Q ss_pred EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.|+.+|...+... .+..+......|.+++++..|.+.+. +..++.+|..+|+........+ ....+.+++++..|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~-~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-HNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC-CcCCeEECCCCCEE
Confidence 6888885544332 23334445667888887776665432 3469999999887654333322 23457788877777
Q ss_pred EEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCcee
Q 003331 616 YVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIF 688 (829)
Q Consensus 616 ~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~ 688 (829)
++. +.+| .|+.+|.++ |+... ..........+.++++++.+++.+..+ .|+.+| .+|+.. +....+...
T Consensus 258 a~~~~~~g~~~I~~~d~~t--g~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLAS--GQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCC--CCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 765 3344 599999886 54432 222222335667778888887766543 577888 555443 222222111
Q ss_pred ecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc---
Q 003331 689 AGPCTSFALPSQVLICSRN---GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS--- 762 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~--- 762 (829)
..+.... .+..|++.+.+ ..|+.+|..+|+..- +. .......+. ..+++..+++.+.++.
T Consensus 334 ~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt-~~~~~~~p~-----------~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 334 QDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQV-LT-DTFLDETPS-----------IAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred cCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE-eC-CCCCCCCce-----------ECCCCCEEEEEEcCCCceE
Confidence 1222221 13345554432 358889998887542 11 111111111 2334777777776664
Q ss_pred EEEEEee
Q 003331 763 IHILRVN 769 (829)
Q Consensus 763 l~~~d~~ 769 (829)
+++++.+
T Consensus 400 l~~~~~~ 406 (429)
T PRK03629 400 LNLVSTD 406 (429)
T ss_pred EEEEECC
Confidence 5666654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=72.01 Aligned_cols=183 Identities=10% Similarity=0.051 Sum_probs=117.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-Ceeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPV 565 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~ 565 (829)
-++..|..++.|..||++...+....+.+...+..+.+...+.+|..++..|.|.....+|+..--.|..+ +...--.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 46777778889999999844333333334333334444445567888888899999999998776666554 33221122
Q ss_pred eec-CCCEEEEeccCCeEEEEEcCCCeEEEeec-cCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeecc
Q 003331 566 VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLP-CGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 566 ~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+.. ..-.+.+++++|.+..||.....++..+. .+......+++.+.+..|+ ..+.|..|+.||... -+..-....
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s--~~s~~~l~y 249 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS--QASTDRLTY 249 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc--ccccceeee
Confidence 222 23456678899999999977666654432 2344455566666455444 455688999999764 222222222
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
. ..+.+.++..++-++.+|+..|.|+.||
T Consensus 250 ~-~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 250 S-HPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred c-CCcceeeecCCceEEEeecCCceEEEEe
Confidence 2 2346778888888899999999999999
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0012 Score=63.87 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=145.1
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-----------C---CeE-------
Q 003331 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-----------N---YRC------- 592 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-----------t---g~~------- 592 (829)
.+.|.+-..|..++|+++-+|..+.....+..+...+..+.+++.|+.-..|... + ++.
T Consensus 166 ASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 166 ASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred cccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 3456777888889999988887665444455566666777788877765555311 0 000
Q ss_pred -------------------EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeee
Q 003331 593 -------------------VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCIT 653 (829)
Q Consensus 593 -------------------~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~ 653 (829)
+-.+..+..+....-.-..++.++.+++|.+-..||.++ |+.+.....+.......+-.
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET--GEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc--CceeccccCcchhccccccC
Confidence 000000000111011111245567788888888899888 87776554443333333333
Q ss_pred ecCCEEEEEeeCCeEEEEc-CCC-CEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc-EEEEEecCCcc
Q 003331 654 SANRHVICCLVDGHVVALD-SSG-SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-LLWEYSVGDPI 730 (829)
Q Consensus 654 ~~~~~l~~~~~~g~i~~~d-~~g-~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~-~~w~~~~~~~~ 730 (829)
+....++..+.|.++..|| ... .-+-.++.......+ +.+..++.+..|+.|.+|..||.++-+ .+-++...+++
T Consensus 324 ptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS--~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~ 401 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS--VVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPA 401 (481)
T ss_pred CcceEEEEeccCceeEeccchhhcceeeeecccccceeE--EEEecCCceeecCCCceEEEeeeccccCcceeeecCCcc
Confidence 4455666667777777777 421 111122221111111 123447789999999999999987643 35555555544
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE----CCE
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI----GGR 806 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~----~~~ 806 (829)
....... ....|.+.-++..|.+||.+.......-.+. -.-.-.++.+.... -..
T Consensus 402 NRvavs~------------g~~iIAiPhDNRqvRlfDlnG~RlaRlPrts---------RqgHrRMV~c~AW~eehp~cn 460 (481)
T KOG0300|consen 402 NRVAVSK------------GHPIIAIPHDNRQVRLFDLNGNRLARLPRTS---------RQGHRRMVTCCAWLEEHPACN 460 (481)
T ss_pred ceeEeec------------CCceEEeccCCceEEEEecCCCccccCCccc---------ccccceeeeeeeccccCcccc
Confidence 3322111 1447778888888999998744221110000 00011122221111 157
Q ss_pred EEEeeeCCeEEEEecccc
Q 003331 807 VFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 807 l~vg~~~g~l~~~d~~tg 824 (829)
||.+..|..+..|+.++-
T Consensus 461 LftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 461 LFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccceeeeeEeccc
Confidence 888888888888887654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.004 Score=70.57 Aligned_cols=151 Identities=13% Similarity=0.002 Sum_probs=97.1
Q ss_pred eceEEeeCCcEEEEEE--eCCEEEEEEcCCC------------cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEE
Q 003331 520 CSAAVLADFSQVVVGC--YKGKIYFLDYLTG------------DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYAL 585 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~--~dg~l~~~d~~tG------------~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~ 585 (829)
.++.+.+++..+..|+ .|+++.+|+.+-= +.+-+...+.....+.-+.+++.++++|++|..+..|
T Consensus 17 fSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW 96 (942)
T KOG0973|consen 17 FSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIW 96 (942)
T ss_pred EEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEe
Confidence 3556666666666666 5666666653210 0111112222223333467788899999999988888
Q ss_pred EcCC---Ce-----------EEEe----eccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce
Q 003331 586 DFRN---YR-----------CVYK----LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 586 d~~t---g~-----------~~w~----~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
.... +. ..|+ +..+..-......++++..+..++.|+.|..||..+ ++.+-....+....
T Consensus 97 ~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~V 174 (942)
T KOG0973|consen 97 ERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLV 174 (942)
T ss_pred eecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc--ceeeeeeecccccc
Confidence 8662 11 1233 222334445556666567777888999999999888 76666666555555
Q ss_pred eeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 648 ASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
-...+.+.+.++..-+.|..|.+|+
T Consensus 175 KGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 175 KGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred cceEECCccCeeeeecCCceEEEEE
Confidence 5667777888888889999999998
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=79.05 Aligned_cols=147 Identities=12% Similarity=0.038 Sum_probs=94.6
Q ss_pred CCeEEEEecCCCcEEEEECCC---CcEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHSHKFICADAKR---SSVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.++.|...+.+|.|.+||+.. .+.+-.|.-+.+......+.. .-..|+.|+.||.|.+||.+..+-.-++....+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 466788888899999999865 333334455555544555543 3357889999999999998877766555443322
Q ss_pred eeeeeeec-CCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 561 KCQPVVDA-PRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 561 ~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.--..+.+ .+..+..+..+|.|..||+..- ++..++..+.......-..++...|..|+.|+.+.+||..+
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 21222333 2445556667788999998642 23333444444444455566566777788899999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0041 Score=68.29 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=106.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeC--CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYK--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+......... ...++.++++++.+++. +.+ ..||.+|..+++..... ........+.+.+++..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~-~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG-MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCE
Confidence 479999999987654333332 23357788888777654 333 35999998888654322 22223334556666666
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++.+.. ..||.+|..+++... ....+.....+.+++++..+++.+.++ .|+.+|+.+ +....... ...
T Consensus 292 l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--~~~~~l~~--~~~ 366 (417)
T TIGR02800 292 IAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--GGERVLTD--TGL 366 (417)
T ss_pred EEEEECCCCCceEEEEECCCCCEEE-eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--CCeEEccC--CCC
Confidence 7665433 269999988876543 222333445667777677888777655 788899876 43322111 111
Q ss_pred eeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEe
Q 003331 647 FASLCITSANRHVICCLVDG---HVVALDSSGSIIWRC 681 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~ 681 (829)
...+.+.++++.+++.+.++ .++.++.+|+.....
T Consensus 367 ~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 367 DESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 23445666777777766543 233334566655444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0083 Score=65.77 Aligned_cols=207 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
..|+.+|.. |........+......|.+++++..|++.+.+ ..|+.||..+|+........+ ....+.+++++..
T Consensus 184 ~~i~i~d~d-g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYD-GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCC-CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeECCCCCE
Confidence 578888864 43333333344455678888887777766543 369999999886543332222 2335777777777
Q ss_pred EEEEe-cCCe--EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CC--eEEEEc-CCCCEEEEeecCCce
Q 003331 615 LYVAS-TSGR--LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DG--HVVALD-SSGSIIWRCRTGGPI 687 (829)
Q Consensus 615 l~v~t-~~g~--l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g--~i~~~d-~~g~~~w~~~~~~~~ 687 (829)
|+++. .+|. |+.+|.++ ++.. ...........+.+.+++..+++.+. +| .|+.++ ..+.... .....
T Consensus 262 La~~~~~~g~~~Iy~~d~~~--~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~-l~~~~-- 335 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANG--GTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL-VGGRG-- 335 (429)
T ss_pred EEEEEecCCcEEEEEEECCC--CCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ecCCC--
Confidence 77654 4553 67777765 4432 22222223356677778877776653 34 355555 3333321 11111
Q ss_pred eecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 688 FAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 688 ~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
.. +.... .+..|++.+.+ .++.+|..+|+....... .....+ +..+++..+++++.+|...+|+
T Consensus 336 ~~-~~~Sp-DG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~--~~~~~~-----------~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 336 YS-AQISA-DGKTLVMINGD-NVVKQDLTSGSTEVLSST--FLDESP-----------SISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CC-ccCCC-CCCEEEEEcCC-CEEEEECCCCCeEEecCC--CCCCCc-----------eECCCCCEEEEEEcCCCceEEE
Confidence 11 11111 23456666554 588899998876422111 111111 1233477888888888776665
Q ss_pred e
Q 003331 768 V 768 (829)
Q Consensus 768 ~ 768 (829)
.
T Consensus 400 ~ 400 (429)
T PRK01742 400 L 400 (429)
T ss_pred E
Confidence 4
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0043 Score=68.14 Aligned_cols=261 Identities=11% Similarity=0.066 Sum_probs=125.7
Q ss_pred cEEEEECCCC-cEEEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE--EEEEec----CCeeeeeeeeec
Q 003331 497 KFICADAKRS-SVLWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI--YWTFQT----CGEVKCQPVVDA 568 (829)
Q Consensus 497 ~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~----~~~~~~~~~~~~ 568 (829)
.++.||.++- ++.-.+.....+. +..+.+ +...++.|+++|.|..||...+.. .+.... +.......+...
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~-~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVT-CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred eEEEEecCCCCCceEEEecCCcee-EEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 5777776553 3333344444332 333433 455788899999999999887765 443322 111111222221
Q ss_pred --CCCEEEEeccCCeEEEEEcCCCeE------EEeec-cC----C--cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 569 --PRQLIWCGSHDHNLYALDFRNYRC------VYKLP-CG----G--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 569 --~~~~i~~gs~~g~l~~~d~~tg~~------~w~~~-~~----~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+..++.++.||.|..|+.+.-.. .-... .+ . ...+.-....+....++||..|.|+.-+....+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 224488888899999997653211 00000 00 0 011111122234778999999998875544311
Q ss_pred ceE------EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEeecCCc-eeecCcccccCCCeEEEE
Q 003331 634 FHT------LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCRTGGP-IFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 634 g~~------~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~ 704 (829)
-.. .-.+..+.....+....+-...++..+.|-++..|. . .-.++..+..... ++... .+......++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va-WSptrpavF~~~ 460 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA-WSPTRPAVFATV 460 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE-EcCcCceEEEEE
Confidence 111 101111111112222222233344444466676666 2 3333322221111 11111 111112235556
Q ss_pred eeCCeEEEEeCCCCc--EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 705 SRNGSIYSFEQESGN--LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 705 t~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..+|.|..||..... +.-+.+....+. ........+..+.+|...|.+++++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l-----------~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCSPAL-----------TRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhccccCCccccccccccc-----------ceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 668999999975322 222222221111 1111233478899999999999998863
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.007 Score=61.82 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=112.4
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee--c
Q 003331 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--P 597 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~ 597 (829)
+++..++.+ .+|+.-..+.|+.||+.+|+.. .+..++.+.+...++ .++.|++.. ..++.++.+++..+-.+ .
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence 344444444 4666667889999999888554 233444443333333 455665553 34667776666552221 1
Q ss_pred cCC---cccccceeecCCCEEEEEecC------------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003331 598 CGG---SIFGSPAIDEVHDVLYVASTS------------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 598 ~~~---~~~~~~~~~~~~~~l~v~t~~------------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
..+ ...+...++. ++.+|+++.. |.||.+++. |...-.....-......+++++++.+|+.
T Consensus 105 ~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 105 EDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 111 1223334444 5889998766 457777764 22222221111122456788888888887
Q ss_pred ee-CCeEEEEc-C--CCCEE----EEeecCCceeecCcccccCCCeEEEEeeCC--eEEEEeCCCCcEEEEEecCCcccc
Q 003331 663 LV-DGHVVALD-S--SGSII----WRCRTGGPIFAGPCTSFALPSQVLICSRNG--SIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 663 ~~-~g~i~~~d-~--~g~~~----w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
.. .+.++.++ . +|.+- +......+ -...-...+.+|.+|+....+ .|.+|+++ |+++-.+..+.....
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~-G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEP-GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCC-CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 54 47777776 3 23221 11111000 001112356789999765553 89999988 999988888754333
Q ss_pred c
Q 003331 733 S 733 (829)
Q Consensus 733 ~ 733 (829)
.
T Consensus 259 ~ 259 (307)
T COG3386 259 N 259 (307)
T ss_pred c
Confidence 3
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0026 Score=72.75 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=135.4
Q ss_pred CCCeEEEEecCCCcEEEEECCC--Cc---EEE--EEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC--CcEEEE
Q 003331 484 DSDIYLFVGSHSHKFICADAKR--SS---VLW--EIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT--GDIYWT 553 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~t--g~---~~w--~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t--G~~~w~ 553 (829)
++......||.||.|.+||... |+ .+- ++. .+.++. .......+..+.+++.||.|..++..- ++.+--
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~-~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVE-KVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceE-EEEeccCCCeEEEEcCCCeEEEEEcccccccccee
Confidence 3446777899999999999753 11 111 122 223332 334445667888999999887776543 221110
Q ss_pred -------EecCCeeeeeeee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecCCCEEEEEecCC
Q 003331 554 -------FQTCGEVKCQPVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 554 -------~~~~~~~~~~~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
....+.+...-.+ ....-.+..++..+.+..||..+..-.|+.+.. ....++.++++....+.+||..|
T Consensus 1138 ~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1138 TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 0111222221111 112225666778889999999998889987653 34667788888677888999999
Q ss_pred eEEEEEccCCCceEEEeeccCCcce-eeeeeeec-CCE-EEEEe-eCCeEEEEc-CCCCE---EEEeecCCceee--cC-
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAF-ASLCITSA-NRH-VICCL-VDGHVVALD-SSGSI---IWRCRTGGPIFA--GP- 691 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~-~~~-l~~~~-~~g~i~~~d-~~g~~---~w~~~~~~~~~~--~~- 691 (829)
.+.+||+.=..--..|.+....+.. ...++... ... +..+. ..+.+..|+ .+|.. +|.- .+.+.++ .|
T Consensus 1218 ~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls~~~Ps 1296 (1431)
T KOG1240|consen 1218 QLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILSYALPS 1296 (1431)
T ss_pred eEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchhhhccc
Confidence 9999998752223456665544332 11111111 122 22333 456788888 66643 3433 1111110 01
Q ss_pred -------------cccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 692 -------------CTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 692 -------------~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+.....++.++.|..|..|..||..+.+.
T Consensus 1297 ~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1297 NDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred ccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence 11133456788888899999999776544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.026 Score=68.47 Aligned_cols=231 Identities=12% Similarity=0.152 Sum_probs=128.7
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCc--------------eeeceEEeeCCcEEEEEEe-CCEEEEEEcCCC
Q 003331 485 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGR--------------IECSAAVLADFSQVVVGCY-KGKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~--------------~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG 548 (829)
.++.||+.. .+++|..+|.. |+.+-.+...+. .-...++..+++.||+... ++.|..+|..++
T Consensus 578 ~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~ 656 (1057)
T PLN02919 578 LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNE 656 (1057)
T ss_pred CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCC
Confidence 467788875 46789999975 555433322100 0123455556677888754 467888998777
Q ss_pred cEEEEEecCC--------------e-e--eeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeecc------CC----
Q 003331 549 DIYWTFQTCG--------------E-V--KCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPC------GG---- 600 (829)
Q Consensus 549 ~~~w~~~~~~--------------~-~--~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~------~~---- 600 (829)
.+.- +...+ . . .....+++.++.+|+.. .++.|+.||..+|...-.... .+
T Consensus 657 ~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~ 735 (1057)
T PLN02919 657 TVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGT 735 (1057)
T ss_pred EEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccc
Confidence 6532 21100 0 0 11234555567788764 467899999988765321100 00
Q ss_pred ----cccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeecc-----------C---C-------cceeeeeeee
Q 003331 601 ----SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHEL-----------E---V-------PAFASLCITS 654 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~-----------~---~-------~~~~s~~~~~ 654 (829)
..-..++++++++.+|++.. ++.|..||+++ +...+.... + . .......+..
T Consensus 736 ~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t--g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~ 813 (1057)
T PLN02919 736 STSFAQPSGISLSPDLKELYIADSESSSIRALDLKT--GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK 813 (1057)
T ss_pred cccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC--CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC
Confidence 00112456666677887754 57899999886 543322110 0 0 0012233443
Q ss_pred cCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCc----------eeecCc-ccccCCCeEEEEe-eCCeEEEEeCCCCcE
Q 003331 655 ANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGP----------IFAGPC-TSFALPSQVLICS-RNGSIYSFEQESGNL 720 (829)
Q Consensus 655 ~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~----------~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~tG~~ 720 (829)
+ +.+|++. .++.|..+| .++.+......+.. .+..|. +..+.+|.+|+.. .++.|..||..+++.
T Consensus 814 d-G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 814 D-GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred C-CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 3 4566654 567899999 66665543322211 112221 2344567788874 577899999998875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.046 Score=59.66 Aligned_cols=267 Identities=16% Similarity=0.152 Sum_probs=151.7
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEE-EEecCCeee
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYW-TFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w-~~~~~~~~~ 561 (829)
.+..++.++. ++.+..|+..+++....+..+........+.+++..+.++ +.|+.+..||..++.... .+..+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 245 (466)
T COG2319 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245 (466)
T ss_pred CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce
Confidence 3446666664 8999999998888877776655544555666665535555 778999999988888776 344333322
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+...+..+..++.++.++.||...... ......+........+.++...+..++.++.+..|+..+ .......
T Consensus 246 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~ 322 (466)
T COG2319 246 -VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--GKLLSSL 322 (466)
T ss_pred -eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--CceEEEe
Confidence 224555556777888999999999886654 444422222233334444456677777777778887765 4433333
Q ss_pred c--cCCcceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEE-EEeeCCeEEEEeC
Q 003331 641 E--LEVPAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVL-ICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~--~~~~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~-~~t~~g~l~~~d~ 715 (829)
. ..........+..+...+..+ ..++.+..++ ..............+...... . +..+. .+..++.+..|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~ 399 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFS-P--DGRVVSSGSTDGTVRLWDL 399 (466)
T ss_pred eecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEEC-C--CCCEEEEecCCCceEEEec
Confidence 2 222222333331112455555 4566677777 444433333222221111111 1 11222 2567788999998
Q ss_pred CCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 716 ESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 716 ~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
............ ..+...... ..+..+..+..++.+..|+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 400 STGSLLRNLDGHTSRVTSLDFS------------PDGKSLASGSSDNTIRLWDLK 442 (466)
T ss_pred ccCeeeeeccCCCCcEEEEEEC------------CCCcEEEEecCCCcEEEEecc
Confidence 887776554443 222211111 124555556778888888766
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.9e-05 Score=52.25 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=28.0
Q ss_pred cccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCC
Q 003331 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKR 505 (829)
Q Consensus 463 ~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~t 505 (829)
+++|+++++..+.++|++ .++.||+++.+|.|+++|++|
T Consensus 2 ~~~W~~~~~~~~~~~~~v----~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAV----AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EEEEEE-SS---S--EE----CTSEEEEE-TTSEEEEEETT-
T ss_pred ceeEEEECCCCcCcCCEE----ECCEEEEEcCCCEEEEEeCCC
Confidence 468999999999999998 789999999999999999875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0056 Score=67.37 Aligned_cols=175 Identities=13% Similarity=0.181 Sum_probs=104.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|..+|+........+ ....+.++++++.+++.. .++ .||.+|..+|+... ..........+.+.+++..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~ 300 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRT 300 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCE
Confidence 369999999887654322222 233578888888776543 333 69999999887643 2222333445667777777
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|++.+.. ..||.+|..+|+..... ..+.....+.++++++.|++.+.. + .|+.+|+.+ |+....... ..
T Consensus 301 i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--g~~~~lt~~--~~ 375 (430)
T PRK00178 301 LYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--GSVRILTDT--SL 375 (430)
T ss_pred EEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC--CCEEEccCC--CC
Confidence 7766542 36999999888754322 223333456677777787776543 2 478888876 543322111 11
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEcCCCCE
Q 003331 647 FASLCITSANRHVICCLVD---GHVVALDSSGSI 677 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d~~g~~ 677 (829)
...+.+++++..+++.+.. ..++.++.+|..
T Consensus 376 ~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~ 409 (430)
T PRK00178 376 DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV 409 (430)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 2345666777777766543 235556644433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.003 Score=60.71 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=129.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceE--EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA--VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~--~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.|....+|.|+.+.+||.+|-+..-.|+.++.++..+. ++..--.|.+|+.+-.|..-|.++|..-.+...+..-.-
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 566666778899999999999998888888887654221 111223577788888899999999998877765543222
Q ss_pred eeeeecC-CCEEEEeccCCeEEEEEcCCC-eEEEeeccC--------------CcccccceeecCCCEEEEEecCCeEEE
Q 003331 563 QPVVDAP-RQLIWCGSHDHNLYALDFRNY-RCVYKLPCG--------------GSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 563 ~~~~~~~-~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~--------------~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
+.-+.+. +-.+++|+.||.+..||+..- .+....+.+ ...+...+...++..++..+.+..+..
T Consensus 193 aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 193 AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 2333333 345778999999999998642 222222111 112223344444555666666677888
Q ss_pred EEccCCCceEEEe-e-cc-----CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC
Q 003331 627 ISVKALPFHTLWL-H-EL-----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP 698 (829)
Q Consensus 627 ~~~~~~~g~~~w~-~-~~-----~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~ 698 (829)
|+..+ |+---. + +. ..+.+. .. +.+.+.+..--.+++++.++ -.|..+-..+....-.... .....-
T Consensus 273 wn~~~--G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~-~~~~~f 347 (397)
T KOG4283|consen 273 WNMES--GRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCA-AYRPDF 347 (397)
T ss_pred eeccc--CcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEE-eecCch
Confidence 88766 431110 0 00 001111 11 11222222223458888898 7787765444432211111 111112
Q ss_pred CeEEEEeeCCeEEEEeC
Q 003331 699 SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~ 715 (829)
...+.|..|+.++.|.+
T Consensus 348 q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 348 EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred hhhhccccCCccccccc
Confidence 35778888888888865
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0084 Score=58.74 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=73.7
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeecc---CCccccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPC---GGSIFGS 605 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---~~~~~~~ 605 (829)
.+++|++-|.|+.+|..+++....+..++......-+. ...+.|+.+|.|..|+.||++++.++-.+-. +..-.-+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 57777788999999999999887776655322222222 2346889999999999999999999877643 1222334
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.-++.+++++..++.|..|..|+++.
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecCh
Confidence 44555667888888899999998774
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.6e-05 Score=50.17 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=28.0
Q ss_pred CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 548 GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 548 G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
|+++|+++.++.+..+|++.+ +.||+++.+|.++++|++|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~--g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAG--GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECT--SEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEEC--CEEEEEcCCCEEEEEeCCC
Confidence 789999999988888888764 8999999999999999875
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0034 Score=66.40 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=114.1
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeece-----------------------EEeeCCcEEEEEEeCCEEEEEE
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA-----------------------AVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~-----------------------~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+....+.+|.+..||..++++.-.|....+...+. ..+.+-..++.|+..|.+..|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 34445678899999998888765553221110000 1122334577899999999999
Q ss_pred cCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC
Q 003331 545 YLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 545 ~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
...|++.|++.++. ..+........-+.||.++.|+.+..|+.++++.+..........++.++.++++.+.+++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--c
Confidence 99999999987543 2233333344567899999999999999999998877777777888889988767777765 5
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeee
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
.|-.||.++ ++.+-++..+.....+..+
T Consensus 165 ~ik~~~~~~--kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 165 QIKVLDIET--KEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred eEEEEEccC--ceEEEEecCCCcceEEEEE
Confidence 699999998 8888877766554444443
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.3e-05 Score=49.75 Aligned_cols=36 Identities=42% Similarity=0.696 Sum_probs=31.0
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+.+|+++.+|.|+++|++||+++|+++....+.+.|
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p 36 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSP 36 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCB
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCc
Confidence 368999999999999999999999999877665544
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0073 Score=60.59 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=105.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEE-------EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w-------~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
.+..|..||.|..+..|..-.+-... .+..+.+-...+...+ ..+.+...+.|..+..||..||+.+-+...
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~h 172 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDH 172 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCC
Confidence 46678888999999999854432221 1222222222222222 123466667799999999999999888774
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec----CCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST----SGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~----~g~l~~~~~~~ 631 (829)
++. ..+..+..++..+.+.+.|..|+.||+.+|++++.-..+...-.. .++-. ++.++.... +.++-.||+++
T Consensus 173 pd~-i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 173 PDM-VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCe-EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeeeccccccccceeccCccc
Confidence 444 445566667788888899999999999999999987443322221 12222 233443332 33455566554
Q ss_pred CCceEEEeeccCC-cceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003331 632 LPFHTLWLHELEV-PAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 632 ~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
.. +.+-..++.. +...-+-..++.+.+|++.. |+.|..|.
T Consensus 251 l~-eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 251 LE-EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cc-CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 10 1111111111 11122334445667776654 66676666
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.028 Score=51.86 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=122.0
Q ss_pred CeEEEEecCCCcEEEE--ECCCCcEE---EEEEcCCceeeceEEeeC---CcEEEE--EEeCCEEEEEEcCCCcEEEEEe
Q 003331 486 DIYLFVGSHSHKFICA--DAKRSSVL---WEIKLEGRIECSAAVLAD---FSQVVV--GCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~--d~~tg~~~---w~~~~~~~~~~~~~~~~~---~~~v~v--g~~dg~l~~~d~~tG~~~w~~~ 555 (829)
+..|..|+.|..|..+ |..|.+.. -+++.++...-..++.++ ++.+.+ |..|..||.-|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 5567778888766544 44443211 234555543334444432 233333 3446788988988888776655
Q ss_pred cCCe-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CC---cccccceeecCCCEEEEEecCCeEEEE
Q 003331 556 TCGE-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GG---SIFGSPAIDEVHDVLYVASTSGRLTAI 627 (829)
Q Consensus 556 ~~~~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~ 627 (829)
.+.. +.. .+.-.+-++..|+.|..++.||..-..++..... ++ ....+.++++.+..+..|-.+.....|
T Consensus 181 ghtghila--lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 181 GHTGHILA--LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CCcccEEE--EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 4332 222 2232345666789999999999887666665433 12 344556677756666677778889999
Q ss_pred EccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEE
Q 003331 628 SVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSII 678 (829)
Q Consensus 628 ~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~ 678 (829)
|+.. |..+.++........+..+++..-++..++++..|..-|-.|.+.
T Consensus 259 dirg--~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 259 DIRG--GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred EeeC--CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh
Confidence 9997 888888877666666777777777888999998888877556554
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.023 Score=63.15 Aligned_cols=271 Identities=14% Similarity=0.176 Sum_probs=148.6
Q ss_pred ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCC---cEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 476 ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADF---SQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 476 ~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~---~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
-+|.+. +.+..++++.+. ..|..|...||..+-.+..+.....+..+.... ..+|+.+.+|.|..||-..++++.
T Consensus 19 ~~~avf-SnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 19 KSPAVF-SNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred eccccc-ccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 344443 334556666555 469999999998876544333222233332221 467899999999999999999999
Q ss_pred EEecCCeeeee---eeeecCCCEEEEeccCC-eEEEEEcCCCeEEEeeccC------C-----cccccceeecCCCEEEE
Q 003331 553 TFQTCGEVKCQ---PVVDAPRQLIWCGSHDH-NLYALDFRNYRCVYKLPCG------G-----SIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 553 ~~~~~~~~~~~---~~~~~~~~~i~~gs~~g-~l~~~d~~tg~~~w~~~~~------~-----~~~~~~~~~~~~~~l~v 617 (829)
++..+..+... |...+....+|.+..+. .++....+..+....+... + ...-.++.+...+.+..
T Consensus 97 t~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 97 TFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 88776544322 22222223344443332 2222222222221111110 0 00112333333343333
Q ss_pred EecCCeEEEEEccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCC---------CEEEEee
Q 003331 618 ASTSGRLTAISVKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALDSSG---------SIIWRCR 682 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g---------~~~w~~~ 682 (829)
...+-.++.|+..+ +. |.... +.-.+....+++.+..+..+..+|.|..|...| .+.|+..
T Consensus 177 i~~~~~~~~~~v~~--~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPK--HT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEeeeEEEEEecc--cc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 33344577777665 22 22211 111124456777788888888899999887222 1235532
Q ss_pred -cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 683 -TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 -~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+..-.++. .+..+|.|...|-+..|...|++...--..++++....... ++.+..+...|.
T Consensus 253 ~V~~L~fS~------~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~------------ds~~~sl~~~DN 314 (792)
T KOG1963|consen 253 EVNSLSFSS------DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSP------------DSDLYSLVLEDN 314 (792)
T ss_pred ccceeEEec------CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcC------------CCCeEEEEecCc
Confidence 11112222 35689999999999999999988543333445443332222 266677777888
Q ss_pred cEEEEEeec
Q 003331 762 SIHILRVNL 770 (829)
Q Consensus 762 ~l~~~d~~~ 770 (829)
.|..+...+
T Consensus 315 qI~li~~~d 323 (792)
T KOG1963|consen 315 QIHLIKASD 323 (792)
T ss_pred eEEEEeccc
Confidence 898887643
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=72.49 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=120.1
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
..++..+++|+..|+|.++|-.|+++...+.....+...-.+.. ...+.......+|+||-+ |..+.........
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHn--eq~~AVAQK~y~yvYD~~---GtElHClk~~~~v 212 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHN--EQFFAVAQKKYVYVYDNN---GTELHCLKRHIRV 212 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcc--hHHHHhhhhceEEEecCC---CcEEeehhhcCch
Confidence 33567788899999999999999998887766444333222322 334444455668888855 6666555433222
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
....+.+..=.+..++..|.+...| ++|+++-.+.++..-..... ..-.+..+-+|..+|.|..|.+...+++-++.
T Consensus 213 -~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~-qNP~NaVih~GhsnGtVSlWSP~skePLvKiL 290 (545)
T KOG1272|consen 213 -ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK-QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL 290 (545)
T ss_pred -hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh-cCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence 1222333333444556678888888 99998876665432211111 01124567788889999999999888877666
Q ss_pred cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 726 VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
++....++..++.. +.+++....|..+.+||...
T Consensus 291 cH~g~V~siAv~~~-----------G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRG-----------GRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hcCCCcceEEECCC-----------CcEEeecccccceeEeeecc
Confidence 55554455555542 78888888999999999974
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0074 Score=56.65 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=123.4
Q ss_pred CCeEEEEecCCCcEEEEECCCC---cEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEe----
Q 003331 485 SDIYLFVGSHSHKFICADAKRS---SVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---- 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~---- 555 (829)
.+.+|...+.|+.|..|..... +.+-++..+......+.... .|+.|...++||.+..|.-++| .|+..
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~ 99 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHA 99 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhh
Confidence 4678888889999998886543 34444555555555556554 5678888999999999997777 66522
Q ss_pred cCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEee----cc---C-Ccccccceeec----------CCCEE
Q 003331 556 TCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKL----PC---G-GSIFGSPAIDE----------VHDVL 615 (829)
Q Consensus 556 ~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~----~~---~-~~~~~~~~~~~----------~~~~l 615 (829)
.+.....+..+. +.+-.|.+++.||.|..++.++- -.|.. .+ + ..+.-.|...+ .-.++
T Consensus 100 ~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 100 AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 222222222222 23456788999999988876543 11211 11 1 01111111100 01457
Q ss_pred EEEecCCeEEEEEccCCCceEEEeecc----CCc----ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc
Q 003331 616 YVASTSGRLTAISVKALPFHTLWLHEL----EVP----AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP 686 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~~~~g~~~w~~~~----~~~----~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~ 686 (829)
..|..|+.+-+|+.++ + .|..+. +.. ....+.+......+..++.||.+++|. ..-..-|+...-.+
T Consensus 179 vSgGcDn~VkiW~~~~--~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~ 254 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDS--D--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE 254 (299)
T ss_pred eccCCccceeeeecCC--c--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc
Confidence 7778888888888776 4 454432 111 112222222345678888999999998 32223466544332
Q ss_pred ----eeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 687 ----IFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 687 ----~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
++.... ...++.+-++..|+.+.+|-
T Consensus 255 f~~~~w~vSW--S~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 255 FPDVVWRVSW--SLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CCcceEEEEE--eccccEEEEecCCcEEEEEE
Confidence 211111 11234555666677777776
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.12 Score=53.64 Aligned_cols=228 Identities=10% Similarity=0.025 Sum_probs=102.7
Q ss_pred CeEEEEecCC--CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHS--HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..||.+..+ ..++.+|+.|++...-....+......+++.+...+|.-..+..|+.+|+.|++..-.+..+...+..
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~ 127 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGY 127 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEE
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccc
Confidence 3455555443 47999999999987655543332224556666666544333568999999999987777776655532
Q ss_pred ee-eecCCCEEEEec-----------------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-
Q 003331 564 PV-VDAPRQLIWCGS-----------------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA- 618 (829)
Q Consensus 564 ~~-~~~~~~~i~~gs-----------------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~- 618 (829)
.. +.+.++..++|. ....|+.+|.++|+..-.+... ...+.+.+++.+..+++-
T Consensus 128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEE
T ss_pred cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEe
Confidence 22 223344455441 1246899999999765443322 112222222222222222
Q ss_pred e---c---CCeEEEEEccCCCceEEEeeccCCc--ceeeeeeeecCCEEEEEee-----CCeEEEEc-CCCCEEEEeecC
Q 003331 619 S---T---SGRLTAISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLV-----DGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 619 t---~---~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~l~~~~~-----~g~i~~~d-~~g~~~w~~~~~ 684 (829)
- + +..+..++.+ |...|......+ .....-..+++..+|.-+. +..|..+| .+++..|....+
T Consensus 207 HEGpw~~Vd~RiW~i~~d---g~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p 283 (386)
T PF14583_consen 207 HEGPWDLVDQRIWTINTD---GSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP 283 (386)
T ss_dssp E-S-TTTSS-SEEEEETT---S---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-
T ss_pred ccCCcceeceEEEEEEcC---CCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC
Confidence 1 1 2246666644 455555433322 1222334556777666433 22477788 777765543332
Q ss_pred CceeecCcccccCCCeEEEEeeCC-----------------eEEEEeCCCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNG-----------------SIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g-----------------~l~~~d~~tG~~~ 721 (829)
.. +.. ....++.+++|...+ -|+.++.++++..
T Consensus 284 ~~---~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~ 333 (386)
T PF14583_consen 284 WC---SHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR 333 (386)
T ss_dssp SE---EEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEE
T ss_pred ce---eee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee
Confidence 11 110 112366777774321 4566777776653
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00038 Score=57.66 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=54.7
Q ss_pred CeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc----hHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 177 GQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS----SEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 177 G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
|.+|+|.+||++|.++|++.....+...+......+...++..+.... .+.+.++|++.+++.+.-.. ...++..
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~~-~V~lv~~ 79 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVRP-EVELVPP 79 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS-E-EEEEE-T
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCceE-EEEEECC
Confidence 789999999999999999995444444444456677777888775532 34556677777777765432 3344555
Q ss_pred CcccCCCCCCcch
Q 003331 253 DSLPMTSSGKVDY 265 (829)
Q Consensus 253 ~~lP~t~~GKi~r 265 (829)
.+||++ .||..|
T Consensus 80 gtLpr~-~~K~~R 91 (96)
T PF14535_consen 80 GTLPRS-EGKAKR 91 (96)
T ss_dssp T-S----SSSS-S
T ss_pred CCccCC-CCcceE
Confidence 679997 678655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.046 Score=58.14 Aligned_cols=290 Identities=17% Similarity=0.200 Sum_probs=150.0
Q ss_pred cccccccc--ccccccceEEee-----CCCeEEEEecCCCcEEEEECCCCc-----EEEEEEcCCceee---ceEEee-C
Q 003331 464 ELWKVHME--SCVDASPLVVLK-----DSDIYLFVGSHSHKFICADAKRSS-----VLWEIKLEGRIEC---SAAVLA-D 527 (829)
Q Consensus 464 ~~W~~~~~--~~~~~sp~v~~~-----d~~~~l~igs~~g~l~~~d~~tg~-----~~w~~~~~~~~~~---~~~~~~-~ 527 (829)
.-|+...+ ...+...+.+.+ +....|++||.+|.|..|++..+. .+-+.++...+.. ..-+.. +
T Consensus 8 ewWst~~~~~e~~d~~~l~v~~~~~~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~ 87 (418)
T PF14727_consen 8 EWWSTKCGENEEFDQGSLCVGNLDNSPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE 87 (418)
T ss_pred heeeccCCCCCcCcCceEEEEcccCCCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC
Confidence 34776654 334444444422 345689999999999999986544 3333444433211 100111 1
Q ss_pred CcEEEEEEeCCE--EEEEEcCCCc-----E-----EEEEecCCee--eeeeeeec--CCCEEEEeccCCeEEEEEcCCCe
Q 003331 528 FSQVVVGCYKGK--IYFLDYLTGD-----I-----YWTFQTCGEV--KCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 528 ~~~v~vg~~dg~--l~~~d~~tG~-----~-----~w~~~~~~~~--~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
...+.|-. -.. ||.+-..+|. . +......... .+.-.+.. +...|-+-+.||.|..++.+.-
T Consensus 88 ~~~LaVLh-P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~- 165 (418)
T PF14727_consen 88 DLQLAVLH-PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF- 165 (418)
T ss_pred cceEEEec-CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-
Confidence 11233322 222 3333333333 1 1111111111 11111211 2466777889999999985542
Q ss_pred EEEeeccCCccc-ccceeecCCCEEEEEecCCeEEEEEcc---------------------CCCceEEEeeccCCcceee
Q 003331 592 CVYKLPCGGSIF-GSPAIDEVHDVLYVASTSGRLTAISVK---------------------ALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 592 ~~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~g~l~~~~~~---------------------~~~g~~~w~~~~~~~~~~s 649 (829)
.......+... +..++....+.+++++.+..+.+|... .+.-..-|.+..++....-
T Consensus 166 -~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i 244 (418)
T PF14727_consen 166 -AFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDI 244 (418)
T ss_pred -EEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEE
Confidence 22333333222 233344445677777777777777521 1112356888887765422
Q ss_pred eeeee--cC-CEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecC-c-ccccCC----CeEEEEeeCCeEEEEeCCCCcE
Q 003331 650 LCITS--AN-RHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGP-C-TSFALP----SQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 650 ~~~~~--~~-~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~-~-~~~~~~----~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.++.. .. ..+..| ...+++++.+|.+.|............ . +....+ ..+.+++.++.+..|. +.++
T Consensus 245 ~v~~~~~~~~~IvvLg--er~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L 320 (418)
T PF14727_consen 245 QVVRFSSSESDIVVLG--ERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTL 320 (418)
T ss_pred EEEEcCCCCceEEEEe--cceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeE
Confidence 22221 22 333444 468999998899999887654322111 1 101111 2488999999999995 6789
Q ss_pred EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 721 LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 721 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+|.-+.+....+... ......++.|.+=+.+|.|.+-=..
T Consensus 321 ~WsA~l~~~PVal~v---------~~~~~~~G~IV~Ls~~G~L~v~YLG 360 (418)
T PF14727_consen 321 VWSAQLPHVPVALSV---------ANFNGLKGLIVSLSDEGQLSVSYLG 360 (418)
T ss_pred EEecCCCCCCEEEEe---------cccCCCCceEEEEcCCCcEEEEEeC
Confidence 998776433221110 0111226777777778877654443
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=47.35 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=31.8
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
+.+|+++.+|.|+++|.+||+.+|+++......+.|.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 4689999999999999999999999998876665553
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0079 Score=66.12 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=129.5
Q ss_pred EEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE--EEeeccCC----ccccccee--e
Q 003331 539 KIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC--VYKLPCGG----SIFGSPAI--D 609 (829)
Q Consensus 539 ~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~----~~~~~~~~--~ 609 (829)
.++.|+.++- ...-.+.....+.+......+...+..|+++|.|..||...+.. .+...... ......+. .
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~ 302 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQN 302 (555)
T ss_pred eEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEecc
Confidence 4677776553 44444555555544433333457788899999999999887765 34332211 11111111 1
Q ss_pred cCCCEEEEEecCCeEEEEEccCCCc----eEEEeecc-C---Ccce--eeeee-eecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 610 EVHDVLYVASTSGRLTAISVKALPF----HTLWLHEL-E---VPAF--ASLCI-TSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 610 ~~~~~l~v~t~~g~l~~~~~~~~~g----~~~w~~~~-~---~~~~--~s~~~-~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
..+..++.++.||.|..|+.+...- ...-.... + .... .+..+ ..+....++|+..|.|+.-+ ...+.
T Consensus 303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 2124478888899999997653110 00000000 0 0000 11122 12456788999999998855 32211
Q ss_pred ----EEE----ee-cCCceeecCcccccCCCeEEEEeeCCeEEEEeCC-CCcEE-EEEecCCcccccccccccccccccc
Q 003331 678 ----IWR----CR-TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLL-WEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 678 ----~w~----~~-~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~-tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+++ +. ..+++.+....++ ...++..+.|.++..|... .-.++ |.......+....+..
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSp--------- 451 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSP--------- 451 (555)
T ss_pred cccccccccccccccCcceEeeecCCC--ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcC---------
Confidence 111 11 1122322222222 2245555558888888755 33333 3222222222111111
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecc
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
..-..++++..+|.|.+||+.....+-. .+.+....+...... .+..|.+|...|.++.|++.
T Consensus 452 --trpavF~~~d~~G~l~iWDLl~~~~~Pv-----------~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 452 --TRPAVFATVDGDGNLDIWDLLQDDEEPV-----------LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred --cCceEEEEEcCCCceehhhhhccccCCc-----------ccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1245677788899999999874421111 011111111111111 24578889999999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.023 Score=58.43 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=104.5
Q ss_pred cccceEEeeCCCeEEEEec-CC--CcEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003331 475 DASPLVVLKDSDIYLFVGS-HS--HKFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 475 ~~sp~v~~~d~~~~l~igs-~~--g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
.++|+++ +++||.-| ++ |.||..|+. |+-+.+ .+..+-. .--...||+.++.. ..|.||.+|++|-++
T Consensus 228 vS~PmIV----~~RvYFlsD~eG~GnlYSvdld-GkDlrrHTnFtdYY--~R~~nsDGkrIvFq-~~GdIylydP~td~l 299 (668)
T COG4946 228 VSSPMIV----GERVYFLSDHEGVGNLYSVDLD-GKDLRRHTNFTDYY--PRNANSDGKRIVFQ-NAGDIYLYDPETDSL 299 (668)
T ss_pred cCCceEE----cceEEEEecccCccceEEeccC-CchhhhcCCchhcc--ccccCCCCcEEEEe-cCCcEEEeCCCcCcc
Confidence 3578885 66677655 44 589999986 554433 2222211 22334466666554 368899999988766
Q ss_pred EEEEecC--C------eeeeeee-----eec-CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE
Q 003331 551 YWTFQTC--G------EVKCQPV-----VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 551 ~w~~~~~--~------~~~~~~~-----~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~ 616 (829)
.. .+.+ - .....|. ++. +++.+..-| .|..+..+...|-.+..-..++ +.-.- +..+...+.
T Consensus 300 ek-ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~-VrY~r-~~~~~e~~v 375 (668)
T COG4946 300 EK-LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGG-VRYRR-IQVDPEGDV 375 (668)
T ss_pred ee-eecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCc-eEEEE-EccCCcceE
Confidence 43 2222 0 0000110 011 223333333 4455555554443332211111 11111 111235788
Q ss_pred EEecCC-eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 617 VASTSG-RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 617 v~t~~g-~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
+|+.+| .+-++|..+ |+..- ...+-....+..+.++++.+.++.....+.++| .+|+..
T Consensus 376 igt~dgD~l~iyd~~~--~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 376 IGTNDGDKLGIYDKDG--GEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred EeccCCceEEEEecCC--ceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 899988 788899886 65433 322223335667777888899999889999999 888764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.066 Score=65.06 Aligned_cols=247 Identities=15% Similarity=0.183 Sum_probs=126.5
Q ss_pred EEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCe--------------eeeeeeeecCCCEEEEecc-CCeEEEEE
Q 003331 523 AVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE--------------VKCQPVVDAPRQLIWCGSH-DHNLYALD 586 (829)
Q Consensus 523 ~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~--------------~~~~~~~~~~~~~i~~gs~-~g~l~~~d 586 (829)
++...++.+|+.. .++.|..+|. +|+.+-.+...+. .....+++.+++.||++.. ++.|..+|
T Consensus 574 avd~~~g~lyVaDs~n~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 574 AIDLLNNRLFISDSNHNRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEECCCCeEEEEECCCCeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 4444456677764 4667999995 5665433322110 0122345555677888754 46788899
Q ss_pred cCCCeEEEeecc--------CC-----ccccc---ceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeecc------C
Q 003331 587 FRNYRCVYKLPC--------GG-----SIFGS---PAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL------E 643 (829)
Q Consensus 587 ~~tg~~~w~~~~--------~~-----~~~~~---~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~------~ 643 (829)
..++...-.... ++ ..... .+++++++.+|++. .++.|+.+|..+ |...-.... .
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~--g~v~~~~G~G~~~~~~ 730 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD--GVTRVFSGDGYERNLN 730 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC--CeEEEEecCCccccCC
Confidence 887764321110 00 01122 35565567888875 457789999876 443211100 0
Q ss_pred C--------cceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec-----------C---C----ceeecC-ccc
Q 003331 644 V--------PAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT-----------G---G----PIFAGP-CTS 694 (829)
Q Consensus 644 ~--------~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~-----------~---~----~~~~~~-~~~ 694 (829)
. ......++.++++.+|++.. ++.|.++| .+|...+.... + + ..+..| .+.
T Consensus 731 g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva 810 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL 810 (1057)
T ss_pred CCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee
Confidence 0 00123456667777887754 57899999 66654332210 0 0 011122 123
Q ss_pred ccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCcccc-ccccccccccccccccCCCcEEEEE-ccCCcEEEEEeecC
Q 003331 695 FALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITA-SAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIHILRVNLD 771 (829)
Q Consensus 695 ~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~l~~~d~~~~ 771 (829)
.+.+|.+|++. .++.|..||.+++.+......+...+. ............+-....++.+|++ +.++.|.+||.+++
T Consensus 811 vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 811 CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 34567788874 577899999988877543322110000 0000000000000011113445554 56778999998876
Q ss_pred c
Q 003331 772 V 772 (829)
Q Consensus 772 ~ 772 (829)
.
T Consensus 891 ~ 891 (1057)
T PLN02919 891 E 891 (1057)
T ss_pred c
Confidence 3
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.052 Score=59.24 Aligned_cols=220 Identities=11% Similarity=0.085 Sum_probs=117.0
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcE---EEEEEeC--CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCC
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQ---VVVGCYK--GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 571 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~---v~vg~~d--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 571 (829)
.|+..|...+... .+........++.+++||.. +|+...+ ..||..++.+|+..-.....+. ...|.+++++.
T Consensus 166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCCC
Confidence 5666676544432 22223333457899999864 3344333 3699999988876543333332 34577777776
Q ss_pred EEEEecc-CC--eEEE--EEcCC---CeEEEeeccCCcccccceeecCCCEEEEEe-cCC--eEEEEEccCCCceEEEee
Q 003331 572 LIWCGSH-DH--NLYA--LDFRN---YRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSG--RLTAISVKALPFHTLWLH 640 (829)
Q Consensus 572 ~i~~gs~-~g--~l~~--~d~~t---g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g--~l~~~~~~~~~g~~~w~~ 640 (829)
.|++.+. +| .++. |+..+ |+..............+.+++++..|++.+ .+| .++.++.+...+... ..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~-~l 322 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR-LL 322 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE-Ee
Confidence 6665432 22 3444 56554 343333322223445678888777766655 344 477777653212221 12
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee---CCeEEEE
Q 003331 641 ELEVPAFASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR---NGSIYSF 713 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~---~g~l~~~ 713 (829)
.........+..+++++.+++.... ..|+.+| .+|+...-...... ...+.... .+..|++.+. ...|+.+
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~-~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN-KESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC-ccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 1122223466778888888776543 3588899 77765322211111 11222211 1234554432 3468899
Q ss_pred eCCCCcEE
Q 003331 714 EQESGNLL 721 (829)
Q Consensus 714 d~~tG~~~ 721 (829)
|..+++..
T Consensus 401 dl~~g~~~ 408 (428)
T PRK01029 401 SLITKKTR 408 (428)
T ss_pred ECCCCCEE
Confidence 98877654
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0099 Score=55.84 Aligned_cols=234 Identities=11% Similarity=0.088 Sum_probs=128.3
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCeeeeeeeee-c-CCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGEVKCQPVVD-A-PRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~-~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
.+.-.|++|...+.|+.|..+...+.. ++-+...+....-...+. + .++.|...++||.+..|..++| .|...
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~ 95 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKA 95 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhh
Confidence 334456788999999999888876533 333333333222222222 2 3566777899999999998887 66542
Q ss_pred c----CCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEee-ccCCcceeeee--------------eeecC
Q 003331 598 C----GGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLH-ELEVPAFASLC--------------ITSAN 656 (829)
Q Consensus 598 ~----~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~-~~~~~~~~s~~--------------~~~~~ 656 (829)
. +.....+....+. +-.|.+++.||.|.+++.++..+-..-+. ..+.....+.. +...-
T Consensus 96 ~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~ 175 (299)
T KOG1332|consen 96 YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKV 175 (299)
T ss_pred hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccc
Confidence 2 2223333333221 23578899999999998876312111011 11111111111 11112
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEEEeec--CCc------eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003331 657 RHVICCLVDGHVVALD-SSGSIIWRCRT--GGP------IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~~------~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
.++..|..|..+.++. .++ .|.... .+. +--.|.+. .....|..++.||++..|-.......|+...-
T Consensus 176 krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll 252 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL 252 (299)
T ss_pred ceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEecCccCccccccc
Confidence 4577777788888887 555 344321 110 11122111 12346778889999999986643345765433
Q ss_pred CccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+.... . ..+....++.+.++..|..+.+|..+
T Consensus 253 ~~f~~~~-w-------~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 253 EEFPDVV-W-------RVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccCCcce-E-------EEEEeccccEEEEecCCcEEEEEEeC
Confidence 3311100 0 01223448899999999999999655
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00021 Score=76.70 Aligned_cols=178 Identities=12% Similarity=0.069 Sum_probs=118.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.....|-.|+.+|.|..||+.+++...++..+.....+..+.+.+.+...|+.|..+..||.+..-+...|..+..+..
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 34566788889999999999999998776554443334556777766666688899999999875556666665555666
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..-+.+++..+..|+.|..+..||...|++.-.|..+.....++-+.+.+-.+--|+.++.+..||.++ .+.+-..+.
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--fe~I~s~~~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--FEVISSGKP 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce--eEEeeccCC
Confidence 666777777888888889999999999999888775433333333433222334567788899999886 555544333
Q ss_pred CCcceeeeeeeecCCEEEEE
Q 003331 643 EVPAFASLCITSANRHVICC 662 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~ 662 (829)
......+..+.+++..++.|
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccCCceeeeecCCceeeecC
Confidence 22222333444444444444
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.14 Score=57.22 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=112.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC---cE--EEEEe
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG---DI--YWTFQ 555 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG---~~--~w~~~ 555 (829)
+.+..-.++..++.|+..++. |..... .....+..+++.+..+.+|..||.|..|. .-| .- ...+.
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~-d~~~~~~~~t~t~lH 248 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWR-DFGSSDDSETCTLLH 248 (792)
T ss_pred ceEEEEEEeeeEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEe-ccccccccccceEEE
Confidence 334334455568888877655 432211 11123456778888899999999999986 233 10 01112
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
.+........+..++..+|.|+..+.+..|...|++...--..++ ++-..+++++++...+...|+.+..+...+ -+
T Consensus 249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs-~I~~i~vS~ds~~~sl~~~DNqI~li~~~d--l~ 325 (792)
T KOG1963|consen 249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGS-PILHIVVSPDSDLYSLVLEDNQIHLIKASD--LE 325 (792)
T ss_pred ecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCC-eeEEEEEcCCCCeEEEEecCceEEEEeccc--hh
Confidence 222223344566688999999999999999999988444333333 334455566566666667788888887543 22
Q ss_pred EEEeecc---C--------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 636 TLWLHEL---E--------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 636 ~~w~~~~---~--------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
.+-.... . ........+.+.-+.+.+.+..|.|-.|| .+-+.+.++.
T Consensus 326 ~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 326 IKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred hhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 2222211 1 11122334444455666677788898888 5555555554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.16 Score=55.16 Aligned_cols=153 Identities=9% Similarity=-0.000 Sum_probs=94.7
Q ss_pred eeeceEEeeCCcE-EEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEe-cc--CCeEEEEEcCCC
Q 003331 518 IECSAAVLADFSQ-VVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCG-SH--DHNLYALDFRNY 590 (829)
Q Consensus 518 ~~~~~~~~~~~~~-v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~g-s~--~g~l~~~d~~tg 590 (829)
...++.++++++. ++..+++ ..||.+|..+|+...-....+ ....+.+++++..+++. +. +..||.+|..+|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4457889999874 6665544 469999999998765444333 33445677666666543 32 357999998888
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--
Q 003331 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-- 665 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-- 665 (829)
+...... .......+.+++++..|++.+.. | .||.+|+++ |+..-...... ....++++++.+++....
T Consensus 268 ~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~--g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 268 TLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS--GSVEQVVFHGK---NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred cEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCC--CCeEeCccCCC---cCceECCCCCEEEEEEcCCC
Confidence 6543222 22234567788878888777643 2 689999886 55421111111 123667788877665432
Q ss_pred -------CeEEEEc-CCCCE
Q 003331 666 -------GHVVALD-SSGSI 677 (829)
Q Consensus 666 -------g~i~~~d-~~g~~ 677 (829)
..|+.+| .+|..
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred cccCCCCcEEEEEECCCCCe
Confidence 3688888 66653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=65.60 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=97.0
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee-eee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK-CQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~-~~~ 564 (829)
.+.|..++.|..|..||..||+..-+.. +.....+..+..+|+.+...|.|..|..||..+|++++.-..+...+ ...
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 4456666778899999999999887766 44456688999999999999999999999999999999764443332 223
Q ss_pred eeecCCCEEEEecc----CCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEccC
Q 003331 565 VVDAPRQLIWCGSH----DHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVKA 631 (829)
Q Consensus 565 ~~~~~~~~i~~gs~----~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~~ 631 (829)
++-.++. +++.+. +..+..||+.+-+ .....+.. +-.-.|+++++.+.||+. -.|+.|..|...+
T Consensus 223 ifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 223 IFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 3443333 544322 3456677765432 12222222 223457788877888764 4578888888775
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.045 Score=59.34 Aligned_cols=177 Identities=10% Similarity=-0.016 Sum_probs=105.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
..|+.+|+.+|+...-....+ ....+.+++|+..+++... +..||.+|..+|+..- ..........+.+.+++..
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCE
Confidence 469999999998654433333 3345678888877665432 3579999988887543 2222223445678877777
Q ss_pred EEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---------CeEEEEEccCCCceEEEee
Q 003331 573 IWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---------GRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 573 i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---------g~l~~~~~~~~~g~~~w~~ 640 (829)
|++.+.. ..||.+|..+|+.......+. . .+.++++++.+++.+.. ..|+.+|+++ |... ..
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--g~~~-~L 364 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--DYIR-RL 364 (419)
T ss_pred EEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--CCeE-EC
Confidence 8776643 269999999887743332222 1 23566667766554432 3688888876 5432 22
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEe
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRC 681 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~ 681 (829)
... .....+.+++++..+++.+..+ .++.++.+|.....+
T Consensus 365 T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 365 TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 222 1223566777777777665432 244555445443333
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.034 Score=55.56 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=117.1
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-CeeeeeeeeecCCC--EE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-GEVKCQPVVDAPRQ--LI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~--~i 573 (829)
.+..++.+.+..+=+...+..+. .+--+.++++|.-. ..||.||.++=+++.+.++. .......++....+ ++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL---~VrmNr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~yl 144 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSIL---AVRMNRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYL 144 (391)
T ss_pred eEEEEEcccCceEEEEecCCceE---EEEEccceEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceE
Confidence 47777777776666555555442 22234456666553 44999999999999887654 23332333333332 33
Q ss_pred EE-e-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEE-EEEccCCCceEEEeeccCCc--cee
Q 003331 574 WC-G-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLT-AISVKALPFHTLWLHELEVP--AFA 648 (829)
Q Consensus 574 ~~-g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~-~~~~~~~~g~~~w~~~~~~~--~~~ 648 (829)
.. + ...|.|+.||..+-+..-.+..+....+...++.++..+..++..|+|. ++...+ |+.+..+..+.. ...
T Consensus 145 Ayp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~Iy 222 (391)
T KOG2110|consen 145 AYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIY 222 (391)
T ss_pred EecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEE
Confidence 32 2 2358899999999888888888888888888888788888899889865 567666 888877755432 235
Q ss_pred eeeeeecCCEEEEEeeCCeEEEEc
Q 003331 649 SLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+.++..+...+.+.+..++|.+|-
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEE
Confidence 677777888888888888888875
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.027 Score=58.90 Aligned_cols=110 Identities=13% Similarity=0.097 Sum_probs=65.9
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
.+.+.+.|.||++..++. .|++......+.....+.-...+|.-+...+.||.|..|. ++|-++-+..-.+....+..
T Consensus 75 ~d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 446777888998888874 5777666655555444556677777788888899999998 78866554332333333334
Q ss_pred eec-CCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 566 VDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 566 ~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
+.+ ....+|+....-.+.-+-+...-+.|+.+
T Consensus 153 W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH 185 (737)
T KOG1524|consen 153 WAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH 185 (737)
T ss_pred ECCCCCceEEecCCeEEEeecccccceeEEecc
Confidence 444 34555554322223333334444556543
|
|
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00022 Score=79.40 Aligned_cols=88 Identities=19% Similarity=0.351 Sum_probs=55.1
Q ss_pred EecCceEEEcc--CC--cEEEEeecCCcEEECCeeeChHHHHHHHhCC-----CCeeEEEEEEeecCCceEEEEEEEEec
Q 003331 149 FRTGDFARRIQ--SG--DLVFLGRKDRTIKINGQRMALEEIEHTLRGH-----PDVVDTAVVSHKHQGELVILVAFIVLK 219 (829)
Q Consensus 149 ~~TGDl~~~~~--~G--~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~-----~~v~~~~v~~~~~~~~~~~~~~~v~~~ 219 (829)
|+.||++++.. ++ .+.|+||.+.++.+.|++++-.+|++++.+. -.+.+..+............+.++++.
T Consensus 371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~ 450 (528)
T PF03321_consen 371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE 450 (528)
T ss_dssp EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence 99999999742 34 7999999999999999999999999998764 335555555552222223556666666
Q ss_pred CCCCchHHHHHHHHHHHHhcC
Q 003331 220 EKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 220 ~~~~~~~~~~~~l~~~l~~~l 240 (829)
... ...+.+.+.+.+.|
T Consensus 451 ~~~----~~~~~~~~~lD~~L 467 (528)
T PF03321_consen 451 GEP----DDLEELAKALDESL 467 (528)
T ss_dssp S-H----HHHHHHHHHHHHCS
T ss_pred CCc----hHHHHHHHHHHHHh
Confidence 542 22334444444444
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.08 Score=57.80 Aligned_cols=181 Identities=13% Similarity=0.101 Sum_probs=93.4
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE---EEEeccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCC
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL---IWCGSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 612 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~---i~~gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~ 612 (829)
..|+..|...+... .+........+|.+.+++.. +|+...+ ..||..+..+|+........+. ...|.+++++
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCC
Confidence 36888886544433 33334444567888877653 3444333 3599999988875544433333 3457788777
Q ss_pred CEEEEEec-CC--eEEE--EEccCC-CceEEEeeccCCcceeeeeeeecCCEEEEEee-CC--eEEEEc-C-CCCEEEEe
Q 003331 613 DVLYVAST-SG--RLTA--ISVKAL-PFHTLWLHELEVPAFASLCITSANRHVICCLV-DG--HVVALD-S-SGSIIWRC 681 (829)
Q Consensus 613 ~~l~v~t~-~g--~l~~--~~~~~~-~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g--~i~~~d-~-~g~~~w~~ 681 (829)
..|++... .| .++. ++..+. .|+..............+.+++++..+++.+. +| .++.++ . .+...-..
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 77766542 22 3444 455431 12222222111122245677888887776653 33 467666 2 23222222
Q ss_pred ecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEE
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNLL 721 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~ 721 (829)
.........+..+.+ +..|++.+.+ ..|+.+|..+|+..
T Consensus 323 t~~~~~~~~p~wSPD-G~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 323 TKKYRNSSCPAWSPD-GKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ccCCCCccceeECCC-CCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 211111122222222 3345544432 36899999988764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.052 Score=56.13 Aligned_cols=222 Identities=12% Similarity=0.094 Sum_probs=91.3
Q ss_pred EEECCCCcEEEEEEcCCc-----eeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCC
Q 003331 500 CADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ 571 (829)
Q Consensus 500 ~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 571 (829)
..|+.||..+-++.-... .....++..+|..++..+. ...+|.+|+++|+...-....+......++...+.
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC
Confidence 357888876644432222 1234567777766555543 34799999999998765443333222334444556
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEEe-----------------------cCCeEEE
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVAS-----------------------TSGRLTA 626 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~t-----------------------~~g~l~~ 626 (829)
.+|.-..+..|+.+|++|++..-.+........ ..+... +.+.+++. ....|+.
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 654433456899999999887555544432221 112222 34444332 1135777
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCE-EEEEe------eCCeEEEEcCCCCEEEEeecCC--ceeecCcccccC
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRH-VICCL------VDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFAL 697 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~-l~~~~------~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~ 697 (829)
+|+++ |+..-.+.... -...+..++.+.. |.+|- .+..|..++.+|.-.|...... .+..-..... .
T Consensus 173 idl~t--G~~~~v~~~~~-wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~-D 248 (386)
T PF14583_consen 173 IDLKT--GERKVVFEDTD-WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVP-D 248 (386)
T ss_dssp EETTT----EEEEEEESS--EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-T-T
T ss_pred EECCC--CceeEEEecCc-cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccC-C
Confidence 88877 65432222111 1122223332222 22221 1335666665555555543221 1111111111 1
Q ss_pred CCeEEEEee-----CCeEEEEeCCCCcEEEEEec
Q 003331 698 PSQVLICSR-----NGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 698 ~~~i~~~t~-----~g~l~~~d~~tG~~~w~~~~ 726 (829)
+..||.-+. +-.|+.+|+.|++..|....
T Consensus 249 G~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~ 282 (386)
T PF14583_consen 249 GSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM 282 (386)
T ss_dssp SS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE
T ss_pred CCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC
Confidence 234544322 23689999999987765444
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.066 Score=52.42 Aligned_cols=197 Identities=9% Similarity=0.031 Sum_probs=101.3
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE----EecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEc--
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT----FQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDF-- 587 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~----~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~-- 587 (829)
+.......+++.+|+.+...+.|+.|..|+.++-...-. ...+-.-.....+.++-.-+++.... ..|+.|-.
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K 164 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVK 164 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeee
Confidence 344455788999999999999999999999876322110 01111111222344443333333323 34555432
Q ss_pred C-CCeEEEeec------c---CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003331 588 R-NYRCVYKLP------C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 588 ~-tg~~~w~~~------~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
+ +|..-..+. . +...+.+.-+.+....|..++.+..|..|+.+ |+.+-..+.+.......++++++.
T Consensus 165 ~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk---Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 165 KTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK---GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred cccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC---CceeeeeccccccccceeeCCCCc
Confidence 2 222111100 0 01111122233323345556667778888877 777777665544444556777777
Q ss_pred EEEEEeeCCeEEEEc----CCCCEE-----EEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 658 HVICCLVDGHVVALD----SSGSII-----WRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d----~~g~~~-----w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.++...-.+.+|. .+|... ++.+... .+....+ . .....+...+.||.+..||.+
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF-s-n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF-S-NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee-C-CCcceeEEEecCCcEEEeecc
Confidence 777765555555544 344321 1221111 1111111 1 123467888999999999854
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.007 Score=66.00 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=109.2
Q ss_pred ccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ce-eeceEE---eeCCcEEEEEEeCCE
Q 003331 466 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RI-ECSAAV---LADFSQVVVGCYKGK 539 (829)
Q Consensus 466 W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~-~~~~~~---~~~~~~v~vg~~dg~ 539 (829)
|..++.+...|-.+ ..+..+.+.+|-.--.|++++...-.+.-....+. .. .+..-+ ..+.+.|.+.+.+|.
T Consensus 34 ~~~~~k~~~nAIs~--nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~ 111 (839)
T KOG0269|consen 34 MNCKLKAKANAISV--NRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGV 111 (839)
T ss_pred eeeecccccceEee--cCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCc
Confidence 55555444332222 23344455555443457777765433222222111 11 111111 123456788888999
Q ss_pred EEEEEcCC---CcEEEEEecCCeeeeeeeee-cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-E
Q 003331 540 IYFLDYLT---GDIYWTFQTCGEVKCQPVVD-APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-V 614 (829)
Q Consensus 540 l~~~d~~t---G~~~w~~~~~~~~~~~~~~~-~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~ 614 (829)
|.+||+.. .+.+..|.-+........+. ....+|+.|+.||.+.+||.+..+-.-.+......+....+.+..+ .
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK 191 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce
Confidence 99999754 23322232222221122221 2347888999999999999987665554444333333333333334 4
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
...+..+|.|..||+.. -.+|..+. +..........++...+..|+.|+.+.+||
T Consensus 192 F~s~~dsG~lqlWDlRq---p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQ---PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred EEEecCCceEEEeeccC---chhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 44555678889999874 23343332 222234555666777888888899999999
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.32 Score=52.23 Aligned_cols=200 Identities=13% Similarity=0.171 Sum_probs=128.0
Q ss_pred ceEEeeCCcEEEEEEeC-CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEee
Q 003331 521 SAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~ 596 (829)
...+...+..+|+.+.+ +.+..+|..+-+.......+. ......++.+++.+|++.. ++.+..+|..+++..-..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 44566677788887754 779999977776665554443 2233455667789999765 578999999999887775
Q ss_pred ccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEe--eccC---CcceeeeeeeecCCEEEEEeeC---Ce
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWL--HELE---VPAFASLCITSANRHVICCLVD---GH 667 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~--~~~~---~~~~~s~~~~~~~~~l~~~~~~---g~ 667 (829)
..+... ....++.++..+|+.. .++.+..+|.++ ..+|+ .... ........+.+++.++|+.... +.
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~---~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG---NSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC---cceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 554433 4556677778899887 567899999764 44553 1101 1111344566678888887655 48
Q ss_pred EEEEc-CCCCEEEE-eecCCceeecCccccc-CCCeEEEEee-CCeEEEEeCCCCcEEEEEecC
Q 003331 668 VVALD-SSGSIIWR-CRTGGPIFAGPCTSFA-LPSQVLICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 668 i~~~d-~~g~~~w~-~~~~~~~~~~~~~~~~-~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
+..+| .++...+. ...+.. ....+... .+..+|+... .+.++.+|..+.++.-.....
T Consensus 233 v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~ 294 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG 294 (381)
T ss_pred EEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence 89999 77777665 333331 11111112 2446777643 478999998887776554433
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00094 Score=75.82 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=130.3
Q ss_pred CeEEEEecCCCcEEEEECCC---Cc---EEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEec--
Q 003331 486 DIYLFVGSHSHKFICADAKR---SS---VLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQT-- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---g~---~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~-- 556 (829)
.|.|.-|..||.|..||+.. +. .+-+++.+.+.+...-+....+ .+..|..||.|+.||+++-+.-.++..
T Consensus 80 ~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred cceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 35677777899999999764 21 1122223333223344544444 778889999999999877443322210
Q ss_pred -CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--ccccceeecCC-CEEEEEecCC---eEEEEE
Q 003331 557 -CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVH-DVLYVASTSG---RLTAIS 628 (829)
Q Consensus 557 -~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~-~~l~v~t~~g---~l~~~~ 628 (829)
.+++.+ ..+... ..++..++.+|....||++..+.+-.+...+. .++.....+++ ..|++++.+. .|..||
T Consensus 160 ~~~eI~~-lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 160 PPSEIKC-LSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CcccceE-eccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 112211 111111 12344567788999999988776655544332 23344444433 3577777654 355666
Q ss_pred ccCCCceEEEeeccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe
Q 003331 629 VKALPFHTLWLHELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS 705 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t 705 (829)
+... -..+..++.+.....+...+..+ ..++.+..|+.++|+| .+|+++..+...+.- +.... .....+.+-+.+
T Consensus 239 lR~a-ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w-~pr~P~~~A~as 316 (1049)
T KOG0307|consen 239 LRFA-SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQW-CPRNPSVMAAAS 316 (1049)
T ss_pred cccc-CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeee-cCCCcchhhhhe
Confidence 4431 12223333344444455554444 5666777899999999 999999888764432 11111 111223455667
Q ss_pred eCCeEEEEeCCCCc
Q 003331 706 RNGSIYSFEQESGN 719 (829)
Q Consensus 706 ~~g~l~~~d~~tG~ 719 (829)
.+|.|-.++..++.
T Consensus 317 fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 317 FDGKISIYSLQGTD 330 (1049)
T ss_pred eccceeeeeeecCC
Confidence 78888888776543
|
|
| >PRK00982 acpP acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0005 Score=54.57 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++.+.++++.++.++. ..+..+.+| -++|-|||..+++...+ .++...+++.+|+..++.++.++
T Consensus 3 ~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 76 (78)
T PRK00982 3 EIFEKVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKH 76 (78)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHh
Confidence 4567788888888876 458888899 79999999999998765 47788899999999999999764
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.098 Score=53.57 Aligned_cols=145 Identities=11% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCEEEEEEcCCCcEEEEEecCCee--------------------------eeee-eeecCCCEEEEeccCCeEEEEEcCC
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEV--------------------------KCQP-VVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~--------------------------~~~~-~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
|+.++.+|.+||+++|+....+-+ -... -...++++|+..-+-..|+++|.++
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 567899999999999874321100 0001 1122234444444457899999999
Q ss_pred CeEEEeeccC-Ccc-------c---ccceee---cCCCEEEEEe-----------cCCeEEEEEccCCCceEEEeec-cC
Q 003331 590 YRCVYKLPCG-GSI-------F---GSPAID---EVHDVLYVAS-----------TSGRLTAISVKALPFHTLWLHE-LE 643 (829)
Q Consensus 590 g~~~w~~~~~-~~~-------~---~~~~~~---~~~~~l~v~t-----------~~g~l~~~~~~~~~g~~~w~~~-~~ 643 (829)
|+++|+.... +.. + -.+-+. ++++.|-+-. ..+.++.+|..+.+-+.++.+. ..
T Consensus 175 G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~ 254 (299)
T PF14269_consen 175 GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHP 254 (299)
T ss_pred CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCC
Confidence 9999998533 110 0 011111 1123332211 2356777787763333333333 11
Q ss_pred Ccce----eeeeeeecCCEEEEE-eeCCeEEEEcCCCCEEEEee
Q 003331 644 VPAF----ASLCITSANRHVICC-LVDGHVVALDSSGSIIWRCR 682 (829)
Q Consensus 644 ~~~~----~s~~~~~~~~~l~~~-~~~g~i~~~d~~g~~~w~~~ 682 (829)
.+.. .+....++ +.++++ +..+.+.=++.+|+++|++.
T Consensus 255 ~~~~s~~~G~~Q~L~n-Gn~li~~g~~g~~~E~~~~G~vv~~~~ 297 (299)
T PF14269_consen 255 DGFYSPSQGSAQRLPN-GNVLIGWGNNGRISEFTPDGEVVWEAQ 297 (299)
T ss_pred CcccccCCCcceECCC-CCEEEecCCCceEEEECCCCCEEEEEE
Confidence 2111 22233334 455554 44566777778899999875
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.091 Score=51.50 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=93.8
Q ss_pred CCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccC
Q 003331 569 PRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 569 ~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.++.+|-++.- ..|+.+|+++|+.+.+.......++ .+++. ++.||.-|+ ++..+.||.++ .+.+-++...
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~ 129 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYP 129 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT--TEEEEEEE-S
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc--ceEEEEEecC
Confidence 34777776532 2699999999999998888766554 23333 378888887 57789999987 7766665544
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec--CC-ceeecCcccccCCCeEEEEe-eCCeEEEEeCCCC
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--GG-PIFAGPCTSFALPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~-~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
... =.+..++..+++......|+.+| .+-+..-+.++ .+ ++.... -..-.+|.||+-- ....|..+|+.||
T Consensus 130 ~EG---WGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN-ELE~i~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 130 GEG---WGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN-ELEYINGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp SS-----EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE-EEEEETTEEEEEETTSSEEEEEETTT-
T ss_pred Ccc---eEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE-eEEEEcCEEEEEeCCCCeEEEEeCCCC
Confidence 322 12345788899988888999999 77666655443 22 211111 0122367888764 3567999999999
Q ss_pred cEEEEEec
Q 003331 719 NLLWEYSV 726 (829)
Q Consensus 719 ~~~w~~~~ 726 (829)
++.-.++.
T Consensus 206 ~V~~~iDl 213 (264)
T PF05096_consen 206 KVVGWIDL 213 (264)
T ss_dssp BEEEEEE-
T ss_pred eEEEEEEh
Confidence 99876664
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0054 Score=58.16 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=78.1
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCCc------ccccceee----cCCCEEEEEecCCeEEEEEccCCCceEEE--ee
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYKLPCGGS------IFGSPAID----EVHDVLYVASTSGRLTAISVKALPFHTLW--LH 640 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~----~~~~~l~v~t~~g~l~~~~~~~~~g~~~w--~~ 640 (829)
+.+|-.+|++..||..++..+-.+..... ....|+.+ ..-++=..++.+-.+..|+++..+|...- ..
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 44566679999999999855433322111 11111111 10111122333334556665554454322 22
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEeeCCeEEEEeC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~ 715 (829)
....+......+-++++.+..+.+|+++.+|+ +++..+-.......- ..++.+..+ +.+-.++.|+.|..|+.
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag--vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG--VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc--eeEEEeCCCCchhhhccCCceEEeeec
Confidence 34455556677888899999999999999999 888776444332211 111122223 45667788888877763
|
|
| >CHL00124 acpP acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00052 Score=55.03 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCccc-cCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNFFT-MGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~-lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+.+.++.++.++. ..+.++++|.+ +|.|||.+++|...+ .++...+...+|+..++.++.++.
T Consensus 4 ~~i~~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 4 NDIFEKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred HHHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 45677888888888876 56899999988 999999999998765 477778999999999999998754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.069 Score=52.29 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=95.4
Q ss_pred CCeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCee
Q 003331 485 SDIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.++.+|-+|.. ..|..+|+.||+.+.+.+++.....-.+... ++.+|.-++ ++..+.||.+|-+.+-++...++-
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 46788888742 3799999999999999888876543222222 357888887 577899999999998888776543
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--Cccc---ccceeecCCCEEEEEec-CCeEEEEEccCCCc
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPF 634 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g 634 (829)
..- .. ++..+|....+..|+.+|+++-+.+.++... +... .-.-+. ++.||+.-+ ...|..+|+++ |
T Consensus 133 WGL--t~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~t--G 205 (264)
T PF05096_consen 133 WGL--TS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPET--G 205 (264)
T ss_dssp -EE--EE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT---
T ss_pred eEE--Ec-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCC--C
Confidence 322 22 4567888777789999999987776655432 2111 111222 478887665 34688999998 8
Q ss_pred eEEEeec
Q 003331 635 HTLWLHE 641 (829)
Q Consensus 635 ~~~w~~~ 641 (829)
+..-.++
T Consensus 206 ~V~~~iD 212 (264)
T PF05096_consen 206 KVVGWID 212 (264)
T ss_dssp BEEEEEE
T ss_pred eEEEEEE
Confidence 8766554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.29 Score=49.30 Aligned_cols=239 Identities=12% Similarity=0.147 Sum_probs=127.6
Q ss_pred eeCCCeEEEEecCC---CcEEE--EECCCCcEEEE--EEcCCceeeceEEeeCCcEEEEEEeCC-EEEEEEcC-CCcEEE
Q 003331 482 LKDSDIYLFVGSHS---HKFIC--ADAKRSSVLWE--IKLEGRIECSAAVLADFSQVVVGCYKG-KIYFLDYL-TGDIYW 552 (829)
Q Consensus 482 ~~d~~~~l~igs~~---g~l~~--~d~~tg~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg-~l~~~d~~-tG~~~w 552 (829)
.+.....||++-.+ |.+.+ ||..+|++... ....+..-+...++.++..|+++.+.. .|..+-.. +|.+.-
T Consensus 47 ~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 47 VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 34456688887654 45554 55556776432 233333335567777888999998864 45555443 365532
Q ss_pred EE---ecCCe--------e-eeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeecc---CCcccccceeecCCCEEE
Q 003331 553 TF---QTCGE--------V-KCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 553 ~~---~~~~~--------~-~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~---~~~~~~~~~~~~~~~~l~ 616 (829)
.. ...+. . .-...+.+++.+|++.+. ...++.|+.+.|++.-.... .+.--..+++.+++...|
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence 21 11111 0 112234555666666532 23688888888876433221 222234567777788888
Q ss_pred EEec-CCeEEEEEccCCCceE--EEeecc------CCcceeeeeeeecCCEEEEEeeC-CeEE--EEc-CCCCEEEE--e
Q 003331 617 VAST-SGRLTAISVKALPFHT--LWLHEL------EVPAFASLCITSANRHVICCLVD-GHVV--ALD-SSGSIIWR--C 681 (829)
Q Consensus 617 v~t~-~g~l~~~~~~~~~g~~--~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~-g~i~--~~d-~~g~~~w~--~ 681 (829)
+.+. ++.|.+|..++..|+. +..... +.+..+.+.++.++..+|++... ..|. .+| .+|++... .
T Consensus 207 ~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 207 LVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred EEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 7664 7888888777643442 222211 11223556777788888887542 2344 445 44544321 1
Q ss_pred ecCCceeecCcccccCCCeEEEEeeCC---eEEEEeCCCCcEE
Q 003331 682 RTGGPIFAGPCTSFALPSQVLICSRNG---SIYSFEQESGNLL 721 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~t~~g---~l~~~d~~tG~~~ 721 (829)
.+.+. +.-.+.....++.|++...++ .+|..|.+||++.
T Consensus 287 ~teg~-~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 287 PTEGQ-FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCc-CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 22221 000011122244566665443 5788899999874
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.077 Score=60.44 Aligned_cols=287 Identities=11% Similarity=0.047 Sum_probs=135.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
.-..-++++.....+..||-..++.+-.|+.+.. -++...+.+ |...+.+++.||.|..|+. =...|. ...
T Consensus 1074 pf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~--y~~~~~--~~e 1149 (1387)
T KOG1517|consen 1074 PFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD--YADKWK--KPE 1149 (1387)
T ss_pred CCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc--cccccC--Cce
Confidence 3344566665556677888777777666654421 122333333 3345777777887777752 111120 000
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
-+.. +..-.+.+-.....|.|..|.- ..+.+++++.-..|.+||... -....
T Consensus 1150 LVTa---w~~Ls~~~~~~r~~~~v~dWqQ-----------------------~~G~Ll~tGd~r~IRIWDa~~--E~~~~ 1201 (1387)
T KOG1517|consen 1150 LVTA---WSSLSDQLPGARGTGLVVDWQQ-----------------------QSGHLLVTGDVRSIRIWDAHK--EQVVA 1201 (1387)
T ss_pred eEEe---eccccccCccCCCCCeeeehhh-----------------------hCCeEEecCCeeEEEEEeccc--ceeEe
Confidence 0000 0000011111111122222221 125566665555677788765 22222
Q ss_pred eeccCCcce-eee-eeeecCCEEEEEeeCCeEEEEc-CCC-----CEEEEeecC-CceeecCcccccCCCeEEEEeeCCe
Q 003331 639 LHELEVPAF-ASL-CITSANRHVICCLVDGHVVALD-SSG-----SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGS 709 (829)
Q Consensus 639 ~~~~~~~~~-~s~-~~~~~~~~l~~~~~~g~i~~~d-~~g-----~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~ 709 (829)
....+.... .+. +-...++.+.+|..||.+.+|| ..- -..|+-... .++..... .....+.++.|+.+|.
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGD 1280 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe-ecCCCcceeeeccCCe
Confidence 222222111 111 1112367888899999999999 422 223442211 12222211 1112346999999999
Q ss_pred EEEEeCCCCcEEEEEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccccc
Q 003331 710 IYSFEQESGNLLWEYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHM 783 (829)
Q Consensus 710 l~~~d~~tG~~~w~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~ 783 (829)
|+.||.+.....-.... ++..+. ..+ ..+...++.|+. +.|.+|+......+-...
T Consensus 1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTa-l~V-----------H~hapiiAsGs~-q~ikIy~~~G~~l~~~k~----- 1342 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTA-LTV-----------HEHAPIIASGSA-QLIKIYSLSGEQLNIIKY----- 1342 (1387)
T ss_pred EEEEecccCcccccceeeeccccCcccee-eee-----------ccCCCeeeecCc-ceEEEEecChhhhccccc-----
Confidence 99999886422111111 111111 111 123567777776 889999887543221110
Q ss_pred ceeeeeeccCCc---ccccceEEC--CEEEEeeeCCeEEEEecccccc
Q 003331 784 VQEFAKLELQGD---IFSSPVMIG--GRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 784 ~~~~~~~~~~~~---~~~s~~~~~--~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+..+.+. ..++..++- =.+.+|..|..+-.|....+++
T Consensus 1343 -----n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1343 -----NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred -----CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 0011111 112333332 2455677788888887665544
|
|
| >smart00823 PKS_PP Phosphopantetheine attachment site | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00071 Score=54.89 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcccCcce---eccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVEE---VLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~~---i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+...+...|...++... +..+.+||++|+||+.++++...+ .++...++.+||+..++.++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 12 LLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 455667777877776632 478889999999999999987653 47888899999999999988753
|
Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00015 Score=81.79 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=87.0
Q ss_pred HHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHcCCcchhhhcCCCHHHHHHHHHh----hcCCCc-----ccc-
Q 003331 295 RKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLE----KKGLCN-----LDV- 361 (829)
Q Consensus 295 ~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~pt~~~la~~l~~----~~~~~~-----~~~- 361 (829)
.+..+.+||+ ..+..+.++++||.|||+.+++...|+-....++....+++|..--.+ +.+..+ .+.
T Consensus 2010 iatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVLS~qEiRqLT~~kLqql~~~a~~~~~aa~~~~ke 2089 (2376)
T KOG1202|consen 2010 IATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVLSAQEIRQLTLRKLQQLDSKADEAPEAACPTPKE 2089 (2376)
T ss_pred HHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceeeeHHHHHHHHHHHHHHhhccCCCCccccCCCCch
Confidence 3344566776 457889999999999999999988776444444444444444322111 111000 000
Q ss_pred -----------------ccc-----cccccCcccccccccccCccccchhhhhhcccccCCccccCCcccc---------
Q 003331 362 -----------------SAD-----ANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHH--------- 410 (829)
Q Consensus 362 -----------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~--------- 410 (829)
... .......+++++|.+|+--|..-....|+++|. .|.|++|+-..
T Consensus 2090 ~~~~~~qtql~~~~~~v~~e~~~~l~~ka~~se~~~~Ffv~pIEG~tt~l~~la~rle--~PaYglQ~T~~vP~dSies~ 2167 (2376)
T KOG1202|consen 2090 DGLAQQQTQLVFRSLLVNPEGPVLLRLKAVQSEEPPLFFVHPIEGFTTALESLASRLE--IPAYGLQCTEAVPLDSIESL 2167 (2376)
T ss_pred hhHHHHHHHHHHhhhcCCccccHHHhhhhhcccCCceEEEeccccchHHHHHHHhhcC--CcchhhhccccCCcchHHHH
Confidence 000 001124455789999999998888888888876 58999987431
Q ss_pred -----cCCCCCccCCCCCC-eeeecccccee
Q 003331 411 -----HKDGLPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 411 -----~~~~~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
+.-..-+|..||++ |+|+|-|.+|+
T Consensus 2168 A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ 2198 (2376)
T KOG1202|consen 2168 AAYYIRQIRKVQPEGPYRLAGYSYGACLAFE 2198 (2376)
T ss_pred HHHHHHHHHhcCCCCCeeeeccchhHHHHHH
Confidence 00011234449999 99999999987
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0022 Score=72.85 Aligned_cols=175 Identities=17% Similarity=0.230 Sum_probs=104.3
Q ss_pred CcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 003331 88 NCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 163 (829)
Q Consensus 88 ~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 163 (829)
+..+.+++++. ..++.|||||.++++..+|+.-+..|...|...+....- ...+...|.|||=+|+++++ .+
T Consensus 511 ~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~---~~~~n~~FmRtGLlGFv~~g-ki 586 (1363)
T KOG3628|consen 511 DATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSG---KPPSNVPFMRTGLLGFVHNG-KI 586 (1363)
T ss_pred ceEEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccC---CCCccchhhhhcceeeeeCC-eE
Confidence 34455666555 356779999999999999999998888888765543211 12234578899999998654 55
Q ss_pred EEEeec-CCcEEECCeeeChHHHH----------HHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHH
Q 003331 164 VFLGRK-DRTIKINGQRMALEEIE----------HTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSI 232 (829)
Q Consensus 164 ~~~GR~-dd~ik~~G~~i~~~~iE----------~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l 232 (829)
+++|-+ |....+.|.+.+..+|- .+.+..+.|-++.++- + +.++..++-++.....+. .+-+
T Consensus 587 ~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf~--~----E~~~Vv~~esP~a~e~~~-~q~~ 659 (1363)
T KOG3628|consen 587 YVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAFE--D----EHIVVVVLESPDATEENS-FQWM 659 (1363)
T ss_pred EEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeeee--c----ceEEEEEEeCcchhhhhh-hhHH
Confidence 555554 44445588887766553 3334567777777775 1 233333333333221111 1111
Q ss_pred HHHHHhcCCCCCcCCe---EEEeCcccCCCCCCcchhhhccccc
Q 003331 233 KSWVSSKLPLAMIPNR---FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 233 ~~~l~~~l~~~~~p~~---~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.+-++.....+.+-.. ++.-..||+|+-|-|.-..+++.+.
T Consensus 660 ~~v~q~l~~iHqv~vyCilivP~~tLPrt~~~Gi~~~~~k~~F~ 703 (1363)
T KOG3628|consen 660 SRVFQALDSIHQVGVYCILIVPANTLPRTPLGGIHNNECKQAFL 703 (1363)
T ss_pred HHHHHHHHHHhcccceEEEEeccccCCCccccccccHHHHHHHH
Confidence 2222222222333222 3334679999988788777776654
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=5e-05 Score=75.58 Aligned_cols=76 Identities=12% Similarity=-0.002 Sum_probs=60.0
Q ss_pred cccccccCccccchhhhhhcccccC-CccccCCcccccCCCCCccCC-------------------CCCC-eeeeccccc
Q 003331 375 KEHQFHSGYSRTENHAVVSKRLKVN-STKYFKPELHHHKDGLPWNLS-------------------SVPM-SCSFSRCNK 433 (829)
Q Consensus 375 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~y~~~~~~~~~~~~~~~~~-------------------~~~~-~~s~~~~~~ 433 (829)
++||+|++.|.+..|..|++.|+.+ .++|+++.++.. ...+...+ ||.| |||+||.+|
T Consensus 2 ~lf~~p~~gG~~~~y~~la~~l~~~~~~v~~i~~~~~~-~~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA 80 (229)
T PF00975_consen 2 PLFCFPPAGGSASSYRPLARALPDDVIGVYGIEYPGRG-DDEPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILA 80 (229)
T ss_dssp EEEEESSTTCSGGGGHHHHHHHTTTEEEEEEECSTTSC-TTSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHH
T ss_pred eEEEEcCCccCHHHHHHHHHhCCCCeEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHH
Confidence 6899999999999999999999998 999999998743 22222233 8999 999999999
Q ss_pred ee--ecccccccccccccee
Q 003331 434 VM--HEEKIRGNDLCGVNWS 451 (829)
Q Consensus 434 ~~--~~~~~~~~~~~~~~~~ 451 (829)
++ .+++.++..+.+..+.
T Consensus 81 ~E~A~~Le~~G~~v~~l~li 100 (229)
T PF00975_consen 81 FEMARQLEEAGEEVSRLILI 100 (229)
T ss_dssp HHHHHHHHHTT-SESEEEEE
T ss_pred HHHHHHHHHhhhccCceEEe
Confidence 98 6666677766655544
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.062 Score=52.93 Aligned_cols=100 Identities=9% Similarity=0.069 Sum_probs=72.9
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcc
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPA 646 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~ 646 (829)
-.+.+|+.-|.|+.+|..++++.-.+..++..++.+-..+ +.+.|+.++.|..|..||+++ ...+--+. .+...
T Consensus 106 p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGHRDE 183 (385)
T ss_pred eeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccccCc
Confidence 3456677889999999999988877766665544443333 235788899999999999998 65554432 23344
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+..+..++.++..+..|-.|..|+
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEe
Confidence 56777777888898888888888887
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.16 Score=54.54 Aligned_cols=194 Identities=16% Similarity=0.138 Sum_probs=127.4
Q ss_pred CCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEEEEEecCCe
Q 003331 484 DSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 484 d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
+.+.++|+.+. ++.+..+|..+-+..-....+. ......+..+++.+|+... ++.+..+|..++++.-+...+..
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 45667888774 3779999987777665555443 2235677788889999876 58899999999998776554432
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEecC---CeEEEEEc
Q 003331 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVASTS---GRLTAISV 629 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~ 629 (829)
. ...+++++++.+|+.. .++.+..+|.++- .+|+ ... +..-....++.++..+|+.... +.+..+|.
T Consensus 162 P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 162 P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred c-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 2 4455666778788875 5688999996554 4443 111 1112334566667888887655 47888888
Q ss_pred cCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeec
Q 003331 630 KALPFHTLWL-HELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 630 ~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~ 683 (829)
.+ +...+. ..............+++..+|+.... +.+..+| .+..+.-....
T Consensus 239 ~~--~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 239 AT--GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred CC--ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 77 776665 22222122344566678888887544 7888888 66666544443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0059 Score=60.88 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=98.2
Q ss_pred cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC-CcEEEEEEeCCEEEEEE
Q 003331 471 ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD-FSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 471 ~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d 544 (829)
|-.++=||. ..+.+..|.-.+.|+.|.+.+|. |.+... ...+-....++. .+.+..++-||.|..||
T Consensus 214 Gy~LdWSp~-----~~g~LlsGDc~~~I~lw~~~~g~--W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWD 286 (440)
T KOG0302|consen 214 GYGLDWSPI-----KTGRLLSGDCVKGIHLWEPSTGS--WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWD 286 (440)
T ss_pred ceeeecccc-----cccccccCccccceEeeeeccCc--eeecCccccccccchhhhccCCccCceEEeeecCceEEEEE
Confidence 345666785 36778888777889999998876 765421 111112233332 34556667799999999
Q ss_pred cCCCc---EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC---CeEEEeeccCCcccccceeecCC-CEEEE
Q 003331 545 YLTGD---IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---YRCVYKLPCGGSIFGSPAIDEVH-DVLYV 617 (829)
Q Consensus 545 ~~tG~---~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~~~-~~l~v 617 (829)
...|. .+.+...++.+. ..-+......|..|+.+|.+..||+++ |+++-.++.+...+.++-..+.+ ..+.+
T Consensus 287 iRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 287 IRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred ecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 99883 333322222222 222333344688899999999999864 56666676666666666665433 56677
Q ss_pred EecCCeEEEEEccC
Q 003331 618 ASTSGRLTAISVKA 631 (829)
Q Consensus 618 ~t~~g~l~~~~~~~ 631 (829)
++.|.++..||+..
T Consensus 366 sg~D~QitiWDlsv 379 (440)
T KOG0302|consen 366 SGEDNQITIWDLSV 379 (440)
T ss_pred ccCCCcEEEEEeec
Confidence 77888999998663
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.34 Score=48.79 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=133.7
Q ss_pred EEEEEEeC----CEEEEEEcC--CCcEEEEEec-CC-eeeeeeeeecCCCEEEEecc---CCeE--EEEEcCCCeEEEe-
Q 003331 530 QVVVGCYK----GKIYFLDYL--TGDIYWTFQT-CG-EVKCQPVVDAPRQLIWCGSH---DHNL--YALDFRNYRCVYK- 595 (829)
Q Consensus 530 ~v~vg~~d----g~l~~~d~~--tG~~~w~~~~-~~-~~~~~~~~~~~~~~i~~gs~---~g~l--~~~d~~tg~~~w~- 595 (829)
.+|+|++. ..||.|+.. +|++ |..+. .. ....-..+.++...+|++-. .|++ |.+|..+|++-..
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 57888875 467777654 4543 22211 11 11122344556668888744 3555 5556666866443
Q ss_pred -eccCCcccccceeecCCCEEEEEecC-CeEEEEEccCCCceEEEeec---cCC---------cceeeeeeeecCCEEEE
Q 003331 596 -LPCGGSIFGSPAIDEVHDVLYVASTS-GRLTAISVKALPFHTLWLHE---LEV---------PAFASLCITSANRHVIC 661 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~---~~~---------~~~~s~~~~~~~~~l~~ 661 (829)
....+...+...+++++..|+++... |.|.++-+++ .|...-..+ ... +......+.+++.++++
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~-dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v 161 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQA-DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVV 161 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEccc-CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEE
Confidence 33344444666778877789988875 4455555543 254322111 111 11233456667777777
Q ss_pred Eee-CCeEEEEc-CCCCEEEEeecCCceeecCc-c-cccCCCeEEEEee-CCeEEEEeCCC--CcEEEEEe---cCCccc
Q 003331 662 CLV-DGHVVALD-SSGSIIWRCRTGGPIFAGPC-T-SFALPSQVLICSR-NGSIYSFEQES--GNLLWEYS---VGDPIT 731 (829)
Q Consensus 662 ~~~-~g~i~~~d-~~g~~~w~~~~~~~~~~~~~-~-~~~~~~~i~~~t~-~g~l~~~d~~t--G~~~w~~~---~~~~~~ 731 (829)
..- ...|+.|+ .+|++.-.....-+.-+.|- + ........|+.++ +++|-+|..+. |++.--.. .+....
T Consensus 162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 653 34688888 77765422221111111111 1 1112345666654 66666665444 55532111 111111
Q ss_pred cccccccccccccccccCCCcEEEEEccCC-cEEEEEee--cCccccccccccccceeeeeeccCCcccccceE--ECCE
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSG-SIHILRVN--LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGR 806 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~ 806 (829)
......+ -....++.++|+....- .|.+|..+ ++. ..........+..-....+ .++.
T Consensus 242 g~~~~aa------Ihis~dGrFLYasNRg~dsI~~f~V~~~~g~-----------L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 242 GTNWAAA------IHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------LELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred CCCceeE------EEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------EEEEEEeccCCcCCccceeCCCCCE
Confidence 1100000 01123477888776532 35555443 221 1222222333322222222 3456
Q ss_pred EEEeeeCC---eEEEEeccccccc
Q 003331 807 VFVGCRDD---YIYCIALETQHLE 827 (829)
Q Consensus 807 l~vg~~~g---~l~~~d~~tg~~~ 827 (829)
|++...++ .+|..|.+||++.
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceEE
Confidence 66665433 5677788899875
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.26 Score=48.19 Aligned_cols=183 Identities=10% Similarity=0.138 Sum_probs=108.7
Q ss_pred CCCEEEEeccCCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
.++.+|++.++.+|..+|+.+-. ++-.+...+. .-.+.-.++..|++..+..+..+|..+.+ ++.-.-....+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gy---aygv~vsGn~aYVadlddgfLivdvsdps-sP~lagrya~~ 170 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGY---AYGVYVSGNYAYVADLDDGFLIVDVSDPS-SPQLAGRYALP 170 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCce---EEEEEecCCEEEEeeccCcEEEEECCCCC-CceeeeeeccC
Confidence 35789999999999999987642 2222222111 11122235889999877778888877622 22111111111
Q ss_pred ceeeeeeeecCCEEEEEeeCCeEEEEc-CC---CCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 646 AFASLCITSANRHVICCLVDGHVVALD-SS---GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~---g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
...+-.+...+++.|++..++++..+| .+ -.++-++.++..+.+. ...+++.|+.-.+-++...|..+-+-.
T Consensus 171 ~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv----~vsdnr~y~vvy~egvlivd~s~~ssp 246 (370)
T COG5276 171 GGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSV----SVSDNRAYLVVYDEGVLIVDVSGPSSP 246 (370)
T ss_pred CCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEE----EecCCeeEEEEcccceEEEecCCCCCc
Confidence 111123344688999999999999999 42 3445555555444333 223667888877778999998877766
Q ss_pred EEEec---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 722 WEYSV---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|.+.. .++...+ .....+.+.|+...+.++-+.|..+.
T Consensus 247 ~~~gsyet~~p~~~s------------~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 247 TVFGSYETSNPVSIS------------TVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred eEeeccccCCccccc------------ceecccceeeeeccccCceeEeccCC
Confidence 65432 2221111 11233778888888877888877643
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00062 Score=73.18 Aligned_cols=188 Identities=12% Similarity=-0.006 Sum_probs=114.8
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
..+..|..+..+-.|....-..+-.+..+...+-+..+..+...|..|+.+|.|..||++.++++.+...+-....+..+
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 34555555544333332111111234455555556777777778889999999999999999987765444332333335
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
.+...+..-|+.|..+..||.+...+...+..+........+.+++..+..++.+..+.+||... |+..-.++.+...
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a--gk~~~ef~~~e~~ 198 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA--GKLSKEFKSHEGK 198 (825)
T ss_pred ccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc--ccccccccccccc
Confidence 55444444478889999999986667777765444445555666566777888889999999877 8877666533322
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
..+..+.+.+-.+--|+.+..+-.|| .+-+
T Consensus 199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ccccccCchhhhhccCCCCceeeeeccceeE
Confidence 22222322222334455566666666 4433
|
|
| >PRK09184 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0012 Score=53.18 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHhcccCc-----ceeccCCCccc--cCCChHHHHHHHHHc----CCcc-----hhhhcCCCHHHHHHHHH
Q 003331 288 SDLLQVIRKAFGHALMV-----EEVLHHDNFFT--MGGNSIAAAHVAHNL----GIDM-----RLIYNFPTPSKLEIALL 351 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~-----~~i~~~~~Ff~--lGgdSl~a~~l~~~l----~~~~-----~~~~~~pt~~~la~~l~ 351 (829)
+++++.++++..+.|++ ++|.++..||. +|.|||.++.|...+ ++.+ ..+..++|+..|+.++.
T Consensus 5 ~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~ 84 (89)
T PRK09184 5 TALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVA 84 (89)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHH
Confidence 46788899999888874 56889999865 999999999988654 4433 33667899999999998
Q ss_pred hhc
Q 003331 352 EKK 354 (829)
Q Consensus 352 ~~~ 354 (829)
++.
T Consensus 85 ~~~ 87 (89)
T PRK09184 85 AHR 87 (89)
T ss_pred Hhh
Confidence 754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.049 Score=61.57 Aligned_cols=207 Identities=9% Similarity=0.150 Sum_probs=98.6
Q ss_pred cEEEEECCCCcEEEEEE--cCCceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-eeeeeeeee
Q 003331 497 KFICADAKRSSVLWEIK--LEGRIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG-EVKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~ 567 (829)
.+.+||+.+++ |..- .+.......+...++...++|+.+ ..+++||+.+.+ |..-..- .........
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeEE
Confidence 57889988775 6532 222211112233343344445532 358899987763 7532210 011111111
Q ss_pred cCCCEEEE-eccCC-----eEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEE-ecC----------------
Q 003331 568 APRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVA-STS---------------- 621 (829)
Q Consensus 568 ~~~~~i~~-gs~~g-----~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~-t~~---------------- 621 (829)
.-++.||+ |+.++ .+.+||+.+. .|..-.. .... ...+.. ++.||+. +.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~ 424 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDM 424 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccc
Confidence 12356665 55443 4889998876 4775332 1111 112222 3777763 322
Q ss_pred -------CeEEEEEccCCCceEEEeeccCCcc-eeeeeeeecCCEEEE-EeeC------CeEEEEc-CC-CCEEEEeecC
Q 003331 622 -------GRLTAISVKALPFHTLWLHELEVPA-FASLCITSANRHVIC-CLVD------GHVVALD-SS-GSIIWRCRTG 684 (829)
Q Consensus 622 -------g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~-~~~~------g~i~~~d-~~-g~~~w~~~~~ 684 (829)
..+.+||+.+ -.|..-...+. ........-++.||+ |+.+ ..+.+|| .+ . .|+.-..
T Consensus 425 ~~~~~~~~~ve~YDP~t----d~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~ 498 (557)
T PHA02713 425 EEDTHSSNKVIRYDTVN----NIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITT 498 (557)
T ss_pred cccccccceEEEECCCC----CeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccc
Confidence 2477888876 35765332211 111222233555655 4322 2367888 44 2 3764322
Q ss_pred C--ceeecCcccccCCCeEEEE-eeCC--eEEEEeCCCCc
Q 003331 685 G--PIFAGPCTSFALPSQVLIC-SRNG--SIYSFEQESGN 719 (829)
Q Consensus 685 ~--~~~~~~~~~~~~~~~i~~~-t~~g--~l~~~d~~tG~ 719 (829)
- +..... ....++.||+. +.+| .+-+||+.+.+
T Consensus 499 m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 499 TESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence 1 111111 12236677754 4455 57777776653
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0012 Score=42.13 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=25.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEI 512 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~ 512 (829)
.++.+|+++.+|.++++|..+|+.+|++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4668999999999999999999999985
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.02 Score=60.84 Aligned_cols=120 Identities=8% Similarity=0.048 Sum_probs=93.0
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
...+..|+..|.|..|+...|++.|++..+. ..+.......+-+.+|.++.|..+..|+.++++.............+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 3467889999999999999999999987543 22333333455568999999999999999999887666656666677
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
.++.++++.+.+++ +.|..||.++++.+-+|..++....+..
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~ 191 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS 191 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE
Confidence 77777778888776 5799999999999999988776555443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.64 Score=49.64 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=101.4
Q ss_pred CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-eeeeeeecCCEEEEEeeCCeEEEEc-C----------------
Q 003331 612 HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCLVDGHVVALD-S---------------- 673 (829)
Q Consensus 612 ~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~~~~~~g~i~~~d-~---------------- 673 (829)
.+.|.|-+.||.+..|+-+. ......++.-.. .........+.+++++.+..+.+|. +
T Consensus 145 ~~~IcVQS~DG~L~~feqe~----~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES----FAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTE 220 (418)
T ss_pred ceEEEEEecCceEEEEeCCc----EEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccc
Confidence 46788999999999998664 222332222111 2223444556666666666666653 1
Q ss_pred ----CCC---EEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc-ccccccccccc
Q 003331 674 ----SGS---IIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS-AYIDEHLQLKL 744 (829)
Q Consensus 674 ----~g~---~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~~~~~~ 744 (829)
+++ .-|.+..+..+....++... ....|++-+. .++++++ .+|+++|..+.+-...+. ++....
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~-~~G~l~~~krLd~~p~~~~~Y~~~~----- 293 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLK-DNGSLRFQKRLDYNPSCFCPYRVPW----- 293 (418)
T ss_pred ccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEec-ceEEEEc-CCCeEEEEEecCCceeeEEEEEeec-----
Confidence 223 24898888876655443321 2234555443 4699999 479999987765432221 111100
Q ss_pred ccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE----ECCEEEEeeeCCeEEE
Q 003331 745 ESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM----IGGRVFVGCRDDYIYC 818 (829)
Q Consensus 745 ~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~~l~vg~~~g~l~~ 818 (829)
.........+.+++.++.|.+|.-. ++.|...++...+.--+. .+|.|.+-+.+|.|-+
T Consensus 294 ~~~~~~~~~llV~t~t~~LlVy~d~---------------~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 294 YNEPSTRLNLLVGTHTGTLLVYEDT---------------TLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSV 356 (418)
T ss_pred ccCCCCceEEEEEecCCeEEEEeCC---------------eEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEE
Confidence 0000012358899999999999533 667777764432221111 2566666666776654
|
|
| >COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0016 Score=47.95 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=43.3
Q ss_pred cceeccCCCccccCCChHHHHHHHHHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 304 VEEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 304 ~~~i~~~~~Ff~lGgdSl~a~~l~~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+++|....|.||+.+|+|+.++ .++...+.++||+.+--..+....
T Consensus 15 ~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~G~~i~F~~La~~PTl~aW~qLl~~~~ 70 (74)
T COG3433 15 VEELDDQENLIDYGLDSIRMMALLERWRKRGADIDFAQLAANPTLAAWWQLLSTRS 70 (74)
T ss_pred hhhcCchhhHHHhchhHHHHHHHHHHHHHcCCcccHHHHHhCccHHHHHHHHHhcc
Confidence 366888899999999999999999876 488899999999998777766543
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.19 Score=55.39 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=95.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEE--eeCC--cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAV--LADF--SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~--~~~~--~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.-.|.++..+|+|..+|...+..+-.+..+.......+. ..+. ..+.+-.....|..||..||+..|+++....+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 345667777899999998887655333333222122222 1121 244454556789999999999999998877776
Q ss_pred eeeeeec--CCCEEEEeccCCeEEEEEc-C------CCeEEEeecc-------------CCccccc------------ce
Q 003331 562 CQPVVDA--PRQLIWCGSHDHNLYALDF-R------NYRCVYKLPC-------------GGSIFGS------------PA 607 (829)
Q Consensus 562 ~~~~~~~--~~~~i~~gs~~g~l~~~d~-~------tg~~~w~~~~-------------~~~~~~~------------~~ 607 (829)
+..-+++ ....++.|+ .|.+...+. . .|+....... +....+. ..
T Consensus 159 s~f~~DPfd~rh~~~l~s-~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 159 SCFRVDPFDSRHFCVLGS-KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeCCCCcceEEEEcc-CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 6444433 223333333 344443332 1 1222221111 0011111 11
Q ss_pred eecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 608 IDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 608 ~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+.+....+.+.+....++.+|++- -..+-...... ..|....+....+.+|+.-.+|.+..+-
T Consensus 238 f~p~~rn~lfi~~prellv~dle~--~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 238 FSPHWRNILFITFPRELLVFDLEY--ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred cChhhhceEEEEeccceEEEcchh--hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 233334444555566799999875 33444433322 2233444444556677776677665543
|
|
| >TIGR00517 acyl_carrier acyl carrier protein | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0018 Score=51.19 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++.+.++++.++.++.+ .+.++.+|+ ++|.|||..++|...+ .++...+...+|+..++.++.++
T Consensus 3 ~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 3 EIFEKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred HHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 56778888888888774 588888986 6999999999998765 36778899999999999998764
|
S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.2 Score=49.22 Aligned_cols=238 Identities=12% Similarity=0.048 Sum_probs=132.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEE----EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEc---CCCcEE--
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLW----EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDY---LTGDIY-- 551 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w----~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~---~tG~~~-- 551 (829)
++.++..+...+.|+.|..|+.++=...- +.+++-.-...+.+++|-.-+++.+. ...||.|.. ++|..-
T Consensus 94 FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~ 173 (420)
T KOG2096|consen 94 FSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHH 173 (420)
T ss_pred EcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcc
Confidence 34467788888899999999987622110 01111111224556666555555544 345665542 234322
Q ss_pred ---EE-EecC---CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 552 ---WT-FQTC---GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 552 ---w~-~~~~---~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
|. .+.+ .......-..+...+|..++.|..|..||.+ |+.+-.++..........+++++..|.+....-.+
T Consensus 174 ~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 174 FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCc
Confidence 21 0011 1111112223445667778888899999988 88888877765555556677766667666655556
Q ss_pred EEEEcc-CCCceE-----EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEee-------cCC-c---e
Q 003331 625 TAISVK-ALPFHT-----LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCR-------TGG-P---I 687 (829)
Q Consensus 625 ~~~~~~-~~~g~~-----~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~-------~~~-~---~ 687 (829)
.+|.+- ++.|+. ....+.+.......+++.+..++...+.||....||.+= .++.. .+. + .
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV--rY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV--RYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc--eEecCCCchHhhcCCcchhhc
Confidence 666542 112432 122222333345567777788889999999998887221 11111 110 0 0
Q ss_pred eecCc-ccccCCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 688 FAGPC-TSFALPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 688 ~~~~~-~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
-+.|+ +....++.++..+....|..|..++|+..-
T Consensus 331 g~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYP 366 (420)
T ss_pred CCCceEEEeCCCCcEEEeecCCceEEEEcccCccch
Confidence 11111 112235677777777789999988887653
|
|
| >PRK05883 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0027 Score=51.59 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
...++..++.+++++.|++ ..|.++++|+ ++|.|||..+.+...| +++...+...+|+..|+.++..+.
T Consensus 11 ~~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~ 88 (91)
T PRK05883 11 SPSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKV 88 (91)
T ss_pred CHHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHc
Confidence 4567889999999999987 5688999995 7999999988887654 477888999999999999998754
|
|
| >PRK12449 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0021 Score=51.22 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++.+++.+++++.++. ..+.++.+|. ++|.||+..++|...+ .++...+.+.+|+..++.++.++
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~ 78 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQR 78 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 45677888888888875 4688899996 9999999999988765 36778899999999999999764
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.18 Score=55.84 Aligned_cols=144 Identities=15% Similarity=0.219 Sum_probs=80.4
Q ss_pred CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc---eeeeeeeec
Q 003331 579 DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA---FASLCITSA 655 (829)
Q Consensus 579 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~---~~s~~~~~~ 655 (829)
....+.+| .+|.++|............... .++.+++++. ..++.+|.. |+.+|.+...... .......++
T Consensus 127 ~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l-~nG~ll~~~~-~~~~e~D~~---G~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 127 SSYTYLID-NNGDVRWYLPLDSGSDNSFKQL-PNGNLLIGSG-NRLYEIDLL---GKVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp EEEEEEEE-TTS-EEEEE-GGGT--SSEEE--TTS-EEEEEB-TEEEEE-TT-----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CceEEEEC-CCccEEEEEccCccccceeeEc-CCCCEEEecC-CceEEEcCC---CCEEEeeecCCcccccccccEECCC
Confidence 56789999 7799999987654332222222 3466777665 679999987 8999998877633 344555566
Q ss_pred CCEEEEEee-------------CCeEEEEcCCCCEEEEeecCCce---ee---------c-------------Cccc-cc
Q 003331 656 NRHVICCLV-------------DGHVVALDSSGSIIWRCRTGGPI---FA---------G-------------PCTS-FA 696 (829)
Q Consensus 656 ~~~l~~~~~-------------~g~i~~~d~~g~~~w~~~~~~~~---~~---------~-------------~~~~-~~ 696 (829)
++.++.+.. ...|+-+|.+|+++|........ .. . ..+. ..
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 667766662 34577788899999876532111 00 0 0011 12
Q ss_pred CCCeEEEEeeCC-eEEEEeCCCCcEEEEEecCC
Q 003331 697 LPSQVLICSRNG-SIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 697 ~~~~i~~~t~~g-~l~~~d~~tG~~~w~~~~~~ 728 (829)
.++.|++.+... .|..+|.+++++.|.+-.+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 367788887754 89999999999999886544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.084 Score=53.01 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCeEEEEeeCCeEEEEeCCCCcE---EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003331 698 PSQVLICSRNGSIYSFEQESGNL---LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
++.+..++-||.|..||.+.+.. +.....++.+....+.. ...+|+.|..+|.+.+||++.-..+
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr------------~~~lLasG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNR------------REPLLASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccC------------CcceeeecCCCceEEEEEhhhccCC
Confidence 45666778899999999998833 32322333332222221 2458999999999999999854333
Q ss_pred cccccccccceeeeeeccCCcccccceEE---CCEEEEeeeCCeEEEEeccc
Q 003331 775 KENQSKDHMVQEFAKLELQGDIFSSPVMI---GGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~l~vg~~~g~l~~~d~~t 823 (829)
+....++.+..-+++.-.. +..+-+++.|+.+..||+..
T Consensus 338 ----------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 ----------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ----------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 2334444443333333332 56777888899999999854
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.072 Score=58.85 Aligned_cols=142 Identities=18% Similarity=0.274 Sum_probs=80.4
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee---eeeeeeecCCC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---KCQPVVDAPRQ 571 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~ 571 (829)
.+..+++|. +|.++|................+ +.++++.. ..++.+| -.|+++|.+..++.. .......+.++
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~n-G~ll~~~~-~~~~e~D-~~G~v~~~~~l~~~~~~~HHD~~~l~nGn 202 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPN-GNLLIGSG-NRLYEID-LLGKVIWEYDLPGGYYDFHHDIDELPNGN 202 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE-TT-S-EEEEEB-TEEEEE--TT--EEEEEE--TTEE-B-S-EEE-TTS-
T ss_pred CceEEEECC-CccEEEEEccCccccceeeEcCC-CCEEEecC-CceEEEc-CCCCEEEeeecCCcccccccccEECCCCC
Confidence 567899996 59999998776543222334444 45666654 8899999 579999998877633 22223344455
Q ss_pred EEEEecc-------------CCeEEEEEcCCCeEEEeeccCCcc---------------------------cccceeecC
Q 003331 572 LIWCGSH-------------DHNLYALDFRNYRCVYKLPCGGSI---------------------------FGSPAIDEV 611 (829)
Q Consensus 572 ~i~~gs~-------------~g~l~~~d~~tg~~~w~~~~~~~~---------------------------~~~~~~~~~ 611 (829)
.++.+.. ...|..+| .+|+++|........ ..++.+++.
T Consensus 203 ~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 203 LLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred EEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 6665551 24689999 999999986542100 123345555
Q ss_pred CCEEEEEecC-CeEEEEEccCCCceEEEeeccC
Q 003331 612 HDVLYVASTS-GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 612 ~~~l~v~t~~-g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
++.|++.+.. ..|+.+|..+ ++..|....+
T Consensus 282 dd~iivSsR~~s~V~~Id~~t--~~i~Wilg~~ 312 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRT--GKIKWILGPP 312 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TT--S-EEEEES-S
T ss_pred CCeEEEEcCcceEEEEEECCC--CcEEEEeCCC
Confidence 6778887774 4799999777 9999988654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.013 Score=61.64 Aligned_cols=209 Identities=13% Similarity=0.053 Sum_probs=113.9
Q ss_pred ccccccccccccccc-cccccceEEeeCCCeEEEEecCCCcEEEEEC------CCCc---EEE-EEEcCCceeeceEEee
Q 003331 458 KRGFIQELWKVHMES-CVDASPLVVLKDSDIYLFVGSHSHKFICADA------KRSS---VLW-EIKLEGRIECSAAVLA 526 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~-~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~------~tg~---~~w-~~~~~~~~~~~~~~~~ 526 (829)
....++.+|+|.-.+ .|. +|+.......+|.|++||.|.+|+. .+.. .+- .+..+..-.....++.
T Consensus 330 ~~~~~epi~tfraH~gPVl---~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 330 AEKDVEPILTFRAHEGPVL---CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred cccceeeeEEEecccCceE---EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc
Confidence 345677778887433 222 1222345789999999999999943 2211 110 1111112222344555
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee--eeeeeecCCCEEEEeccCCeEE-EEEcCCCeEEEeeccC---C
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK--CQPVVDAPRQLIWCGSHDHNLY-ALDFRNYRCVYKLPCG---G 600 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~i~~gs~~g~l~-~~d~~tg~~~w~~~~~---~ 600 (829)
...++...+.||+++.|+...... -+|.....-. .+.-+....-.+.+.+..-..+ .+|.+++..+..+... +
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~ 485 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG 485 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc
Confidence 555788888899999999665555 2332221111 1111111110111111111112 2223333322222111 0
Q ss_pred ----cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 601 ----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
......+..+..+..|.+-.++.+..+|-.+ |+++.........+.+.++.+++.++..++.++.+..+.
T Consensus 486 ~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~--~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT--GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccCccceEEecCCCCeeEecccCCceecccccc--cccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 1112223334456777788888899998777 888877766666677888888888888898888887765
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0036 Score=39.86 Aligned_cols=27 Identities=44% Similarity=0.789 Sum_probs=24.6
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
++.+|+++.++.|+++|.++|+++|++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 358999999999999999999999975
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.12 Score=58.58 Aligned_cols=29 Identities=7% Similarity=0.205 Sum_probs=20.8
Q ss_pred cceEECCEEEE-eeeCC--eEEEEeccccccc
Q 003331 799 SPVMIGGRVFV-GCRDD--YIYCIALETQHLE 827 (829)
Q Consensus 799 s~~~~~~~l~v-g~~~g--~l~~~d~~tg~~~ 827 (829)
..++.+++||+ |+.+| .+.+||+.+++..
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 44557888887 45565 6889999888753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.4 Score=51.75 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=87.2
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE-eccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCE
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~ 614 (829)
..+|.+|.++|+..-.....+ ....|.+.+++..|.+ ...+| .||.+|..+++ +++......+...|.+.+++..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSK 295 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCE
Confidence 359999999887655444332 3345666666655544 44444 48999988766 5665555556668889888888
Q ss_pred EEEEecCC---eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-Ce--EEEEc-CCCCEEEEeecC
Q 003331 615 LYVASTSG---RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GH--VVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 615 l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~--i~~~d-~~g~~~w~~~~~ 684 (829)
|+..+..+ .|+.++++. ...-++.........+.++++++.+.+.+.. |. +..+| .++.. |+.-..
T Consensus 296 ivf~Sdr~G~p~I~~~~~~g---~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~ 368 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDLEG---SQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTS 368 (425)
T ss_pred EEEEeCCCCCcceEEECCCC---CceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccc
Confidence 87776543 488888875 3223333333323367778888888777643 33 55566 44443 554433
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.062 Score=56.35 Aligned_cols=150 Identities=8% Similarity=0.065 Sum_probs=84.8
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
+.+.+.+.||.+..++ ++|++....+.+.....+.-+.+++.-+++.+.||.+..|. ++|-+.-.....+....+...
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 3577888899999998 78888766665544444444555566677888899999998 555443222111111112222
Q ss_pred ecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecC
Q 003331 609 DEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 609 ~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~ 684 (829)
.++. ..+|+.. +.++.=.+.....-..|+.. .....+.......+.+..|..|-...+||..|..++.....
T Consensus 154 ~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ 226 (737)
T KOG1524|consen 154 APNSNSIVFCQG--GHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAE 226 (737)
T ss_pred CCCCCceEEecC--CeEEEeecccccceeEEecc--CcEEEEeecCccccceeecCCceeEEeecccCcccccCChh
Confidence 2222 3344332 33443322221234556542 22233444444566777777788888888767777655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.12 Score=57.60 Aligned_cols=203 Identities=15% Similarity=0.226 Sum_probs=100.8
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccC-C----eEEEEEcCC---C--
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHD-H----NLYALDFRN---Y-- 590 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~-g----~l~~~d~~t---g-- 590 (829)
.+++..++.|++|+.+|.|..++ ..-+.+..+...... ....-.......+++-..| + .|..||++. +
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 45667778999999999999998 333443333332211 1111112222334332222 2 356666532 1
Q ss_pred -eEE---Eeecc----CCcccccceeecCCCEEEEEecCCeEEEEE--ccCCCceEEEeecc-CCcceeeeeeeecCCE-
Q 003331 591 -RCV---YKLPC----GGSIFGSPAIDEVHDVLYVASTSGRLTAIS--VKALPFHTLWLHEL-EVPAFASLCITSANRH- 658 (829)
Q Consensus 591 -~~~---w~~~~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~--~~~~~g~~~w~~~~-~~~~~~s~~~~~~~~~- 658 (829)
.++ ..+.. ...+.++.+++.+...+.+|-.+|.|+++. +....|.. ..+.. +........+..++..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEecCCcee
Confidence 223 11111 123455566777778899999999998885 11111221 11211 1222233344444444
Q ss_pred EEEEeeCCeEEEEcCCCCE-EEE-eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 659 VICCLVDGHVVALDSSGSI-IWR-CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~-~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
+++.|. ..|..|.-+|+. .-+ ....+ .+..|........=++++.+..|+.|+.+.-+.-|.+..+..
T Consensus 187 lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 187 LFVATT-EQVMLYSLSGRTPSLKVLDNNG--ISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred EEEEec-ceeEEEEecCCCcceeeeccCC--ccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 455554 556666622332 222 22222 222333222222223344455699999887777888775544
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.94 Score=46.31 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=72.3
Q ss_pred CeEEEEecCCCcEEEEECCCC-------cEEEE--EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-------C-
Q 003331 486 DIYLFVGSHSHKFICADAKRS-------SVLWE--IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------G- 548 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg-------~~~w~--~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------G- 548 (829)
.+.+..|+.|..+..|-...+ ++... +..+.+....+-++.+|+.+..|..+|.+.+|-..+ .
T Consensus 26 ~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e 105 (434)
T KOG1009|consen 26 LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTE 105 (434)
T ss_pred ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccch
Confidence 347777777777776644332 22221 223444455666788888999999899999997551 2
Q ss_pred ----cEEEEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 549 ----DIYWTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 549 ----~~~w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
+..|... .+..-..-.+...++..+.+++-|..++.||...|+..-....+
T Consensus 106 ~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 106 ADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred hhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 3335422 11111122344556778888999999999999999887665444
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.29 Score=50.53 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=83.3
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcE-------EEEEecCCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCC--eEEEeec
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDI-------YWTFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNY--RCVYKLP 597 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~-------~w~~~~~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg--~~~w~~~ 597 (829)
.+.+..++.|+.+..||...... +-.+..+..+..-..+..-. ..+-..+.|+.|..||..++ ++.....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 35788899999999999754322 11233333322222222222 33344577899999999853 2222233
Q ss_pred cCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEEc
Q 003331 598 CGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVALD 672 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~d 672 (829)
.+...+.+..+.+-+ ..|..++.|++|..||+.+.. +.+..+............++....++ .++.++.+.+||
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 333333333443333 445667779999999998732 34445555555445555666555544 445689999999
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.1 Score=48.33 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=94.5
Q ss_pred CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec----CC---eeeeeeee
Q 003331 494 HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT----CG---EVKCQPVV 566 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~----~~---~~~~~~~~ 566 (829)
.|..||.-|-.+|+....+..+..-. -..++-++-.+..|+.|.+|.+||+.-...+.+... ++ ....+.++
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghi-lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHI-LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccE-EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 45678877877787765555443321 234455566788899999999999876666655332 12 33455566
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
++.+..+..|-.|..-..||+..|+.+.++..+...+...-+++...+++.++.+..|..-|+.
T Consensus 240 dpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 240 DPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 7666667777778888889999999999988776665556666645667778888777776666
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.24 Score=50.33 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=53.1
Q ss_pred ceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 521 SAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 521 ~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
...+++.. +.+.+++.+..|..+|.++-.+.-.+..+..+.+..---++.+.||.|..+|.|+.||...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 34454433 4688888899999999999888888877766665543334678899999999999999864
|
|
| >PRK05828 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0057 Score=48.62 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHhc-c--cCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGH-A--LMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~-~--l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.++++++.++ . +..+.+..+.+|.+||.|||..++|...| +++...+....|+..+..++....
T Consensus 4 ~eI~~~i~~ii~e~~~~~~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~ 79 (84)
T PRK05828 4 MEILLKIKEIAKKKNFAVTLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELK 79 (84)
T ss_pred HHHHHHHHHHHHHhccCCCcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHH
Confidence 4667788888876 3 34477888899999999999999998754 466677899999999999987654
|
|
| >PRK07081 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0045 Score=49.38 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=48.3
Q ss_pred HHHHHHHhccc--Cc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHhhcC
Q 003331 292 QVIRKAFGHAL--MV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLEKKG 355 (829)
Q Consensus 292 ~~l~~~~~~~l--~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~~~~ 355 (829)
+.++++..+.+ +. +.+..+.+|+++|.|||.+++|...| .++...+.. ++|+..++.++.....
T Consensus 3 ~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 3 NTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred HHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 45556666553 22 56889999999999999999998765 355565643 8999999999987653
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.052 Score=55.73 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=87.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE-------EEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCC--cEEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV-------LWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTG--DIYWTF 554 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~-------~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG--~~~w~~ 554 (829)
..+++..++.++.+..||...... +-.+..+..++.-+.+..- .+.+-..+.|+.|..||..++ +.....
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 467888999999999999764322 1123334433333333332 234445567899999999853 222223
Q ss_pred ecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccC
Q 003331 555 QTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKA 631 (829)
Q Consensus 555 ~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~ 631 (829)
..+..-.-+..+.+ ++..|.+|+.|+.|..||+.+-+ ++.++..+.........++....|+ .++.|+.+.+||+..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 33332233334443 34566778889999999998743 4445544444444444555445544 455688999999775
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.2 Score=45.51 Aligned_cols=222 Identities=15% Similarity=0.157 Sum_probs=105.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE----------
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF---------- 554 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~---------- 554 (829)
.+.+|++|+.+| |+.++.... ..|..-..........+..+-+.+++-+ |+.|+++++.+-...-..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP-SKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC-ccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 578999999988 999998222 2222222211133444545545555554 688999987654333210
Q ss_pred ---ecCCeeeeeeeee----cCCC-EEEEeccCCeEEEEEcCC--C---eEEEeeccCCcccccceeecCCCEEEEEecC
Q 003331 555 ---QTCGEVKCQPVVD----APRQ-LIWCGSHDHNLYALDFRN--Y---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 555 ---~~~~~~~~~~~~~----~~~~-~i~~gs~~g~l~~~d~~t--g---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
... .......+. ..+. .+.++. ...|..|.... + +....+.....+. +..+. ++.+.+++.+
T Consensus 83 ~~~~~~-~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~-~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 83 LPTKLP-ETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPS-SIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccc-ccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcE-EEEEe--CCEEEEEeCC
Confidence 010 011111111 1122 233333 33444443322 2 2334444443322 23333 4888888866
Q ss_pred CeEEEEEccCCCceEEEeeccCCcc---------eeee-eeeecCCEEEEEeeCCeEEEEcCCCC------EEEEeecCC
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPA---------FASL-CITSANRHVICCLVDGHVVALDSSGS------IIWRCRTGG 685 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~---------~~s~-~~~~~~~~l~~~~~~g~i~~~d~~g~------~~w~~~~~~ 685 (829)
+ .+.+|+++ +....-....... ...+ .+...++.+.++. +..-..+|..|+ +.|......
T Consensus 158 ~-f~~idl~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 G-FYLIDLNT--GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred c-eEEEecCC--CCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCcccEEEcCCchhE
Confidence 5 78889887 5544333222111 0011 1122334555543 333333444443 334322111
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003331 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
-.+. ...|++.+ ++.|-.++..+|+++-....+
T Consensus 234 ~~~~--------~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 234 VAYS--------SPYLIAFS-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred EEEE--------CCEEEEEC-CCEEEEEECcCCcEEEEEECC
Confidence 1111 22455444 456999999999887665543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.19 Score=54.89 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=69.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-EEEEec-----C
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI-YWTFQT-----C 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-~w~~~~-----~ 557 (829)
.+.++.+|+..|.||.|+..+|+.+-... ...++.+..+++.+...+.+|+..|.|..+-...+.. .-.+-+ +
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 46789999999999999998877543222 2344555666777766777888777665554443322 111111 2
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCC
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t 589 (829)
+....+..++.+...+|.|...|.|.+....+
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEech
Confidence 33445566777788899999999888776665
|
|
| >PRK07117 acyl carrier protein; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0071 Score=47.47 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHhccc-Cc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHAL-MV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l-~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++...++++..+.+ ++ ..|.++.+|.+||.|||..++++..+ +++-..+-+-.|+..+..++.++
T Consensus 4 ~ei~~~v~~ii~e~~p~i~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~ 78 (79)
T PRK07117 4 QRIFDILVRHIREVLPDLDQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAK 78 (79)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHh
Confidence 456788888888888 46 56999999999999999999987653 46777888899999999998764
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.082 Score=58.61 Aligned_cols=119 Identities=9% Similarity=0.154 Sum_probs=73.7
Q ss_pred ccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceee-ceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 466 WKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIEC-SAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 466 W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
|+-.+-+....+-+. .+....++++.|..|-+..+|++||++.|+.-+...... ...+. -++......++.||
T Consensus 28 wr~~~vG~~k~~~~~-~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~~-----~~iS~dg~~lr~wn 101 (910)
T KOG2103|consen 28 WRQQLVGVKKVNFLV-YDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPLT-----NTISVDGRYLRSWN 101 (910)
T ss_pred hhhhcccceeEEEEe-ecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCccee-----EEEccCCcEEEeec
Confidence 766654433333333 344678999999999999999999999999765543211 11111 13333344689999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
.++|.+.|.......... ..+....+..+++. +....|+..|.-..
T Consensus 102 ~~~g~l~~~i~l~~g~~~-~~~~v~~~i~v~~g-------~~~~~g~l~w~~~~ 147 (910)
T KOG2103|consen 102 TNNGILDWEIELADGFKG-LLLEVNKGIAVLNG-------HTRKFGELKWVESF 147 (910)
T ss_pred CCCceeeeecccccccce-eEEEEccceEEEcc-------eeccccceeehhhc
Confidence 999999999877655222 22222233333322 45567888887544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.051 Score=52.69 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=65.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEE--EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcC-CCcEEEE-EecCCe-
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLW--EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYL-TGDIYWT-FQTCGE- 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w--~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~-tG~~~w~-~~~~~~- 559 (829)
+..++++..+|.+...+-..+.+.- +.+.++--...+.++. +.+.||.|+.|+.+.+||.. -++.+|+ ...+..
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 3446666666666644433332211 1122221112333332 33589999999999999987 5678886 222222
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCGG 600 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~~ 600 (829)
+.+...-.+....|++|++|..+..||..+ |+++.....++
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G 254 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG 254 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCcccc
Confidence 222111122456899999999999999873 55554444433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.63 Score=46.00 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=106.6
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC-CCcEEEEEecCCeeeeeeeeec--CCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQTCGEVKCQPVVDA--PRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~--~~~~ 572 (829)
+.|..||-...+++-++.....+. ++.+.. +.|++-. .+.||.|... +-+.+..+++....+....+.+ ....
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~-~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIK-AVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEecccee-eEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 357888866666666666555442 333433 3555554 6789999876 5566666665443332222222 2233
Q ss_pred EEE-eccCCeEEEEEcCCCeEE--EeeccCCcccccceeecCCCEEEEEecCCeE-EEEEccCCCceEEEeeccCC--cc
Q 003331 573 IWC-GSHDHNLYALDFRNYRCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRL-TAISVKALPFHTLWLHELEV--PA 646 (829)
Q Consensus 573 i~~-gs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l-~~~~~~~~~g~~~w~~~~~~--~~ 646 (829)
|.+ |..-|.|...|...-+.- -.+..+...++...+.-++..|..++..|++ .+||..+ |+.+.....+. ..
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~--g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED--GTLLQELRRGVDRAD 228 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC--CcEeeeeecCCchhe
Confidence 333 444588888887654431 2334445555666666656677788888876 4678777 88877664432 33
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
....+++++...+.+.+..|++.+|.
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 45677888888999999999999887
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.16 Score=46.92 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=92.9
Q ss_pred CCeEEEEecC---CCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCe
Q 003331 485 SDIYLFVGSH---SHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.++.++.++. ...|+.+|+.+|+++|+.++.. .+. .-.+..-++.+|.-++ +|.-+.+|+.|-+++-++...++
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~F-gEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVF-GEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCcccc-ccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 3557777664 2469999999999999988772 322 2234445668998887 56668999999988887777665
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccc-eeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSP-AIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~-~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
-.. +.. ++..++.++....++.-|+++=...-+... .+...... -+.--++.+|..-+ ...|..+++++ |+
T Consensus 133 GWg--Lt~-d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~s--Gr 207 (262)
T COG3823 133 GWG--LTS-DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDS--GR 207 (262)
T ss_pred cee--eec-CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCC--Cc
Confidence 433 222 345577777677888889887544333322 11111110 01111255554332 23478888887 87
Q ss_pred EEEeecc
Q 003331 636 TLWLHEL 642 (829)
Q Consensus 636 ~~w~~~~ 642 (829)
..--++.
T Consensus 208 V~~widl 214 (262)
T COG3823 208 VVAWIDL 214 (262)
T ss_pred EEEEEEc
Confidence 6655544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.02 Score=65.53 Aligned_cols=227 Identities=14% Similarity=0.134 Sum_probs=119.8
Q ss_pred cEEEEEEeCCEEEEEEcCC---Cc---EEEEEe-cCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 529 SQVVVGCYKGKIYFLDYLT---GD---IYWTFQ-TCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~t---G~---~~w~~~-~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
|.|.-|+.||.|..||+.. +. .+-++. ..+.+.. .-|... ++.+..|..+|.|+.||..+-+.- +..+.
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~ 157 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGS 157 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceee-eeccccCCceeeccCCCCcEEEeccCCcCCC--CCCCC
Confidence 4677778899999999754 21 122222 2344443 333333 446777888999999998763221 11111
Q ss_pred c----ccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCCc--ceeeeeeeec-CCEEEEEeeCCe---EE
Q 003331 601 S----IFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFASLCITSA-NRHVICCLVDGH---VV 669 (829)
Q Consensus 601 ~----~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~-~~~l~~~~~~g~---i~ 669 (829)
. .+........- ..+..++.+|...+||++. .+.+-.+..... ..+.....++ -..+++++.+.+ |.
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~--~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviq 235 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK--KKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQ 235 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccC--CCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeE
Confidence 0 00111111111 1233456677888999886 333333322221 1123333333 235666665543 44
Q ss_pred EEc-C-CCCEEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003331 670 ALD-S-SGSIIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 670 ~~d-~-~g~~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
.|| + .-..+-.++. ...+.+...... ++..+..+..|+.+.|||.+||+++.++...++.+... .-
T Consensus 236 lWDlR~assP~k~~~~H~~GilslsWc~~-D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv----------~w 304 (1049)
T KOG0307|consen 236 LWDLRFASSPLKILEGHQRGILSLSWCPQ-DPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV----------QW 304 (1049)
T ss_pred eecccccCCchhhhcccccceeeeccCCC-CchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee----------ee
Confidence 555 2 1122222211 112333332222 23456777789999999999999998776643322111 11
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+-..-+.+.+.+-+|.|-++...+.
T Consensus 305 ~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 305 CPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred cCCCcchhhhheeccceeeeeeecC
Confidence 1222557778888999999988755
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.34 Score=44.85 Aligned_cols=140 Identities=12% Similarity=0.107 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003331 580 HNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
..|+.+|..+|+.+|...... ..+.--.. .-++.+|.-|+ +|.-+.+|+++ .+.+-.+...... -.+..++.
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit-~~gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeG---WgLt~d~~ 141 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGIT-KLGDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEG---WGLTSDDK 141 (262)
T ss_pred ceeEEEeccCceEEEEeecCCcccccccee-eccceEEEEEeccceeEEEChHH--hhhhcccccCCcc---eeeecCCc
Confidence 469999999999999887762 23322221 22578888887 45557788877 6555544443322 13445677
Q ss_pred EEEEEeeCCeEEEEc-CCCCEEEEee---cCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEec
Q 003331 658 HVICCLVDGHVVALD-SSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.++++.....++..| .+-...-+.+ .+.++....- ..-.+|.+|.-- ....|..+++++|+++-.++.
T Consensus 142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE-LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widl 214 (262)
T COG3823 142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE-LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDL 214 (262)
T ss_pred ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc-eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEc
Confidence 888887666777777 4433322222 1222222211 112355665542 245799999999999754544
|
|
| >PRK05350 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0078 Score=48.10 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+++.++.++.+++ ..+.++.+| -++|.|||..++|...| .++...+...+|+..++.++.+..
T Consensus 5 ~~i~~~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~ 80 (82)
T PRK05350 5 EEILERLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLL 80 (82)
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHh
Confidence 45677888888888876 468888886 79999999999988754 467778999999999999998754
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.031 Score=59.56 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=106.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEE-------EEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLW-------EIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w-------~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~ 556 (829)
++.++.+++.+|.|..|-...+-.-- .+..+..-+++.-+.+ ..+.+.+.++|-+|..||+.+++..-++..
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g 718 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG 718 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc
Confidence 45678899999988888765432111 1112221122222222 123577889999999999999999887776
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCccc-ccceeecCCCEEEEEecC----CeEEEEEcc
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIF-GSPAIDEVHDVLYVASTS----GRLTAISVK 630 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~-~~~~~~~~~~~l~v~t~~----g~l~~~~~~ 630 (829)
+..-....++++++..+.+-+.||.|+.|.+.+++. +..-....... +-+.+.-++..|++...+ .++..||.+
T Consensus 719 HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 719 HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 655555567787888888889999999999988743 22221111111 111222223455554433 356677776
Q ss_pred CCCceEEEeeccCC-cceeeeeeeecCCEEEEEe-eCCeEEEEc
Q 003331 631 ALPFHTLWLHELEV-PAFASLCITSANRHVICCL-VDGHVVALD 672 (829)
Q Consensus 631 ~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~~d 672 (829)
+..+..+....+.. +...-+....+.+.+++.. .|..|++|.
T Consensus 799 ~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 799 TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred hccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEE
Confidence 65555555443321 1112223333445555433 345667765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.34 Score=48.86 Aligned_cols=150 Identities=7% Similarity=0.010 Sum_probs=89.8
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC------CcEEEEEec-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLT------GDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t------G~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
..-++.++..++.|+.|-.+..|+... -+++-.... +.....+..+...+..+|.|..++.+..-|+++.+.+
T Consensus 61 AlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi 140 (609)
T KOG4227|consen 61 ALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI 140 (609)
T ss_pred eeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee
Confidence 345666667788888888888887432 222221111 1123344556666778999999999999999999888
Q ss_pred EeeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCC--ceEEEeeccCCcceeeeeeeec-CCEEEEEeeCCe
Q 003331 594 YKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP--FHTLWLHELEVPAFASLCITSA-NRHVICCLVDGH 667 (829)
Q Consensus 594 w~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~--g~~~w~~~~~~~~~~s~~~~~~-~~~l~~~~~~g~ 667 (829)
..+.... .++. ....+-++++.+.+.++.|..||..... +.+.--. .....|.+..+.+. ...+.+.+..++
T Consensus 141 ~V~~~~~~~~~VY~-m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A-N~~~~F~t~~F~P~~P~Li~~~~~~~G 218 (609)
T KOG4227|consen 141 YVANENNNRGDVYH-MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA-NSGKNFYTAEFHPETPALILVNSETGG 218 (609)
T ss_pred eeecccCcccceee-cccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-CCCccceeeeecCCCceeEEeccccCC
Confidence 8775533 2221 2222335888889999999999876421 2222211 11223344444333 334556666777
Q ss_pred EEEEc
Q 003331 668 VVALD 672 (829)
Q Consensus 668 i~~~d 672 (829)
+.+||
T Consensus 219 ~~~~D 223 (609)
T KOG4227|consen 219 PNVFD 223 (609)
T ss_pred CCcee
Confidence 77777
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.46 Score=53.65 Aligned_cols=213 Identities=15% Similarity=0.199 Sum_probs=101.9
Q ss_pred CcEEEEECCCCcEEEEE--EcCC-ceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-eeeeeee
Q 003331 496 HKFICADAKRSSVLWEI--KLEG-RIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG-EVKCQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~--~~~~-~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~-~~~~~~~ 565 (829)
..+.+||+.+++ |.. ..+. +...++++. ++...++|+++ ..+.+||+.+++ |+.-..= .......
T Consensus 301 ~~ve~yd~~~~~--w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~ 375 (571)
T KOG4441|consen 301 RSVECYDPKTNE--WSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFG 375 (571)
T ss_pred ceeEEecCCcCc--EeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccce
Confidence 468899998885 543 2222 222233333 33344457777 368899988887 8642110 1111111
Q ss_pred eecCCCEEEE-eccCC-----eEEEEEcCCCeEEEeeccCC--c-ccccceeecCCCEEEEEec-C------CeEEEEEc
Q 003331 566 VDAPRQLIWC-GSHDH-----NLYALDFRNYRCVYKLPCGG--S-IFGSPAIDEVHDVLYVAST-S------GRLTAISV 629 (829)
Q Consensus 566 ~~~~~~~i~~-gs~~g-----~l~~~d~~tg~~~w~~~~~~--~-~~~~~~~~~~~~~l~v~t~-~------g~l~~~~~ 629 (829)
+..-+|.||+ |+.+| .+-+||+.+. .|..-..- . .....+.. ++.||+.+. + ..+.+||+
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP 451 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDP 451 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcC
Confidence 1112356665 65554 4778888764 46554321 1 11112222 377776432 2 34778888
Q ss_pred cCCCceEEEeeccCCcce-eeeeeeecCCEEE-EEeeCC-----eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 630 KALPFHTLWLHELEVPAF-ASLCITSANRHVI-CCLVDG-----HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~-~~~~~g-----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
.+ -.|+.....+.. .......-++.|| +|+.++ .+.+|| .+. .|..-..-..-.+..-....++.+
T Consensus 452 ~t----~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~~~rs~~g~~~~~~~l 525 (571)
T KOG4441|consen 452 ET----NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMTSPRSAVGVVVLGGKL 525 (571)
T ss_pred CC----CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCccccccccEEEECCEE
Confidence 86 357654432211 1112222344444 444443 267788 433 255432111111111111224566
Q ss_pred EEE-eeC-----CeEEEEeCCCCcEEEEEe
Q 003331 702 LIC-SRN-----GSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 702 ~~~-t~~-----g~l~~~d~~tG~~~w~~~ 725 (829)
|+. ..+ +.+-+||+.+.+ |+..
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~--W~~~ 553 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDT--WTEV 553 (571)
T ss_pred EEEecccCccccceeEEcCCCCCc--eeeC
Confidence 644 333 357777776653 5443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.17 Score=57.80 Aligned_cols=211 Identities=15% Similarity=0.100 Sum_probs=112.2
Q ss_pred ccccccccccccc---cccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeece--EEeeCCcEEE
Q 003331 458 KRGFIQELWKVHM---ESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA--AVLADFSQVV 532 (829)
Q Consensus 458 ~~~~~~~~W~~~~---~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~--~~~~~~~~v~ 532 (829)
++..+...|+.-. .....+.-++--....|.++++..-..|..||+..-++.-....+.....+. +-...++.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 4445555565421 1223334232223456788887766789999988766655444432211111 1113467899
Q ss_pred EEEeCCEEEEEEcCCC-----cEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec--c---CCc
Q 003331 533 VGCYKGKIYFLDYLTG-----DIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP--C---GGS 601 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG-----~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~--~---~~~ 601 (829)
+|..||.|..||...- -..|+-.... .+.....-..+-+.++.|+.+|.|+.||+..-...-... . .|.
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 9999999999996542 2334322211 122211111133468999999999999987631111111 1 022
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-------ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-------AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-------~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
......+......+..|+. +.+.+|+.. |+.+-.+..... ..++..+.+..-.+.+|+.|..|.+|.
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~---G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLS---GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecC---hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 2344555554455666665 778888876 554443332211 112233333344556666677777776
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.11 Score=52.90 Aligned_cols=153 Identities=11% Similarity=-0.001 Sum_probs=87.2
Q ss_pred eeCCCeEEEEecCCCcEEEEE-CCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-cCC-
Q 003331 482 LKDSDIYLFVGSHSHKFICAD-AKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-TCG- 558 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d-~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~~~- 558 (829)
+..++..|-+|..||.+.+|+ +..-..+-....+.. +-...+++|++.|..-+.| ....|+..+|..+-+.. ...
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e-V~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~ 229 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE-VKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKD 229 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc-cccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccc
Confidence 344567888999999999999 443333322222333 3367788898776665556 78999999995443222 111
Q ss_pred eeeeeeee--ecCCCEEEEec---cCCeEEEEEcCC--C--eEEEeecc-CCcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 559 EVKCQPVV--DAPRQLIWCGS---HDHNLYALDFRN--Y--RCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 559 ~~~~~~~~--~~~~~~i~~gs---~~g~l~~~d~~t--g--~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
......-+ ++....+++.. ..+.+..+|... + -..|+... ....+++..+++++..+.+||.+|.|.+++
T Consensus 230 ~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 230 EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 11111111 11123444432 123454444321 1 11222222 223567788888889999999999999999
Q ss_pred ccCCCceEEE
Q 003331 629 VKALPFHTLW 638 (829)
Q Consensus 629 ~~~~~g~~~w 638 (829)
..+ -+.+.
T Consensus 310 ~~~--lq~~~ 317 (398)
T KOG0771|consen 310 AKS--LQRLQ 317 (398)
T ss_pred ece--eeeeE
Confidence 776 44443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.96 Score=43.22 Aligned_cols=124 Identities=10% Similarity=0.059 Sum_probs=75.8
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEec--CCeeeeeeeeecCCCEEEE--eccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEVKCQPVVDAPRQLIWC--GSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~i~~--gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
..|.|. ..||.++..+... -.... .+. .....+.+++..+.+ |.....+..||.+ ++.+..+.. .....
T Consensus 33 ks~~~~--~~l~~~~~~~~~~-~~i~l~~~~~-I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~n~ 105 (194)
T PF08662_consen 33 KSYYGE--FELFYLNEKNIPV-ESIELKKEGP-IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPRNT 105 (194)
T ss_pred ceEEee--EEEEEEecCCCcc-ceeeccCCCc-eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCceE
Confidence 444443 4688888655433 23333 223 344456666665433 4456789999986 677666643 33345
Q ss_pred ceeecCCCEEEEEec---CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 606 PAIDEVHDVLYVAST---SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
+..++++..+++++. .|.+..||.++ .+.+-..+. ........++++.++..++.
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 667777788887754 46799999886 666655433 22355667777777777654
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.8 Score=43.03 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=98.4
Q ss_pred CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC-CCeEEEeeccCCcccccceeecCC-CE-
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPCGGSIFGSPAIDEVH-DV- 614 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~-~~- 614 (829)
+.|..||-...+++-++....+++..-+ ..+.|++.. .+.+|.|... +-+.+..+..-.+.-..+++...- ..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l---~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKL---RRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEE---cCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 4699999777777777777777665432 234454443 4567777655 344555544432222222222211 22
Q ss_pred EEE-EecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE-Ec-CCCCEEEEeecCCceeecC
Q 003331 615 LYV-ASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA-LD-SSGSIIWRCRTGGPIFAGP 691 (829)
Q Consensus 615 l~v-~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~-~d-~~g~~~w~~~~~~~~~~~~ 691 (829)
|.+ |..-|.|.+.|+....-..-.....+....+...+...+..+..++..|++.. || .+|+++.++..+..-...-
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 222 33457788877664111000122223333455566667788888999998765 67 8999998877554321111
Q ss_pred cccccCC-CeEEEEeeCCeEEEEeCCC
Q 003331 692 CTSFALP-SQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 692 ~~~~~~~-~~i~~~t~~g~l~~~d~~t 717 (829)
++.+..+ ..+.+.+..|+|+.+..+.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 2222223 3566778889999887654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=96.03 E-value=2.4 Score=44.38 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=111.8
Q ss_pred cEEEEECCCCcEEEEEEcCCcee-eceE-Ee--e----CCcEEEEEEe---------C-CEEEEEEcCCC-----cE--E
Q 003331 497 KFICADAKRSSVLWEIKLEGRIE-CSAA-VL--A----DFSQVVVGCY---------K-GKIYFLDYLTG-----DI--Y 551 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~-~~~~-~~--~----~~~~v~vg~~---------d-g~l~~~d~~tG-----~~--~ 551 (829)
.|..+|..+.+.+-++.+...-. .+.+ +. . ...++++|+. . |.|+.|+..+. ++ +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 47788888888776666554311 1221 11 1 1357888864 2 88999998874 22 2
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCc-ccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~-~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
......+.+.+...+ ++.++++. ++.|+.++....+ .+-....... ...+.... ++.+++|.....+..+..
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 344556665554444 46666654 5678888877766 4443333222 22233333 479999987766776543
Q ss_pred cCCCceEEEeeccCCcc-eeeeeeeecCCEEEEEeeCCeEEEEc-C-------CCC--E--EEEeecCCceeec---Ccc
Q 003331 630 KALPFHTLWLHELEVPA-FASLCITSANRHVICCLVDGHVVALD-S-------SGS--I--IWRCRTGGPIFAG---PCT 693 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~-~~s~~~~~~~~~l~~~~~~g~i~~~d-~-------~g~--~--~w~~~~~~~~~~~---~~~ 693 (829)
+....+.........+. ..+..+..+++.++++..+|.++.+. . .+. + .-.+..+..+... ...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 32112222222222222 23344442445888888899998876 2 122 2 2334444444332 111
Q ss_pred cc-cCC-----CeEEEEeeCCeEEEEeC
Q 003331 694 SF-ALP-----SQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 694 ~~-~~~-----~~i~~~t~~g~l~~~d~ 715 (829)
.. ... ..++.+|.+|.|.++-+
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEEEe
Confidence 11 111 24888999999987755
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.029 Score=61.93 Aligned_cols=105 Identities=11% Similarity=0.051 Sum_probs=72.5
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
++++-.+.+|+.|+.|..+..|...|+..+-....+..-.....+....-.+.++++|.-|.+|.+.+|.++-....+..
T Consensus 196 a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg 275 (1113)
T KOG0644|consen 196 AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG 275 (1113)
T ss_pred eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccc
Confidence 33444567899999999999999999988876665544333445555545677788899999999999988765444433
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~ 588 (829)
...+..+.+-. ..+.||.+..||..
T Consensus 276 avtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 276 AVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred ceeeeccCccc----cCCCCCceEecccc
Confidence 33334444311 44668888888865
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.3 Score=43.01 Aligned_cols=225 Identities=13% Similarity=0.067 Sum_probs=121.4
Q ss_pred CeEEEEecCCC-cEEEEECCCCcEEEEEEcC-Cc-eeeceEEeeCCcEEEEEEe-----CCEEEEEEcC-CCcEEEEEec
Q 003331 486 DIYLFVGSHSH-KFICADAKRSSVLWEIKLE-GR-IECSAAVLADFSQVVVGCY-----KGKIYFLDYL-TGDIYWTFQT 556 (829)
Q Consensus 486 ~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~-~~-~~~~~~~~~~~~~v~vg~~-----dg~l~~~d~~-tG~~~w~~~~ 556 (829)
...|.++-.-| .+..||..+|+..-....+ ++ +..-.+++.||..+|+... .|.|-.||.. +-+.+-.+.+
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 34455555444 5778999999887544433 22 3456788999999998754 3678899987 3444445555
Q ss_pred CCeeeeeeeeecCCCEEEEe------------------ccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCCCE
Q 003331 557 CGEVKCQPVVDAPRQLIWCG------------------SHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVHDV 614 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~g------------------s~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~~~ 614 (829)
.+.-.--..+.+++..|+++ +.+-.|..+|..+|+++-+... ....+-...++. ++.
T Consensus 97 ~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~ 175 (305)
T PF07433_consen 97 HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGT 175 (305)
T ss_pred CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCc
Confidence 44211112233344455554 3345688899999998766544 222334445554 466
Q ss_pred EEEEec-CCe-------EEEEEccCCCceEEEeeccCC-------cceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCE
Q 003331 615 LYVAST-SGR-------LTAISVKALPFHTLWLHELEV-------PAFASLCITSANRHVICCLVD-GHVVALD-SSGSI 677 (829)
Q Consensus 615 l~v~t~-~g~-------l~~~~~~~~~g~~~w~~~~~~-------~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~ 677 (829)
++++.. .|. +..++. |+.+-...... ....++++..+++.+.+.+.. +.+..|| .+|++
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 666542 221 222221 12111111111 123566777677777777654 5566787 88887
Q ss_pred EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 678 IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 678 ~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+-.......- . +....++ ..+.+..|.+..++..+.+.
T Consensus 252 ~~~~~l~D~c-G---va~~~~~-f~~ssG~G~~~~~~~~~~~~ 289 (305)
T PF07433_consen 252 LGSVPLPDAC-G---VAPTDDG-FLVSSGQGQLIRLSPDGPQP 289 (305)
T ss_pred eeccccCcee-e---eeecCCc-eEEeCCCccEEEccCccccc
Confidence 7544332110 0 1111222 55555566666666544433
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.46 Score=48.67 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCcEEEEECCCCcEEEEEEcCCce---------------------------eeceEEeeCCcEEEEEEeCCEEEEEEcCC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRI---------------------------ECSAAVLADFSQVVVGCYKGKIYFLDYLT 547 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~---------------------------~~~~~~~~~~~~v~vg~~dg~l~~~d~~t 547 (829)
++.++.+|+.||+++|+....+.+ ..++....+|++|+..-.-..|+++|.+|
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCC
Confidence 456889999999999875432110 12333344556666665567899999999
Q ss_pred CcEEEEEec
Q 003331 548 GDIYWTFQT 556 (829)
Q Consensus 548 G~~~w~~~~ 556 (829)
|+++|+...
T Consensus 175 G~I~W~lgG 183 (299)
T PF14269_consen 175 GKIIWRLGG 183 (299)
T ss_pred CcEEEEeCC
Confidence 999998743
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.53 Score=53.91 Aligned_cols=181 Identities=11% Similarity=0.026 Sum_probs=108.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce--eeceEEeeCCc--EEEEEEeCCEEEEEEcCC-CcEEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI--ECSAAVLADFS--QVVVGCYKGKIYFLDYLT-GDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~--~~~~~~~~~~~--~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~ 559 (829)
.+..+++++.++.+..+|.+.+....+...+.+. .++..+..... +++.|+--+.|+.|++.- .+.. ....+..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG 176 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEG 176 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCC
Confidence 5678888888888999998877766554444432 22333333334 455666778899998751 1222 2333334
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee--ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL--PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+.+..++.++.+.|.|..++.|++++++..-.. .....++. .++.+ ..++.++.|-++.+|+.+ |+.+
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~-~~~~~--n~i~t~gedctcrvW~~~---~~~l 250 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA-CCFLP--NRIITVGEDCTCRVWGVN---GTQL 250 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE-EEecc--ceeEEeccceEEEEEecc---ccee
Confidence 4445566667888999999999999999998765411 11122333 34444 488888888888888655 4433
Q ss_pred EeeccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 638 WLHELE-VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 638 w~~~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
-.+..+ ...........+.-.++.+..||++..++
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 333221 12222333333444556666778777776
|
|
| >PRK07639 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.023 Score=45.58 Aligned_cols=67 Identities=12% Similarity=0.041 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHhcccCc---ceeccCCCccc-cCCChHHHHHHHHHc----C--Ccchhh--hcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMV---EEVLHHDNFFT-MGGNSIAAAHVAHNL----G--IDMRLI--YNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~---~~i~~~~~Ff~-lGgdSl~a~~l~~~l----~--~~~~~~--~~~pt~~~la~~l~~~~ 354 (829)
.++...++++.++.++. +++.++.+|++ +|.||+.+++|...| + ++-..+ -...|+..++.++.++.
T Consensus 4 ~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T PRK07639 4 EALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQ 82 (86)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhh
Confidence 45677888888888776 35788899976 999999999998765 3 554544 47889999999998765
|
|
| >PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.018 Score=45.11 Aligned_cols=63 Identities=13% Similarity=0.184 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcccCcc--eeccCCCccccCC-ChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHh
Q 003331 290 LLQVIRKAFGHALMVE--EVLHHDNFFTMGG-NSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLE 352 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~--~i~~~~~Ff~lGg-dSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~ 352 (829)
+++.++++..+..+.+ .+..++++|+.|+ |||.+++|...| .++...+-. +.|+..++.++.+
T Consensus 3 i~~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~ 76 (78)
T PRK05087 3 FKEQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEE 76 (78)
T ss_pred HHHHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHH
Confidence 5667777777776554 4568899999996 999999998765 355555555 8899999998875
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.46 Score=45.54 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCcEEE-EEec-CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCc--
Q 003331 697 LPSQVLICSRNGSIYSFEQESGNLLW-EYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV-- 772 (829)
Q Consensus 697 ~~~~i~~~t~~g~l~~~d~~tG~~~w-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~-- 772 (829)
....+.+|+.+|.+-.||.++....- .+.. ...+...-+.. .....+++++.||.|+.||.++..
T Consensus 191 qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp-----------k~p~~Lft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 191 QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP-----------KNPEHLFTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred cccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC-----------CCchheeEecCCCcEEEEcCCCceEE
Confidence 45678899999999999988763210 0111 11111111111 126789999999999999988422
Q ss_pred -----ccccccccccccee-eeeec-cCCc--ccccceEECCEEEEeeeCCeEEEEe
Q 003331 773 -----TGKENQSKDHMVQE-FAKLE-LQGD--IFSSPVMIGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 773 -----~~~~~~~~~~~~~~-~~~~~-~~~~--~~~s~~~~~~~l~vg~~~g~l~~~d 820 (829)
....-|...+..+. +.... ++.. -+++.-+.+..|.-|+.-+-+|.++
T Consensus 260 i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 260 ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 12222332222221 21111 1221 2334555678899998888888775
|
|
| >COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.017 Score=45.81 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+..++++..+.|+.+ .+..++.|. ++|.|||.+++|...| .++...+...+|+..++.++.+.
T Consensus 5 ~~~~~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~ 78 (80)
T COG0236 5 AIEERVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEEL 78 (80)
T ss_pred HHHHHHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHh
Confidence 46777888888888774 466778887 5999999999998765 47888899999999999998764
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.36 Score=47.09 Aligned_cols=107 Identities=9% Similarity=0.188 Sum_probs=63.6
Q ss_pred eeeecCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCC-CCcEEEEE
Q 003331 651 CITSANRHVICCLVDGHVVALD-SSGSI----IWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQE-SGNLLWEY 724 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~-tG~~~w~~ 724 (829)
.+...+..++++..+|.+...+ ....+ .|+.. ..+.....+. ....+.+|.|+.|+.+.+||.+ .++++|.-
T Consensus 128 D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~H-e~E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 128 DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVH-EFEAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EeeccCceEEEEcCCCcEEEEecceeeeeeccccccc-ceeeeeeecc-cCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 3444556677777777777555 32222 13211 1112222211 1124679999999999999988 56788862
Q ss_pred -e-cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 725 -S-VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 725 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+ ...++.+..... .....|++|+.|-.|..||.++
T Consensus 206 ~kvH~~GV~SI~ss~-----------~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSP-----------PKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ceeeecceEEEecCC-----------CCCceEEEeccccceeeeehhc
Confidence 2 233333222111 2367899999999999999873
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.59 Score=51.33 Aligned_cols=110 Identities=15% Similarity=0.249 Sum_probs=71.2
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEEeec
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVYKLP 597 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~ 597 (829)
.++...++++.+|+.-|.||.|+..+|+.+.... ....+.+...+.+.+.++.+|+..|.|..+-...+. ......
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 3455556789999999999999977776654322 123344445556566777778877776665444322 222222
Q ss_pred c---CCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 598 C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 598 ~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
. ++........+.++..+|.|...|.|.+..++.
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2 233455566777788999999999988877664
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.15 Score=52.07 Aligned_cols=157 Identities=14% Similarity=0.119 Sum_probs=91.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEE-cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec-c
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLD-YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP-C 598 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d-~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~-~ 598 (829)
..++..+|..+.+|..||.+..|+ +..-.++-...++.++..- .+.+++..|..-+.+ ....|+..+|..+-... .
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL-~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDL-DFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccc-eeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 456667778899999999999999 4444444444555665543 455555555544445 78999999995433222 2
Q ss_pred CC-cccccceeec--CCCEEEEEec---CCeEEEEEccCCCce--EEEeecc-CCcceeeeeeeecCCEEEEEeeCCeEE
Q 003331 599 GG-SIFGSPAIDE--VHDVLYVAST---SGRLTAISVKALPFH--TLWLHEL-EVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 599 ~~-~~~~~~~~~~--~~~~l~v~t~---~g~l~~~~~~~~~g~--~~w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
+. ..+..+-+.. ....+++++. .+.+..++.....+. ..|.... ..+..++..++.+++.+.+|+.+|.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22 2333333322 1235665543 234554443321110 0111111 123457888888999999999999999
Q ss_pred EEc-CCCCEEE
Q 003331 670 ALD-SSGSIIW 679 (829)
Q Consensus 670 ~~d-~~g~~~w 679 (829)
+++ .+-+.+.
T Consensus 307 i~~~~~lq~~~ 317 (398)
T KOG0771|consen 307 IYDAKSLQRLQ 317 (398)
T ss_pred EEEeceeeeeE
Confidence 998 5544443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.60 E-value=3 Score=42.17 Aligned_cols=134 Identities=10% Similarity=0.081 Sum_probs=75.4
Q ss_pred EEEEeccCC-eEEEEEcCCCeEEEeeccC--CcccccceeecCCCEEEEEe-----cCCeEEEEEccCCCceEEEeeccC
Q 003331 572 LIWCGSHDH-NLYALDFRNYRCVYKLPCG--GSIFGSPAIDEVHDVLYVAS-----TSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 572 ~i~~gs~~g-~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~l~v~t-----~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.+.++-.-| .++.||..+|+....+... -..+..-+++.++..+|+.- ..|.|-+||... +...+-.+...
T Consensus 19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~ 97 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSH 97 (305)
T ss_pred EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-CcEEEeEecCC
Confidence 344443322 4778898888877555443 23455667777677777643 247788898872 14444444332
Q ss_pred CcceeeeeeeecCCEEEEEe------------------eCCeEEEEc-CCCCEEEEeec--CCceeecCcccccCCCeEE
Q 003331 644 VPAFASLCITSANRHVICCL------------------VDGHVVALD-SSGSIIWRCRT--GGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~------------------~~g~i~~~d-~~g~~~w~~~~--~~~~~~~~~~~~~~~~~i~ 702 (829)
.-......+.+++..++++. .+..+..+| .+|+++-+... .-...|.--+....+|.++
T Consensus 98 GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~ 177 (305)
T PF07433_consen 98 GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVA 177 (305)
T ss_pred CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEE
Confidence 21112233444555666653 344577888 88988755443 2222333323345578888
Q ss_pred EEee
Q 003331 703 ICSR 706 (829)
Q Consensus 703 ~~t~ 706 (829)
++..
T Consensus 178 ~a~Q 181 (305)
T PF07433_consen 178 FAMQ 181 (305)
T ss_pred EEEe
Confidence 8864
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.1 Score=55.83 Aligned_cols=146 Identities=18% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~ 563 (829)
.++.++.+++ |.++.+|..|++.+.+...+...+.++..+.||..+.+.|.|..|..||+.. ++.+...+.++.++.+
T Consensus 140 aDgil~s~a~-g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 140 ADGILASGAH-GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred cCceEEeccC-ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhh
Confidence 5777888776 5699999999999988777777777889999999999999999999999864 6666666666555433
Q ss_pred eee-ecCCCEEEEeccC----CeEEEEEcCC-CeEEEeeccCCc-ccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003331 564 PVV-DAPRQLIWCGSHD----HNLYALDFRN-YRCVYKLPCGGS-IFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 564 ~~~-~~~~~~i~~gs~~----g~l~~~d~~t-g~~~w~~~~~~~-~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
-++ ...-..|+..+.+ ..+.+||... |..+.+...... -.-.|.++.+.+.++.+. .+..++++...+
T Consensus 219 Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 219 RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred eeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecC
Confidence 222 1111122221111 2466666432 233333332221 123456677666666544 356788877443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.2 Score=45.01 Aligned_cols=156 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred ccccccceEEeeCCCeEEEEecCCCcEEEEECC------CCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 472 SCVDASPLVVLKDSDIYLFVGSHSHKFICADAK------RSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 472 ~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~------tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+||.|- -++..+..|..|..|-.+..|+.. +-|++-....+. ..+.+..+......+|.|..++.|...|
T Consensus 57 GCiNAl---qFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 57 GCINAL---QFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccee---eeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 466532 233456677778887777888764 233333222222 2234556666667899999999999999
Q ss_pred cCCCcEEEEEecCC---eeeeeeeeecCCCEEEEeccCCeEEEEEcCCC----eEEEeeccCCcccccceeecCCCEEEE
Q 003331 545 YLTGDIYWTFQTCG---EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY----RCVYKLPCGGSIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 545 ~~tG~~~w~~~~~~---~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg----~~~w~~~~~~~~~~~~~~~~~~~~l~v 617 (829)
.++.+.+..+.... .++. .-..+.++++.+.+.++.+..||.... .+......+....+...-......|.+
T Consensus 134 iEt~qsi~V~~~~~~~~~VY~-m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQSIYVANENNNRGDVYH-MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccceeeeeecccCcccceee-cccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 99998887665433 3332 223344677888888999999997653 233222222222222221112245666
Q ss_pred EecCCeEEEEEccC
Q 003331 618 ASTSGRLTAISVKA 631 (829)
Q Consensus 618 ~t~~g~l~~~~~~~ 631 (829)
.+..+++-.||...
T Consensus 213 ~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 213 NSETGGPNVFDRRM 226 (609)
T ss_pred ccccCCCCceeecc
Confidence 67677777787653
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.49 E-value=3.9 Score=42.82 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=108.5
Q ss_pred EEEEEEcCCCcEEEEEecCC--eeeeeeee--ec----CCCEEEEecc---------C-CeEEEEEcCCC-----e--EE
Q 003331 539 KIYFLDYLTGDIYWTFQTCG--EVKCQPVV--DA----PRQLIWCGSH---------D-HNLYALDFRNY-----R--CV 593 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~--~~~~~~~~--~~----~~~~i~~gs~---------~-g~l~~~d~~tg-----~--~~ 593 (829)
.|..+|..+.+.+-++.... .+.+...+ .. ....+.+|+. . |.++.|+..+. + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46777777777776655432 22221111 11 1455666642 2 88999998874 2 22
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD- 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d- 672 (829)
......+.+.+-..+ ++.++++. ++.++.++..... +..-......+. ....+...++.+++|....++..+.
T Consensus 83 ~~~~~~g~V~ai~~~---~~~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~~~-~i~sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF---NGRLVVAV-GNKLYVYDLDNSK-TLLKKAFYDSPF-YITSLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE---TTEEEEEE-TTEEEEEEEETTS-SEEEEEEE-BSS-SEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh---CCEEEEee-cCEEEEEEccCcc-cchhhheecceE-EEEEEeccccEEEEEEcccCEEEEEE
Confidence 334444554443333 36766655 5779999988732 122222222222 2333444577999999888887764
Q ss_pred -CCCC-EEEEeecCCc--eeecCcccccCCCeEEEEeeCCeEEEEeCCC-------C--cEE--EEEecCCccccccccc
Q 003331 673 -SSGS-IIWRCRTGGP--IFAGPCTSFALPSQVLICSRNGSIYSFEQES-------G--NLL--WEYSVGDPITASAYID 737 (829)
Q Consensus 673 -~~g~-~~w~~~~~~~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t-------G--~~~--w~~~~~~~~~~~~~~~ 737 (829)
..+. +........+ +.+..++. + ++.+.++..+|.++.+.... + ++. -.+..+..+....-..
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~-d-~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLV-D-EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE--S-SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccCCEEEEEEecCCCccEEEEEEec-C-CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 3333 3322222222 22222221 2 24788888889887776431 2 233 3444554443320000
Q ss_pred cccccc-cccccCCCcEEEEEccCCcEEEEEe
Q 003331 738 EHLQLK-LESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 738 ~~~~~~-~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+... ..+.......++.++.+|+|..+-+
T Consensus 235 --l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 235 --LIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred --eeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 0000 0000001345888889999996654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.84 Score=43.60 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=85.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEE--EEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVV--GCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~v--g~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
..+.-|.|.. .|+.++..+... -...+.. ........++++..+.+ |..++.+..||.+ ++.+..+.. ...
T Consensus 30 ~~~ks~~~~~--~l~~~~~~~~~~-~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~--~~~ 103 (194)
T PF08662_consen 30 KSGKSYYGEF--ELFYLNEKNIPV-ESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGT--QPR 103 (194)
T ss_pred cCcceEEeeE--EEEEEecCCCcc-ceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecC--CCc
Confidence 3444555442 477777654432 2333322 22456778888877544 4456789999975 777766643 222
Q ss_pred eeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 562 CQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
....+++.+..+.+++. .|.+..||..+.+.+-+..... ......++++..+..++... ....++ |-.+|
T Consensus 104 n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~t~~~WsPdGr~~~ta~t~~---r~~~dn--g~~Iw 176 (194)
T PF08662_consen 104 NTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--ATDVEWSPDGRYLATATTSP---RLRVDN--GFKIW 176 (194)
T ss_pred eEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--EEEEEEcCCCCEEEEEEecc---ceeccc--cEEEE
Confidence 34456777788887654 3679999999888876665432 34556777677777665431 223333 55555
Q ss_pred ee
Q 003331 639 LH 640 (829)
Q Consensus 639 ~~ 640 (829)
.+
T Consensus 177 ~~ 178 (194)
T PF08662_consen 177 SF 178 (194)
T ss_pred Ee
Confidence 54
|
|
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.2 Score=56.25 Aligned_cols=43 Identities=19% Similarity=0.446 Sum_probs=38.4
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003331 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
|+.||.+++.. --.|.|+||.+.++.+.|+++.-.+++.++..
T Consensus 410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence 89999999842 34699999999999999999999999998876
|
|
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.093 Score=55.28 Aligned_cols=114 Identities=18% Similarity=0.323 Sum_probs=63.6
Q ss_pred CccEEEEec------CCCC-HhHHHHHHHhCCC---ceEEeecCccccccccccccccCCCcccccCCCCccccccccCC
Q 003331 19 SLKLLVLSG------EVLP-LSMWDIISKLFPN---ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 88 (829)
Q Consensus 19 ~lr~i~~gG------e~l~-~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 88 (829)
..+++-.|| |.++ .++.+.+.+.|.- ..+++.||+||..... +.+... -.+.|.
T Consensus 222 ~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~--~~~~~~--------------~~~~p~ 285 (365)
T PF04443_consen 222 GSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQA--YECGHG--------------HFHVPP 285 (365)
T ss_pred CCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhh--eeCCCC--------------cccCCC
Confidence 455555554 4575 4566667776722 4799999999965322 222110 012223
Q ss_pred cEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC----
Q 003331 89 CDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS---- 160 (829)
Q Consensus 89 ~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~---- 160 (829)
. +.+.|++. +.|..|-|.+-.+... . ..+..-|.|+|.+..+
T Consensus 286 w-V~iRDp~tl~~~~~Ge~Gli~vidl~~~-s----------------------------~p~~IlTeDlGvl~~~~~c~ 335 (365)
T PF04443_consen 286 W-VIIRDPETLEPLPPGETGLIQVIDLANT-S----------------------------YPGFILTEDLGVLHGDDDCG 335 (365)
T ss_pred e-EEEECCCCCcCCCCCCeeEEEEEccccc-C----------------------------CCcEEEEcceeeecCCCCCC
Confidence 3 66677765 2344455555332110 0 1233679999987543
Q ss_pred ----CcEEEEeecCCcEEECCee
Q 003331 161 ----GDLVFLGRKDRTIKINGQR 179 (829)
Q Consensus 161 ----G~l~~~GR~dd~ik~~G~~ 179 (829)
.++.++||.+.- .++|-.
T Consensus 336 cr~g~~f~vlGR~~~a-e~RGCs 357 (365)
T PF04443_consen 336 CRKGKYFEVLGRADGA-EIRGCS 357 (365)
T ss_pred CccCCEEEEEeCCCCC-ccCCcH
Confidence 279999998742 344443
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.42 E-value=3.7 Score=41.99 Aligned_cols=260 Identities=13% Similarity=0.149 Sum_probs=107.9
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---CCe--e-eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---CGE--V-KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---~~~--~-~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
.+.+.++ +.-|+....+.| +...+|-.-|+... ... . .....+.+ +..|+.+..+.|+. ..+|-.-|
T Consensus 21 dV~F~d~-~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG~~g~ll~--T~DgG~tW 93 (302)
T PF14870_consen 21 DVAFVDP-NHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVGEPGLLLH--TTDGGKTW 93 (302)
T ss_dssp EEEESSS-S-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEEETTEEEE--ESSTTSS-
T ss_pred EEEEecC-CEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEcCCceEEE--ecCCCCCc
Confidence 3445433 444444445644 33456666676432 111 1 11222232 34555544553322 23344455
Q ss_pred eec-c----CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcc--eeeeeeeecCCEEEEEeeCCe
Q 003331 595 KLP-C----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPA--FASLCITSANRHVICCLVDGH 667 (829)
Q Consensus 595 ~~~-~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~l~~~~~~g~ 667 (829)
..- . .+..+....+. ++.+++.+..|.||. ..+ |-.-|+....... +...... .++.+++.+..|.
T Consensus 94 ~~v~l~~~lpgs~~~i~~l~--~~~~~l~~~~G~iy~--T~D--gG~tW~~~~~~~~gs~~~~~r~-~dG~~vavs~~G~ 166 (302)
T PF14870_consen 94 ERVPLSSKLPGSPFGITALG--DGSAELAGDRGAIYR--TTD--GGKTWQAVVSETSGSINDITRS-SDGRYVAVSSRGN 166 (302)
T ss_dssp EE----TT-SS-EEEEEEEE--TTEEEEEETT--EEE--ESS--TTSSEEEEE-S----EEEEEE--TTS-EEEEETTSS
T ss_pred EEeecCCCCCCCeeEEEEcC--CCcEEEEcCCCcEEE--eCC--CCCCeeEcccCCcceeEeEEEC-CCCcEEEEECccc
Confidence 432 1 22222222233 356777777776654 223 5556776443221 2222233 4445554555677
Q ss_pred EEEEcCCCCEEEEee---cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccc
Q 003331 668 VVALDSSGSIIWRCR---TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLK 743 (829)
Q Consensus 668 i~~~d~~g~~~w~~~---~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~ 743 (829)
++.--..|...|+.. ....+.+.. ...++.+|+.+..|.|+.-+.......|....... ....-+.+ +.
T Consensus 167 ~~~s~~~G~~~w~~~~r~~~~riq~~g---f~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld----~a 239 (302)
T PF14870_consen 167 FYSSWDPGQTTWQPHNRNSSRRIQSMG---FSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILD----LA 239 (302)
T ss_dssp EEEEE-TT-SS-EEEE--SSS-EEEEE---E-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEE----EE
T ss_pred EEEEecCCCccceEEccCccceehhce---ecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEE----EE
Confidence 765434455455432 222333322 34578999999888777776344445676532111 00000010 00
Q ss_pred cccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc----CCcccccceEECCEEEEeeeCCeEEEE
Q 003331 744 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL----QGDIFSSPVMIGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~~~~~l~vg~~~g~l~~~ 819 (829)
...++.+|++..+|.|++= .+.| +.|.+... +++....-...+++-|+-..+|.|..|
T Consensus 240 ----~~~~~~~wa~gg~G~l~~S-~DgG-------------ktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 240 ----YRPPNEIWAVGGSGTLLVS-TDGG-------------KTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp ----ESSSS-EEEEESTT-EEEE-SSTT-------------SS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ----ecCCCCEEEEeCCccEEEe-CCCC-------------ccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 1126788888888877643 2222 33433322 332222222346788888889988776
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.27 Score=56.45 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=84.5
Q ss_pred CCCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCce-eeceEEee-----CCcEEEEEEeCCEEEEEEcCC-C-cEEEE
Q 003331 484 DSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRI-ECSAAVLA-----DFSQVVVGCYKGKIYFLDYLT-G-DIYWT 553 (829)
Q Consensus 484 d~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~-~~~~~~~~-----~~~~v~vg~~dg~l~~~d~~t-G-~~~w~ 553 (829)
+.+..+++-+ +...||.+|+.+|+++-+++.+..+ ....+... .....++|-.++.|++||+.- | +++|.
T Consensus 490 ~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 490 DQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 3444444443 4578999999999997555554432 11222111 124688999899999999874 3 45553
Q ss_pred ----EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 554 ----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 554 ----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
|...... +.+....+|.|.+|+.+|.|+.||. .|+. .-.+..-+..+..+.+.. +|..+++|.+..|..++
T Consensus 570 ~~k~Y~~~~~F--s~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 570 QSKQYSSKNNF--SCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATCKTYLLLID 645 (794)
T ss_pred cccccccCCCc--eEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEeecceEEEEE
Confidence 2222222 2334456799999999999999994 4432 111221133333444444 35555566667787777
Q ss_pred cc
Q 003331 629 VK 630 (829)
Q Consensus 629 ~~ 630 (829)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 53
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=2 Score=42.45 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeee------ecCCCEEEEeccCCeEEEEEc-
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV------DAPRQLIWCGSHDHNLYALDF- 587 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~------~~~~~~i~~gs~~g~l~~~d~- 587 (829)
+........+...|.++..++.|+++..||.++..-.|.....-......++ ..-+..|.+.++|+++..|..
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~ 91 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQ 91 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeec
Q ss_pred ----CCCeEEEeeccC--------CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-------cee
Q 003331 588 ----RNYRCVYKLPCG--------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-------AFA 648 (829)
Q Consensus 588 ----~tg~~~w~~~~~--------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-------~~~ 648 (829)
+.....|...+. -.+-..|...+ =.+...+.+|.|.+|+.-+----..|.....-. .+.
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlG--LklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLG--LKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcc--eEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Q ss_pred eeeeeec-------CCEEEEEeeC-----CeEEEEc-CCCCEEEEeecCCceeecCc-------ccccCCCeEEEEeeCC
Q 003331 649 SLCITSA-------NRHVICCLVD-----GHVVALD-SSGSIIWRCRTGGPIFAGPC-------TSFALPSQVLICSRNG 708 (829)
Q Consensus 649 s~~~~~~-------~~~l~~~~~~-----g~i~~~d-~~g~~~w~~~~~~~~~~~~~-------~~~~~~~~i~~~t~~g 708 (829)
.++.+.. ...+.+|+.+ +.++.|. ..+...|..-..-+-...|+ .....-..|-+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Q ss_pred eEEEEeCCCCc------------------------------EEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 709 SIYSFEQESGN------------------------------LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 709 ~l~~~d~~tG~------------------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
|+.|+.+.-. .+|.....-. +..+...+
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt---------------------GtiLsStG 307 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT---------------------GTILSSTG 307 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee---------------------eeEEeecC
Q ss_pred cCCcEEEEEee
Q 003331 759 SSGSIHILRVN 769 (829)
Q Consensus 759 ~~G~l~~~d~~ 769 (829)
.||.|..|...
T Consensus 308 dDG~VRLWkan 318 (361)
T KOG2445|consen 308 DDGCVRLWKAN 318 (361)
T ss_pred CCceeeehhhh
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.078 Score=59.41 Aligned_cols=188 Identities=15% Similarity=0.239 Sum_probs=106.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEE--EEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW--TFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w--~~~~~~~~~~ 562 (829)
+...+++.+-| .+.+.+..+|.+.|...-.- +..++.-... -...-+-.+|.+|.+-- +.-+. .+.....+..
T Consensus 26 ~e~~~~~stid-~l~a~s~~~g~~~~~l~~~p-vv~~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~ 100 (903)
T KOG1027|consen 26 DENLLLVSTID-SLHAPSSETGFIKWTLSDDP-VVASPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNA 100 (903)
T ss_pred ccccccccccc-cccCccccccceeeeeccCc-cccCCccccc-cccCCCccccceeeccC--CCccccCCccchhhhcc
Confidence 34567777777 78888889999999754321 1111111000 00112233566665532 22222 2333334444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+|+.. .+|.+|.|+..+..|.+|++||+..|++....++ ...+|.+-.+.++..+|.++ -...|....
T Consensus 101 ~pcrs-sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~--~~~~wn~t~ 168 (903)
T KOG1027|consen 101 SPCRS-SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNV--RGKTWNTTF 168 (903)
T ss_pred CcccC-CCCeEEecccccceEEecCCccceeEEEecCCcc---------hhheecccceeEEecccCcc--cCceeeccc
Confidence 55544 5799999999999999999999999999776522 24566665566666666554 344565544
Q ss_pred CCcceeeeeeeecCCEE-EEEeeCCeEEEEc-CCCCEEEEeecCCceee
Q 003331 643 EVPAFASLCITSANRHV-ICCLVDGHVVALD-SSGSIIWRCRTGGPIFA 689 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l-~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~ 689 (829)
.......+.......+. +..+.+|.+.-+| ..|+.+|......+++.
T Consensus 169 ~dy~a~~~~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv~ 217 (903)
T KOG1027|consen 169 GDYSAQYPSGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVVA 217 (903)
T ss_pred cchhccCCCccCCceeEEEeecCCccEEeccCcccceeeccccCCceEE
Confidence 32221111111111121 2222367777788 89999998776655443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.33 Score=49.46 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=89.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc---EEEE-EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---CcEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSS---VLWE-IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT---GDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~---~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t---G~~~w~~ 554 (829)
.++++..|++++.+...+.++..... ..|. +..+.+. .+..+..+...+.++..-|.+|.+|..+ |..+-..
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l 148 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL 148 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence 45667788888877765445433222 2232 2222222 2333444445666666566666666433 3332211
Q ss_pred ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc-CCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
.+-.+....++.+++..|.++..|..|++.....-..+-.+-. +....+.+.+.+ +..|+.++.|++|+.||..+
T Consensus 149 -GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd~~s-- 224 (390)
T KOG3914|consen 149 -GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWDITS-- 224 (390)
T ss_pred -hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEeccc--
Confidence 1223444556667778888888888887765443333333333 233455566654 45678899999999999998
Q ss_pred ceEEEeec
Q 003331 634 FHTLWLHE 641 (829)
Q Consensus 634 g~~~w~~~ 641 (829)
|+.+....
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 88775544
|
|
| >PTZ00171 acyl carrier protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.035 Score=49.49 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+.+.+++++.+++ +.+.++.+|. ++|.|||..++|...| .++..++-...|+..++.++.++.
T Consensus 68 ~~~v~~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~ 144 (148)
T PTZ00171 68 KEDVLTRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNN 144 (148)
T ss_pred HHHHHHHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHH
Confidence 456788888999888876 4688899986 9999999999998765 367778899999999999998754
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.23 E-value=5.6 Score=43.10 Aligned_cols=198 Identities=12% Similarity=0.144 Sum_probs=101.2
Q ss_pred cccceEEeeCCCeEEEEecCCC-cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003331 475 DASPLVVLKDSDIYLFVGSHSH-KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 475 ~~sp~v~~~d~~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
.+.|+.+..+....+-.++... .|..|+. +|+++++............+..+. .+++-..||.++.+|.. |+. +
T Consensus 39 ~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~--~ 113 (410)
T PF04841_consen 39 YGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEF--Q 113 (410)
T ss_pred CCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cce--e
Confidence 3345555555444444444433 4888885 599998876665444466776654 45555679999999965 666 5
Q ss_pred EecCCeeeeeee--------eecCCCEEEEeccCCeEEEEEcCCCeEEEeec--cCCc---------ccccceeecCCCE
Q 003331 554 FQTCGEVKCQPV--------VDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP--CGGS---------IFGSPAIDEVHDV 614 (829)
Q Consensus 554 ~~~~~~~~~~~~--------~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~--~~~~---------~~~~~~~~~~~~~ 614 (829)
+..+..+....+ .....|.+. -+.++.++.++--+....++.. .... ....+.++.+...
T Consensus 114 fsl~~~i~~~~v~e~~i~~~~~~~~Givv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~ 192 (410)
T PF04841_consen 114 FSLGEEIEEEKVLECRIFAIWFYKNGIVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVV 192 (410)
T ss_pred echhhhccccCcccccccccccCCCCEEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcce
Confidence 544433321111 111245443 3456677777544333232211 1110 0001122322233
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+....++.++.++... .+. ... ...+..++++++++.+.+-+.+|.+.+++ .-.+..-++.++
T Consensus 193 ~i~~~~g~~i~~i~~~~--~~~---i~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 193 EILLANGETIYIIDENS--FKQ---IDS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EEEEecCCEEEEEEccc--ccc---ccC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 33333445555555332 111 111 12345667777888888888888887777 333444444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.1 Score=50.28 Aligned_cols=196 Identities=16% Similarity=0.169 Sum_probs=103.5
Q ss_pred CcEEEEEecCCeeee-eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEEecCCeE
Q 003331 548 GDIYWTFQTCGEVKC-QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 548 G~~~w~~~~~~~~~~-~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~t~~g~l 624 (829)
|+.-|+...-+..+. ...+.....++++.+..|.+..++.+||++.|+.-....... .+. ..++......+
T Consensus 24 gkfdwr~~~vG~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~------~~~iS~dg~~l 97 (910)
T KOG2103|consen 24 GKFDWRQQLVGVKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPL------TNTISVDGRYL 97 (910)
T ss_pred hhcchhhhcccceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcce------eEEEccCCcEE
Confidence 566666554443222 223444677899999999999999999999999866543221 111 11344444568
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCCCeEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVL 702 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~ 702 (829)
+.||.++ |...|....... +....+....+..++. | .. ..|++.|.-.......-.. .......+.+|
T Consensus 98 r~wn~~~--g~l~~~i~l~~g-~~~~~~~v~~~i~v~~---g----~~~~~g~l~w~~~~~~~~~~~~q~~~~~~t~vvy 167 (910)
T KOG2103|consen 98 RSWNTNN--GILDWEIELADG-FKGLLLEVNKGIAVLN---G----HTRKFGELKWVESFSISIEEDLQDAKIYGTDVVY 167 (910)
T ss_pred EeecCCC--ceeeeecccccc-cceeEEEEccceEEEc---c----eeccccceeehhhccccchhHHHHhhhccCcEEE
Confidence 8999888 999999877654 3222222222222221 1 33 5788888755432211000 00011123344
Q ss_pred EE----eeCCeEEEEeCCCCcEE-EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 703 IC----SRNGSIYSFEQESGNLL-WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~----t~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.- .....|+.++.++|... |+.....+-..... |....+.+++ +.+|++..+|....
T Consensus 168 ~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~-----------c~~~k~~vl~-~s~g~l~s~di~~~ 229 (910)
T KOG2103|consen 168 VLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLS-----------CSTDKEVVLV-CSNGTLISLDISSQ 229 (910)
T ss_pred EEEEEecCCceEEEEEccCCcEecceeeeecCcccccc-----------cccccceEEE-cCCCCeEEEEEEee
Confidence 32 12345777777777765 54433222211110 1112344444 45667777776643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.59 Score=52.80 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++..|..+..+..+|..+++..........- ..++-.++..+++|...|+|..-|+++-+.+.++..+....+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD- 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD- 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceee-
Confidence 3456777888888999999999887766665432 2233345578999999999999999999999999887665443
Q ss_pred eeecCCCEEEEeccCCe---------EEEEEcCCCeEEEeeccCC-c--ccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 565 VVDAPRQLIWCGSHDHN---------LYALDFRNYRCVYKLPCGG-S--IFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~---------l~~~d~~tg~~~w~~~~~~-~--~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
++-.++.+.+.+.... |..||...-+.+--+.... + ..-.|.+ -.++.|.+..|.....|..+.
T Consensus 223 -fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl---~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 -FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSL---TTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred -eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccc---cceEEEEecccceeecccccc
Confidence 3334566666554433 3444544433222111111 0 1112222 256778888888888774321
Q ss_pred Cc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 633 PF--HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 633 ~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
+. .-........+...+..+++.++.+.+|..+|.|..|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 00 11122223333346677888889999999999999887
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.13 Score=49.14 Aligned_cols=141 Identities=13% Similarity=0.144 Sum_probs=79.9
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCe------eeeeeee----ecCCCEEEEeccCCeEEEE--EcCCCeEEEee-
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------VKCQPVV----DAPRQLIWCGSHDHNLYAL--DFRNYRCVYKL- 596 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------~~~~~~~----~~~~~~i~~gs~~g~l~~~--d~~tg~~~w~~- 596 (829)
.+.+|-.+|.+..||..+|..+-.+..... ....|+. +.....=..|+.+..+..| +-.+|.+.-..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 356777789999999999855433221111 1111111 1111111223333344444 44445443221
Q ss_pred -ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 597 -PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 597 -~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.....-.+...+-.+++.+..+.+||.+.+|+-++ +.++-..+.+.....+.++.++-+.+..++.|+.|..|+
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 12222334445555567778889999999999887 777665555555556667777767778888888776653
|
|
| >PRK08172 putative acyl carrier protein IacP; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.043 Score=43.58 Aligned_cols=66 Identities=9% Similarity=0.141 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
++..++++++++.+++ +.+.++.+| -++|.|||..+.|...| .++...+.+..|+..+..++.++.
T Consensus 4 ~i~~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~ 78 (82)
T PRK08172 4 DIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSL 78 (82)
T ss_pred cHHHHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHH
Confidence 4667888888888877 568899999 57999999999998765 477788999999999999998754
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.33 Score=49.44 Aligned_cols=156 Identities=12% Similarity=0.127 Sum_probs=82.5
Q ss_pred ecCCCEEEEeccCCeEEEEEc--CCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc-
Q 003331 567 DAPRQLIWCGSHDHNLYALDF--RNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL- 642 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~--~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~- 642 (829)
.++...+++++.+...+.++. ... ...|...+.........+..++..+.++-..|.+|.++..... . |....
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~--~-~~~~~~ 147 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD--S-GRCEPI 147 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc--c-cCcchh
Confidence 344555666655555433332 221 2223222222222233333334666666666777777655311 0 22111
Q ss_pred --CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 643 --EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 --~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+........+++++..|..+..|+.|.+.. ..-..+-.+-.+.. ..+.++ ...+..++.++.|++|+.||..+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is--l~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS--LTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee--eccCceeeecCCCCcEEEEecccC
Confidence 112234556777788888888888777665 32222222222222 222222 223556899999999999999999
Q ss_pred cEEEEEecC
Q 003331 719 NLLWEYSVG 727 (829)
Q Consensus 719 ~~~w~~~~~ 727 (829)
+.+..++..
T Consensus 226 k~L~t~dl~ 234 (390)
T KOG3914|consen 226 KLLDTCDLS 234 (390)
T ss_pred Ccccccchh
Confidence 988665543
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=7.8 Score=43.32 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=123.4
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCC----------------ce----eeceEEeeCCcEEEEE-EeCCEEEE
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEG----------------RI----ECSAAVLADFSQVVVG-CYKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~----------------~~----~~~~~~~~~~~~v~vg-~~dg~l~~ 542 (829)
++.++|+-.. +.++..+++++=+..--...+. .+ +..+-+.++|..++.. .+.+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 4567888774 5677777776533222122111 00 1112233455555433 34567889
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 543 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
+|.++-++.|+...++... ...+..+++.+|+.+++ ..+..++..+...+..+..... .....+++..+++
T Consensus 220 ID~etmeV~~qV~Vdgnpd-~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~i----ea~vkdGK~~~V~ 294 (635)
T PRK02888 220 VDAETMEVAWQVMVDGNLD-NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARI----EEAVKAGKFKTIG 294 (635)
T ss_pred EECccceEEEEEEeCCCcc-cceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHH----HHhhhCCCEEEEC
Confidence 9999999999988876432 22445577888888643 3455666554443333332210 1122345677773
Q ss_pred ecCCeEEEEEccCC--Cc-eEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCE------------EEEe
Q 003331 619 STSGRLTAISVKAL--PF-HTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSI------------IWRC 681 (829)
Q Consensus 619 t~~g~l~~~~~~~~--~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~------------~w~~ 681 (829)
++.|.++|..++ .+ +.+-.+..+. ......+++++.++++++. +..+.++| .+.+. .-+.
T Consensus 295 --gn~V~VID~~t~~~~~~~v~~yIPVGK-sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 295 --GSKVPVVDGRKAANAGSALTRYVPVPK-NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred --CCEEEEEECCccccCCcceEEEEECCC-CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 457889996641 01 2333333322 2245677889999998865 67889999 55442 2222
Q ss_pred ecCCceeecCcccccCCCeEEEE-eeCCeEEEEeCCC
Q 003331 682 RTGGPIFAGPCTSFALPSQVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~t 717 (829)
..+...+. ..++.+|..|+. ..|..|..||..+
T Consensus 372 evGlGPLH---TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 ELGLGPLH---TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCCcce---EEECCCCCEEEeEeecceeEEEehHH
Confidence 22221111 124556677765 3477899998765
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2 Score=48.65 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=98.7
Q ss_pred CeEEEEEcCCCeEEEeeccCCc-ccccceeecCCCEEEE-EecC------CeEEEEEccCCCceEEEeeccCCcc-eeee
Q 003331 580 HNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYV-ASTS------GRLTAISVKALPFHTLWLHELEVPA-FASL 650 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~l~v-~t~~------g~l~~~~~~~~~g~~~w~~~~~~~~-~~s~ 650 (829)
..+.+||+.+++-.+....... .....++.+ +.||+ |+.+ ..+..||+.+ .+ |..-..... ....
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~--~~--W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRT--NQ--WTPVAPMNTKRSDF 374 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCC--Cc--eeccCCccCccccc
Confidence 3577888888732222222211 122233333 56665 4444 2477888886 33 865322111 1222
Q ss_pred eeeecCCEEE-EEeeCC-----eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee-C------CeEEEEeCC
Q 003331 651 CITSANRHVI-CCLVDG-----HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-N------GSIYSFEQE 716 (829)
Q Consensus 651 ~~~~~~~~l~-~~~~~g-----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~------g~l~~~d~~ 716 (829)
.+..-++.+| +|+.+| .+-+|| .+. .|..-.+-......+-....++.||+... + ..+.+||+.
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~--~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTN--KWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCCCC--cccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 2222344444 454443 366777 332 36654322111111111223677876532 2 358899988
Q ss_pred CCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC-----cEEEEEeecCccccccccccccceeeeeec
Q 003331 717 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG-----SIHILRVNLDVTGKENQSKDHMVQEFAKLE 791 (829)
Q Consensus 717 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G-----~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 791 (829)
+++ |+...+-......... ...++..+++|+.+| .+.+||+.+. .|....
T Consensus 453 t~~--W~~~~~M~~~R~~~g~---------a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~--------------~W~~v~ 507 (571)
T KOG4441|consen 453 TNT--WTLIAPMNTRRSGFGV---------AVLNGKIYVVGGFDGTSALSSVERYDPETN--------------QWTMVA 507 (571)
T ss_pred CCc--eeecCCcccccccceE---------EEECCEEEEECCccCCCccceEEEEcCCCC--------------ceeEcc
Confidence 764 5443221110000000 001133444455554 2566766633 222221
Q ss_pred -cCC-cccccceEECCEEEEe-ee-----CCeEEEEeccccccc
Q 003331 792 -LQG-DIFSSPVMIGGRVFVG-CR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 792 -~~~-~~~~s~~~~~~~l~vg-~~-----~g~l~~~d~~tg~~~ 827 (829)
+.. ......+..++.+|+. .. -+.+-+||+.+.+.+
T Consensus 508 ~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 508 PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 111 1112335578888774 22 357888898887654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.88 E-value=3.1 Score=45.06 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCC--eEEEEEccCCCceEEEeeccCCcceeeeeeeecC
Q 003331 580 HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSG--RLTAISVKALPFHTLWLHELEVPAFASLCITSAN 656 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 656 (829)
..++.+|..+|+..-.....+ ....|.+.+++..|.+. ..+| .||.+|..+ +.+++..........+.+.+++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g-~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~---~~~~~Lt~~~gi~~~Ps~spdG 293 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG-NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG---KNLPRLTNGFGINTSPSWSPDG 293 (425)
T ss_pred ceEEEEeccCCccceeeccCC-ccCCccCCCCCCEEEEEECCCCCccEEEEcCCC---CcceecccCCccccCccCCCCC
Confidence 358999999887655544333 33456666666766554 4444 478888875 3355544333334567788889
Q ss_pred CEEEEEeeCC---eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEee-CCe--EEEEeCCCCcEEEEE
Q 003331 657 RHVICCLVDG---HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGS--IYSFEQESGNLLWEY 724 (829)
Q Consensus 657 ~~l~~~~~~g---~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~--l~~~d~~tG~~~w~~ 724 (829)
..+++.+..+ .|+.+|.+|...-++.....-.+.|.+..+. ..+.+.+. +|. |...|..++.. |..
T Consensus 294 ~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG-~~i~~~~~~~g~~~i~~~~~~~~~~-~~~ 365 (425)
T COG0823 294 SKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDG-DKIVFESSSGGQWDIDKNDLASGGK-IRI 365 (425)
T ss_pred CEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCC-CEEEEEeccCCceeeEEeccCCCCc-EEE
Confidence 9888887644 4788884444333333333222344333322 23333332 343 77777766665 443
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.2 Score=37.32 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=63.4
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
+.|++||.|..|..|+ ..++++.+...+.+..-..+ ..+.+..+..+|+|-.|+. .+.+|+.+....+.+...+
T Consensus 16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSL--GGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEc--CCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEEEE
Confidence 4799999999999997 45788888766665543333 3477888889999999985 4678998876665555555
Q ss_pred ecCCC---EEEEEecCCeE
Q 003331 609 DEVHD---VLYVASTSGRL 624 (829)
Q Consensus 609 ~~~~~---~l~v~t~~g~l 624 (829)
+-+++ -|.+|-.+|.+
T Consensus 90 D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKV 108 (111)
T ss_pred cCCCCCceEEEEEecCCeE
Confidence 44221 46666666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.7 Score=49.38 Aligned_cols=168 Identities=10% Similarity=0.141 Sum_probs=77.1
Q ss_pred EEEEEEcCCCcEEEEEecC--Cee-eeeeeeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeeccC--Cccc-ccc
Q 003331 539 KIYFLDYLTGDIYWTFQTC--GEV-KCQPVVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPCG--GSIF-GSP 606 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~--~~~-~~~~~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~~--~~~~-~~~ 606 (829)
.+++||..+++ |..... ... ..+.+.. ++.||+ |+.+ ..+.+||+.++ .|+.... .... .+.
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~ 385 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCV 385 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceE
Confidence 58899987654 543211 011 1112222 244554 5543 34788888765 4764321 1111 111
Q ss_pred eeecCCCEEEEEec---C----CeEEEEEccCCCceEEEeeccCCcce-eeeeeeecCCEEEEEe-eC--------CeEE
Q 003331 607 AIDEVHDVLYVAST---S----GRLTAISVKALPFHTLWLHELEVPAF-ASLCITSANRHVICCL-VD--------GHVV 669 (829)
Q Consensus 607 ~~~~~~~~l~v~t~---~----g~l~~~~~~~~~g~~~w~~~~~~~~~-~s~~~~~~~~~l~~~~-~~--------g~i~ 669 (829)
+.. ++.+|+.+. + ..+..||+.+ . .|..-...+.. ........++.+|+.+ .+ ..++
T Consensus 386 ~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 386 VNV--NNLIYVIGGISKNDELLKTVECFSLNT--N--KWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred EEE--CCEEEEECCcCCCCcccceEEEEeCCC--C--eeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 222 367776432 1 3578888876 3 47653322211 1112222345555532 21 2378
Q ss_pred EEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEee------CCeEEEEeCCCCcEEEEE
Q 003331 670 ALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSR------NGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~------~g~l~~~d~~tG~~~w~~ 724 (829)
+|| .++ .|+.-... +...... ...++.||+.+. .+.+.+||+.+. .|..
T Consensus 460 ~yd~~~~--~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 517 (534)
T PHA03098 460 SYNPVTN--KWTELSSLNFPRINASL--CIFNNKIYVVGGDKYEYYINEIEVYDDKTN--TWTL 517 (534)
T ss_pred EecCCCC--ceeeCCCCCcccccceE--EEECCEEEEEcCCcCCcccceeEEEeCCCC--EEEe
Confidence 888 544 35542211 1111111 112556665432 236788887755 3653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.9 Score=47.30 Aligned_cols=197 Identities=11% Similarity=0.059 Sum_probs=96.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeC-C----EEEEEEcCC---Cc---E
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYK-G----KIYFLDYLT---GD---I 550 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~d-g----~l~~~d~~t---G~---~ 550 (829)
+..++.|++|+.+|.|..+|.. -+.+..+.... ++....-..++...++.-..| + .|..||++. +. +
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3467899999999999999843 33323333221 112122222222344433222 2 356666532 12 2
Q ss_pred E---EEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC----CCeEEEeec-cCCcccccceeecCCCE-EEE
Q 003331 551 Y---WTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR----NYRCVYKLP-CGGSIFGSPAIDEVHDV-LYV 617 (829)
Q Consensus 551 ~---w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~----tg~~~w~~~-~~~~~~~~~~~~~~~~~-l~v 617 (829)
+ ..+. +...+.++..+..+-..|.+|-.+|.|+++.-. -|. +-.+. .++..+....+..++.. +++
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-r~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-RQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-ceeeeccCCCCceeeEEecCCceeEEE
Confidence 2 1111 123445556666677889999999999988521 111 11111 12233333444333343 677
Q ss_pred EecCCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 618 ASTSGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
+|.. .|..|.....+ +.-. .+..+-......... ...-++++....++.|+ ..-++-|.+..+.
T Consensus 190 ~Tt~-~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~-~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 190 ATTE-QVMLYSLSGRT--PSLKVLDNNGISLNCSSFSD-GTYQFICAGSEFLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred Eecc-eeEEEEecCCC--cceeeeccCCccceeeecCC-CCccEEEecCceEEEEcCCCcceeeeecCCC
Confidence 7765 47777766422 1211 222222222222222 22224444567899999 4334557766443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.7 Score=49.37 Aligned_cols=129 Identities=14% Similarity=0.150 Sum_probs=63.2
Q ss_pred cEEEEECCCCcEEEEEEc--C-CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Cee-eeeee
Q 003331 497 KFICADAKRSSVLWEIKL--E-GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEV-KCQPV 565 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~--~-~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~-~~~~~ 565 (829)
.+++||+.+.+ |..-. + .+.. ..++..++...++|+.+ ..+.+||+.++ .|+.... ... ..+.+
T Consensus 312 ~v~~yd~~~~~--W~~~~~~~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 312 SVVSYDTKTKS--WNKVPELIYPRKN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGES--KWREEPPLIFPRYNPCVV 386 (534)
T ss_pred cEEEEeCCCCe--eeECCCCCccccc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCC--ceeeCCCcCcCCccceEE
Confidence 58899988765 74321 1 1111 22233343334455543 35788997765 4764221 111 11112
Q ss_pred eecCCCEEEE-eccC------CeEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEEec-C--------CeEEE
Q 003331 566 VDAPRQLIWC-GSHD------HNLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVAST-S--------GRLTA 626 (829)
Q Consensus 566 ~~~~~~~i~~-gs~~------g~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~t~-~--------g~l~~ 626 (829)
. -++.||+ |+.+ ..+++||+.++ .|..... .... .+.+.. ++.||+.+. + ..+++
T Consensus 387 ~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 387 N--VNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred E--ECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEE
Confidence 2 2356665 4321 35889998875 4764322 1111 122223 366766432 1 23788
Q ss_pred EEccCCCceEEEee
Q 003331 627 ISVKALPFHTLWLH 640 (829)
Q Consensus 627 ~~~~~~~g~~~w~~ 640 (829)
||+.+ ..|..
T Consensus 461 yd~~~----~~W~~ 470 (534)
T PHA03098 461 YNPVT----NKWTE 470 (534)
T ss_pred ecCCC----Cceee
Confidence 88776 34654
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.74 Score=51.40 Aligned_cols=43 Identities=21% Similarity=0.489 Sum_probs=37.6
Q ss_pred EecCceEEEc----cCCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003331 149 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
||.||+++.. ..-.+.|++|.+-+..+.|+|++-.++..++.+
T Consensus 423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~ 469 (612)
T PLN02620 423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKN 469 (612)
T ss_pred EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHH
Confidence 8999999973 335799999999999999999999999888765
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.27 Score=54.81 Aligned_cols=44 Identities=16% Similarity=0.367 Sum_probs=38.4
Q ss_pred EecCceEEEc----cCCcEEEEeecCCcEEECCeeeChHHHHHHHhCC
Q 003331 149 FRTGDFARRI----QSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192 (829)
Q Consensus 149 ~~TGDl~~~~----~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~ 192 (829)
||.||+++.. ..-.+.|++|.+.+..+.|+|++-.++..++.+.
T Consensus 417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 8999999863 3357999999999999999999999998888763
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.8 Score=40.51 Aligned_cols=228 Identities=11% Similarity=0.089 Sum_probs=114.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC----cEEEEEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG----DIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG----~~~w~~~~~ 557 (829)
.+..||..+.|-.+..|-..+--..|.-- .+.. ........+-..+++|-.+|.++-+....- .+...+..+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~-~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSP-CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCC-ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 45567878888777776544333456421 1111 112233444457899988888887764321 111222223
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
.......+++.....|+..+.|..+.---.+.|.-+-.+..... -+.+.++- ...|+|-..|.+.........-.++
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~-~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i 190 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP-ASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLI 190 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc-CCCCceee--EEEEecccccceEEEEEeecCCceE
Confidence 33334445554555666666554433222233322211111110 11122222 3667777777766555443224455
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCC--EEEEeec-CCceeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGS--IIWRCRT-GGPIFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~--~~w~~~~-~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
-+................++.++.|..+..+..+|--|. ....... ...+...-. ...-..++....||.|.+||
T Consensus 191 ~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~--~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 191 TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY--AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh--hhhheeeeeccCCCeEEEEe
Confidence 555444444455556667788899998999999982221 1122111 111111110 11123577788899999999
Q ss_pred CCCC
Q 003331 715 QESG 718 (829)
Q Consensus 715 ~~tG 718 (829)
-+..
T Consensus 269 mn~~ 272 (404)
T KOG1409|consen 269 MNVK 272 (404)
T ss_pred ccce
Confidence 7654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.7 Score=44.62 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
..|.+..++.+..|..+|.++...+-.+..+..+++...--++.+.||.|-.+|.|+.||....
T Consensus 205 ~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 205 NEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 4567888899999999999998888888777666654443444678999999999999998753
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.5 Score=42.69 Aligned_cols=109 Identities=11% Similarity=0.098 Sum_probs=66.0
Q ss_pred eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 562 CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+.....++..+..++. +..+..||+.+|..+--...+..-++..-.+++++.++.++.|+....|+.+..--+..|..
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 34445555555555554 45799999999876544333444445556777889999999999888886443112334443
Q ss_pred ccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc
Q 003331 641 ELEVPAFASLCITSANRHVICCL-VDGHVVALD 672 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d 672 (829)
..+ ...+.+.++.+..+.+.. ....+|.+.
T Consensus 279 gsg--rvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 279 GSG--RVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred cCC--ceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 222 334556666676665544 344556554
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.24 Score=55.74 Aligned_cols=185 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--eccCCccccc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGGSIFGS 605 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~~~~~~~~ 605 (829)
...+++.+-| .+.+.+.++|.+.|+.... .+...+..... -....+-.+|.+|.+-- +..+.+ +........+
T Consensus 27 e~~~~~stid-~l~a~s~~~g~~~~~l~~~-pvv~~~~~~~~-~~fl~~p~dgsly~l~~--~~sL~Klpftipelv~~~ 101 (903)
T KOG1027|consen 27 ENLLLVSTID-SLHAPSSETGFIKWTLSDD-PVVASPDGVLQ-PAFLPDPRDGSLYTLGN--NLSLTKLPFTIPELVNAS 101 (903)
T ss_pred cccccccccc-cccCccccccceeeeeccC-ccccCCccccc-cccCCCccccceeeccC--CCccccCCccchhhhccC
Confidence 3566777777 7889999999999976432 22211111100 00111223455554432 222222 1222233455
Q ss_pred ceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 606 PAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 606 ~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
|+-. +++.+|.++.++..+.+|+++ |+..|.+....++ ...++.|-.+-++..+| .+-..-|.....
T Consensus 102 pcrs-sdGi~ysg~k~d~~~lvD~~t--g~~~~tf~~~~~~---------~~~v~~grt~ytv~m~d~~~~~~~wn~t~~ 169 (903)
T KOG1027|consen 102 PCRS-SDGILYSGSKQDIWYLVDPKT--GEIDYTFNTAEPI---------KQLVYLGRTNYTVTMYDKNVRGKTWNTTFG 169 (903)
T ss_pred cccC-CCCeEEecccccceEEecCCc--cceeEEEecCCcc---------hhheecccceeEEecccCcccCceeecccc
Confidence 5544 379999999999999999998 9999988766532 23455554455566666 433344654433
Q ss_pred CceeecCcccccCCC--eEEEEeeCCeEEEEeCCCCcEEEEEecCCccc
Q 003331 685 GPIFAGPCTSFALPS--QVLICSRNGSIYSFEQESGNLLWEYSVGDPIT 731 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~--~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~ 731 (829)
......+ ...... .-+..+.+|.+.-+|.++|..+|..+..+++.
T Consensus 170 dy~a~~~--~~~~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv 216 (903)
T KOG1027|consen 170 DYSAQYP--SGVRGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVV 216 (903)
T ss_pred chhccCC--CccCCceeEEEeecCCccEEeccCcccceeeccccCCceE
Confidence 2221111 011111 12222337778889999999999877666543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.5 Score=35.42 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=62.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
....|.+||.|..|..|+ ..+.+++....+.+. ....-.++.+..+..+|+|-.|+. .+.+|+.+....+.+..
T Consensus 14 g~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~--~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~~ 87 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFK--GDEIVAEITETDKVT--SLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSMA 87 (111)
T ss_pred CcceEEEecCCcEEEEEe--CCcEEEEEecccceE--EEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEEE
Confidence 347899999999999997 457888887776653 222233457778888999999983 67889988776665555
Q ss_pred eeecCC---CEEEEeccCCeE
Q 003331 565 VVDAPR---QLIWCGSHDHNL 582 (829)
Q Consensus 565 ~~~~~~---~~i~~gs~~g~l 582 (829)
.++.++ .-|.+|-.+|.+
T Consensus 88 ~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 88 FYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred EEcCCCCCceEEEEEecCCeE
Confidence 544321 136666555543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.46 Score=49.66 Aligned_cols=277 Identities=13% Similarity=0.090 Sum_probs=133.9
Q ss_pred EeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEe--eCCcEEEEEEeCCEEEEEE-cCCCcEEEEE--
Q 003331 481 VLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVL--ADFSQVVVGCYKGKIYFLD-YLTGDIYWTF-- 554 (829)
Q Consensus 481 ~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~--~~~~~v~vg~~dg~l~~~d-~~tG~~~w~~-- 554 (829)
.+...+..+..|+.+-.+..||-.+++..-.+..+.. .+...-+. .+...+...+.||.+..=. ..+|.+..+.
T Consensus 149 ~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl 228 (559)
T KOG1334|consen 149 HFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL 228 (559)
T ss_pred eecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec
Confidence 3445677888899999999999988887766554321 11111111 1223455555555443211 1445443221
Q ss_pred -ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC---Cc---ccccceeecCC-CEEEEEecCCeEEE
Q 003331 555 -QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---GS---IFGSPAIDEVH-DVLYVASTSGRLTA 626 (829)
Q Consensus 555 -~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~---~~---~~~~~~~~~~~-~~l~v~t~~g~l~~ 626 (829)
...+.+....+.......++..+.|+.+.-+|..++.+.-++.+. .. -..++.+++.. ..+.++..+-.+..
T Consensus 229 ~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~Rv 308 (559)
T KOG1334|consen 229 APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARV 308 (559)
T ss_pred ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhh
Confidence 222333333233334566788888999999998877654433321 11 11223333322 23444554544555
Q ss_pred EEccCCCce----EEEeecc-----CCccee-eeeeeecCCEEEEEeeCCeEEEEc---CCCCE----------EEE-ee
Q 003331 627 ISVKALPFH----TLWLHEL-----EVPAFA-SLCITSANRHVICCLVDGHVVALD---SSGSI----------IWR-CR 682 (829)
Q Consensus 627 ~~~~~~~g~----~~w~~~~-----~~~~~~-s~~~~~~~~~l~~~~~~g~i~~~d---~~g~~----------~w~-~~ 682 (829)
||......+ .+-++-. ..+... ..++..+++.+.+.-.+-.||.++ ..|.. .-+ ++
T Consensus 309 YD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK 388 (559)
T KOG1334|consen 309 YDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK 388 (559)
T ss_pred hcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc
Confidence 553221011 0111100 111112 223333566666666677788887 24411 111 11
Q ss_pred cCCceeecCccccc--CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 683 TGGPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 683 ~~~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
...+-.....+.+- ....|..|+.=|+|+.|+.++++++-.+.....+....- +.+.--.++...-+
T Consensus 389 GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLE-----------pHP~~PvLAsSGid 457 (559)
T KOG1334|consen 389 GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLE-----------PHPHLPVLASSGID 457 (559)
T ss_pred ccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccC-----------CCCCCchhhccCCc
Confidence 10000000001111 234677777779999999999998765554433322111 11123344555556
Q ss_pred CcEEEEEe
Q 003331 761 GSIHILRV 768 (829)
Q Consensus 761 G~l~~~d~ 768 (829)
..|.+|-+
T Consensus 458 ~DVKIWTP 465 (559)
T KOG1334|consen 458 HDVKIWTP 465 (559)
T ss_pred cceeeecC
Confidence 66777755
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.47 Score=47.36 Aligned_cols=146 Identities=13% Similarity=0.222 Sum_probs=89.9
Q ss_pred EecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EE---EEecCCeeeeeee
Q 003331 491 VGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YW---TFQTCGEVKCQPV 565 (829)
Q Consensus 491 igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w---~~~~~~~~~~~~~ 565 (829)
+|... .+...|..||...- |.....+ .+.-+...+..|+.|+.+|.|+.+|+..+.. .| .+-.+..+.+-.+
T Consensus 230 ~G~sq-qv~L~nvetg~~qs-f~sksDV-fAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 230 VGLSQ-QVLLTNVETGHQQS-FQSKSDV-FALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ccccc-eeEEEEeecccccc-cccchhH-HHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 34444 47788988887543 3322222 1333444567899999999999999876521 22 2333444444444
Q ss_pred eecCCCEEEEeccCCeEEEEEcCCCeE---EEeeccCCcc--cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 566 VDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPCGGSI--FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~~~~~--~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
+.-++..+.+.+.+|.|..||..--++ +-.+..+.+. ....-+++..+.|+.+..|-....|.++. |..+-+.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~--ghLl~ti 384 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS--GHLLCTI 384 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc--Cceeecc
Confidence 444567788888999999999764343 4444433221 12223455667888888887777888776 6665544
Q ss_pred c
Q 003331 641 E 641 (829)
Q Consensus 641 ~ 641 (829)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 3
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=7.3 Score=43.68 Aligned_cols=231 Identities=12% Similarity=0.128 Sum_probs=121.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceE----------EeeC--CcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAA----------VLAD--FSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~----------~~~~--~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
..|.+..|+++- |..+|..+-+.+-....+...+.++- .++. .-.+.++.-.|.|..+|...+..+-
T Consensus 25 ~~GLiAygshsl-V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 25 PSGLIAYGSHSL-VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred ccceEEEecCce-EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 356777888764 88889877776655555433211111 1111 1134555567899999988887654
Q ss_pred EEecCCeeeee----eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEE
Q 003331 553 TFQTCGEVKCQ----PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAI 627 (829)
Q Consensus 553 ~~~~~~~~~~~----~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~ 627 (829)
.++.+...... +.-++....+.+-.....+..|+..||+..|++.....+.+...+++ +...+.+-+..|.+...
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 34433222111 11122334555555556899999999999999987765554333333 12344445556655554
Q ss_pred Ecc-----CCCceEEEeeccC-C-----------cc---------e----eeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 628 SVK-----ALPFHTLWLHELE-V-----------PA---------F----ASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 628 ~~~-----~~~g~~~w~~~~~-~-----------~~---------~----~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
+.- ..+|+...-.... . .. | .-.++.+.-.++.+.+....++++| +--.
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 421 1123322211110 0 00 0 0012233445556666778899998 5444
Q ss_pred EEEEeecCCc--eeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 677 IIWRCRTGGP--IFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 677 ~~w~~~~~~~--~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.+.....+.. .+. .+++....+.+|+.-.||.+..+-.+.
T Consensus 264 ~l~vvpier~~akfv-~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 264 CLAVVPIERGGAKFV-DVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eeEEEEeccCCccee-EeccCCCcceEEEEecCCeEEEEEeec
Confidence 4444443221 111 111222345688888888777665443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.81 E-value=7 Score=38.02 Aligned_cols=194 Identities=9% Similarity=-0.026 Sum_probs=97.9
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEE-EecC-CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWT-FQTC-GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~-~~~~-~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+++++|+..|.+-.|...|.+..-. .+.. ..+...--..+..-.+.+++.|..+..++.+.+..........-...+.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4677776667666666654443221 1111 1110000011123346667777666666554433222222211123455
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEe-eccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-C-CCCEEEEee
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWL-HELEV-PAFASLCITSANRHVICCLVDGHVVALD-S-SGSIIWRCR 682 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~-~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~ 682 (829)
.++.++....+......|..|.++.. ++.+-+ +.... ..-....+...+....+++.+|.+.+|| . .+.+.-...
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~-sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDE-SEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCc-cceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 56665565655566667777776652 333222 21111 1111223444455677889999999999 4 454443222
Q ss_pred c-----CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 683 T-----GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 683 ~-----~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
. .+.+....+......+.+++.-+-+.+..+|.++++-.-.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 1 1222222222223345788888888999999999875433
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.78 E-value=9.4 Score=39.41 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=53.1
Q ss_pred eEEeeCCCeEEEEecCCCcEEEEECC--------C----CcEEEEEEc----CCceeeceEEeeCCcEEEEEEeCCEEEE
Q 003331 479 LVVLKDSDIYLFVGSHSHKFICADAK--------R----SSVLWEIKL----EGRIECSAAVLADFSQVVVGCYKGKIYF 542 (829)
Q Consensus 479 ~v~~~d~~~~l~igs~~g~l~~~d~~--------t----g~~~w~~~~----~~~~~~~~~~~~~~~~v~vg~~dg~l~~ 542 (829)
+|-++..++.+..|+.+|.+.+|-.. + .++.|.... +..-..-.+.++++..+.+++.|+.++.
T Consensus 70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 34444556677777788888888644 2 144464321 1111224567778888999999999999
Q ss_pred EEcCCCcEEEEEecCC
Q 003331 543 LDYLTGDIYWTFQTCG 558 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~ 558 (829)
||...|.+.-...-+.
T Consensus 150 ~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHE 165 (434)
T ss_pred EEeccceeEeeccccc
Confidence 9999999887654443
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=7.7 Score=38.41 Aligned_cols=181 Identities=14% Similarity=0.098 Sum_probs=104.6
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC---eEEEeeccCC
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGG 600 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~ 600 (829)
.++++|+..++.+|..+|..+-. ++-.+.+.+-.. .+.-.++..|++..+..+..+|..+- .+.-++...+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay---gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~ 171 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY---GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG 171 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE---EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCC
Confidence 45689999999999999976532 333333332222 23335688999987777888887653 2222332222
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.-.-...++. ++-|++.+++++..+|..+..- ..+-++..+. . .......+++.|+.-.+.++...| .+-+-.
T Consensus 172 ~d~~~v~ISG--n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~-g--~~sv~vsdnr~y~vvy~egvlivd~s~~ssp 246 (370)
T COG5276 172 GDTHDVAISG--NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGP-G--TYSVSVSDNRAYLVVYDEGVLIVDVSGPSSP 246 (370)
T ss_pred CCceeEEEec--CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCC-c--eEEEEecCCeeEEEEcccceEEEecCCCCCc
Confidence 2222334544 8899999999999999875221 2222333222 1 223334567888877788888888 444444
Q ss_pred EEeec---CCceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 679 WRCRT---GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 679 w~~~~---~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
|.+.. ..+...+. ....+...|+...+.++..+|.++
T Consensus 247 ~~~gsyet~~p~~~s~--v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 247 TVFGSYETSNPVSIST--VPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eEeeccccCCcccccc--eecccceeeeeccccCceeEeccC
Confidence 54432 22211111 122356778777666677776554
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.55 Score=49.70 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=52.9
Q ss_pred ccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE
Q 003331 602 IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII 678 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~ 678 (829)
.+...++.+++..+.+.+.||.|.+||..+ -+.+-..+.--..+...+.++++++|.+|..|.-|.+|. ..++++
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt--~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDT--QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccH--HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 344456666778999999999999999876 332221111112235677888999999999999888888 766665
|
|
| >COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=11 Score=39.28 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc-CCCcEEEEEecCCeee
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY-LTGDIYWTFQTCGEVK 561 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~-~tG~~~w~~~~~~~~~ 561 (829)
.++.++|+. ..+.+|.+|..--.. -+ ....+.-+..+.-.++.+.++...| ++.++. ++-+.+|.++..+...
T Consensus 109 tdG~~iy~s-~~~KvYvi~~~pp~~-~~--i~~~i~ecg~l~l~~nvL~i~~~~g-it~yn~~e~~k~vw~~~fnGsyv 182 (603)
T COG4880 109 TDGERIYVS-VNGKVYVIDKNPPLL-ET--IDCPIPECGILALGGNVLAIGEVGG-ITLYNLYESSKKVWVYNFNGSYV 182 (603)
T ss_pred cCCcEEEEE-eCCeEEEEcCCCchh-hh--cccCCccceEEEEcCcEEEEEEeCC-EEEEEeccccceeEEEecCCcee
Confidence 356677764 567799887643221 11 1222222344445566788887654 888887 7889999988776543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.49 Score=47.24 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE--EEEE--EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE---EEEEec
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV--LWEI--KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI---YWTFQT 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~--~w~~--~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~---~w~~~~ 556 (829)
.+..|+.|..+|.|+.+|+.++.. .|.. -.++...++.-... ++..+.+.+.+|.|..||..--+. +.+|+.
T Consensus 263 s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG 342 (425)
T KOG2695|consen 263 SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG 342 (425)
T ss_pred cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec
Confidence 467789999999999999987521 2321 12333223332223 566788888899999999754443 566655
Q ss_pred CCee--eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 557 CGEV--KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 557 ~~~~--~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
+... ....-+.+..+.|+.++.|...+.|..++|.++-+...
T Consensus 343 HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 343 HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 4322 12223455778899999999999999999998876544
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.46 E-value=7.2 Score=41.44 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=87.4
Q ss_pred EEEEECCCCcEEEE-EE----cCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEec--CCee--eee
Q 003331 498 FICADAKRSSVLWE-IK----LEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQT--CGEV--KCQ 563 (829)
Q Consensus 498 l~~~d~~tg~~~w~-~~----~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~--~~~~--~~~ 563 (829)
+..+|+.+++..+. .. ..+.....+....++..+++-..+ -.++.+|..+|+..+.... .+-+ ...
T Consensus 160 l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~ 239 (353)
T PF00930_consen 160 LFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDP 239 (353)
T ss_dssp EEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSE
T ss_pred EEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecc
Confidence 66677788876542 12 123445566777777656665433 2578889988887665432 2211 122
Q ss_pred eee--ecCCCEEEEeccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-----CCeEEEEEcc-CCC
Q 003331 564 PVV--DAPRQLIWCGSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-----SGRLTAISVK-ALP 633 (829)
Q Consensus 564 ~~~--~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-----~g~l~~~~~~-~~~ 633 (829)
+.+ .++...+++...+| +||.++..++...+.....-.+.....++.+++.||+.+. ...||.++.+ .
T Consensus 240 ~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-- 317 (353)
T PF00930_consen 240 PHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-- 317 (353)
T ss_dssp EEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET--
T ss_pred cccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC--
Confidence 333 24556677766554 6999998888766433222233344556776777776543 2368888877 4
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVI 660 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~ 660 (829)
|+. -.+........+..++++++.+.
T Consensus 318 ~~~-~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 318 GEP-KCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp TEE-EESSTTSSTTEEEEE-TTSSEEE
T ss_pred CCe-EeccCCCCCceEEEECCCCCEEE
Confidence 433 23332222213455555544443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.29 Score=51.49 Aligned_cols=147 Identities=18% Similarity=0.277 Sum_probs=94.8
Q ss_pred CCeEEEEecCCCcEEEEECC-------CCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe--
Q 003331 485 SDIYLFVGSHSHKFICADAK-------RSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-- 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~-------tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-- 555 (829)
..+..+.++.|.++..|..+ |....|++..+.+......+..+. -++.+-|++|..||+--|+++-...
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~ScD~giHlWDPFigr~Laq~~da 823 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL--RSIASCDGGIHLWDPFIGRLLAQMEDA 823 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc--ceeeeccCcceeecccccchhHhhhcC
Confidence 44556667788888888754 334678877776655556665552 2555558999999998888754221
Q ss_pred ----cCCeeeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCe--EEEeecc-C--CcccccceeecCCCEEEEEecCCeEE
Q 003331 556 ----TCGEVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYR--CVYKLPC-G--GSIFGSPAIDEVHDVLYVASTSGRLT 625 (829)
Q Consensus 556 ----~~~~~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~--~~w~~~~-~--~~~~~~~~~~~~~~~l~v~t~~g~l~ 625 (829)
..+.+++.+.++ ...+..| +...++..+|...++ +.|+.-. . ........+.+.++.+.++-.+|.+.
T Consensus 824 pk~~a~~~ikcl~nv~--~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~ 901 (1034)
T KOG4190|consen 824 PKEGAGGNIKCLENVD--RHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIA 901 (1034)
T ss_pred cccCCCceeEecccCc--chheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEE
Confidence 123444444332 3445555 566789999988765 3455432 1 22344455666677888888899999
Q ss_pred EEEccCCCceEE
Q 003331 626 AISVKALPFHTL 637 (829)
Q Consensus 626 ~~~~~~~~g~~~ 637 (829)
.+|..+ |+.+
T Consensus 902 ~LDaR~--G~vI 911 (1034)
T KOG4190|consen 902 ILDARN--GKVI 911 (1034)
T ss_pred EEecCC--Ccee
Confidence 999888 8765
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.29 E-value=7.8 Score=36.97 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=31.1
Q ss_pred ccCCCeEEEEeeC-CeEEEEeCCCCcEEEEEecCCccccc
Q 003331 695 FALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGDPITAS 733 (829)
Q Consensus 695 ~~~~~~i~~~t~~-g~l~~~d~~tG~~~w~~~~~~~~~~~ 733 (829)
.+.+|.+|+.+.+ |+|+.+|+.||+++-++.++.+-..+
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 4567899999875 57999999999999888877654433
|
|
| >PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.1 Score=46.92 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=32.0
Q ss_pred CeEEEEEcCC-CeEEEeeccCC--ccccccee-ecC-C---CEEEEEecCCeEEEEEccC
Q 003331 580 HNLYALDFRN-YRCVYKLPCGG--SIFGSPAI-DEV-H---DVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 580 g~l~~~d~~t-g~~~w~~~~~~--~~~~~~~~-~~~-~---~~l~v~t~~g~l~~~~~~~ 631 (829)
..||.+|+++ |+.+|++.... ...+.|.+ +.+ + +.+|+|...|.|+++|+..
T Consensus 181 ~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 181 AALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--T
T ss_pred cEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCC
Confidence 4699999999 99999987643 12334433 211 2 3689999999999999874
|
PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A. |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=50.69 Aligned_cols=280 Identities=11% Similarity=0.074 Sum_probs=142.0
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEEC--CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE
Q 003331 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADA--KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 539 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~--~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~ 539 (829)
.+..|.....+++.+.-.. .....+|+|+..|....+=+ .+|-..|....-+.+. ....... .++.-+ +..
T Consensus 45 ~~L~~~~~~~G~vS~v~fd---~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~-~~~~~~~--~i~~ls-~~a 117 (1118)
T KOG1275|consen 45 AELISVGASYGTVSSVHFD---LHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVR-RIEPTES--GIFTLS-KTA 117 (1118)
T ss_pred cceeeeccccccccccccC---chHHhheecccCCceeeeecccccceEEEEEeccchhh-hhhhhhh--hheeee-HHH
Confidence 5677888877766543222 26778999999887665543 3344445443222111 1111111 122221 111
Q ss_pred EEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 540 IYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 540 l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
+ ..-...|.++..+.....- +.+.+.. +...+..|.....+..+|..+++.........+- ..++-.++..+++|
T Consensus 118 l-r~~~r~gl~~~~~~~~s~~~M~~~~~~-~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--v~imR~Nnr~lf~G 193 (1118)
T KOG1275|consen 118 L-RATTRQGLPVFDFTCPSMTKMASSLHM-GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--VTIMRYNNRNLFCG 193 (1118)
T ss_pred h-hhhhccCceeecccCCCHHHHHHHhcc-CCcceeecchhhheeeeecccceeeeeeeccCCc--eEEEEecCcEEEee
Confidence 1 1122345555544433311 1111122 3345556666667999999988877666554322 12233345778899
Q ss_pred ecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC---Cce--eecCc
Q 003331 619 STSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG---GPI--FAGPC 692 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~---~~~--~~~~~ 692 (829)
...|.|...|+++ .+.+.++..+....+. +...++.+..++..+..+-+. .-=-.+|-...- .|+ ...|.
T Consensus 194 ~t~G~V~LrD~~s--~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~ 269 (1118)
T KOG1275|consen 194 DTRGTVFLRDPNS--FETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ 269 (1118)
T ss_pred cccceEEeecCCc--Cceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch
Confidence 9999999999998 8888888776654433 333577777776655443222 100112221110 011 01110
Q ss_pred ----ccccCCCeEEEEeeCCeEEEEeCCC-CcE-EE-EEecCCccccccccccccccccccccCCCcEEEEEccCCcEEE
Q 003331 693 ----TSFALPSQVLICSRNGSIYSFEQES-GNL-LW-EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHI 765 (829)
Q Consensus 693 ----~~~~~~~~i~~~t~~g~l~~~d~~t-G~~-~w-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~ 765 (829)
.+. --..+.+.+..|.....|..+ +.. .- .+..+....... -....+++.+.+|..+|.|..
T Consensus 270 flrf~Ps-l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~----------fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 270 FLRFHPS-LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISA----------FDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred hhhhccc-ccceEEEEecccceeeccccccCCCccceeEEccCCCccee----------EEecCCCceEEEecccCcEee
Confidence 111 123566777777777777322 111 11 111111110000 112334889999999999999
Q ss_pred EE
Q 003331 766 LR 767 (829)
Q Consensus 766 ~d 767 (829)
|.
T Consensus 339 wa 340 (1118)
T KOG1275|consen 339 WA 340 (1118)
T ss_pred ec
Confidence 96
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=93.01 E-value=16 Score=39.83 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=104.1
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-----------EEEEEEcCCCc----EEEEEecCCeee
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-----------KIYFLDYLTGD----IYWTFQTCGEVK 561 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-----------~l~~~d~~tG~----~~w~~~~~~~~~ 561 (829)
.++.+|+.+|+.+-.. +......++.+.+++..+|....+. .|++++..++. +++.-..+....
T Consensus 151 ~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 151 TLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 5999999999876431 1111111267777766665554332 37888877663 333222122112
Q ss_pred eeeeeecCCCEEEEecc---C-CeEEEEEcCCC---eEEEee--ccCCcccccceeecCCCEEEEEec----CCeEEEEE
Q 003331 562 CQPVVDAPRQLIWCGSH---D-HNLYALDFRNY---RCVYKL--PCGGSIFGSPAIDEVHDVLYVAST----SGRLTAIS 628 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~---~-g~l~~~d~~tg---~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~----~g~l~~~~ 628 (829)
.....+.++..+++.+. + ..++.+|..++ ...|+. ......... +...++.+|+-|. ++.|+.++
T Consensus 230 ~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v~~~~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 230 VSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--VDHHGDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--EEEETTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE--EEccCCEEEEeeCCCCCCcEEEEec
Confidence 33344556677666432 2 45888888775 222222 111111111 2222577887664 36788888
Q ss_pred ccCCCceEEEeecc--CCcceeeeeeeecCCEEEEEeeCC---eEEEEcCC-CCEEEEeecCCceeecCcccccCCCeEE
Q 003331 629 VKALPFHTLWLHEL--EVPAFASLCITSANRHVICCLVDG---HVVALDSS-GSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 629 ~~~~~g~~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~-g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
+++..- ..|.... ......-..+...++.+++....+ .|.+++.+ +.......................+.++
T Consensus 308 l~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 308 LADPSP-AEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp TTSTSG-GGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred cccccc-ccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 876221 1233111 111111112223355555544332 45667744 5555554443221101111112234555
Q ss_pred EEee----CCeEEEEeCCCCcEE
Q 003331 703 ICSR----NGSIYSFEQESGNLL 721 (829)
Q Consensus 703 ~~t~----~g~l~~~d~~tG~~~ 721 (829)
+... -+.+|.+|..+|+..
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEeCCCCCCEEEEEECCCCCEE
Confidence 5432 257999999999873
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.35 Score=31.81 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 506 SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 506 g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
|+++..+..+.....+..+.+++..+++++.|+.|..||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 345566777766667888888889999999999999987
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.3 Score=49.07 Aligned_cols=149 Identities=9% Similarity=0.047 Sum_probs=86.9
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee--eeeeeeecCCC--EEEEeccCCeEEEEEcCC-CeEEEeecc
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV--KCQPVVDAPRQ--LIWCGSHDHNLYALDFRN-YRCVYKLPC 598 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~--~i~~gs~~g~l~~~d~~t-g~~~w~~~~ 598 (829)
+..+.+.+++++.++.+..+|.+.+.+......+... .+..+..+... ++++|+--+.|+.|++.- ..+. ....
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~G 173 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKG 173 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecc
Confidence 3345567888888999999998888777655444322 22222322333 355567778888888752 1222 2223
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-ceeeeeeeecCCEEEEEeeCCeEEEEcCCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-AFASLCITSANRHVICCLVDGHVVALDSSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~ 677 (829)
+....-++....++.++...+.|..+..|++++ ++..--...+.+ .....++. .+.++.++.|-+..+|+.+|+.
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s--~~~~~~~~fgHsaRvw~~~~~--~n~i~t~gedctcrvW~~~~~~ 249 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS--REVLGCTGFGHSARVWACCFL--PNRIITVGEDCTCRVWGVNGTQ 249 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeeccc--ccccCcccccccceeEEEEec--cceeEEeccceEEEEEecccce
Confidence 334444566666678899999999999999887 432210000000 01122222 3377888777777777544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 829 | ||||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 6e-31 | ||
| 3dhv_A | 512 | Crystal Structure Of Dlta Protein In Complex With D | 5e-25 | ||
| 3fcc_A | 512 | Crystal Structure Of Dlta Protein In Complex With A | 6e-25 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 7e-25 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-24 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 9e-22 | ||
| 4dg8_A | 620 | Structure Of Pa1221, An Nrps Protein Containing Ade | 1e-19 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 1e-17 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 4e-16 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-15 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 3e-15 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 4e-15 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 4e-15 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 4e-15 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 4e-15 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-14 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 8e-14 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 5e-12 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 1e-11 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 5e-11 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 6e-11 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-10 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 1e-09 | ||
| 3ite_A | 562 | The Third Adenylation Domain Of The Fungal Sidn Non | 2e-09 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 4e-09 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 1e-08 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-08 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 1e-08 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 2e-08 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 4e-08 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 1e-07 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 1e-07 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 4e-07 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 9e-07 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 2e-06 | ||
| 3hxj_A | 330 | Crystal Structure Of Pyrrolo-quinoline Quinone (pqq | 3e-06 | ||
| 3hxj_A | 330 | Crystal Structure Of Pyrrolo-quinoline Quinone (pqq | 5e-04 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-06 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-05 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 8e-04 |
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine Adenylate Length = 512 | Back alignment and structure |
|
| >pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And Magnesium Length = 512 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing Adenylation And Pcp Domains Length = 620 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh) From Methanococcus Maripaludis, Northeast Structural Genomics Consortium Target Mrr86 Length = 330 | Back alignment and structure |
|
| >pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh) From Methanococcus Maripaludis, Northeast Structural Genomics Consortium Target Mrr86 Length = 330 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 207 bits (529), Expect = 1e-60
Identities = 65/362 (17%), Positives = 128/362 (35%), Gaps = 48/362 (13%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
+ W+ + + +D+SP++ + +++GS + + A SV W K IEC
Sbjct: 10 KIKWEFLIGNSIDSSPILA---KNGTIYLGSSNKN-LYAINTDGSVKWFFKSGEIIECRP 65
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
++ D + G K+Y ++ G W F T + + +++ S D +L
Sbjct: 66 SIGKD-GTIYFGS--DKVYAIN-PDGTEKWRFDTKKAIVSDFTIFE--DILYVTSMDGHL 119
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YA++ + ++ +I+ +P + E +YV S L AI+ W +
Sbjct: 120 YAIN-TDGTEKWRFKTKKAIYATPIVSE-DGTIYVGSNDNYLYAINPDG---TEKWRFKT 174
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
++ I V A++ G+ W G P S +
Sbjct: 175 NDAITSAASIGKDGTIYFG---SDKVYAINPDGTEKWNFYAGYWTVTRPAISED--GTIY 229
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
+ S +G +Y+ G W + G I +S I + + G
Sbjct: 230 VTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN------------TDTIYFGSYDGH 276
Query: 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIAL 821
++ + + G E E I ++PV+ G ++ G R+ Y +
Sbjct: 277 LYAI----NPDGTE----------KWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFN 322
Query: 822 ET 823
Sbjct: 323 LE 324
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 1e-50
Identities = 59/314 (18%), Positives = 112/314 (35%), Gaps = 36/314 (11%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
W ++ P + D ++ GS + A + W + I
Sbjct: 50 SVKWFFKSGEIIECRPSI---GKDGTIYFGSDK---VYAINPDGTEKWRFDTKKAIVSDF 103
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
+ D + V G +Y ++ G W F+T + P+V I+ GS+D+ L
Sbjct: 104 TIFEDI--LYVTSMDGHLYAIN-TDGTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYL 159
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YA++ + ++ +I + +I + +Y S ++ AI+ W
Sbjct: 160 YAIN-PDGTEKWRFKTNDAITSAASIGK-DGTIYFGS--DKVYAINPDG---TEKWNFYA 212
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702
I S + + +DGH+ A++ G+ WR +TG I + P +
Sbjct: 213 GYWTVTRPAI-SEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNT--DTIY 269
Query: 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762
S +G +Y+ G W + G I A+ IDE + + T +G
Sbjct: 270 FGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE------------NGTIYFGTRNGK 316
Query: 763 IHILRVNLDVTGKE 776
+ L ++
Sbjct: 317 FYALF---NLEHHH 327
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 3e-38
Identities = 49/262 (18%), Positives = 87/262 (33%), Gaps = 22/262 (8%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSA 522
E W+ + + + + + L+V S + + W K + I +
Sbjct: 88 TEKWRFDTKKAIVSDFTI----FEDILYVTSMDGHLYAINTDGT-EKWRFKTKKAIYATP 142
Query: 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNL 582
V D + VG +Y ++ G W F+T + + + + +
Sbjct: 143 IVSED-GTIYVGSNDNYLYAIN-PDGTEKWRFKTNDAITSAASIGKDGTIYFGS---DKV 197
Query: 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642
YA++ + G PAI E +YV S G L AI+ W +
Sbjct: 198 YAINPDG-TEKWNFYAGYWTVTRPAISE-DGTIYVTSLDGHLYAINPDG---TEKWRFKT 252
Query: 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS--Q 700
+S I + DGH+ A++ G+ W TG I A P +
Sbjct: 253 GKRIESSPVI-GNTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATP----VIDENGT 307
Query: 701 VLICSRNGSIYSFEQESGNLLW 722
+ +RNG Y+ +
Sbjct: 308 IYFGTRNGKFYALFNLEHHHHH 329
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 31/152 (20%)
Query: 668 VVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727
+ + I W G I + P A + + S N ++Y+ G++ W + G
Sbjct: 2 LRGGVNDCKIKWEFLIGNSIDSSPI--LAKNGTIYLGSSNKNLYAINT-DGSVKWFFKSG 58
Query: 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEF 787
+ I I + D + S ++ ++ G E D
Sbjct: 59 EIIECRPSIGK------------DGTIYF--GSDKVYA----INPDGTEKWRFD------ 94
Query: 788 AKLELQGDIFSSPVMIGGRVFVGCRDDYIYCI 819
+ I S + ++V D ++Y I
Sbjct: 95 ----TKKAIVSDFTIFEDILYVTSMDGHLYAI 122
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 3e-53
Identities = 87/358 (24%), Positives = 161/358 (44%), Gaps = 57/358 (15%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
L+ ++ GE + ++ ++N YG TE + T LP
Sbjct: 713 DAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPD 772
Query: 71 ILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----------GEIYAGGLCLSNGYF- 118
++ S+PIG PISN + +L +E GE+ G+ +S GY
Sbjct: 773 -----SISSLPIGKPISNASVYIL--------NEQSQLQPFGAVGELCISGMGVSKGYVN 819
Query: 119 -SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174
++ T F+ + + G Y RTGD AR + G + + GR D +K
Sbjct: 820 RADLTKEKFIENPFKP-------------GETLY-RTGDLARWLPDGTIEYAGRIDDQVK 865
Query: 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKS 234
I G R+ LEEIE L+ +P V D VV+ +H+ + A++V + + ++ + +K+
Sbjct: 866 IRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAED-----VKA 920
Query: 235 WVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVI 294
+ +LP M+P F F+D LP+T++GKV+ L ++ + + + + I
Sbjct: 921 HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQI 980
Query: 295 RKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH------NLGIDMRLIYNFPTPSKL 346
+ L +++ HD+FF +GG+++ A A + + ++L++ PT + +
Sbjct: 981 ---WSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGI 1035
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 1e-48
Identities = 82/270 (30%), Positives = 121/270 (44%), Gaps = 47/270 (17%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+ GEVLP+S+ + + FP I N YG TE + T + +S
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITND----VISRS 315
Query: 78 KSVPIGLPISNCDI-VLVESDTVKPDE----------GEIYAGGLCLSNGYF--SEST-- 122
+S+P+G + +I ++ DE GEI G +S GY E T
Sbjct: 316 ESLPVGFAKPDMNIFIM--------DEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEK 367
Query: 123 -FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMA 181
F E G Y RTGD A IQ G + GR D IK++G RM
Sbjct: 368 AFFSHE----------------GQWAY-RTGD-AGFIQDGQIFCQGRLDFQIKLHGYRME 409
Query: 182 LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKL 240
LEEIE +R V V+ ++ G + L+A IV +E + E L+S IK +++ L
Sbjct: 410 LEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL 469
Query: 241 PLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
P MIP +F++ D + MT++GK+D +
Sbjct: 470 PAYMIPRKFIYQDHIQMTANGKIDRKRIGE 499
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-48
Identities = 76/360 (21%), Positives = 130/360 (36%), Gaps = 64/360 (17%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
+ L+ L+ G++L + P + ++N YG TE +
Sbjct: 269 DLDPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328
Query: 71 ILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE-----------GEIYAGGLCLSNGYF 118
+PIG I+ + +L DE GEI A G L+ GY
Sbjct: 329 -----EEDDIPIGKAIAGTAVLLL--------DEHGQEIAEPDRAGEIVAFGAGLAQGYR 375
Query: 119 --SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173
+ T F+ Y + Y RTGD AR + G L F+GR D +
Sbjct: 376 NDAARTRASFVELPYR------------GRLLRAY-RTGDRARYDEQGRLRFIGRGDGQV 422
Query: 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIK 233
K+NG R+ L +E R P ++D A++ + G +L A+ + +
Sbjct: 423 KLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKAD----------ASP 472
Query: 234 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQV 293
+ +LP P+ V +++LP+T+ GK+D A+L + +
Sbjct: 473 QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLR-RLEEPLERCASALDPDQRGCAQ 531
Query: 294 IRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA-----HNLGID--MRLIYNFPTPSKL 346
+ + L E +FF GGNS+ A + G + + + +
Sbjct: 532 L---WSELLGCEVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQF 588
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-48
Identities = 69/274 (25%), Positives = 110/274 (40%), Gaps = 50/274 (18%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+L GE L +S + + FP+ I+N YG TE + + + R +
Sbjct: 264 PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM----VDNY 319
Query: 78 KSVPIGLPISNCDI-VLVESDTVKPDE----------GEIYAGGLCLSNGYF--SEST-- 122
+PIG P + ++ DE GEI G +S GY E T
Sbjct: 320 TRLPIGYPKPDSPTYII--------DEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAE 371
Query: 123 -FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMA 181
F + G Y TGD + L++ GR D IK G R+
Sbjct: 372 AFFTFK----------------GQPAY-HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIE 414
Query: 182 LEEIEHTLRGHPDVVDTAVVSHK-HQGELVILVAFIVLKEKKTSS----EIFLSSIKSWV 236
LE++ L P V V + ++ L+A+IV+K+ +IK+ V
Sbjct: 415 LEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASV 474
Query: 237 SSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
+ M+P++F++ DSLP+T +GK+D +L
Sbjct: 475 KDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLIN 508
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-47
Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 47/270 (17%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
++K + GEVLP + + + FP +I+N YG TE + T +
Sbjct: 261 PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEV----LDQY 316
Query: 78 KSVPIGLPISNCDI-VLVESDTVKPDE----------GEIYAGGLCLSNGYF--SEST-- 122
KS+P+G S+C + ++ E GEI G +S GY E T
Sbjct: 317 KSLPVGYCKSDCRLLIM--------KEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK 368
Query: 123 -FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMA 181
F + + Y +TGD A +++G L + GR D IK++G RM
Sbjct: 369 AFTMIDGERA----------------Y-KTGD-AGYVENGLLFYNGRLDFQIKLHGYRME 410
Query: 182 LEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSS-IKSWVSSKL 240
LEEIEH LR V +V K + L+A +V E E L+S IK ++ +L
Sbjct: 411 LEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERL 470
Query: 241 PLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
P MIP +F++ S+PMT +GKVD L +
Sbjct: 471 PNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 8e-47
Identities = 79/281 (28%), Positives = 128/281 (45%), Gaps = 52/281 (18%)
Query: 6 PALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDC 65
P + S++ L+ +G +++K ++ +N YG TE + T +
Sbjct: 281 PTYVVHLDPERILSIQTLITAGSATS---PSLVNKWKEKVTYINAYGPTETTICATTWVA 337
Query: 66 KRLPSILEMSTLKSVPIGLPISNCDI-VLVESDTVKPDE----------GEIYAGGLCLS 114
+ + SVPIG PI N I ++ DE GE+ GG L+
Sbjct: 338 TK------ETIGHSVPIGAPIQNTQIYIV--------DENLQLKSVGEAGELCIGGEGLA 383
Query: 115 NGYF--SEST---FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169
GY+ E T F+ + +V G + Y +TGD AR + G++ +LGR
Sbjct: 384 RGYWKRPELTSQKFVDNPFVP-------------GEKLY-KTGDQARWLSDGNIEYLGRI 429
Query: 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL 229
D +KI G R+ LEE+E L H + +TAV HK E L A+ V ++ +
Sbjct: 430 DNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ--- 486
Query: 230 SSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270
++ + S +LP MIP+ F+ +D +P+TS+GK+D L
Sbjct: 487 --LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 525
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 1e-42
Identities = 58/272 (21%), Positives = 104/272 (38%), Gaps = 45/272 (16%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
L L + GE + I S ++++N+YG TEV+ C+
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDS-------- 344
Query: 78 KSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYF--SEST-FMPSEYVK 130
+ IG P+ + ++ + + GE+ G ++NGY ++ F
Sbjct: 345 DTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDIN--- 401
Query: 131 LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLR 190
G + Y RTGD R ++FLGRKD +K+ GQR+ L E+ +R
Sbjct: 402 -------------GRKMY-RTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR 447
Query: 191 GHPDVVDTAVVSHKHQGEL--VILVAFIV---------LKEKKTSSEIFLSSIKSWVSSK 239
V + LV+F+ L+ + + +S++
Sbjct: 448 SLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQT 507
Query: 240 LPLAMIPNRFVFMDSLPM-TSSGKVDYASLSA 270
LP M+P+ + + +P+ +S K D +L
Sbjct: 508 LPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 147 bits (371), Expect = 1e-38
Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 32/302 (10%)
Query: 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH 580
S L + + + V G ++ + TG I WT + ++ V+ P +D
Sbjct: 3 STVTLPE-TLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEP--AFLPDPNDG 59
Query: 581 NLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638
+LY L +N + KLP + SP +LY+ I +
Sbjct: 60 SLYTLGSKNNEGLTKLPFTIPELVQASPCRSS-DGILYMGKKQDIWYVIDLLTG--EKQQ 116
Query: 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFAL 697
S + + + + D+ + + W + P
Sbjct: 117 TLSSAFADSLS----PSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDY 172
Query: 698 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757
+ + +G + + + ESG++LW + P+ A + +++ I
Sbjct: 173 KMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQRE---------GLRKVMHIN 223
Query: 758 TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIY 817
+ ++ L G+ + K + + ++VG +Y
Sbjct: 224 VAVETLRYLTFMSGEVGRITKWKYPF----------PKETEAKSKLTPTLYVGKYSTSLY 273
Query: 818 CI 819
Sbjct: 274 AS 275
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 2e-21
Identities = 38/308 (12%), Positives = 82/308 (26%), Gaps = 29/308 (9%)
Query: 458 KRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR 517
K + V ASP SD L++G + D +
Sbjct: 67 KNNEGLTKLPFTIPELVQASPCRS---SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA 123
Query: 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQ-LIWCG 576
S + S + +G + I D T ++ W P D + +
Sbjct: 124 DSLSPST----SLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVS 179
Query: 577 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPF 634
+ D + +D + ++ + + + V+++ L ++ +
Sbjct: 180 NGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEV 239
Query: 635 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS---SGSIIWRCRTGGPIFAGP 691
+ + P + + + A S G + + P+ GP
Sbjct: 240 GRITKWKYPFPKETEA-KSKLTPTLYVGKYSTSLYASPSMVHEGVAVVPRGSTLPLLEGP 298
Query: 692 CTSFALPSQVLICSRNGSI-------------YSFEQESGNLLWEYSVGDPITASAYIDE 738
T S ++ + L+ + P++AS + E
Sbjct: 299 QTDGVTIGDKGESVITPSTDVKFDPGLKSKNKLNYLRNYWLLIGHHET--PLSASTKMLE 356
Query: 739 HLQLKLES 746
L
Sbjct: 357 RFPNNLPK 364
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 1e-19
Identities = 32/231 (13%), Positives = 63/231 (27%), Gaps = 45/231 (19%)
Query: 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSA 655
G S + + E +L+V++ G L A+S + T W + + +
Sbjct: 1 GSS---TVTLPE--TLLFVSTLDGSLHAVSKR-----TGSIKWTLKEDPVLQVPTHV--E 48
Query: 656 NRHVICCLVDGHVVALDS---SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712
+ DG + L S G + A PC S + + + Y
Sbjct: 49 EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSS--DGILYMGKKQDIWYV 106
Query: 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772
+ +G S + S L+ + + +I +
Sbjct: 107 IDLLTGEKQQTLSSAFADSLSPS---------------TSLLYLGRTEYTITMYDTK--- 148
Query: 773 TGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
T + + + V FV D + + E+
Sbjct: 149 TREL-------RWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 7e-35
Identities = 61/385 (15%), Positives = 130/385 (33%), Gaps = 65/385 (16%)
Query: 462 IQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG 516
W + S + P + +D ++ + +A +W + L
Sbjct: 28 PTTAWSTSVGSGIGNFYSNLHPAL----ADNVVYAADRAGLVKALNADDGKEIWSVSLAE 83
Query: 517 RIEC--------SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA 568
+ S V V +G K ++Y L+ G + W + GE +PVV
Sbjct: 84 KDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS- 142
Query: 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLT 625
L+ + + L AL+ + + + S+ G A V +GR++
Sbjct: 143 -DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVS 201
Query: 626 AISVKALPFHTLWLHELEVPAFAS-----LCITS----ANRHVICCLVDGHVVALD-SSG 675
A+ ++ +W + ++ + + N V +G++ ALD SG
Sbjct: 202 AVLMEQG--QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259
Query: 676 SIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY 735
I+W+ G +++ + +N + + + G LW S ++
Sbjct: 260 QIMWKRELGS--VNDFIVDG---NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314
Query: 736 IDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795
+ + + + S G +H + V G+ A+ ++
Sbjct: 315 V------------LYNGNLVVGDSEGYLHWINVE---DGRFV----------AQQKVDSS 349
Query: 796 -IFSSPVMIGGRVFVGCRDDYIYCI 819
+ PV G++ + +D +Y I
Sbjct: 350 GFQTEPVAADGKLLIQAKDGTVYSI 374
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-26
Identities = 45/269 (16%), Positives = 106/269 (39%), Gaps = 32/269 (11%)
Query: 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG---RIE 519
W+ + + P+V SD + + + + + + +V W + L+ +
Sbjct: 124 TVAWQTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179
Query: 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----------CGEVKCQPVVDA 568
+A F VVG G++ + G + W + +V PVV
Sbjct: 180 GESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV- 238
Query: 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628
+++ +++ NL ALD R+ + ++K G +D + +Y+ + R+ A++
Sbjct: 239 -NGVVFALAYNGNLTALDLRSGQIMWKRELGS--VNDFIVDG--NRIYLVDQNDRVMALT 293
Query: 629 VKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-P 686
+ TLW + + N +++ +G++ ++ G + + +
Sbjct: 294 IDGG--VTLWTQSDLLHRLLT-SPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG 350
Query: 687 IFAGPCTSFALPSQVLICSRNGSIYSFEQ 715
P A ++LI +++G++YS +
Sbjct: 351 FQTEP---VAADGKLLIQAKDGTVYSITR 376
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-23
Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 30/230 (13%)
Query: 605 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLC--------ITSAN 656
PA+ + +V+Y A +G + A++ +W L +T +
Sbjct: 48 HPALAD--NVVYAADRAGLVKALNADD--GKEIWSVSLAEKDGWFSKEPALLSGGVTVSG 103
Query: 657 RHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715
HV V AL+ S G++ W+ + G + P S VLI + NG + + +
Sbjct: 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNE 160
Query: 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLES-CLSIDRLVCICTSSGSIHILRVNLDVTG 774
G + W ++ P L L+ ES + + +G + + + G
Sbjct: 161 ADGAVKWTVNLDMPS---------LSLRGESAPTTAFGAAVVGGDNGRVSAVLME---QG 208
Query: 775 KEN-QSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
+ Q + +++ D+ ++PV++ G VF + + + L +
Sbjct: 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 27/183 (14%), Positives = 65/183 (35%), Gaps = 19/183 (10%)
Query: 448 VNWSLEVPRNKRGFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSS 507
+ W + + + S VD +P+VV + +F +++ D +
Sbjct: 210 MIWQQRISQATGSTEIDRL-----SDVDTTPVVV----NGVVFALAYNGNLTALDLRSGQ 260
Query: 508 VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVV 566
++W+ +L + D +++ + ++ L G WT + PV+
Sbjct: 261 IMWKRELGS----VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL 316
Query: 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-IFGSPAIDEVHDVLYVASTSGRLT 625
+ G + L+ ++ + R V + S P + L + + G +
Sbjct: 317 YN--GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAAD--GKLLIQAKDGTVY 372
Query: 626 AIS 628
+I+
Sbjct: 373 SIT 375
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 22/154 (14%)
Query: 674 SGSIIWRCRTGGPIFAGPCTSFALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDP 729
+ + W G I G S P+ V R G + + + G +W S+ +
Sbjct: 27 TPTTAWSTSVGSGI--GNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEK 84
Query: 730 ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK 789
+ L + V I + ++ L + G
Sbjct: 85 DGWFSKEPALLSGGV---TVSGGHVYIGSEKAQVYALNTS---DGTVAWQT--------- 129
Query: 790 LELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
++ G+ S PV+ G V + + + +
Sbjct: 130 -KVAGEALSRPVVSDGLVLIHTSNGQLQALNEAD 162
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 773
Q + W SVG I + + L D +V +G + L +
Sbjct: 24 NQFTPTTAWSTSVGSGIG-----NFYSNL---HPALADNVVYAADRAGLVKALNAD---D 72
Query: 774 GKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823
GKE S ++ + + + GG V++G +Y +
Sbjct: 73 GKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSD 122
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 1e-24
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 36/252 (14%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
++++ +GE LP + + + F IL+ GSTE+ L
Sbjct: 300 VAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEML-----------HIFLSNRAG 347
Query: 78 KSVP--IGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVK-L 131
G P+ +I L + V E G++Y G + Y++ +
Sbjct: 348 AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWN----NREKSRATF 403
Query: 132 HNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191
+ R+GD R+ +G V+ GR D +K++GQ ++ E+E L
Sbjct: 404 LGE-------------WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450
Query: 192 HPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251
H V++ AVV H LV AF+VLK + SEI +K++V +L P VF
Sbjct: 451 HDAVLEAAVVGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVF 509
Query: 252 MDSLPMTSSGKV 263
+D LP T++GK+
Sbjct: 510 VDDLPKTATGKI 521
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 4e-23
Identities = 84/354 (23%), Positives = 144/354 (40%), Gaps = 57/354 (16%)
Query: 18 SSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
+SLKLL + G L + I +++ + ++G E + T D + + T
Sbjct: 302 ASLKLLQVGGARLSATLAARIPAEI--GCQLQQVFGMAEGLVNYTRLD---DSAEKIIHT 356
Query: 77 LKSVPIGLPISNCD---IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
G P+ D + E + + E G + G GY+ P H
Sbjct: 357 -----QGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYK----SPQ-----H 402
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTL 189
N S + + ++ +GD G + GR KD+ IN G+++A EEIE+ L
Sbjct: 403 NAS------AFDANGFYCSGDLISIDPEGYITVQGREKDQ---INRGGEKIAAEEIENLL 453
Query: 190 RGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM--I 245
HP V+ A+VS + GE A++V+KE + ++ + ++ + +A +
Sbjct: 454 LRHPAVIYAALVSMEDELMGEKS--CAYLVVKEPLRAVQV-----RRFLREQ-GIAEFKL 505
Query: 246 PNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVE 305
P+R +DSLP+T+ GKVD L + SA + + L +VI +
Sbjct: 506 PDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLDE---SD 562
Query: 306 EVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALLEKK 354
E DN G +S+ +A ID ++ PT LL ++
Sbjct: 563 EPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW-WKLLSRE 615
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 6e-23
Identities = 55/260 (21%), Positives = 98/260 (37%), Gaps = 50/260 (19%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGD--CTYFDCKRLPSILEMS 75
S+L + G L + + ++K F I YG TE + T + ++
Sbjct: 307 SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAV---- 362
Query: 76 TLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SESTFMPS 126
G + + +V+ DT + ++ GE+ G + +GY + +
Sbjct: 363 -------GKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALI--- 412
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
G + +GD A + + R IK G ++A E+E
Sbjct: 413 --------------DKDG---WLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455
Query: 187 HTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLA 243
L HP++ D V GEL A +VL+ KT +E I +V+S++
Sbjct: 456 SILLQHPNIFDAGVAGLPDDDAGELP--AAVVVLEHGKTMTE---KEIVDYVASQVTTAK 510
Query: 244 MIPNRFVFMDSLPMTSSGKV 263
+ VF+D +P +GK+
Sbjct: 511 KLRGGVVFVDEVPKGLTGKL 530
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-22
Identities = 50/260 (19%), Positives = 90/260 (34%), Gaps = 50/260 (19%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSG--DCTYFDCKRLPSILEMS 75
S+L + G L + + +++ F + YG TE + T + +
Sbjct: 309 SNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGAS---- 364
Query: 76 TLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SESTFMPS 126
G + +++ DT + P+ GE+ G L GY ++
Sbjct: 365 -------GKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDE- 416
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
G + TGD + + R IK G ++ E+E
Sbjct: 417 ----------------EG---WLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 187 HTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLA 243
L HP + D V GEL A +VL+ K +E + +V+S++
Sbjct: 458 SVLLQHPSIFDAGVAGVPDPVAGELP--GAVVVLESGKNMTE---KEVMDYVASQVSNAK 512
Query: 244 MIPNRFVFMDSLPMTSSGKV 263
+ F+D +P +GK+
Sbjct: 513 RLRGGVRFVDEVPKGLTGKI 532
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 5e-22
Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 50/262 (19%)
Query: 18 SSLKLLV-----LSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL 72
SSL+++ L E+ D + FP + YG TE L
Sbjct: 297 SSLRMIKSGGAPLGKELE-----DTVRAKFPQARLGQGYGMTEAGPVLAMC----LAFAK 347
Query: 73 EMSTLKSVPIGLPISNCDIVLVESDTVK---PDE-GEIYAGGLCLSNGYF-----SESTF 123
E +K G + N ++ +V+ +T ++ GEI G + GY + T
Sbjct: 348 EPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTI 407
Query: 124 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
G + TGD +L + R IK G ++A
Sbjct: 408 -----------------DKEG---WLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPA 447
Query: 184 EIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
E+E L HP++ D AVV + GE+ VAF+V EK ++E IK ++S ++
Sbjct: 448 ELEALLIAHPEISDAAVVGLKDEDAGEVP--VAFVVKSEKSQATE---DEIKQYISKQVI 502
Query: 242 LAMIPNRFVFMDSLPMTSSGKV 263
R F++++P SGK+
Sbjct: 503 FYKRIKRVFFIEAIPKAPSGKI 524
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 6e-21
Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 47/259 (18%)
Query: 18 SSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SSL++L + G + + ++ ++G E + T D P + ++T
Sbjct: 298 SSLQVLQVGGAKFSAEAARRVKAVF--GCTLQQVFGMAEGLVNYTRLD---DPEEIIVNT 352
Query: 77 LKSVPIGLPIS-NCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
G P+S + + + VKP E G + G GY+ H
Sbjct: 353 -----QGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYK----AEE-----H 398
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTL 189
N + S ++RTGD R + G +V GR KD+ IN G+++A EE+E+ L
Sbjct: 399 NAA------SFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQ---INRGGEKVAAEEVENHL 449
Query: 190 RGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM--I 245
HP V D A+VS + GE FI+ +++ + +K+++ + LA I
Sbjct: 450 LAHPAVHDAAMVSMPDQFLGERS--CVFIIPRDEAPKAA----ELKAFLRER-GLAAYKI 502
Query: 246 PNRFVFMDSLPMTSSGKVD 264
P+R F++S P T GKV
Sbjct: 503 PDRVEFVESFPQTGVGKVS 521
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 3e-20
Identities = 60/255 (23%), Positives = 95/255 (37%), Gaps = 34/255 (13%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
L+ V GE L + + I YG TE + L
Sbjct: 322 PHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTE--------------TGLTCMVS 366
Query: 78 KSVPI-----GLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
K++ I G S D+ +++ G G + + S Y
Sbjct: 367 KTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE--GDIGIRVKPIRPIGIF-SGY---V 420
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
+N + G ++ GD + + G F+GR D I +G R+ E+E+ L H
Sbjct: 421 DNPDKTAANIRGD--FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEH 478
Query: 193 PDVVDTAVVS--HKHQGELVILVAFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAMIPNR 248
P VV+TAV+S +GE+V AF+VL E ++ V S P +
Sbjct: 479 PAVVETAVISSPDPVRGEVV--KAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRK 536
Query: 249 FVFMDSLPMTSSGKV 263
F+ +LP T +GK+
Sbjct: 537 IEFVLNLPKTVTGKI 551
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 6e-20
Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 43/257 (16%)
Query: 18 SSLKLLVLSGEVLPLS-MWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
SLKLL + G P S + L N + ++G E + T D +T
Sbjct: 307 QSLKLLQVGGASFPESLARQVPEVL--NCKLQQVFGMAEGLVNYTRLD---DSDEQIFTT 361
Query: 77 LKSVPIGLPISNCD---IVLVESDTVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLH 132
G PIS+ D IV + V E G + G GY+ P H
Sbjct: 362 -----QGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQ----SPE-----H 407
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR-KDRTIKIN--GQRMALEEIEHTL 189
N+ Y+ +GD +R G+L +GR KD+ IN G+++A EEIE +
Sbjct: 408 NSQ------VFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQ---INRGGEKIASEEIEKLI 458
Query: 190 RGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247
HP+V+ A+V+ + GE AFIV + + + + + + +P+
Sbjct: 459 LLHPEVMHAALVAIVDEQFGEKS--CAFIVSRNPELKAV---VLRRHLMELGIAQYKLPD 513
Query: 248 RFVFMDSLPMTSSGKVD 264
+ ++SLP+T+ GKVD
Sbjct: 514 QIKLIESLPLTAVGKVD 530
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-19
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 44/259 (16%)
Query: 18 SSLKLLV-----LSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSIL 72
SS++++ L E+ D ++ FPN + YG TE L
Sbjct: 344 SSIRVVKSGAAPLGKELE-----DAVNAKFPNAKLGQGYGMTEAGPVLAM----SLGFAK 394
Query: 73 EMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFS--ESTFMPS 126
E +KS G + N ++ +V+ DT GEI G + GY + +T
Sbjct: 395 EPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAAT---- 450
Query: 127 EYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIE 186
+I G + TGD +L + R IK G ++A E+E
Sbjct: 451 ------AETI----DKDG---WLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELE 497
Query: 187 HTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244
L GHPD+ D AVV+ + GE+ VAF+V + SE +K +VS ++
Sbjct: 498 ALLIGHPDITDVAVVAMKEEAAGEVP--VAFVVKSKDSELSE---DDVKQFVSKQVVFYK 552
Query: 245 IPNRFVFMDSLPMTSSGKV 263
N+ F +S+P SGK+
Sbjct: 553 RINKVFFTESIPKAPSGKI 571
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 7e-19
Identities = 57/258 (22%), Positives = 99/258 (38%), Gaps = 48/258 (18%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY-FDCKRLPSILEMST 76
++L + L S ++L YG TE + + + +D R+P
Sbjct: 268 GHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPYDGDRVPG------ 320
Query: 77 LKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYF-----SESTFMPSE 127
+V G + + + +T + + G I G + GY+ ++S F
Sbjct: 321 --AV--GPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEF---- 372
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
G +F TGD + + G + LGR + G + +EIE
Sbjct: 373 -------------RDDG---FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIES 416
Query: 188 TLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245
+ P VV++AV V H GE V A +V + T E + + + +L +
Sbjct: 417 EIDAMPGVVESAVIGVPHADFGEGV--TAVVVRDKGATIDE---AQVLHGLDGQLAKFKM 471
Query: 246 PNRFVFMDSLPMTSSGKV 263
P + +F+D LP + GKV
Sbjct: 472 PKKVIFVDDLPRNTMGKV 489
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 8e-19
Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 58/265 (21%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTY-FDCKRLPSILEMST 76
+ +LLV LP+ + I+ ++ YG TE + + D +
Sbjct: 272 AGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRADGEPRAG------ 324
Query: 77 LKSVPIGLPISNCDIVLVESDT--VKPDE----GEIYAGGLCLSNGYFSESTFMPSEYVK 130
+V G+P+ ++ LVE D + + GEI G L Y + P
Sbjct: 325 --TV--GVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLN----RPDA--- 373
Query: 131 LHNNSICNCSVSCGSQT--------YFRTGDFARRIQSGDLVFLGR--KDRTIKINGQRM 180
T +FRTGD A R G + +GR D IK G ++
Sbjct: 374 ----------------TAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATD-LIKSGGYKI 416
Query: 181 ALEEIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS 238
EIE+ L HP+V + AV GE + VA+IV + ++ L ++ V++
Sbjct: 417 GAGEIENALLEHPEVREAAVTGEPDPDLGERI--VAWIVPADP--AAPPALGTLADHVAA 472
Query: 239 KLPLAMIPNRFVFMDSLPMTSSGKV 263
+L P ++D++P GK+
Sbjct: 473 RLAPHKRPRVVRYLDAVPRNDMGKI 497
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 4e-18
Identities = 55/266 (20%), Positives = 90/266 (33%), Gaps = 65/266 (24%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKL-FPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
+ + G +P + +I NI ++ Y TE G T L S +
Sbjct: 284 PDFRYFITGGAPMPEA---LIKIYAAKNIEVVQGYALTESCGGGTL-----LLSEDALRK 335
Query: 77 LKSVPIGLPISNCDIVLVESD--TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
S G D+ + D + EGE+ L Y++ P
Sbjct: 336 AGS--AGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWN----RPEA------- 382
Query: 135 SICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE---- 183
T +FRTGD G L R I G E
Sbjct: 383 ------------TRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGG-----ENVYP 425
Query: 184 -EIEHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240
EIE + G P V + AV+ + GE+ A +V + + S + I + ++L
Sbjct: 426 AEIESVIIGVPGVSEVAVIGLPDEKWGEIA--AAIVVADQNEVSEQ----QIVEYCGTRL 479
Query: 241 PLAM--IPNRFVFMDSLPMTSSGKVD 264
A +P + +F +++P +GK+
Sbjct: 480 --ARYKLPKKVIFAEAIPRNPTGKIL 503
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 5e-18
Identities = 58/264 (21%), Positives = 101/264 (38%), Gaps = 61/264 (23%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
+SL+ + + + PN + +G +E SG T+ + P
Sbjct: 272 ASLRAVTGLDTPETI---ERFEATCPNATFWATFGQSETSGLSTFAPYRDRP-------- 320
Query: 78 KSVPIGLPISNCDIVLVESD--TVKPDE-GEIYAGGLCLSNGYFSESTFMPSEYVKLHNN 134
KS G P+ + +V+++ + P E GEI G + GY++ +
Sbjct: 321 KSA--GRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWN----NAAA------- 367
Query: 135 SICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGR---KDRTIKINGQRMALEE 184
T + TGD R G L + GR K+ IK G+ + E
Sbjct: 368 ------------TQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKE-LIKTGGENVYPAE 414
Query: 185 IEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 242
+E L+ HP + D V V E + A V K ++ + ++ +V+S +
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAI--KAVCVCKPGESIAA---DALAEFVASLI-- 467
Query: 243 AM--IPNRFVFMDSLPMTSSGKVD 264
A P VF+++LP + G +D
Sbjct: 468 ARYKKPKHVVFVEALPKDAKGAID 491
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 6e-18
Identities = 57/264 (21%), Positives = 103/264 (39%), Gaps = 53/264 (20%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
Q +H P +L+ ++L G L +M + + N+ I N +G TE + L +
Sbjct: 267 QQGLHEPYNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHA 324
Query: 71 ILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVK 130
+ + +G+P +N D+ + + GE+ G + NGY P++
Sbjct: 325 RPD-----T--VGMPSANVDVKIKNPNK--EGHGELMIKGANVMNGYL-----YPTDLTG 370
Query: 131 -LHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE-----E 184
N G YF TGD A G ++ R+ I G E +
Sbjct: 371 TFEN----------G---YFNTGDIAEIDHEGYVMIYDRRKDLIISGG-----ENIYPYQ 412
Query: 185 IEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPL 242
IE + P + D G++ + V + + +++ +++S L
Sbjct: 413 IETVAKQFPGISDAVCVGHPDDTWGQVP--KLYFVSESDISKAQL-----IAYLSKHL-- 463
Query: 243 AM--IPNRFVFMDSLPMTSSGKVD 264
A +P F +D+LP TS+GK+
Sbjct: 464 AKYKVPKHFEKVDTLPYTSTGKLQ 487
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 1e-17
Identities = 63/262 (24%), Positives = 100/262 (38%), Gaps = 42/262 (16%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLF------PNISILNLYGSTEVSGDCTYFDCKRLPSI 71
S LK+ + ++ + + KL P + ++G TE T RL
Sbjct: 296 SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLD-- 353
Query: 72 LEMSTLKSVPIGLPISNCDIVLVESDT---VKPDE-GEIYAGGLCLSNGYFS--ESTFMP 125
KS G+P+S+ ++ ++ + + E GEI G + GY+ +
Sbjct: 354 ------KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKEN--- 404
Query: 126 SEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEI 185
+FRTGD + G L F R IK G +A E+
Sbjct: 405 -------QECWWYDEKGRK---FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFEL 454
Query: 186 EHTLRGHPDVVDTAVVS--HKHQGELVILVAFIVLKEKKTSSEIFLS--SIKSWVSSKLP 241
E L H V+D AV+ + GE+ AFIVLK + + I WV ++
Sbjct: 455 EALLMKHEAVMDVAVIGKPDEEAGEVP--KAFIVLKPEYRGK---VDEEDIIEWVRERIS 509
Query: 242 LAMIPNRFVFMDSLPMTSSGKV 263
F++ LP T+SGK+
Sbjct: 510 GYKRVREVEFVEELPRTASGKL 531
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 3e-17
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 148 YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVS--HKH 205
Y+ TGD A + G L F+GR D IK +G ++ E+E L HP V++ A+
Sbjct: 453 YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPV 512
Query: 206 QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMDSLPMTSSGKV 263
+G+++ A IVL + T S+ + ++ V + P P F+ LP T SGK+
Sbjct: 513 RGQVI--KATIVLTKDYTPSDSLKNELQDHVKNVTAPYKY-PRIIEFVPELPKTISGKI 568
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 3e-17
Identities = 55/264 (20%), Positives = 94/264 (35%), Gaps = 60/264 (22%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SL+ + +G +P ++ + + + P +N+YG+TE + +
Sbjct: 272 DSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSLYMRQ-PKTGTE------ 323
Query: 78 KSVPIGLPISNCDIVLVESDT-----VKPDE-GEI-YAGGLCLSNGYFSESTFMPSEYVK 130
P ++ +V V E GE+ A GY + P
Sbjct: 324 -----MAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLN----QPQA--- 371
Query: 131 LHNNSICNCSVSCGSQT-------YFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
T ++RT D A G + LGR D I G+ +
Sbjct: 372 ----------------TAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPS 415
Query: 184 EIEHTLRGHPDVVDTAV--VSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLP 241
EIE L P V + V ++ + G+ V A +V + +T S ++ ++ S
Sbjct: 416 EIERVLGTAPGVTEVVVIGLADQRWGQSV--TACVVPRLGETLSA---DALDTFCRSSE- 469
Query: 242 LAM--IPNRFVFMDSLPMTSSGKV 263
LA P R+ +D LP + KV
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKV 493
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-16
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 17/130 (13%)
Query: 146 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
QTYF +GD ARR + G GR D + ++G R+ EIE L HP + +
Sbjct: 486 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEA 545
Query: 199 AVVSHKH----QGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLAMIPNRFVFMD 253
AVV H Q + A++ L + S + +++WV ++ PLA P+ + D
Sbjct: 546 AVVGIPHAIKGQA----IYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLA-TPDVLHWTD 600
Query: 254 SLPMTSSGKV 263
SLP T SGK+
Sbjct: 601 SLPKTRSGKI 610
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-16
Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 61/272 (22%)
Query: 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMST 76
+L+ LV+ G P S+ ++ + + YG TE S + +S
Sbjct: 292 LKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQ--NFVKSHLESLSE 347
Query: 77 LKSVPI----GLPISNCDIVLVESDT--VKPD---EGEIYAGGLCLSNGYF-----SEST 122
+ + + GLPI + + + + V D GE+ G ++ GY+ + S
Sbjct: 348 EEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 123 FMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT---IKINGQR 179
P G +FRTGD A + G ++ KDR IK G
Sbjct: 408 LTPD-----------------G---FFRTGDIAVWDEEG---YVEIKDRLKDLIKSGG-- 442
Query: 180 MALE-----EIEHTLRGHPDVVDTAVVSHKHQ--GELVILVAFIVLKEKKTSSEIFLSSI 232
E ++E+ L GHP V + AVV+ H E +A +V + +K + E
Sbjct: 443 ---EWISSVDLENALMGHPKVKEAAVVAIPHPKWQERP--LAVVVPRGEKPTPE---ELN 494
Query: 233 KSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVD 264
+ + + +P+ +VF + +P TS+GK
Sbjct: 495 EHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-15
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 146 QTYFR-------TGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDT 198
TY TGD A + + G + LGR D + ++G R++ EIE + P V +
Sbjct: 495 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAEC 554
Query: 199 AVVSHKH----QGELVILVAFIVLKEKKTSSEIFLSS-------IKSWVSSKL-PLAMIP 246
AVV Q + AF+VLK K + S + V + P A P
Sbjct: 555 AVVGFNDDLTGQA----VAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFA-AP 609
Query: 247 NRFVFMDSLPMTSSGKV 263
+ +D LP T SGK+
Sbjct: 610 KLIILVDDLPKTRSGKI 626
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-12
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 29/198 (14%)
Query: 80 VPIGLPISNCDIVLVESDTVKPD--EGEIYAGGLCLSNGYF-----SESTFMPSEYVKLH 132
V G PI I+ ++ GEI+ ++ GY+ + F
Sbjct: 374 VSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAF--------- 424
Query: 133 NNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192
I + S Y RTGD + +L GR I I G+ ++IE +L
Sbjct: 425 AGKIKD---DERSAIYLRTGDLGF-LHENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHS 480
Query: 193 PDVV---DTAVVSHKHQG-ELVILVAFIVLKE-KKTSSEIFLSSIKSWVSSKLPLAMIPN 247
P A + + + ++ + + + + + I V L +
Sbjct: 481 PLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLE--VH 538
Query: 248 RFVFMD--SLPMTSSGKV 263
V + ++P T+SGK+
Sbjct: 539 TIVLIPLKAMPHTTSGKI 556
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Length = 276 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 28/206 (13%), Positives = 64/206 (31%), Gaps = 13/206 (6%)
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590
+V G KI ++ T +I W + +C V I S+ + R+
Sbjct: 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMIT-RDG 65
Query: 591 RCV--YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVP 645
R + P G + + + + + ++ + +++K E
Sbjct: 66 RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHA 125
Query: 646 AFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP--SQVLI 703
F + +++ V + +G ++ + G P +S L ++
Sbjct: 126 QFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVA 181
Query: 704 CSRNGSIYSFEQESGNLLWEYSVGDP 729
C ES ++ + D
Sbjct: 182 CGDAHCFVQLNLESNRIVRRVNANDI 207
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 7e-06
Identities = 95/570 (16%), Positives = 172/570 (30%), Gaps = 160/570 (28%)
Query: 63 FDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNG-----Y 117
FDCK + +M KS+ L D +++ D G + LS
Sbjct: 33 FDCK---DVQDM--PKSI---LSKEEIDHIIMSKD---AVSGTLRLFWTLLSKQEEMVQK 81
Query: 118 FSESTFMPSEY----VKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF----LGRK 169
F E Y + S ++ Y D R+ + + VF + R
Sbjct: 82 FVEEVLRI-NYKFLMSPIKTEQR---QPSMMTRMYIEQRD---RLYNDNQVFAKYNVSRL 134
Query: 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGE----LVILVAFIVLKEKKTSS 225
+K+ R AL E LR +V+ + G + + V + K
Sbjct: 135 QPYLKL---RQALLE----LRPAKNVL----I-DGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 226 EIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADET 285
+IF ++K+ S + L M+ +D ++ S S +S H
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDP---------NWTSRSDHSSNIKLRIHSIQAE 233
Query: 286 KASDLLQVIRKAFGHALMV------EEVLHHDNFFTMG------------GNSIAAAHVA 327
LL+ K + + L+V + N F + + ++AA
Sbjct: 234 L-RRLLK--SKPYENCLLVLLNVQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 328 HNLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSAD---------ANWKLNL--EEDKE 376
H + TP +++ +LL K LD +L++ E ++
Sbjct: 288 HISLDHHSMTL---TPDEVK-SLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 377 HQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHH---------KD-GLP-------WN- 418
+ N ++ ++ S +P + +P W
Sbjct: 340 GLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 419 -LSSVPMS-----CSFSRCNKVMHEEKIRGNDLCGVNWSLEVPRNKRGFIQELWKVHMES 472
+ S M +S K E I + LE+ ++ + +H S
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKVK----LENEYALH-RS 448
Query: 473 CVDA----------SPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-----EGR 517
VD + D Y +G H +R ++ + L E +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQK 506
Query: 518 IE-------CSAAVLADFSQVVVGCYKGKI 540
I S ++L Q+ YK I
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF--YKPYI 534
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 17/137 (12%), Positives = 44/137 (32%), Gaps = 10/137 (7%)
Query: 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658
G G + D ++ ++ + + + + N
Sbjct: 391 GYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE 450
Query: 659 VICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSIYSFEQE 716
+ G + A + +G W ++ G T+ L V + +G + + + +
Sbjct: 451 GL-----GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDL---VFYGTLDGYLKARDSD 502
Query: 717 SGNLLWEYSVGDPITAS 733
+G+LLW++ +
Sbjct: 503 TGDLLWKFKIPSGAIGY 519
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 34/234 (14%)
Query: 488 YLFVGSHSHKFICADAKRSSVLWEIKLEG-----RIECSAAVLADFSQVVVGCYKGKIYF 542
L D + ++W I+ E I+ + + + ++ G IY+
Sbjct: 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYY 71
Query: 543 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQL------------IWCGSHDHNLYALDFRNY 590
+ G V P+ + ++ GS +Y ++ N
Sbjct: 72 FNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG 131
Query: 591 RCVYKLPCGGSIFGSPA------------IDEVHDVLYVASTSGRLTAISVKALPFH--- 635
+ G + + E +++ + T L S ++
Sbjct: 132 EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNVTY 191
Query: 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-GGPI 687
+ W + A S + I D ++A D W T G I
Sbjct: 192 STWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGII 245
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 32/225 (14%)
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHDHNLYAL 585
++ +G ++ +D G I W+ + E++ ++ LI D N+Y
Sbjct: 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYF 72
Query: 586 D---------FRNYRCVYKLPC---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633
+ + V P + + +Y S + I++
Sbjct: 73 NAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132
Query: 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHV---------VALDSSGSIIWRCRTG 684
+ + + F S + + I ++ + + S +
Sbjct: 133 IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHSYDGASYNVTYS 192
Query: 685 ------GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723
+ +F+ + R+ S+ + + + W
Sbjct: 193 TWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWV 237
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Length = 582 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 35/147 (23%)
Query: 611 VHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFASLCITSANRHVICC----- 662
V+YV ++ RL A+ K T LW + +P C NR
Sbjct: 67 SDGVIYVTASYSRLFALDAK-----TGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVF 121
Query: 663 --LVDGHVVALD-SSGSIIWR----------CRTGGPIFAGPCTSFALPSQVLICSR--- 706
+D VVAL+ ++G ++W+ TG P + ++ S
Sbjct: 122 FGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTG--KVLLIHGSSGDE 179
Query: 707 ---NGSIYSFEQESGNLLWE-YSVGDP 729
G +++ + ++G +W V
Sbjct: 180 FGVVGRLFARDPDTGEEIWMRPFVEGH 206
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 41/265 (15%), Positives = 80/265 (30%), Gaps = 64/265 (24%)
Query: 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTL 77
SSLK+ + E ++ + + I L++YG +EV G +C +
Sbjct: 212 SSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVETKDGPVIWE- 269
Query: 78 KSVPIGLPISNCDIVLVE---SDTVKP-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHN 133
D E T + +G G L ++ E+ MP +
Sbjct: 270 ------------DHFYPEIIDPVTGEVLPDGSQ--GELVFTS-LTKEA--MP-----VIR 307
Query: 134 NSICNCSVSCGSQTYFRTGDFAR----------RIQSGDLVFLGRKDRTIKINGQRMALE 183
+RT D R+ GR D + + G +
Sbjct: 308 ---------------YRTRDLTALLPPTARAMRRLAK----ITGRSDDMLIVRGVNVFPS 348
Query: 184 EIEHTLRGHPDVVDTA--VVSHK-HQGELVILV---AFIVLKEKKTSSEIFLSSIKSWVS 237
+IE + P + +S H L + V + ++ +
Sbjct: 349 QIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIK 408
Query: 238 SKLPLAMIPNRFVFMDSLPMTSSGK 262
+ + ++ + +P T++GK
Sbjct: 409 TMVGVSSGV-TVLAAGGIPATATGK 432
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 37/164 (22%)
Query: 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVPAFA 648
YKL + +P + V V+Y + A+ + +W ++ +
Sbjct: 52 WSYKLDLDRGVEATPIV--VDGVMYTTGPFSVVYALDAR-----DGRLIWKYDPQSDRHR 104
Query: 649 S--LCITSANRH-------VICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP 698
+ C + NR V ++DG + A+D +G W T + +
Sbjct: 105 AGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS----YTIT 160
Query: 699 SQVLICSRN-------------GSIYSFEQESGNLLWEYSVGDP 729
+ + G + +++ E+G W +
Sbjct: 161 GAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPG 204
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 26/145 (17%), Positives = 53/145 (36%), Gaps = 36/145 (24%)
Query: 611 VHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVP--AFASLCITSANRHVICC--- 662
V+Y + + R+ A+ + LW ++ EV + C + NR V
Sbjct: 65 HDGVIYTSMSWSRVIAVDAA-----SGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDK 119
Query: 663 ----LVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR----------- 706
+DG ++ALD+ +G IW +T P +++ +
Sbjct: 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPA-----KPYSITGAPRVVKGKVIIGNGGAEY 174
Query: 707 --NGSIYSFEQESGNLLWEYSVGDP 729
G + +++ ++G L W +
Sbjct: 175 GVRGFVSAYDADTGKLAWRFYTVPG 199
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 32/161 (19%)
Query: 593 VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHELEVP--AF 647
Y L + +P + V ++YV+++ + AI + T +W ++ ++
Sbjct: 60 SYNLESTRGVEATPVV--VDGIMYVSASWSVVHAIDTR-----TGNRIWTYDPQIDRSTG 112
Query: 648 ASLCITSANR-------HVICCLVDGHVVALDS-SGSIIWRCRTGGPIFAGPCTSFALP- 698
C NR V DG ++ALD+ +G +W T G T P
Sbjct: 113 FKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNT-FEGQKGSLTITGAPR 171
Query: 699 --SQVLICSRN-------GSIYSFEQESGNLLWE-YSVGDP 729
+I G I +++ E+G W +SV
Sbjct: 172 VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGD 212
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 24/199 (12%), Positives = 52/199 (26%), Gaps = 15/199 (7%)
Query: 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597
G + LD G + A D + P
Sbjct: 337 GFFFVLDRTNGKFISAKN----FVPVNWASGYDKHGK---PIGIAAARDGSKPQDAVPGP 389
Query: 598 CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657
G + + + ++Y+ + + + + + +
Sbjct: 390 YGAHNWHPMSFNPQTGLVYLPAQ--NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447
Query: 658 HVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSIYSFE 714
G ++A D + W P G T+ + V + +G + ++
Sbjct: 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNV---VFQGTADGRLVAYH 504
Query: 715 QESGNLLWEYSVGDPITAS 733
+G LWE G + A+
Sbjct: 505 AATGEKLWEAPTGTGVVAA 523
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 12/143 (8%)
Query: 593 VYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCI 652
+ G G + D LY + + + +
Sbjct: 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNG 437
Query: 653 TSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSRNGSI 710
+ G + A D ++G W + G T L V + +G +
Sbjct: 438 PTKKEM-------GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL---VWYATLDGYL 487
Query: 711 YSFEQESGNLLWEYSVGDPITAS 733
+ + + G LW + + S
Sbjct: 488 KALDNKDGKELWNFKMPSGGIGS 510
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 32/200 (16%), Positives = 66/200 (33%), Gaps = 67/200 (33%)
Query: 552 WTFQT--CGEVKCQP-VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608
W+F T + P V+ + + +N YAL+
Sbjct: 44 WSFSTGVLNGHEGAPLVIG--DMMYVHSAFPNNTYALN---------------------- 79
Query: 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF--ASLCITSANR-------HV 659
+ G++ +W H+ + A A +C +R +
Sbjct: 80 ---------LNDPGKI------------VWQHKPKQDASTKAVMCCDVVDRGLAYGAGQI 118
Query: 660 ICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGS-------I 710
+ +GH++ALD +G I W P T ++ ++ +G+ +
Sbjct: 119 VKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAV 178
Query: 711 YSFEQESGNLLWE-YSVGDP 729
+F+ ++G L W ++ G
Sbjct: 179 NAFDLKTGELKWRAFATGSD 198
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 829 | |||
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.96 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.96 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.96 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.96 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.96 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.96 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.96 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.96 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.95 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.95 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.92 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.92 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.92 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.92 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.91 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.91 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.89 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.88 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.81 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.81 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.8 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.8 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 99.79 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.79 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.79 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.78 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.78 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.77 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.77 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.77 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.76 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.76 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.76 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.76 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.76 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.75 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.75 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.75 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.74 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.73 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.73 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.72 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.72 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.72 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.72 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.71 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.71 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.71 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.71 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.71 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.71 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.71 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.71 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.71 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.71 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.7 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.7 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.7 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.7 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.69 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.69 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.69 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.69 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.68 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.68 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.68 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.68 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.67 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.67 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.67 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.67 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.67 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.67 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.66 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.66 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.66 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.66 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.66 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.66 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.65 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.65 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.65 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.65 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.64 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.64 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.64 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.61 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.61 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.61 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.61 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.6 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.6 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.6 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.6 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.6 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.59 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 99.58 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.58 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.58 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.57 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.57 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.56 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.56 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.55 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.55 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.54 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.54 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.54 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.54 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.52 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 99.52 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.51 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.51 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.5 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.5 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.49 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.49 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.49 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.48 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.48 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.48 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.48 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.48 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.48 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.46 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.45 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.45 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.45 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.44 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.44 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.43 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.43 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.43 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.42 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.41 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.41 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.41 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.4 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.4 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.4 | |
| 2cq8_A | 110 | 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH | 99.39 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.39 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.37 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.37 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.37 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.36 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.36 | |
| 4i4d_A | 93 | Peptide synthetase NRPS type II-PCP; structural ge | 99.34 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.34 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.33 | |
| 1dny_A | 91 | Non-ribosomal peptide synthetase peptidyl carrier | 99.33 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.31 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.31 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.3 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.29 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.29 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.29 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.27 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.27 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.25 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.24 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.22 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.22 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.22 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.21 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.2 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.19 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.19 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.19 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.18 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.16 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.16 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.16 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.14 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.14 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.12 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.11 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.11 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.11 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.09 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.08 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.08 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.08 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.07 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.07 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.04 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.02 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.01 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.98 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.98 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.95 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.93 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.89 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.89 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.86 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.85 | |
| 2afd_A | 88 | Protein ASL1650; twisted antiparallel helical bund | 98.85 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.84 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.83 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.83 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.82 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.8 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.78 | |
| 2ju1_A | 95 | Erythronolide synthase; carrier protein domain, mo | 98.77 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.77 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.76 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.75 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.75 | |
| 2kr5_A | 89 | PKS, aflatoxin biosynthesis polyketide synthase; a | 98.74 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.74 | |
| 2liu_A | 99 | CURA; holo state, transferase; NMR {Lyngbya majusc | 98.73 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.72 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.72 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.71 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.71 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.7 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.7 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.68 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.68 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 98.67 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.66 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.65 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.65 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.64 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 98.62 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.62 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.62 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.6 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.6 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.6 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.58 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.58 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.56 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.56 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.52 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.52 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.49 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.47 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.46 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.45 | |
| 1l0i_A | 78 | Acyl carrier protein; acyl chain binding, fatty ac | 98.45 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.44 | |
| 2ava_A | 82 | ACP I, acyl carrier protein I, chloroplast; four-h | 98.43 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.42 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.38 | |
| 2lol_A | 81 | ACP, acyl carrier protein; lipid transport; NMR {R | 98.38 | |
| 2ehs_A | 77 | ACP, acyl carrier protein; lipid transport, struct | 98.38 | |
| 2cnr_A | 82 | FAS, ACP, acyl carrier protein; polykdetide, phosp | 98.37 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.36 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.36 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.32 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.32 | |
| 2l22_A | 212 | Mupirocin didomain acyl carrier protein; biosynthe | 98.3 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.3 | |
| 1x3o_A | 80 | Acyl carrier protein; structural genomics, riken s | 98.29 | |
| 2dnw_A | 99 | Acyl carrier protein; ACP, fatty acid biosynthesis | 98.25 | |
| 2kjs_A | 87 | Putative acyl carrier protein; alpha, ACP, PNS, st | 98.23 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.2 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.19 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.19 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.16 | |
| 3gzm_A | 81 | Acyl carrier protein; helix bundle, phosphopanteth | 98.14 | |
| 1or5_A | 83 | Acyl carrier protein; ACP, biosynthesis, frenolici | 98.11 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.1 | |
| 1f80_D | 81 | Acyl carrier protein; transferase; HET: PN2; 2.30A | 98.09 | |
| 2qnw_A | 82 | Acyl carrier protein; malaria, SGC, structural gen | 98.07 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.07 | |
| 1nq4_A | 95 | Oxytetracycline polyketide synthase acyl carrier p | 98.06 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.06 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.02 | |
| 1klp_A | 115 | ACP, ACPM, meromycolate extension acyl carrier pro | 98.02 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.99 | |
| 2l3v_A | 79 | ACP, acyl carrier protein; structural genomi seatt | 97.98 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.97 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.95 | |
| 2jq4_A | 105 | AGR_C_4658P, hypothetical protein ATU2571; ATC2521 | 97.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.93 | |
| 3ejb_A | 97 | Acyl carrier protein; protein-protein complex, cyt | 97.92 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.92 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.9 | |
| 2kwl_A | 84 | ACP, acyl carrier protein; structural genomics, se | 97.89 | |
| 1af8_A | 86 | Actinorhodin polyketide synthase acyl carrier Pro; | 97.89 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.88 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 97.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.88 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 97.84 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.82 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.79 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.79 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.78 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 97.77 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.75 | |
| 2cg5_B | 91 | Fatty acid synthase; transferase-hydrolase complex | 97.74 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.71 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.68 | |
| 2amw_A | 83 | Hypothetical protein NE2163; all helical protein, | 97.66 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.64 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.63 | |
| 1vku_A | 100 | Acyl carrier protein; TM0175, structural genomics, | 97.62 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 97.62 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.62 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.6 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.59 | |
| 4dxe_H | 101 | ACP, acyl carrier protein; acyl-carrier-protein sy | 97.52 | |
| 2lte_A | 103 | Specialized acyl carrier protein; APO protein, tra | 96.67 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.48 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 97.47 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.42 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.42 | |
| 2fq1_A | 287 | Isochorismatase; ENTB, NRPS, multi-domain, ACP, hy | 97.41 | |
| 1dv5_A | 80 | APO-DCP, APO-D-alanyl carrier protein; 3-helix bun | 97.41 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 97.38 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.37 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.35 | |
| 2l4b_A | 88 | Acyl carrier protein; infectious disease, human gr | 97.33 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.31 | |
| 2kw2_A | 101 | Specialized acyl carrier protein; structural genom | 97.29 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.21 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 97.2 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.19 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.17 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.16 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.16 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.16 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 97.14 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.13 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.06 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.04 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.03 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.03 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 97.0 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.97 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.93 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.93 | |
| 2cgq_A | 113 | Acyl carrier protein ACPA; RV0033, protein transpo | 96.9 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.9 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.86 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 96.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.8 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 96.77 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.71 | |
| 2lki_A | 105 | Putative uncharacterized protein; helical bundle, | 96.69 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.67 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.65 | |
| 2l9f_A | 102 | CALE8, meacp; transferase, acyl carrier protein; N | 96.6 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.54 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 96.54 | |
| 3ce7_A | 107 | Specific mitochodrial acyl carrier protein; malari | 96.51 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 96.51 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.48 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.44 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.38 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.37 | |
| 2kci_A | 87 | Putative acyl carrier protein; alpha, ACP, PCP, st | 96.37 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.36 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.36 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 96.35 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.27 | |
| 1fh1_A | 92 | NODF, nodulation protein F; ROOT nodulation factor | 96.25 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.24 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.2 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.14 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.1 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 95.97 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.88 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.86 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.84 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.8 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.51 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.42 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.28 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.05 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 93.84 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.39 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 92.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.55 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.0 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 91.18 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 91.08 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.77 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 90.3 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 90.0 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 88.71 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 88.68 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 85.17 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 84.42 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.28 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 83.14 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 80.81 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 80.38 |
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-56 Score=552.52 Aligned_cols=393 Identities=23% Similarity=0.352 Sum_probs=326.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++++++.+.+++++++|.||+||++++++.......+ .....+++|+|+++++++|+|
T Consensus 718 ~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~-----~~~~~~~iG~p~~~~~~~i~d 792 (1304)
T 2vsq_A 718 WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLP-----DSISSLPIGKPISNASVYILN 792 (1304)
T ss_dssp HHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCC-----SSCSSCCCBEECTTEEEEEEC
T ss_pred cCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcc-----ccCCCCCCceeeCCCEEEEEC
Confidence 467899999999999999999999988788999999999999888765443211 123567899999999999999
Q ss_pred CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 96 SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 96 ~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
+++ +.|..|||+|+|+++++||+++|+.|+++|+..|.. .+.+||||||+|++++||.|+|+||+|||
T Consensus 793 ~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~---------~g~~~yrTGDl~~~~~dG~l~~~GR~d~q 863 (1304)
T 2vsq_A 793 EQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFK---------PGETLYRTGDLARWLPDGTIEYAGRIDDQ 863 (1304)
T ss_dssp TTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTS---------TTCEEEEEEEEEEECTTSCEEEEEEGGGE
T ss_pred CCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCC---------CCCeeEecCCeEEEcCCCeEEEEcCCCCE
Confidence 876 457789999999999999999999999999876642 25789999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.|||++|.+||+|.+|+|++.++...+..++|+++..... ..+++++++++.||.||+|..++++
T Consensus 864 vki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~-----~~~~l~~~l~~~Lp~ymvP~~~~~l 938 (1304)
T 2vsq_A 864 VKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL-----SAEDVKAHLKKQLPAYMVPQTFTFL 938 (1304)
T ss_dssp EEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS-----CHHHHHHHHHHHSCGGGSCSEEEEE
T ss_pred EEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC-----CHHHHHHHHHHhChHhhhccEEEEe
Confidence 99999999999999999999999999999988877778899999876521 2357999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc--
Q 003331 253 DSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL-- 330 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l-- 330 (829)
++||+|++|||||++|++...... ......+.+++|+.|+++|+++|+.+.|+.+||||++|||||+|++|+++|
T Consensus 939 ~~lP~t~~GKidR~~L~~~~~~~~---~~~~~~p~~~~e~~l~~~~~~vL~~~~i~~~~~ff~lGg~Sl~a~~l~~~l~~ 1015 (1304)
T 2vsq_A 939 DELPLTTNGKVNKRLLPKPDQDQL---AEEWIGPRNEMEETIAQIWSEVLGRKQIGIHDDFFALGGHALKAMTAASRIKK 1015 (1304)
T ss_dssp SCCCCCSSCSSCCSCCCCCCGGGG---CCCCCCCSSHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHSSS
T ss_pred cccCCCCCcccCHhhcCCcchhhh---cccccCCCChHHHHHHHHHHHHcCCCccCCCCCHHHhCCChHHHHHHHHHHHH
Confidence 999999999999999987654322 123345778999999999999999999999999999999999999999986
Q ss_pred ----CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhhhhhcccccCCccccCC
Q 003331 331 ----GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKP 406 (829)
Q Consensus 331 ----~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~ 406 (829)
.+++..+|++||+++||.++.......... ..... .....+++|+|+..|....|..++.+|. +.++|+++
T Consensus 1016 ~~g~~l~~~~~~~~~ti~~la~~~~~~~~~~~~~--~~~~~--~~~~~~L~~l~~~~g~~~~y~~la~~L~-~~~v~~l~ 1090 (1304)
T 2vsq_A 1016 ELGIDLPVKLLFEAPTIAGISAYLKNGGSDGLQD--VTIMN--QDQEQIIFAFPPVLGYGLMYQNLSSRLP-SYKLCAFD 1090 (1304)
T ss_dssp TTSCCCCSSCTTTCCSHHHHHHHHHHTTSSSTTT--SEEEC--TTSCCEEECCCCTTCBGGGGHHHHTTCC-SCEEEECB
T ss_pred HhCCCCCHHHHHhCCCHHHHHHHHHhcCCCcccc--ccccc--cccCCcceeecccccchHHHHHHHhccc-ccceEeec
Confidence 378899999999999999998654322111 10111 1234569999999999999999999998 88888876
Q ss_pred cccccCC--------CCCccCCCCCC-eeeecccccee
Q 003331 407 ELHHHKD--------GLPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 407 ~~~~~~~--------~~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
......- ..-.+..||.| |||+|+.++++
T Consensus 1091 ~~~~~~~~~~~~~~i~~~~~~gp~~l~G~S~Gg~lA~e 1128 (1304)
T 2vsq_A 1091 FIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFE 1128 (1304)
T ss_dssp CCCSTTHHHHHHHHHHHHCCSSCEEEEEETTHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCeEEEEecCCchHHHH
Confidence 5321000 00112348999 99999998877
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-53 Score=486.32 Aligned_cols=315 Identities=23% Similarity=0.311 Sum_probs=196.9
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.+++|||++++++.+++.+.+++++++|.||+||++++++....... .......++|+|+++++++
T Consensus 271 ~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-----~~~~~~~~iG~p~~~~~~~ 345 (620)
T 4dg8_A 271 DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDD-----DLEEDDIPIGKAIAGTAVL 345 (620)
T ss_dssp CGGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTG-----GGGSSSCCCBEECTTEEEE
T ss_pred ChhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccc-----ccCCCCCCceecccCcEEE
Confidence 34568899999999999999999999988889999999999999987765433221 1122567899999999999
Q ss_pred EecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 93 LVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 93 i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
|+|+++ +++..|||+|+|+++++||+++|+.|++.|...+... ...+||+|||+|++++||.|+|+||
T Consensus 346 i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~--------~~~~~yrTGDl~~~~~dG~l~~~GR 417 (620)
T 4dg8_A 346 LLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRG--------RLLRAYRTGDRARYDEQGRLRFIGR 417 (620)
T ss_dssp EECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETT--------EEEEEEEEEEEEEECTTSCEEEEEC
T ss_pred EECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCC--------CCceEEeCCCEEEECCCCeEEEEcc
Confidence 999876 3467799999999999999999999999998765321 1128999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
.|||||++|+||+|.|||++|.+||+|.+|+|++.++...... +++++.... .++++++++||.||+|..
T Consensus 418 ~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~l-v~~~~~~~~---------~~~~~l~~~Lp~y~~P~~ 487 (620)
T 4dg8_A 418 GDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQL-LCAWTGKAD---------ASPQALLRQLPTWQRPHA 487 (620)
T ss_dssp SSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEE-EEEEEECTT---------CCCHHHHHHSCGGGSCSE
T ss_pred CCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEE-EEEEecChH---------HHHHHHHHhChhhcCCcE
Confidence 9999999999999999999999999999999999887755444 444443321 234456778999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHH
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAH 328 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~ 328 (829)
++++++||+|++|||||++|++.+...... ...+.++.|+.++++|+++|+.+.++.+||||++|||||+|++|++
T Consensus 488 ~~~v~~lP~t~~GKidR~~L~~~~~~~~~~----~~~~~~~~e~~l~~iw~~vL~~~~~~~~d~Ff~lGGdSl~a~~l~~ 563 (620)
T 4dg8_A 488 CVRVEALPLTAHGKLDRAALLRRLEEPLER----CASALDPDQRGCAQLWSELLGCEVGAADQDFFLCGGNSLLALQLVA 563 (620)
T ss_dssp EEECSSCCCC----CCHHHHHHHTCSCC----------------------------------------------------
T ss_pred EEEECcCCCCcccCHhHHHHhhcccccccc----ccCCCCHHHHHHHHHHHHHhCCCCCCCCCChhhccCcHHHHHHHHH
Confidence 999999999999999999998766543322 2345677899999999999999999999999999999999999987
Q ss_pred Hc-------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 329 NL-------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 329 ~l-------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+| .+++.++|++||+++||.+|.+..
T Consensus 564 ~l~~~~~~~~l~~~~~f~~pti~~la~~l~~~~ 596 (620)
T 4dg8_A 564 LCQSAGAGANLGLADLQANSRLDQFSRLLRSHG 596 (620)
T ss_dssp ---------------------------------
T ss_pred HHHhhCCCCCcCHHHHhcCCCHHHHHHHHHhcC
Confidence 65 367889999999999999997654
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=464.53 Aligned_cols=307 Identities=22% Similarity=0.306 Sum_probs=262.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~ 92 (829)
...+++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... ......++|.|+ ++++++
T Consensus 298 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~~ 368 (617)
T 3rg2_A 298 RAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDS--------AEKIIHTQGYPMCPDDEVW 368 (617)
T ss_dssp TTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSC--------HHHHHHCCCEESCTTCEEE
T ss_pred cccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCc--------ccccccCCCccCCCCceEE
Confidence 34689999999999999999999999988 78999999999998655432111 011345789997 788999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.++.|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|+||.
T Consensus 369 i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~---------------~~~yrTGDl~~~~~dG~l~~~GR~ 433 (617)
T 3rg2_A 369 VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA---------------NGFYCSGDLISIDPEGYITVQGRE 433 (617)
T ss_dssp EECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCT---------------TSCEEEEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCC---------------CCceecCceEEEcCCceEEEEeec
Confidence 999776 45678999999999999999999999999953 679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~ 248 (829)
|||||++|+||+|.|||++|.+||.|.+|+|+..++...+..++++++..... ...++++++++ .||.||+|..
T Consensus 434 dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~-----~~~~l~~~l~~~~lp~~~vP~~ 508 (617)
T 3rg2_A 434 KDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL-----RAVQVRRFLREQGIAEFKLPDR 508 (617)
T ss_dssp SSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-----CHHHHHHHHHTTTCCGGGSCSE
T ss_pred CCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC-----CHHHHHHHHHhCCCccccCCcE
Confidence 99999999999999999999999999999999998888888899999887632 13578888988 6999999999
Q ss_pred EEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccC-cceeccCCCccccCCChHHHHHHH
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALM-VEEVLHHDNFFTMGGNSIAAAHVA 327 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff~lGgdSl~a~~l~ 327 (829)
++++++||+|++|||||++|++++...... ...+.+..++.++++|.++|+ .+.++.+||||++|||||+||+|+
T Consensus 509 ~~~v~~lP~t~~GKidR~~L~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~ 584 (617)
T 3rg2_A 509 VECVDSLPLTAVGKVDKKQLRQWLASRASA----GRASIPASKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMALA 584 (617)
T ss_dssp EEECSCCCBCTTSSBCHHHHHHHHHHHHHH----SSSCCCCSHHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHH
T ss_pred EEEecccCCCCCCCCcHHHHHHHHhccccc----ccccccccHHHHHHHHHHHhccCCCCCCCCChhhcCccHHHHHHHH
Confidence 999999999999999999999876543222 112233457789999999996 467899999999999999999999
Q ss_pred HHc-----CCcchhhhcCCCHHHHHHHHHhh
Q 003331 328 HNL-----GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 328 ~~l-----~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++| ++++..+|++||+++||++|.++
T Consensus 585 ~~l~~~~~~~~~~~~~~~pti~~la~~l~~~ 615 (617)
T 3rg2_A 585 ARWRKVHGDIDFVMLAKNPTIDAWWKLLSRE 615 (617)
T ss_dssp HHHHTTSTTCCHHHHHHSCCHHHHHHHHCC-
T ss_pred HHHHHhcCCCCHHHHhcCCCHHHHHHHHHhh
Confidence 876 48899999999999999998754
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=386.19 Aligned_cols=277 Identities=27% Similarity=0.435 Sum_probs=212.3
Q ss_pred cchhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccc
Q 003331 4 VLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG 83 (829)
Q Consensus 4 l~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (829)
++|++...+....+++||.+++|||++++++.+++.+ .++++|.||+||+++.++....... ......++|
T Consensus 279 ~~P~~~~~l~~~~~~~lr~~~~gG~~l~~~~~~~~~~---~~~~~~~YG~TE~~~~~~~~~~~~~------~~~~~~~vG 349 (563)
T 1amu_A 279 LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE------TIGHSVPIG 349 (563)
T ss_dssp ECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS------CCCSSCCCB
T ss_pred eCHHHHHHHHhcccccccEEEEEEecCCHHHHHHHHh---CCeEEEEECcCHHhHhheeeecccc------cCCCCCccc
Confidence 4566666666667889999999999999999998876 3789999999999877665432211 112456899
Q ss_pred cccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 84 LPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 84 ~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
+|+++++++|+|+++ +.++.|||+|+|++++.||+++|+.|++.|...+.. .+++||+|||+|++++|
T Consensus 350 ~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~---------~g~~w~~TGDlg~~d~d 420 (563)
T 1amu_A 350 APIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV---------PGEKLYKTGDQARWLSD 420 (563)
T ss_dssp EECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS---------TTSEEEEEEEEEEECTT
T ss_pred ceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCC---------CCCEEEecCCEEEEcCC
Confidence 999999999999776 356679999999999999999999999999764431 24689999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcC
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l 240 (829)
|.|+|+||+||+||++|+||+|.|||++|.+||.|.+|+|++.++...++.++|++++.... ..++|+++++++|
T Consensus 421 G~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~-----~~~~l~~~l~~~L 495 (563)
T 1amu_A 421 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI-----PLEQLRQFSSEEL 495 (563)
T ss_dssp SCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC-----CHHHHHHHHHHHS
T ss_pred CeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC-----CHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999887788899999876432 2357999999999
Q ss_pred CCCCcCCeEEEeCcccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCcc
Q 003331 241 PLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMVE 305 (829)
Q Consensus 241 ~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 305 (829)
|.|++|..++++++||+|++|||||++|++...... .......+.+++|+.|.++|+++|+.+
T Consensus 496 ~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~--~~~~~~~p~~~~e~~l~~iw~~~L~~~ 558 (563)
T 1amu_A 496 PTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFG--MRVDYEAPRNEIEETLVTIWQDVLGSH 558 (563)
T ss_dssp CGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC------------------------------
T ss_pred chhhCCcEEEEecccCCCCCcChhHHhcCCcccccc--cccccCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999998654321 112234678899999999999999864
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=368.69 Aligned_cols=238 Identities=25% Similarity=0.352 Sum_probs=207.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+|+++++|.||+||++.+++....... ........++|+|+++++++|
T Consensus 293 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 368 (536)
T 3ni2_A 293 KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAK----EPFDIKPGACGTVVRNAEMKI 368 (536)
T ss_dssp GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSS----SCCCCCTTCCCEECSSCEEEE
T ss_pred cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCC----ccccCCCCCeeEeCCCcEEEE
Confidence 4568999999999999999999999999999999999999999876554321110 111235678999999999999
Q ss_pred ecCC-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESD-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++ + +.++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||+
T Consensus 369 ~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 433 (536)
T 3ni2_A 369 VDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID---------------KEGWLHTGDIGYIDDDDELFIVDRL 433 (536)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEEEEC
T ss_pred EeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhcc---------------CCCceEcccEEEEcCCceEEEEecc
Confidence 9854 3 4577899999999999999999999998873 3689999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++..+..... .++|+++++++||.|++|..+
T Consensus 434 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i 510 (536)
T 3ni2_A 434 KELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRV 510 (536)
T ss_dssp SCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEE
T ss_pred cceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEE
Confidence 99999999999999999999999999999999999888888999999987654333 368999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 511 ~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 511 FFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EECSCCCBCTTSCBCHHHHHTC--
T ss_pred EEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999999999999988653
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=371.34 Aligned_cols=234 Identities=26% Similarity=0.341 Sum_probs=192.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.++|.+.+ +++++|.||+||+++.++..+.. .....++|+|+++++++|
T Consensus 337 ~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~G~p~~~~~v~i 406 (580)
T 3etc_A 337 HYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM---------EPKPGSIGKPTPGYKIEL 406 (580)
T ss_dssp --CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCTTS---------CCCTTCCBEECTTCEEEE
T ss_pred cCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCCCC---------CCCCCccccCCCCCEEEE
Confidence 34678999999999999999999999887 78999999999998766543321 225678999999999999
Q ss_pred ecCCCC---CCCCCeEEEcc-----ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 94 VESDTV---KPDEGEIYAGG-----LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 94 ~d~~~~---~~~~Gel~i~g-----~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
+|+++. +++.|||+|+| +++++||+++|+.|.+.|. ++||+|||+|++++||+|+|
T Consensus 407 vd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~----------------~gwy~TGDlg~~d~dG~l~~ 470 (580)
T 3etc_A 407 MDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH----------------DGYYHTGDMAWMDEDGYLWF 470 (580)
T ss_dssp ECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEE
T ss_pred ECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC----------------CCEEecCcEEEECCCCcEEE
Confidence 998763 57789999997 7899999999999999883 57999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCc
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 245 (829)
+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|++++..+....+...++|++++++.||.|++
T Consensus 471 ~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 550 (580)
T 3etc_A 471 VGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKY 550 (580)
T ss_dssp EEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGC
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccC
Confidence 99999999999999999999999999999999999999998889999999999887666666778999999999999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
|+.++++++||+|++|||+|++|++.++
T Consensus 551 P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 551 PRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp CSEEEEECC-------------------
T ss_pred CeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 9999999999999999999999998654
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=370.46 Aligned_cols=242 Identities=23% Similarity=0.314 Sum_probs=209.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 91 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 91 (829)
..++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... ......++|+|++++++
T Consensus 374 ~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~-------~~~~~~s~G~p~~g~~v 446 (652)
T 1pg4_A 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA-------IELKAGSATRPFFGVQP 446 (652)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT-------CCBCTTCCBSBCTTCCE
T ss_pred cCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC-------cCccCCccccCcCCCeE
Confidence 356899999999999999999999999874 289999999999987655422111 12356789999999999
Q ss_pred EEecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 92 VLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 92 ~i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|+|+++. .+..|||+|+| |++++|||++|+.+.+.|... .++||+|||+|++++||+|+|+
T Consensus 447 ~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~-------------~~g~y~TGDlg~~d~dG~l~i~ 513 (652)
T 1pg4_A 447 ALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFST-------------FKNMYFSGDGARRDEDGYYWIT 513 (652)
T ss_dssp EEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSS-------------STTSEEEEEEEEECTTSCEEEE
T ss_pred EEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhc-------------CCCEEECCcEEEEcCCCcEEEE
Confidence 99998774 34569999999 799999999987766655321 2579999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++.+....+.+.++|+++++++||.|++|
T Consensus 514 GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P 593 (652)
T 1pg4_A 514 GRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATP 593 (652)
T ss_dssp EESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCC
T ss_pred ecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999888888999999998765544556789999999999999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
..++++++||+|++|||+|++|++.+...
T Consensus 594 ~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 622 (652)
T 1pg4_A 594 DVLHWTDSLPKTRSGKIMRRILRKIAAGD 622 (652)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred eEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence 99999999999999999999999887654
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=361.14 Aligned_cols=232 Identities=21% Similarity=0.275 Sum_probs=204.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+.+.+.+ +++++|.||+||++..++... .......++|+|+++++++|
T Consensus 264 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~---------~~~~~~~~~G~p~~~~~~~i 333 (503)
T 4fuq_A 264 KETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSNPY---------DGDRVPGAVGPALPGVSARV 333 (503)
T ss_dssp TTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCCCS---------SSCCCTTEEEEBCTTCEEEE
T ss_pred ccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccccCC---------CCCCcCCccccCCCCeEEEE
Confidence 34578999999999999999999999987 689999999999986543211 11234568999999999999
Q ss_pred ecC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|+ ++ ++++.|||+|+|+++++||+++|+.|.+.|.. ++||+|||+|++++||.++|+||.
T Consensus 334 ~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~~~TGDl~~~~~dG~l~~~GR~ 398 (503)
T 4fuq_A 334 TDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRD---------------DGFFITGDLGKIDERGYVHILGRG 398 (503)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCT---------------TSCEEEEEEEEECTTCEEEECCSS
T ss_pred EECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCC---------------CCCeEcceeEEEcCCCcEEEEecC
Confidence 984 33 46778999999999999999999999998843 679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||+|.+|+|++.+++..++.+++++++....... .++++++++++||.|++|..+
T Consensus 399 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i 475 (503)
T 4fuq_A 399 KDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKV 475 (503)
T ss_dssp TTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEE
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEE
Confidence 99999999999999999999999999999999999988888999999987654433 367999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 476 ~~v~~lP~t~~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 476 IFVDDLPRNTMGKVQKNVLRETYK 499 (503)
T ss_dssp EEESCCCBCTTSCBCHHHHHHHTT
T ss_pred EEECCCCCCcccceeHHHHHHHHH
Confidence 999999999999999999998764
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-39 Score=365.66 Aligned_cols=240 Identities=25% Similarity=0.292 Sum_probs=169.5
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHh----C--CCceEEeecCccccccccccccccCCCcccccCCCCccccccccCC
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKL----F--PNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISN 88 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~----~--~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 88 (829)
.++++||.+++|||++++++.+++.+. + |+++++|.||+||++.+++...... .....++|+|+++
T Consensus 293 ~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~~G~p~~~ 364 (549)
T 3g7s_A 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR--------LDKSTTQGVPMSD 364 (549)
T ss_dssp CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG--------GGGTTSCCEECTT
T ss_pred CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc--------cCcCCCccccCCC
Confidence 568999999999999999999999887 5 3489999999999997766533211 1245689999999
Q ss_pred cEEEEec-CCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEE
Q 003331 89 CDIVLVE-SDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLV 164 (829)
Q Consensus 89 ~~~~i~d-~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~ 164 (829)
++++|+| +++ +.++.|||+|+|++++.||+++|+.|++.|...+ ++.+||+|||+|++++||.|+
T Consensus 365 ~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~-----------~g~~~~~TGDl~~~~~dG~l~ 433 (549)
T 3g7s_A 365 IELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDE-----------KGRKFFRTGDVGFIDEEGFLH 433 (549)
T ss_dssp CEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECT-----------TCCEEEEEEEEEEECTTSCEE
T ss_pred CEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccC-----------CCCceEccCcEEEEcCCceEE
Confidence 9999998 444 4677899999999999999999999999996422 145699999999999999999
Q ss_pred EEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCC
Q 003331 165 FLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 165 ~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 244 (829)
|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+... .....++|+++++++||.|+
T Consensus 434 ~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~-~~~~~~~l~~~l~~~L~~~~ 512 (549)
T 3g7s_A 434 FQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR-GKVDEEDIIEWVRERISGYK 512 (549)
T ss_dssp EEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-TSCCHHHHHHHHHTTCC---
T ss_pred EeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-CcCCHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999988877888999999876521 11234689999999999999
Q ss_pred cCCeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 245 IPNRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 245 ~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+|..++++++||+|++|||||++|++.+..
T Consensus 513 ~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 542 (549)
T 3g7s_A 513 RVREVEFVEELPRTASGKLLRRLLREKEAE 542 (549)
T ss_dssp --CCCCEEEECC------------------
T ss_pred cceEEEEeccCCCCCCcCEeHHHHHHHhhc
Confidence 999999999999999999999999987654
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=356.93 Aligned_cols=244 Identities=30% Similarity=0.480 Sum_probs=211.2
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+|+++++|.||+||+++.++....... ........++|+|+++++++|
T Consensus 256 ~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 331 (511)
T 3e7w_A 256 QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITND----VISRSESLPVGFAKPDMNIFI 331 (511)
T ss_dssp TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHH----HHTTCSSCCCBEECTTCEEEE
T ss_pred cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEecccc----ccccCCcCCCcceeCCCEEEE
Confidence 4567899999999999999999999999999999999999999877665432210 011235568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|++.|...+ +.+||+|||+|++ +||.++|+||.|
T Consensus 332 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------g~~~~~TGDlg~~-~dG~l~~~GR~~ 398 (511)
T 3e7w_A 332 MDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHE------------GQWAYRTGDAGFI-QDGQIFCQGRLD 398 (511)
T ss_dssp ECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESS------------SSEEEEEEEEEEE-ETTEEEEEEESS
T ss_pred ECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCC------------CCEEEeCCCeEEc-cCCeEEEEcccc
Confidence 99876 3567799999999999999999999999986421 3568999999998 699999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..+..+++++++...... .....++|+++++++||.|++|..+
T Consensus 399 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~ 478 (511)
T 3e7w_A 399 FQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKF 478 (511)
T ss_dssp SEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEE
T ss_pred CEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeE
Confidence 999999999999999999999999999999998887777889999998765433 3345678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
+++++||+|++|||||++|++.+..
T Consensus 479 ~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 479 IYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp EECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEeccCCCCCCcCccHHHHHhHHhh
Confidence 9999999999999999999987653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=355.72 Aligned_cols=245 Identities=31% Similarity=0.486 Sum_probs=212.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||+++.++....... ........++|+|++++++++
T Consensus 257 ~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i 332 (512)
T 3fce_A 257 ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEE----VLDQYKSLPVGYCKSDCRLLI 332 (512)
T ss_dssp TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHH----HHHHCSSCCCEEECTTCEEEE
T ss_pred chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccc----cccccCCCccccccCCcEEEE
Confidence 4568899999999999999999999999999999999999999887764332110 011225678999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|.+.|...+ +++||+|||+|++ +||.++|+||.|
T Consensus 333 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------~~~~~~TGDlg~~-~dG~l~i~GR~~ 399 (512)
T 3fce_A 333 MKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMID------------GERAYKTGDAGYV-ENGLLFYNGRLD 399 (512)
T ss_dssp ECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEET------------TEEEEEEEEEEEE-ETTEEEEEEEGG
T ss_pred ECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCC------------CCEEEeCCceEEe-cCCEEEEecccC
Confidence 99876 3567899999999999999999999999885421 4689999999998 899999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.++...+..+++++++...... .....++|+++++++||.|++|..+
T Consensus 400 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~ 479 (512)
T 3fce_A 400 FQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKF 479 (512)
T ss_dssp GCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEE
T ss_pred CEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEE
Confidence 999999999999999999999999999999999888888889999998765433 3345678999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
+++++||+|++|||+|++|++.+...
T Consensus 480 ~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 480 MYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEecccCCCCCcChHHHHHHhhhhhc
Confidence 99999999999999999999876543
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=360.17 Aligned_cols=235 Identities=25% Similarity=0.394 Sum_probs=201.7
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCc-EEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNC-DIV 92 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~ 92 (829)
..++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++... .+ ......++|+|+++. +++
T Consensus 294 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~---~~-----~~~~~~~~G~p~~~~~~~~ 364 (539)
T 1mdb_A 294 RDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLD---DP-----EEIIVNTQGKPMSPYDESR 364 (539)
T ss_dssp CCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTT---SC-----HHHHHHCCCEESSTTCEEE
T ss_pred CCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCC---Cc-----HHhcCCCCCcccCCCceEE
Confidence 45689999999999999999999999988 789999999999764333211 00 011346799999764 799
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ +.++.|||+|+|+++++||+++|+.|++.|.. ++||+|||+|++++||.|+|+||+
T Consensus 365 i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~~~TGDlg~~~~dG~l~~~GR~ 429 (539)
T 1mdb_A 365 VWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTE---------------DGFYRTGDIVRLTRDGYIVVEGRA 429 (539)
T ss_dssp EECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCT---------------TSCEEEEEEEEECTTSCEEEEEEG
T ss_pred EECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccC---------------CCCeecCceEEECCCCcEEEeccc
Confidence 998776 35678999999999999999999999988853 579999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~ 248 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++..... ..++|+++++++ ||.|++|..
T Consensus 430 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~l~~~~L~~~~~P~~ 505 (539)
T 1mdb_A 430 KDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAP----KAAELKAFLRERGLAAYKIPDR 505 (539)
T ss_dssp GGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCC----CHHHHHHHHHHTTCCGGGSCSE
T ss_pred cceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCC----CHHHHHHHHHhCCCCcccCCCE
Confidence 999999999999999999999999999999999998888888999999874322 235789999997 999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcccccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~~~ 276 (829)
++++++||+|++|||||++|++.+...+
T Consensus 506 i~~v~~lP~t~~GKi~r~~L~~~~~~~i 533 (539)
T 1mdb_A 506 VEFVESFPQTGVGKVSKKALREAISEKL 533 (539)
T ss_dssp EEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred EEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence 9999999999999999999988765443
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.57 Aligned_cols=232 Identities=22% Similarity=0.323 Sum_probs=201.7
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+.+.+. +++++|.||+||+++.++...... ......++|+|+++++++++
T Consensus 281 ~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~~~~~~~~~i~ 351 (517)
T 3r44_A 281 LDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSED-------ALRKAGSAGRATMFTDVAVR 351 (517)
T ss_dssp CCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGG-------TTTTTTCCBEECTTEEEEEE
T ss_pred CCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCcc-------ccccCCCCCcCCCCeEEEEE
Confidence 457899999999999999999999886 789999999999987766543221 12256789999999999999
Q ss_pred cCCCCC--CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCc
Q 003331 95 ESDTVK--PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRT 172 (829)
Q Consensus 95 d~~~~~--~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ 172 (829)
|+++.. ...|||+|+|++++.||+++|+.|.+.| .++||+|||+|++++||.|+|+||.||+
T Consensus 352 d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f----------------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ 415 (517)
T 3r44_A 352 GDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAF----------------DNGWFRTGDIGEIDDEGYLYIKDRLKDM 415 (517)
T ss_dssp CTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTE----------------ETTEEEEEEEEEECTTSCEEEEECGGGC
T ss_pred CCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhh----------------cCCCEecceeEEEcCCeeEEEecCCcCE
Confidence 887632 2279999999999999999999999988 2579999999999999999999999999
Q ss_pred EEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEe
Q 003331 173 IKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFM 252 (829)
Q Consensus 173 ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~ 252 (829)
||++|+||+|.|||++|.+||+|.+|+|++.+++..++.+++++ ........ .++|+++++++||.|++|..++++
T Consensus 416 ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v 491 (517)
T 3r44_A 416 IISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFA 491 (517)
T ss_dssp EEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEEC
T ss_pred EEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEE
Confidence 99999999999999999999999999999999888888888888 44332222 368999999999999999999999
Q ss_pred CcccCCCCCCcchhhhccccccc
Q 003331 253 DSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 253 ~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
++||+|++|||||++|++.+...
T Consensus 492 ~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 492 EAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp SCCCBCTTCCBCHHHHHHHHGGG
T ss_pred CCCCCCCCcCccHHHHHHHHHhh
Confidence 99999999999999999877543
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=356.36 Aligned_cols=228 Identities=25% Similarity=0.388 Sum_probs=185.3
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.++++|.+++|||++++++.+++.+.+ +++++|.||+||+++.++.... ......++|+|+++++++|+|
T Consensus 270 ~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~vG~p~~~~~~~i~d 339 (505)
T 3nyq_A 270 ALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRAD---------GEPRAGTVGVPLPGVELRLVE 339 (505)
T ss_dssp HHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTT---------SCCCTTCCCEECTTCEEEEC-
T ss_pred ccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCCC---------CCCCCCCcccCCCCCEEEEEC
Confidence 467899999999999999999999887 7899999999999876553221 122456899999999999999
Q ss_pred CCCCC------CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 96 SDTVK------PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 96 ~~~~~------~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+++.+ ++.|||+|+|++++.||+++|+.|++.|.. ++||+|||+|++++||.++|+||+
T Consensus 340 ~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~---------------~g~y~TGDl~~~~~dG~l~~~GR~ 404 (505)
T 3nyq_A 340 EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTE---------------DGFFRTGDMAVRDPDGYVRIVGRK 404 (505)
T ss_dssp ----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCT---------------TSCEEEEEEEEECTTSCEEEEEES
T ss_pred CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcC---------------CCCCccCCeEEECCCccEEEeCCc
Confidence 87632 567999999999999999999999998853 679999999999999999999997
Q ss_pred -CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCe
Q 003331 170 -DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNR 248 (829)
Q Consensus 170 -dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~ 248 (829)
|++||++|+||+|.|||++|.+||+|.+|+|++.+++..++.++|++++...... ...++|+++++++||.||+|..
T Consensus 405 ~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~ 482 (505)
T 3nyq_A 405 ATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAP--PALGTLADHVAARLAPHKRPRV 482 (505)
T ss_dssp SCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSC--CCHHHHHHHHHHHTCGGGSCSE
T ss_pred cCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCC--CCHHHHHHHHHhhCCCCcCccE
Confidence 6999999999999999999999999999999999998888999999998753221 2246899999999999999999
Q ss_pred EEEeCcccCCCCCCcchhhhcc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~ 270 (829)
++++++||+|++|||||++|++
T Consensus 483 i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 483 VRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEECSCCCC-------------
T ss_pred EEEECCCCCCCCcCeeHHhhcc
Confidence 9999999999999999999975
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=356.89 Aligned_cols=234 Identities=24% Similarity=0.322 Sum_probs=206.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... .....++|+|+++++++|
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~p~~~~~v~i 387 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSKTM---------KIKPGYMGTAASCYDVQI 387 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCTTS---------CCCTTCCCEECTTCCEEE
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCccc---------ccCCCcccccCCCceEEE
Confidence 34578999999999999999999999887 78999999999998765532211 124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEc-----cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 94 VESDT---VKPDEGEIYAG-----GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~-----g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
+|+++ +.++.|||+|+ |++++.||+++|+.|.+.|. ++||+|||+|++++||.|+|
T Consensus 388 ~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~----------------~~~~~TGDlg~~d~dG~l~~ 451 (570)
T 3c5e_A 388 IDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR----------------GDFWLLGDRGIKDEDGYFQF 451 (570)
T ss_dssp ECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE----------------TTEEEEEEEEEECTTSCEEE
T ss_pred ECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhc----------------CCccccceeEEEcCCceEEE
Confidence 99776 35678999998 99999999999999988883 47999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCC--CchHHHHHHHHHHHHhcCCCC
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKK--TSSEIFLSSIKSWVSSKLPLA 243 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~l~~~l~~~l~~~ 243 (829)
+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++|++.... ...+...++|++++++.||.|
T Consensus 452 ~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~ 531 (570)
T 3c5e_A 452 MGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPY 531 (570)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGG
T ss_pred EecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccc
Confidence 999999999999999999999999999999999999999888888999999987643 233456788999999999999
Q ss_pred CcCCeEEEeCcccCCCCCCcchhhhccccc
Q 003331 244 MIPNRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 244 ~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++|..++++++||+|++|||+|++|++.+.
T Consensus 532 ~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 561 (570)
T 3c5e_A 532 KYPRKIEFVLNLPKTVTGKIQRAKLRDKEW 561 (570)
T ss_dssp GSCSEEEEESCCCBCTTCCBCHHHHHHHHT
T ss_pred cCCcEEEEeccCCCCCCcCCcHHHHHHHHH
Confidence 999999999999999999999999987653
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=356.57 Aligned_cols=234 Identities=19% Similarity=0.217 Sum_probs=206.0
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
.++++||.+++|||++++++.+++.+.+++++++|.||+||++..++.... ......++|+|+++++++|+
T Consensus 306 ~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~---------~~~~~~~~G~~~~~~~~~i~ 376 (548)
T 2d1s_A 306 YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPE---------GDDKPGASGKVVPLFKAKVI 376 (548)
T ss_dssp SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT---------TCCCTTCCBEECTTCEEEEE
T ss_pred ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCc---------ccCCCCCCCccCCCceEEEE
Confidence 367899999999999999999999999988899999999999876654211 12256789999999999999
Q ss_pred cC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 95 ES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 95 d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
|+ ++ ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|+++++|.++|+||.|
T Consensus 377 d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~---------------~~g~~~TGDl~~~~~dG~l~~~GR~~ 441 (548)
T 2d1s_A 377 DLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELID---------------EEGWLHTGDIGYYDEEKHFFIVDRLK 441 (548)
T ss_dssp CTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEEEEGG
T ss_pred eCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhccc---------------CCcEEEccCEEEEcCCCeEEEecccc
Confidence 83 43 4567899999999999999999999988884 26799999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC-eE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN-RF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|++++..+.... .++|+++++++|+.|++|. .+
T Consensus 442 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i 518 (548)
T 2d1s_A 442 SLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGV 518 (548)
T ss_dssp GCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCE
T ss_pred ceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccE
Confidence 9999999999999999999999999999999999888888899999987653322 3679999999999999999 99
Q ss_pred EEeCcccCCCCCCcchhhhccccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
+++++||+|++|||+|++|++.+...
T Consensus 519 ~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 519 RFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEccCCCCCCcchhHHHHHHHHHhhh
Confidence 99999999999999999999876543
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=356.50 Aligned_cols=246 Identities=26% Similarity=0.442 Sum_probs=202.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
...+++||.+++|||++++++.+++.+.+++++++|.||+||+++.++....... ........++|+|+++++++|
T Consensus 260 ~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~vG~p~~~~~~~i 335 (521)
T 3l8c_A 260 QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE----MVDNYTRLPIGYPKPDSPTYI 335 (521)
T ss_dssp TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH----HHHHCSSCEEEEECTTSCEEE
T ss_pred cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc----cccCCCccccccccCCCEEEE
Confidence 3568899999999999999999999999999999999999999877665432210 001124568999999999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|++.|...+ +++||+|||+|+++++|.++|+||.|
T Consensus 336 ~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~------------~~~~~~TGDlg~~d~dG~l~~~GR~~ 403 (521)
T 3l8c_A 336 IDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFK------------GQPAYHTGDIGSLTEDNILLYGGRLD 403 (521)
T ss_dssp ECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEET------------TEEEEEEEEEEEECSSSCEEEEEEGG
T ss_pred ECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCC------------CceeeeCCCEEEEeCCCeEEEeCccc
Confidence 99876 3567799999999999999999999999986421 46899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecC-CceEEEEEEEEecCCCCc----hHHHHHHHHHHHHhcCCCCCc
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQ-GELVILVAFIVLKEKKTS----SEIFLSSIKSWVSSKLPLAMI 245 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~l~~~l~~~l~~~~~ 245 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++..+. ..++.++++++++++... .....++|+++++++||.|++
T Consensus 404 d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 483 (521)
T 3l8c_A 404 FQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMM 483 (521)
T ss_dssp GBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGS
T ss_pred ceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccC
Confidence 999999999999999999999999999999987654 345678899998865322 123467899999999999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
|..++++++||+|++|||||++|++.+..+
T Consensus 484 P~~i~~v~~lP~t~~GKidr~~L~~~~~~~ 513 (521)
T 3l8c_A 484 PSKFLYRDSLPLTPNGKIDIKTLINEVNNR 513 (521)
T ss_dssp CSEEEECSSCCBCTTSSBCHHHHHHHTC--
T ss_pred CeEEEEecccCCCCCcCccHHHHhhhhhcC
Confidence 999999999999999999999999877543
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=364.79 Aligned_cols=243 Identities=28% Similarity=0.431 Sum_probs=118.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEe
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLV 94 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~ 94 (829)
..+++||.+++|||++++++.+++.+.+++++++|.||+||++++++...... ........++|+|+++++++|+
T Consensus 323 ~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~-----~~~~~~~~~iG~p~~~~~v~i~ 397 (570)
T 4gr5_A 323 EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA-----GDLSGTALPIGVPLAGKRAYVL 397 (570)
T ss_dssp GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG-----GGTTSSSCCCBEECTTEEEEEE
T ss_pred hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc-----cccCCCccccceeeCCCEEEEE
Confidence 45789999999999999999999999998999999999999987766433211 1112245689999999999999
Q ss_pred cCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCC
Q 003331 95 ESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDR 171 (829)
Q Consensus 95 d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd 171 (829)
|+++ +.++.|||+|+|++++.||+++|+.|.+.|...+... .++.+||+|||+|++++||.|+|+||+||
T Consensus 398 d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~-------~~~~~w~~TGDlg~~d~dG~l~~~GR~~d 470 (570)
T 4gr5_A 398 DDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAG-------PGGERMYRTGDLARRRADGVLEYVGRADD 470 (570)
T ss_dssp CTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCC-------SSCCEEEEEEEEEEECTTSCEEEEEC---
T ss_pred CCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCC-------CCCCEEEeCCCeEEECCCCeEEEEcccCC
Confidence 9876 3567799999999999999999999999998754321 12468999999999999999999999999
Q ss_pred cEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEE
Q 003331 172 TIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVF 251 (829)
Q Consensus 172 ~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~ 251 (829)
+||++|+||+|.|||++|.+||.|.+|+|++.++...++.+++++++..... ....++|+++++++||.|++|..+++
T Consensus 471 ~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~ 548 (570)
T 4gr5_A 471 QVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVP 548 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEE
Confidence 9999999999999999999999999999999888777788899988764321 22346899999999999999999999
Q ss_pred eCcccCCCCCCcchhhhccc
Q 003331 252 MDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 252 ~~~lP~t~~GKi~r~~l~~~ 271 (829)
+++||+|++|||+|++|++.
T Consensus 549 v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 549 VDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp --------------------
T ss_pred cccCCCCCCcCcchHhhhcc
Confidence 99999999999999999864
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-38 Score=349.75 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=199.3
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+ +..++|.||+||++ .+. ..+ .....++|.|.+++++++
T Consensus 268 ~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~-~~~-~~~----------~~~~~~~g~p~~~~~~~i 334 (504)
T 1t5h_X 268 SLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAM-NSL-YMR----------QPKTGTEMAPGFFSEVRI 334 (504)
T ss_dssp CCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTE-EEE-EEE----------SCSSSSEEBCCTTCCEEE
T ss_pred cccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccc-ccc-ccc----------CCCCCccccCCCCCceeE
Confidence 34689999999999999999999999998 57899999999983 222 111 114567899999999999
Q ss_pred ecCCC------CCCCCCeEEEc-cccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 94 VESDT------VKPDEGEIYAG-GLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 94 ~d~~~------~~~~~Gel~i~-g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|.++ +.++.|||+|+ |+.++.||+++|+.|.+.|. ++||+|||+|++++||.|+|+
T Consensus 335 ~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~----------------~g~~~TGDlg~~~~dG~l~~~ 398 (504)
T 1t5h_X 335 VRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQ----------------DGWYRTSDVAVWTPEGTVRIL 398 (504)
T ss_dssp ECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEEE
T ss_pred EeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhc----------------CCccccCcEEEECCCceEEEe
Confidence 98654 35678999999 99999999999999998882 479999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~ 245 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++.+.... .++|++++++ +||.|++
T Consensus 399 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~ 475 (504)
T 1t5h_X 399 GRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKR 475 (504)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGS
T ss_pred CcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCccccc
Confidence 99999999999999999999999999999999999999888888999999987654322 3678999998 9999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhcccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSAST 272 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~ 272 (829)
|+.++++++||+|++|||+|++|++.+
T Consensus 476 P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 476 PKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp CSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred ceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 999999999999999999999998754
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=359.71 Aligned_cols=242 Identities=23% Similarity=0.314 Sum_probs=202.3
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++++++.+.++ +++++|.||+||++..++...... .......++|+|+++++++
T Consensus 381 ~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~gs~G~p~~g~~v~ 454 (663)
T 1ry2_A 381 HSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG------VTPMKPGSASFPFFGIDAV 454 (663)
T ss_dssp CCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT------CCCCCTTCCCEECTTCCEE
T ss_pred CCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC------CcccCCCccccCcCCCeEE
Confidence 46899999999999999999999999874 389999999999987655422100 0123567899999999999
Q ss_pred EecC-CCC---C-CCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 93 LVES-DTV---K-PDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 93 i~d~-~~~---~-~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
|+|+ ++. . ++.|||+|+| |++++|||++|+.+.+.|... ..+||+|||+|++++||+++|
T Consensus 455 i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~-------------~~g~y~TGDlg~~d~dG~l~i 521 (663)
T 1ry2_A 455 VLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNP-------------YPGYYFTGDGAAKDKDGYIWI 521 (663)
T ss_dssp EECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSS-------------STTSEEEEEEEEECTTCCEEE
T ss_pred EEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcC-------------CCCEEEcCCEEEEcCCCCEEE
Confidence 9987 553 2 5679999999 589999999998777666421 257999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCC---c-hH---HHHHHHHHHHHh
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKT---S-SE---IFLSSIKSWVSS 238 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~---~-~~---~~~~~l~~~l~~ 238 (829)
+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++++.. . .+ .+.++|++++++
T Consensus 522 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 601 (663)
T 1ry2_A 522 LGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRK 601 (663)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHH
T ss_pred EeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988777788999999876543 1 11 346789999999
Q ss_pred cCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 239 KLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 239 ~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
.||.|++|..++++++||+|++|||+|++|++.+...
T Consensus 602 ~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 602 DIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred hCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 9999999999999999999999999999999887653
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=342.63 Aligned_cols=223 Identities=23% Similarity=0.376 Sum_probs=179.6
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++|||++++++.+++.+. +++++|.||+||++..++...... ......++|+|+++++++++|++
T Consensus 274 ~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~G~p~~~~~~~i~d~~ 344 (501)
T 3ipl_A 274 YNLQKILLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEM-------LHARPDTVGMPSANVDVKIKNPN 344 (501)
T ss_dssp TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEEEGGGTEEEEEECHHH-------HHHCTTCCBEECTTCEEEEESCC
T ss_pred CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccccccccccceeecCccc-------cccCCCCCCCCCCCcEEEEecCC
Confidence 389999999999999999999874 789999999999986554322110 01245679999999999999875
Q ss_pred CCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEEECC
Q 003331 98 TVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKING 177 (829)
Q Consensus 98 ~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 177 (829)
+++.|||+|+|+++++||+++|+.+.. | .++||+|||+|+++++|.++|+||.||+||++|
T Consensus 345 --~~~~GEl~v~g~~~~~gY~~~~~~t~~-~----------------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G 405 (501)
T 3ipl_A 345 --KEGHGELMIKGANVMNGYLYPTDLTGT-F----------------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGG 405 (501)
T ss_dssp --SSCCEEEEEESTTSCSCCSBSTTCCCS-E----------------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSS
T ss_pred --CCCccEEEEeccchhhhhCcChhhcch-h----------------cCCceecCCEEEEcCCCeEEEEccccceEEECC
Confidence 567799999999999999999998876 4 257999999999999999999999999999999
Q ss_pred eeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCcccC
Q 003331 178 QRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDSLPM 257 (829)
Q Consensus 178 ~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~ 257 (829)
+||+|.|||++|.+||+|.+|+|++.+++..++.++++++..... ..++|+++++++||.|++|..++++++||+
T Consensus 406 ~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~-----~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 480 (501)
T 3ipl_A 406 ENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI-----SKAQLIAYLSKHLAKYKVPKHFEKVDTLPY 480 (501)
T ss_dssp CEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC-----CHHHHHHHHHHHSCGGGSCSEEEECSSCC-
T ss_pred EEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC-----CHHHHHHHHHhhCccccCCCEEEEecccCC
Confidence 999999999999999999999999999988888888988875432 235789999999999999999999999999
Q ss_pred CCCCCcchhhhccccc
Q 003331 258 TSSGKVDYASLSASTS 273 (829)
Q Consensus 258 t~~GKi~r~~l~~~~~ 273 (829)
|++|||||++|++...
T Consensus 481 t~~GKi~R~~l~~~~~ 496 (501)
T 3ipl_A 481 TSTGKLQRNKLYREGH 496 (501)
T ss_dssp ----------------
T ss_pred CCCCCEeHHHHhhccc
Confidence 9999999999998654
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=343.78 Aligned_cols=226 Identities=28% Similarity=0.440 Sum_probs=193.8
Q ss_pred CCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecCC
Q 003331 18 SSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESD 97 (829)
Q Consensus 18 ~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~ 97 (829)
.+||.+++|||++++++.+++.+.+ +++++|.||+||++..++..... .....++|+|+++++++|+|++
T Consensus 300 ~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~G~p~~~~~~~i~d~~ 369 (529)
T 2v7b_A 300 VAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG---------AVEYGTTGRPVPGYEIELRDEA 369 (529)
T ss_dssp CCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT---------CCCTTSCCEECTTCEEEEECTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC---------CCccCCcccCCCCCEEEEECCC
Confidence 4899999999999999999999987 78999999999996554432111 1245689999999999999977
Q ss_pred C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcEE
Q 003331 98 T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIK 174 (829)
Q Consensus 98 ~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 174 (829)
+ +.++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+++++++|.++|+||.||+||
T Consensus 370 g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~----------------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik 433 (529)
T 2v7b_A 370 GHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL----------------GEWIRSGDKYCRLPNGCYVYAGRSDDMLK 433 (529)
T ss_dssp SCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEE----------------TTEEEEEEEEEECTTSCEEEEEEGGGCBC
T ss_pred CCCCCCCCccEEEEecCCcccccCCChHHHHHhhh----------------cCCcccCceEEECCCccEEEeCccCCeEE
Confidence 6 3567799999999999999999999988883 47999999999999999999999999999
Q ss_pred ECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeEEEeCc
Q 003331 175 INGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRFVFMDS 254 (829)
Q Consensus 175 ~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~~~~~~ 254 (829)
++|+||+|.|||++|.+||+|.+|+|++. +...+..+++++++.......+...++|+++++++||.|++|..++++++
T Consensus 434 ~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~ 512 (529)
T 2v7b_A 434 VSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDD 512 (529)
T ss_dssp ----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESC
T ss_pred ECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEecc
Confidence 99999999999999999999999999998 55566788999998765432333456899999999999999999999999
Q ss_pred ccCCCCCCcchhhhcc
Q 003331 255 LPMTSSGKVDYASLSA 270 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~ 270 (829)
||+|++||++|++|++
T Consensus 513 lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 513 LPKTATGKIQRFKLRE 528 (529)
T ss_dssp CCBCTTSCBCHHHHHC
T ss_pred CCCCCccchhHHhHhh
Confidence 9999999999999975
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=352.11 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=165.6
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccc--cCCCCccccccccCCcEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILE--MSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~--~~~~~~~~~G~p~~~~~~~ 92 (829)
.++++||.+++|||++++++.+++ +.+ +++++|.||+||++..++............ .......++|+|+++++++
T Consensus 290 ~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 367 (541)
T 1v25_A 290 HRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 367 (541)
T ss_dssp CCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred CcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEE
Confidence 467899999999999999999999 555 889999999999987766432211000000 0001346899999999999
Q ss_pred EecCCCCC----C-CCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 93 LVESDTVK----P-DEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 93 i~d~~~~~----~-~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
|+|+++.+ + ..|||+|+|++++.||+++|+.|++.|.. ++||+|||+|+++++|.|+|+|
T Consensus 368 i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~---------------~g~~~TGDlg~~d~dG~l~~~G 432 (541)
T 1v25_A 368 VADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP---------------DGFFRTGDIAVWDEEGYVEIKD 432 (541)
T ss_dssp EECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT---------------TSCEEEEEEEEECTTCCEEEEE
T ss_pred EECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC---------------CCCeEcCCEEEEcCCceEEEee
Confidence 99987632 2 46999999999999999999999988842 5799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIP 246 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p 246 (829)
|+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++... ....+++++++++ +||.|++|
T Consensus 433 R~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~----~~~~~~l~~~~~~~~L~~~~~P 508 (541)
T 1v25_A 433 RLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGE----KPTPEELNEHLLKAGFAKWQLP 508 (541)
T ss_dssp ESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------CCCTTTSC
T ss_pred cccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCC----CCCHHHHHHHHHhccCccccCC
Confidence 999999999999999999999999999999999999988777888999887621 1223578888888 89999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhcccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
..++++++||+|++|||+|++|++.+..
T Consensus 509 ~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 509 DAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp SBC--------------CCTTHHHHSTT
T ss_pred cEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 9999999999999999999999987653
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=351.94 Aligned_cols=230 Identities=22% Similarity=0.349 Sum_probs=111.3
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIV 92 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 92 (829)
....+++||.++.+|++ ++.+.+.+.+|+++++|.||+||++++++...... ...++|+|+++++++
T Consensus 267 ~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~G~p~~~~~~~ 333 (509)
T 3ivr_A 267 APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRD----------RPKSAGRPLFWRTVA 333 (509)
T ss_dssp CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGG----------STTSCCEECTTCEEE
T ss_pred cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCcccc----------CCCcccccCCCcEEE
Confidence 45668899999999997 88899999999999999999999998776543221 233589999999999
Q ss_pred EecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 93 LVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 93 i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
|+|+++ ++++.|||+|+|++++.||+++|+.|.+.|. ++||+|||+|+++++|.++|+||.
T Consensus 334 i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~----------------~g~~~TGDl~~~~~dG~l~~~GR~ 397 (509)
T 3ivr_A 334 VVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR----------------NGWHHTGDMGRFDADGYLFYAGRA 397 (509)
T ss_dssp EECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTG----------------GGSEEEEEEEEECTTSCEEEEEEC
T ss_pred EECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhh----------------cCCcccccEEEECCCceEEEeCCC
Confidence 999876 3567899999999999999999999998883 579999999999999999999999
Q ss_pred --CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCC
Q 003331 170 --DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247 (829)
Q Consensus 170 --dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~ 247 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.++.. ...++|+++++++||.|++|.
T Consensus 398 d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~~l~~~L~~~~~P~ 474 (509)
T 3ivr_A 398 PEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES---IAADALAEFVASLIARYKKPK 474 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC---CCHHHHHHHHHhhCcccCCCc
Confidence 999999999999999999999999999999999988877788889988775432 234689999999999999999
Q ss_pred eEEEeCcccCCCCCCcchhhhcccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.++++++||+|++|||||++|++.+..
T Consensus 475 ~i~~v~~lP~t~~GKidr~~Lr~~~~~ 501 (509)
T 3ivr_A 475 HVVFVEALPKDAKGAIDRAAVKTAHGQ 501 (509)
T ss_dssp ---------------------------
T ss_pred EEEEecCCCCCCCCCccHHHHHHHHhh
Confidence 999999999999999999999987654
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=353.17 Aligned_cols=234 Identities=22% Similarity=0.268 Sum_probs=110.5
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.++...++|.||+||+++.++..... .....++|+|+++++++|
T Consensus 303 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~---------~~~~~~vG~~~~~~~~~i 373 (550)
T 3rix_A 303 KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---------DDKPGAVGKVVPFFEAKV 373 (550)
T ss_dssp GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT---------CCCTTEEEEECTTCEEEE
T ss_pred ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC---------CCCCCCcccccCCcEEEE
Confidence 34689999999999999999999999998655699999999999776643221 225678999999999999
Q ss_pred ecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++. ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||.
T Consensus 374 ~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 438 (550)
T 3rix_A 374 VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID---------------KDGWLHSGDIAYWDEDEHFFIVDRL 438 (550)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEC---
T ss_pred EeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcC---------------CCCCeecCcEEEEeCCceEEEEecc
Confidence 98543 4577899999999999999999999988773 3679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCC-cCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAM-IPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~p~~ 248 (829)
||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++++++++.+... ..++++++++++++.++ +|..
T Consensus 439 dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~---~~~~l~~~~~~~l~~~~~~~~~ 515 (550)
T 3rix_A 439 KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTM---TEKEIVDYVASQVTTAKKLRGG 515 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCC---CHHHHHHHHHHhcccccccCCc
Confidence 9999999999999999999999999999999999888888888999988765332 23678899999999885 5557
Q ss_pred EEEeCcccCCCCCCcchhhhcccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
++++++||+|++|||||++|++++..
T Consensus 516 i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 516 VVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp --------------------------
T ss_pred eEEEeecCCCCCcceeHHHHHHHHHh
Confidence 99999999999999999999987653
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=349.12 Aligned_cols=248 Identities=24% Similarity=0.365 Sum_probs=117.0
Q ss_pred cchhhhhcc--CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccc
Q 003331 4 VLPALQSQH--NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVP 81 (829)
Q Consensus 4 l~~~l~~~~--~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (829)
++|++.+.. ...++++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.++...... .....+
T Consensus 278 ~~P~~l~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~--------~~~~~~ 348 (562)
T 3ite_A 278 IVPSLLDQTGLVPEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNVYGPTEVTIGCSAGRILP--------DSDTRC 348 (562)
T ss_dssp ECHHHHHHHTCCGGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEEECCGGGCSCSEEEECCT--------TSCTTE
T ss_pred cCHHHHhhcccCccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEeeccchheeeeeeeeecC--------CCCCcc
Confidence 455555432 345688999999999999999999998865 789999999999987766543221 124567
Q ss_pred cccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEE
Q 003331 82 IGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARR 157 (829)
Q Consensus 82 ~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~ 157 (829)
+|+|+++++++++|++. ++++.|||+|+|++++.|||++|+.+...|.. +++||+|||+|++
T Consensus 349 ~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~--------------g~~w~~TGDlg~~ 414 (562)
T 3ite_A 349 IGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDIN--------------GRKMYRTGDIVRM 414 (562)
T ss_dssp EEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEET--------------TEEEEEEEEEEEE
T ss_pred ccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCC--------------CCEEEecCCEEEE
Confidence 99999999999998653 45778999999999999999999988755432 4679999999999
Q ss_pred ccCCcEEEEeecCCcEEECCeeeChHHHHHHHhCC-CCeeEEEEEEeecCCceEEEEEEEEecCCCCc----------hH
Q 003331 158 IQSGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH-PDVVDTAVVSHKHQGELVILVAFIVLKEKKTS----------SE 226 (829)
Q Consensus 158 ~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~-~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~----------~~ 226 (829)
++||+|+|+||+||+||++|+||+|.|||++|.++ +.+.+++|+..+++..++..++.++....... .+
T Consensus 415 d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 494 (562)
T 3ite_A 415 DADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYK 494 (562)
T ss_dssp CTTSCEEEEEEC--------------------------------------------------------------------
T ss_pred cCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchh
Confidence 99999999999999999999999999999999998 77778888877776555544444443322111 11
Q ss_pred HHHHHHHHHHHhcCCCCCcCCeEEEeCcccCC-CCCCcchhhhcccccc
Q 003331 227 IFLSSIKSWVSSKLPLAMIPNRFVFMDSLPMT-SSGKVDYASLSASTSF 274 (829)
Q Consensus 227 ~~~~~l~~~l~~~l~~~~~p~~~~~~~~lP~t-~~GKi~r~~l~~~~~~ 274 (829)
...++|+++++++||.|++|+.++++++||+| ++|||||++|++++..
T Consensus 495 ~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 495 EINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHT 543 (562)
T ss_dssp -------------------------------------------------
T ss_pred hHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhc
Confidence 23458999999999999999999999999998 8999999999987753
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=353.52 Aligned_cols=231 Identities=25% Similarity=0.385 Sum_probs=111.9
Q ss_pred CCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCcccccccc-CCcEEEE
Q 003331 15 HVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPI-SNCDIVL 93 (829)
Q Consensus 15 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i 93 (829)
.++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++..... ......++|+|+ ++++++|
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~--------~~~~~~~~G~p~~~~~~~~i 374 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDS--------DEQIFTTQGRPISSDDEIKI 374 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSC--------HHHHHHCCCEESCTTCEEEE
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCc--------hhhccCCCceecCCCcEEEE
Confidence 3478999999999999999999999988 78999999999987544322110 011346789996 8999999
Q ss_pred ecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecC
Q 003331 94 VESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKD 170 (829)
Q Consensus 94 ~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~d 170 (829)
+|+++ ++++.|||+|+|++++.||+++|+.|.+.|. .++||+|||+|++++||.++|+||.|
T Consensus 375 ~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~---------------~~g~~~TGDlg~~~~dG~l~~~GR~d 439 (544)
T 3o83_A 375 VDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFD---------------EDNYYYSGDLVQRTPDGNLRVVGRIK 439 (544)
T ss_dssp ECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBC---------------TTCCEEEEEEEEECTTSCEEEEEEEC
T ss_pred ECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCC---------------CCCCeEcCCEEEEcCCCCEEEEeecC
Confidence 99766 4577899999999999999999999999884 36899999999999999999999999
Q ss_pred CcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHh-cCCCCCcCCeE
Q 003331 171 RTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSS-KLPLAMIPNRF 249 (829)
Q Consensus 171 d~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~~ 249 (829)
|+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.+++++++.+.. ....++++++++ .||.|++|..+
T Consensus 440 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~----~~~~~l~~~~~~~~l~~~~~P~~i 515 (544)
T 3o83_A 440 DQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE----LKAVVLRRHLMELGIAQYKLPDQI 515 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCC----CCHHHHHHHHHhCCCCcccCCcEE
Confidence 9999999999999999999999999999999998887788889999876532 223578888888 79999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++++.
T Consensus 516 ~~v~~lP~t~~GKi~r~~L~~~~~ 539 (544)
T 3o83_A 516 KLIESLPLTAVGKVDKKQLRSILN 539 (544)
T ss_dssp ------------------------
T ss_pred EEeccCCCCCCCCCcHHHHHHHHh
Confidence 999999999999999999998764
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=370.28 Aligned_cols=241 Identities=26% Similarity=0.336 Sum_probs=117.8
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+.+|+++++|.||+||++.+++....... ........++|+|+++++++|
T Consensus 340 ~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~----~~~~~~~~~~G~p~~~~~~~i 415 (979)
T 3tsy_A 340 KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK----EPFPVKSGACGTVVRNAEMKI 415 (979)
T ss_dssp TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSS----SCCCCCTTCCCEECSSCEEEE
T ss_pred CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCC----CccccCCCCcCcccCCcEEEE
Confidence 3468999999999999999999999999999999999999999876654321110 011235678999999999999
Q ss_pred ecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++. ++++.|||+|+|+++++||+++|+.|.+.|. .++||+|||+|++++||.|+|+||+
T Consensus 416 ~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~---------------~~g~~~TGDl~~~~~dG~l~~~GR~ 480 (979)
T 3tsy_A 416 VDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETID---------------KDGWLHTGDIGLIDDDDELFIVDRL 480 (979)
T ss_dssp ECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEEEES
T ss_pred EeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhcc---------------CCCcEEcCCEEEEcCCceEEEecCC
Confidence 98543 4567899999999999999999999998884 3679999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
||+||++|+||+|.|||++|.+||.|.+++|++.+++..++.++++++...... ...++|+++++++||.|++|..+
T Consensus 481 dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~---~~~~~l~~~l~~~l~~~~~p~~i 557 (979)
T 3tsy_A 481 KELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSE---LSEDDVKQFVSKQVVFYKRINKV 557 (979)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCC---CCHHHHHHHHHHhcccccCCeEE
Confidence 999999999999999999999999999999999888777788899998765432 22367999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhcccccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTSFTI 276 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~~~~ 276 (829)
+++++||+|++|||||++|++.+....
T Consensus 558 ~~v~~lP~t~~GKi~r~~L~~~~~~~~ 584 (979)
T 3tsy_A 558 FFTESIPKAPSGKILRKDLRAKLANGL 584 (979)
T ss_dssp ---------------------------
T ss_pred EEeCCcCcCCCCCeeHHHHHHHHHhhc
Confidence 999999999999999999998776443
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=293.82 Aligned_cols=319 Identities=18% Similarity=0.339 Sum_probs=254.5
Q ss_pred cccccccccccccccc-----ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC----------ceeeceEE
Q 003331 460 GFIQELWKVHMESCVD-----ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG----------RIECSAAV 524 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~~-----~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~----------~~~~~~~~ 524 (829)
..++++|+++++.... ++|++ .++.||+++.++.|+++|++||+++|++.... .+. ..+
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v----~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~ 99 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL----ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS--GGV 99 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEE--EEE
T ss_pred CcceEEeEEecCCCccccceeeccEE----ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccc--cCc
Confidence 4678999999986643 58888 68999999999999999999999999988742 232 233
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc-
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF- 603 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~- 603 (829)
..+++.+|+++.++.|+++|++||+++|++.....+...|++.+ +.+|+++.++.|+++|+++|+.+|++.......
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~--~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSD--GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS 177 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEET--TEEEEECTTSEEEEEETTTCCEEEEEECCC----
T ss_pred eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEEC--CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee
Confidence 33557999999999999999999999999998877777777764 799999999999999999999999998765443
Q ss_pred ----ccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCCEEEEEeeCCeEEE
Q 003331 604 ----GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 604 ----~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
+.|++.+ +.+|+++.+|.++++|+.+ |+.+|+.....+.. ....+...++.+|+++.++.+++
T Consensus 178 ~~~~~~~~~~~--~~v~~g~~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 178 LRGESAPTTAF--GAAVVGGDNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTA 253 (376)
T ss_dssp -CCCCCCEEET--TEEEECCTTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEE
T ss_pred ecCCCCcEEEC--CEEEEEcCCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEE
Confidence 6677765 8999999999999999988 99999987653211 11122235789999999999999
Q ss_pred Ec-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe-cCCcccccccccccccccccccc
Q 003331 671 LD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS-VGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
+| .+|+++|+...... ..+ ...++.+|+++.+|.|+++|.++|+++|+.. ........+..
T Consensus 254 ~d~~tG~~~w~~~~~~~--~~~---~~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~------------ 316 (376)
T 3q7m_A 254 LDLRSGQIMWKRELGSV--NDF---IVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL------------ 316 (376)
T ss_dssp EETTTCCEEEEECCCCE--EEE---EEETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE------------
T ss_pred EECCCCcEEeeccCCCC--CCc---eEECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE------------
Confidence 99 89999999876542 222 2347899999999999999999999999987 33333333322
Q ss_pred CCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceEECCEEEEeeeCCeEEEEec
Q 003331 749 SIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVMIGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 749 ~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~l~vg~~~g~l~~~d~ 821 (829)
.++.+|+++.+|.|+++|..++ +..+.+.+ .+.+.++|++.++.||+++.+|.||+||.
T Consensus 317 -~~~~l~v~~~~g~l~~~d~~tG-------------~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 317 -YNGNLVVGDSEGYLHWINVEDG-------------RFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp -ETTEEEEECTTSEEEEEETTTC-------------CEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEEC
T ss_pred -ECCEEEEEeCCCeEEEEECCCC-------------cEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEeC
Confidence 2789999999999999999876 55666666 45677789999999999999999999974
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=326.61 Aligned_cols=250 Identities=18% Similarity=0.158 Sum_probs=191.8
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCC-----CceEEeecCccccccccccccccCCCcc----------------
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP-----NISILNLYGSTEVSGDCTYFDCKRLPSI---------------- 71 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~-----~~~i~~~YG~TE~~~~~~~~~~~~~~~~---------------- 71 (829)
...++++||.+++|||++++++.+++.+.++ +++++|.||+||+++.++..........
T Consensus 284 ~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (590)
T 3kxw_A 284 EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFA 363 (590)
T ss_dssp TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBC
T ss_pred cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeec
Confidence 3456899999999999999999999998863 4589999999999987765332110000
Q ss_pred --cccCCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCC
Q 003331 72 --LEMSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGS 145 (829)
Q Consensus 72 --~~~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 145 (829)
.........++|+|+++ ++|+|++. ++++.|||+|+|++++.||+++|+.|++.|...+... ..+
T Consensus 364 ~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~-------~~g 434 (590)
T 3kxw_A 364 DDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDD-------ERS 434 (590)
T ss_dssp CTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC----------
T ss_pred cCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCC-------CCC
Confidence 00112245789999998 77788763 3567799999999999999999999999997643221 113
Q ss_pred cceEecCceEEEccCCcEEEEeecCCcEEECCeeeChHHHHHHH-hCCCCee--EEEEEEeecCCceEEEEEEEEecCCC
Q 003331 146 QTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEHTL-RGHPDVV--DTAVVSHKHQGELVILVAFIVLKEKK 222 (829)
Q Consensus 146 ~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l-~~~~~v~--~~~v~~~~~~~~~~~~~~~v~~~~~~ 222 (829)
.+||+|||+|+++ +|.|+|+||+||+||++|+||+|.|||++| ..+|.|. +|+|++.+++. +..+++++++....
T Consensus 435 ~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~ 512 (590)
T 3kxw_A 435 AIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRF 512 (590)
T ss_dssp CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTT
T ss_pred CcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccc
Confidence 4599999999998 999999999999999999999999999999 8899998 78888887765 56778888877653
Q ss_pred CchHHHHHHHHHHHHhcCCC-CCcCC-eE--EEeCcccCCCCCCcchhhhcccccc
Q 003331 223 TSSEIFLSSIKSWVSSKLPL-AMIPN-RF--VFMDSLPMTSSGKVDYASLSASTSF 274 (829)
Q Consensus 223 ~~~~~~~~~l~~~l~~~l~~-~~~p~-~~--~~~~~lP~t~~GKi~r~~l~~~~~~ 274 (829)
.. +...+++++++++.++. +++|. .+ +.+++||+|++|||+|++|++.+..
T Consensus 513 ~~-~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 513 MD-DVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred cc-chhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 21 22345566666666664 56664 34 4447999999999999999987653
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=295.76 Aligned_cols=206 Identities=17% Similarity=0.196 Sum_probs=172.4
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++++.+++.+. +++++|.||+||++..++...... .....+|.|.|++.+.+
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~~~~~~~---------~~~g~~~~~~pgv~~~~ 212 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVALKALNG---------PEASELYVFLPGIQYGV 212 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEEEEECSS---------TTCCSCEEECTTCEEEE
T ss_pred cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceeecccccc---------cccceeeccCCCeEEEe
Confidence 4568899999999999999999999875 789999999999987776543321 13456889999998887
Q ss_pred ecCCCCCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeecCCcE
Q 003331 94 VESDTVKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173 (829)
Q Consensus 94 ~d~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~dd~i 173 (829)
.+ .|||+++|+.. .++||+|||+|+++++| ++|+||+||+|
T Consensus 213 ~~-------~Gel~~~g~~~-------------------------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~I 253 (358)
T 4gs5_A 213 DE-------RGCLHISGAVT-------------------------------NGQTVQTNDLVEIHGNA-FQWIGRADNVI 253 (358)
T ss_dssp CT-------TSEEEEESGGG-------------------------------TTCCEEEEEEEEECSSE-EEEEEEGGGEE
T ss_pred cC-------cCceEEecccc-------------------------------cCcceecCCccccccCc-eEEcccccCeE
Confidence 54 39999987521 25799999999999888 77889999999
Q ss_pred EECCeeeChHHHHHHH---hCCCCeeEEEEE-EeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcCCeE
Q 003331 174 KINGQRMALEEIEHTL---RGHPDVVDTAVV-SHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPNRF 249 (829)
Q Consensus 174 k~~G~~i~~~~iE~~l---~~~~~v~~~~v~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~~ 249 (829)
|++|+||+|.|||++| ..||.|.+|+|+ ..+++..++.++++++.... +...++|+++++++||.|++|+.+
T Consensus 254 k~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~----~~~~~~l~~~l~~~L~~~~~P~~i 329 (358)
T 4gs5_A 254 NSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP----EALTERLTAEIRSRVSTYENPKHI 329 (358)
T ss_dssp EETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC----HHHHHHHHHHHHHHSCGGGSCSCE
T ss_pred EECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC----CcCHHHHHHHHHhhCCCCCCceEE
Confidence 9999999999999877 468999998776 56777778888888875543 344568999999999999999999
Q ss_pred EEeCcccCCCCCCcchhhhccccc
Q 003331 250 VFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 250 ~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
+++++||+|++|||||++|++.+.
T Consensus 330 ~~v~~lP~t~~GKi~R~~L~~~l~ 353 (358)
T 4gs5_A 330 YFAKAFAKTQTDKIDKRATFQKLS 353 (358)
T ss_dssp EEESSCCBCTTSCBCHHHHHHHTC
T ss_pred EEECCcCCCCCCChhHHHHHHHhh
Confidence 999999999999999999987654
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-30 Score=280.12 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=166.5
Q ss_pred CCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEec
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVE 95 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 95 (829)
.+++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.++...+.. ...+|.|.+++.++|+|
T Consensus 204 ~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~~~~~~~~~~~-----------~~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 RETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAFECQE-----------QNGMHFWEDCYLVEIID 271 (436)
T ss_dssp TSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEEGGGTEEEEEEECTT-----------CSSEEECTTTEEEEEEC
T ss_pred ccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCcchhhcCCeeEEecCC-----------CCeeEEccCceEEEEEE
Confidence 478999999999999999999999988 899999999999965534333321 12367788899999998
Q ss_pred C-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCC------c---
Q 003331 96 S-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSG------D--- 162 (829)
Q Consensus 96 ~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G------~--- 162 (829)
+ ++ ++++.|||+|+|+ +.+.| ..+||+|||+|+++++| .
T Consensus 272 ~~~g~~~~~g~~Gel~v~~~------------~~~~~----------------~~~~y~TGDl~~~~~~gc~cG~~~~~i 323 (436)
T 3qov_A 272 PETGEPVPEGEIGELVLTTL------------DREMM----------------PLIRYRTRDLTRILPGKCPCGRTHLRI 323 (436)
T ss_dssp TTTCSBCSTTCCEEEEEEES------------SCCSS----------------CCCSEEEEEEECEECSCCTTCCCSCEE
T ss_pred CCCCCCCCCCCceEEEEecc------------CcCCc----------------eEEEEEcCCEEEEcCCCCCCCCCcccc
Confidence 4 44 4567899999883 22222 25789999999999998 5
Q ss_pred EEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCc-hHHHHHHHHHHHHhcCC
Q 003331 163 LVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTS-SEIFLSSIKSWVSSKLP 241 (829)
Q Consensus 163 l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~~l~ 241 (829)
++|+||.||+||++|+||+|.+||++|.+||.|.+++|++.+++..+..++++|++. +... .....+++++++++.|+
T Consensus 324 l~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~ 402 (436)
T 3qov_A 324 DRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLK 402 (436)
T ss_dssp CCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999988877788899999988 4322 22234567777777888
Q ss_pred CC-CcCCeEEEeC--cccCCCCCCcchhhhc
Q 003331 242 LA-MIPNRFVFMD--SLPMTSSGKVDYASLS 269 (829)
Q Consensus 242 ~~-~~p~~~~~~~--~lP~t~~GKi~r~~l~ 269 (829)
.+ ++|..+.+++ +||+|+ ||++|...+
T Consensus 403 ~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~ 432 (436)
T 3qov_A 403 DEILVTPKVKLVKKGSLPQSE-GKAVRVKDL 432 (436)
T ss_dssp HHHSSCCEEEEECTTCCC--------CEEEC
T ss_pred HhcCCceEEEEeCCCcccCcC-CcceEEEec
Confidence 77 8999999999 999999 999987554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=265.92 Aligned_cols=323 Identities=17% Similarity=0.266 Sum_probs=243.3
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCce-----------eece
Q 003331 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRI-----------ECSA 522 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~-----------~~~~ 522 (829)
....++++|+++++.. +.++|++ .++.||+++. ++.|+++|+ .||+++|+++..... ...+
T Consensus 36 ~~~~l~~~W~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 111 (571)
T 2ad6_A 36 NVKNVKAAWSFSTGVLNGHEGAPLV----IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGL 111 (571)
T ss_dssp TGGGCEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCC
T ss_pred cccCccEEEEEECCCCCCcccccEE----ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccccc
Confidence 3456889999999754 6789998 5889999998 899999999 999999998765421 1123
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCe
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYR 591 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~ 591 (829)
.+ +++.||+++.++.|+++|++||+++|++.... .+.++|++.+ +.||+++. ++.|+++|++||+
T Consensus 112 ~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 112 AY--GAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EE--ECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC--CEEEEEecCCccCCCCEEEEEECCCCc
Confidence 33 45799999999999999999999999998765 4566777764 78999876 6899999999999
Q ss_pred EEEeeccCCcc--------------------------------------cccceeecCCCEEEEEecC------------
Q 003331 592 CVYKLPCGGSI--------------------------------------FGSPAIDEVHDVLYVASTS------------ 621 (829)
Q Consensus 592 ~~w~~~~~~~~--------------------------------------~~~~~~~~~~~~l~v~t~~------------ 621 (829)
.+|++...... +..+.++.+.+.||+++.+
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 99998764321 1235566667899998853
Q ss_pred ----CeEEEEEccCCCceEEEeeccCCc------ceeeeeeee---cCC---EEEEEeeCCeEEEEc-CCCCEEEEeecC
Q 003331 622 ----GRLTAISVKALPFHTLWLHELEVP------AFASLCITS---ANR---HVICCLVDGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 622 ----g~l~~~~~~~~~g~~~w~~~~~~~------~~~s~~~~~---~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~ 684 (829)
+.|+++|+++ |+.+|+++.... ...++.+.. +++ .+++++.+|.++++| .+|+++|+.+..
T Consensus 268 ~~y~~~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~ 345 (571)
T 2ad6_A 268 NKWTMTIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVD 345 (571)
T ss_dssp CTTTTEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESS
T ss_pred ceeEEEEEEEecCC--CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeeccc
Confidence 3599999998 999999976421 123343332 232 467788899999999 999999998754
Q ss_pred C--------------cee--------------ecCcc---------ccc-CCCeEEEEee--------------------
Q 003331 685 G--------------PIF--------------AGPCT---------SFA-LPSQVLICSR-------------------- 706 (829)
Q Consensus 685 ~--------------~~~--------------~~~~~---------~~~-~~~~i~~~t~-------------------- 706 (829)
. ++. ..|.. ..+ ..+.+|+.+.
T Consensus 346 ~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~ 425 (571)
T 2ad6_A 346 PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFV 425 (571)
T ss_dssp TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCC
T ss_pred CCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccc
Confidence 3 111 11100 111 2356777643
Q ss_pred -----------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 707 -----------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 707 -----------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+|.|+++|..+|+++|+++........+.... ++.+|+++.+|.|+++|.+
T Consensus 426 g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~------------gg~v~~g~~dg~l~a~D~~ 493 (571)
T 2ad6_A 426 GATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK------------GGLVWYATLDGYLKALDNK 493 (571)
T ss_dssp CEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEECTTSEEEEEETT
T ss_pred cccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEEC------------CCEEEEEcCCCeEEEEECC
Confidence 47899999999999999987665444433322 7899999999999999998
Q ss_pred cCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCe
Q 003331 770 LDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~ 815 (829)
+| +.+|++++...+..+|+. .++++|+++.+|.
T Consensus 494 tG-------------~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 494 DG-------------KELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp TC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred CC-------------CEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence 87 778888888888888888 7999999987653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=266.22 Aligned_cols=325 Identities=17% Similarity=0.253 Sum_probs=241.1
Q ss_pred Cccccccccccccccccc----cccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceE
Q 003331 457 NKRGFIQELWKVHMESCV----DASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAA 523 (829)
Q Consensus 457 ~~~~~~~~~W~~~~~~~~----~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~ 523 (829)
.....++++|+++++... .++|++ .++.||+++.++.|+++|+.||+++|++....... ..+.
T Consensus 39 ~n~~~~~~~W~~~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a 114 (582)
T 1flg_A 39 DNVFKLTPAWSYSFGDEKQRGQESQAIV----SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA 114 (582)
T ss_dssp TTGGGCEEEEEEECCTTCCSCCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE
T ss_pred cccCCCcEEEEEECCCccCCcceeccEE----ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE
Confidence 344578899999998643 578988 58899999985569999999999999998764321 1223
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecC--CC--EEEEecc------CCeEEEEEcC
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAP--RQ--LIWCGSH------DHNLYALDFR 588 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~--~~--~i~~gs~------~g~l~~~d~~ 588 (829)
+ .++.||+++.++.|+++|++||+++|++.... .+.++|++.++ ++ .||+++. ++.|+++|++
T Consensus 115 ~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 115 I--YGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp E--ETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 3 45789999999999999999999999988764 34566776642 11 7888864 7899999999
Q ss_pred CCeEEEeeccC-----------------------------------------CcccccceeecCCCEEEEEecC------
Q 003331 589 NYRCVYKLPCG-----------------------------------------GSIFGSPAIDEVHDVLYVASTS------ 621 (829)
Q Consensus 589 tg~~~w~~~~~-----------------------------------------~~~~~~~~~~~~~~~l~v~t~~------ 621 (829)
||+.+|+.... +..+..+.++.+.+.||+++.+
T Consensus 193 tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 193 TGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp TCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCG
T ss_pred CCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccC
Confidence 99999987542 1233456777778999998841
Q ss_pred ------------------CeEEEEEccCCCceEEEeeccCCc------ceeeeeeee----cC---CEEEEEeeCCeEEE
Q 003331 622 ------------------GRLTAISVKALPFHTLWLHELEVP------AFASLCITS----AN---RHVICCLVDGHVVA 670 (829)
Q Consensus 622 ------------------g~l~~~~~~~~~g~~~w~~~~~~~------~~~s~~~~~----~~---~~l~~~~~~g~i~~ 670 (829)
+.|+++|+++ |+.+|+++.... ...++.+.. ++ ..+++++.+|.+++
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~T--G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCC--CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence 5799999998 999999876422 112333332 23 26788889999999
Q ss_pred Ec-CCCCEEEEeecCCc--------------e--------------------eecCcc---------ccc-CCCeEEEEe
Q 003331 671 LD-SSGSIIWRCRTGGP--------------I--------------------FAGPCT---------SFA-LPSQVLICS 705 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~--------------~--------------------~~~~~~---------~~~-~~~~i~~~t 705 (829)
+| .+|+++|++..... + ...|.. ..+ ..+.+|+.+
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 99 99999999876431 0 011110 001 124566654
Q ss_pred e---------------------------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc
Q 003331 706 R---------------------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 706 ~---------------------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
. .|.|++||+.||+++|+.+...+....+... .++
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agg 498 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------------AGN 498 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE------------TTT
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe------------CCC
Confidence 2 5789999999999999998765544333222 288
Q ss_pred EEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003331 753 LVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 753 ~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g 814 (829)
++|+++.+|.|++||.++| +.+|++++++.+..+|+. .++++|++..+|
T Consensus 499 lvf~g~~dg~l~A~D~~tG-------------~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 499 LVFTGTGDGYFKAFDAKSG-------------KELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp EEEEECTTSEEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCcEEEEECCCC-------------CEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 9999999999999999987 788899999888888887 689999986554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-27 Score=262.40 Aligned_cols=324 Identities=15% Similarity=0.221 Sum_probs=239.3
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCce-----------eece
Q 003331 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRI-----------ECSA 522 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~-----------~~~~ 522 (829)
+...++++|+++++.. +.++|++ .+++||+++. ++.|+++|+ .||+++|+++..... ...+
T Consensus 36 nv~~l~~~W~~~~g~~~g~~~tP~v----~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~ 111 (599)
T 1w6s_A 36 NVKQLRPAWTFSTGLLNGHEGAPLV----VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGL 111 (599)
T ss_dssp TGGGEEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCC
T ss_pred ccCCCcEEEEEECCCCCCceeccEE----ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccce
Confidence 4457889999999743 5689998 5889999998 889999999 999999999875431 1123
Q ss_pred EEeeCCcE----EEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEc
Q 003331 523 AVLADFSQ----VVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDF 587 (829)
Q Consensus 523 ~~~~~~~~----v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~ 587 (829)
.+.+.++. ||+++.|+.|+++|++||+++|++.... .+.+.|++.+ +.||+++. ++.|+++|.
T Consensus 112 av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~--g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 112 AYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp EEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEET
T ss_pred EEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC--CEEEEEecccccCCCCeEEEEEC
Confidence 34213455 9999999999999999999999988765 5667777764 78999874 789999999
Q ss_pred CCCeEEEeeccCCc--------------------------------------ccccceeecCCCEEEEEecCC-------
Q 003331 588 RNYRCVYKLPCGGS--------------------------------------IFGSPAIDEVHDVLYVASTSG------- 622 (829)
Q Consensus 588 ~tg~~~w~~~~~~~--------------------------------------~~~~~~~~~~~~~l~v~t~~g------- 622 (829)
+||+.+|++..... .+..+.++.+.+.||+++.++
T Consensus 190 ~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 190 KTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 99999999876432 223456777789999998763
Q ss_pred ---------eEEEEEccCCCceEEEeeccCCcc------eeeeeeee----cC---CEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 623 ---------RLTAISVKALPFHTLWLHELEVPA------FASLCITS----AN---RHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 623 ---------~l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~----~~---~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
.|+++|+++ |+.+|+++..... ..++.+.. ++ ..++.++.+|.++++| .+|+++|
T Consensus 270 r~gd~~y~~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp SCSCCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCCccccceEEEEeCCC--CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 799999998 9999999865321 12333322 23 2466688899999999 9999999
Q ss_pred EeecCC--------------cee--------------ecCc---------cccc-CCCeEEEE-----------------
Q 003331 680 RCRTGG--------------PIF--------------AGPC---------TSFA-LPSQVLIC----------------- 704 (829)
Q Consensus 680 ~~~~~~--------------~~~--------------~~~~---------~~~~-~~~~i~~~----------------- 704 (829)
...... ++. ..|. ...+ ..+.+|+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~ 427 (599)
T 1w6s_A 348 ANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKA 427 (599)
T ss_dssp EEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCT
T ss_pred cccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccC
Confidence 876432 110 0000 0000 11222221
Q ss_pred ----------------e------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 705 ----------------S------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 705 ----------------t------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
+ ..|.|++||+.||+++|+.+...+....+... .++.+|+++.+|.
T Consensus 428 g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agg~vf~gt~dg~ 495 (599)
T 1w6s_A 428 GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT------------AGDLVFYGTLDGY 495 (599)
T ss_dssp TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE------------TTTEEEEECTTSE
T ss_pred CcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe------------cCCEEEEECCCCe
Confidence 1 34789999999999999998664443333222 2889999999999
Q ss_pred EEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003331 763 IHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 763 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g 814 (829)
|++||.++| +.+|+++++..+..+|+. .++++|++...|
T Consensus 496 l~A~D~~tG-------------~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 496 LKARDSDTG-------------DLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp EEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred EEEEECCCC-------------CEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 999999987 778888999888899988 789988876544
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=278.91 Aligned_cols=215 Identities=15% Similarity=0.217 Sum_probs=170.1
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+++||.+++|||++++++.+++.+.+ +++++|.||+||+++.+....+.. .....+.|.+++.++|+|+
T Consensus 211 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~----------~~~g~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 211 ESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVACECVE----------TKDGPVIWEDHFYPEIIDP 279 (443)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEETTTTEEEEEEECTT----------TCCSEEECTTTEEEEEECT
T ss_pred cCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCchhhcCCeEEeccCC----------CCCceEEccCCeEEEEEcC
Confidence 57999999999999999999999888 789999999999854322222221 1112455778999999985
Q ss_pred C-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC-CcE-----EEE
Q 003331 97 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS-GDL-----VFL 166 (829)
Q Consensus 97 ~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~-G~l-----~~~ 166 (829)
+ + +.++.|||+|+|. +.+.| ..+||+|||+|+++++ |.+ +++
T Consensus 280 ~~g~~~~~G~~Gel~v~~~------------t~~~~----------------p~~~y~TGDl~~~~~~cG~~~~~l~~i~ 331 (443)
T 2y4o_A 280 VTGEVLPDGSQGELVFTSL------------TKEAM----------------PVIRYRTRDLTALLPPTARAMRRLAKIT 331 (443)
T ss_dssp TTCCBCCTTCCEEEEEEES------------SCSSS----------------CCSSEEEEEEECEECCSSSSSCEECCCC
T ss_pred CCCCCCCCCCceEEEEeCC------------CcccC----------------hhheeecCCEEEEcCCCCCCccccCccc
Confidence 4 3 3567899999873 22223 2468999999999999 987 899
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecC--CCCchHHHHHHHHHHHHhcCCCCC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKE--KKTSSEIFLSSIKSWVSSKLPLAM 244 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~l~~~l~~~~ 244 (829)
||.||+||++|++|+|.+||++|.+||.|.+++++..+++..+..+++++++.+ +........+++++++++.|+.++
T Consensus 332 GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 411 (443)
T 2y4o_A 332 GRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMV 411 (443)
T ss_dssp EESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888777666678889998865 221122334678888888888774
Q ss_pred -cCCeEEEe--CcccCCCCCCcchhhhcc
Q 003331 245 -IPNRFVFM--DSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 245 -~p~~~~~~--~~lP~t~~GKi~r~~l~~ 270 (829)
+|..+.++ ++||+|++||++|+..++
T Consensus 412 ~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 412 GVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp CCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred CCceEEEEeCCCcccCccCCcceEEEecc
Confidence 88888877 599999999999987654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=253.27 Aligned_cols=284 Identities=17% Similarity=0.334 Sum_probs=225.2
Q ss_pred CCCcEEEEEEcCCce-----eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC----------Ceeeeeeeeec
Q 003331 504 KRSSVLWEIKLEGRI-----ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC----------GEVKCQPVVDA 568 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~-----~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~----------~~~~~~~~~~~ 568 (829)
.++++.|+++.+... ..++++ .++.||+++.++.|+++|++||+++|++... ..+...+.+.
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v--~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~- 102 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPAL--ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS- 102 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE-
T ss_pred CcceEEeEEecCCCccccceeeccEE--ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe-
Confidence 357888998876432 224555 3568999999999999999999999998873 2344555554
Q ss_pred CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF- 647 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~- 647 (829)
++.+|+++.++.|+++|.++|+.+|++.......+.|++.+ +.+|+++.++.|+++|+++ |+.+|++....+..
T Consensus 103 -~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~--~~v~v~~~~g~l~~~d~~t--G~~~W~~~~~~~~~~ 177 (376)
T 3q7m_A 103 -GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSD--GLVLIHTSNGQLQALNEAD--GAVKWTVNLDMPSLS 177 (376)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEET--TEEEEECTTSEEEEEETTT--CCEEEEEECCC----
T ss_pred -CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEEC--CEEEEEcCCCeEEEEECCC--CcEEEEEeCCCCcee
Confidence 48999999999999999999999999988877778888875 8999999999999999988 99999998765443
Q ss_pred ----eeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----------eeecCcccccCCCeEEEEeeCCeEE
Q 003331 648 ----ASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----------IFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 648 ----~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
.++. ..++.+|+++.++.++++| .+|+.+|+.....+ +...| ...++.+|+++.+|.++
T Consensus 178 ~~~~~~~~--~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 178 LRGESAPT--TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP---VVVNGVVFALAYNGNLT 252 (376)
T ss_dssp -CCCCCCE--EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC---EEETTEEEEECTTSCEE
T ss_pred ecCCCCcE--EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc---EEECCEEEEEecCcEEE
Confidence 2233 3478999999999999999 89999999886543 22333 23468999999999999
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE 791 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 791 (829)
++|.++|+++|+...... ..+. ..++.+|+++.+|.|+++|.+++ +..|...
T Consensus 253 ~~d~~tG~~~w~~~~~~~--~~~~-------------~~~~~l~~~~~~g~l~~~d~~tG-------------~~~w~~~ 304 (376)
T 3q7m_A 253 ALDLRSGQIMWKRELGSV--NDFI-------------VDGNRIYLVDQNDRVMALTIDGG-------------VTLWTQS 304 (376)
T ss_dssp EEETTTCCEEEEECCCCE--EEEE-------------EETTEEEEEETTCCEEEEETTTC-------------CEEEEEC
T ss_pred EEECCCCcEEeeccCCCC--CCce-------------EECCEEEEEcCCCeEEEEECCCC-------------cEEEeec
Confidence 999999999999875432 1121 22789999999999999999877 4445554
Q ss_pred -cCCcccccceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 792 -LQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 792 -~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
+.....++|++.++.||+++.+|.|+++|.++|++.+
T Consensus 305 ~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 305 DLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp TTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 5556778899999999999999999999999998753
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=259.48 Aligned_cols=321 Identities=19% Similarity=0.367 Sum_probs=243.5
Q ss_pred ccccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE
Q 003331 460 GFIQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK 539 (829)
Q Consensus 460 ~~~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~ 539 (829)
...+.+|+++++..+.++|++ |.++.||+++.++.|+++| .+|+++|.+..+.....++.+. .++.+|+++.+
T Consensus 7 ~~g~~~W~~~~~~~~~~~~~~---d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g~l~v~t~~-- 79 (330)
T 3hxj_A 7 NDCKIKWEFLIGNSIDSSPIL---AKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG-KDGTIYFGSDK-- 79 (330)
T ss_dssp -----CCTTTSCEEECCCCEE---CTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET-TTTEECCSSCE--
T ss_pred CCceEEEEEeCCCCcccCceE---ccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe-cCCcEEEecCc--
Confidence 456788999999999999988 4688999999988999999 8999999877766554455554 35689999866
Q ss_pred EEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe
Q 003331 540 IYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS 619 (829)
Q Consensus 540 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t 619 (829)
|+++|. +|+.+|.+.........+.+. ++.+|+++.++.|+++|.+ |+.+|..........+++.+. ++.+|+++
T Consensus 80 l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt 154 (330)
T 3hxj_A 80 VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGTIYVGS 154 (330)
T ss_dssp EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSCEEEEC
T ss_pred EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCEEEEEc
Confidence 999995 999999887666555556655 5899999999999999988 999999887776677777764 57799999
Q ss_pred cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCC
Q 003331 620 TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS 699 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~ 699 (829)
.++.|+++|.+ |+.+|.+........++.. ..++.+|+++ ++++++|.+|+.+|+..........+ ..+.++
T Consensus 155 ~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~-d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~--~~~~~g 226 (330)
T 3hxj_A 155 NDNYLYAINPD---GTEKWRFKTNDAITSAASI-GKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRP--AISEDG 226 (330)
T ss_dssp TTSEEEEECTT---SCEEEEEECSSCCCSCCEE-CTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCC--EECTTS
T ss_pred CCCEEEEECCC---CCEeEEEecCCCceeeeEE-cCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceece--EECCCC
Confidence 98999999976 7889988766554444433 3467899998 89999998899999987654433333 244567
Q ss_pred eEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003331 700 QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
.||+++.+++|+++| .+|+.+|.+.........+..+. ++.+|+++.+|.|+++|. ++
T Consensus 227 ~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~------------~g~l~v~t~~ggl~~~d~-~g-------- 284 (330)
T 3hxj_A 227 TIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGN------------TDTIYFGSYDGHLYAINP-DG-------- 284 (330)
T ss_dssp CEEEEETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECT------------TSCEEEECTTCEEEEECT-TS--------
T ss_pred eEEEEcCCCeEEEEC-CCCCEeEEeeCCCCccccceEcC------------CCeEEEecCCCCEEEECC-CC--------
Confidence 999999999999998 57889999887655544444432 789999999999999985 33
Q ss_pred ccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccc
Q 003331 780 KDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+..+.+.+++....+++. .++.||+++.+|.+++...+..+.+
T Consensus 285 -----~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~~~ 328 (330)
T 3hxj_A 285 -----TEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHHHH 328 (330)
T ss_dssp -----CEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC------
T ss_pred -----cEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccccccc
Confidence 445666677777778887 6889999999999998877655443
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-27 Score=269.72 Aligned_cols=324 Identities=16% Similarity=0.268 Sum_probs=240.1
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceEEee
Q 003331 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAAVLA 526 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~~~~ 526 (829)
....++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... .+..+..
T Consensus 44 n~~~l~~~W~~~~~~~~~~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (689)
T 1yiq_A 44 NVGQLGLAWSYKLDLDRGVEATPIV----VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV 119 (689)
T ss_dssp TGGGEEEEEEEECSSCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE
T ss_pred ccCCceEEEEEECCCCCCceecCEE----ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE
Confidence 3457889999999865 5789998 58999999999999999999999999987653211 0111223
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecC------CeeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEEE
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC------GEVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~------~~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~w 594 (829)
.++.||+++.|+.|++||++||+++|++... ..+.++|++.+ +.+|+++. ++.|++||.+||+++|
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 4579999999999999999999999999875 24455676654 78888763 5899999999999999
Q ss_pred eeccC-------------------------------CcccccceeecCCCEEEEEecCCe-------------------E
Q 003331 595 KLPCG-------------------------------GSIFGSPAIDEVHDVLYVASTSGR-------------------L 624 (829)
Q Consensus 595 ~~~~~-------------------------------~~~~~~~~~~~~~~~l~v~t~~g~-------------------l 624 (829)
++... +..+..+.++.+.+.||+++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 98631 112345677777899999998764 9
Q ss_pred EEEEccCCCceEEEeeccCCcc-----eeeeee----eecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----
Q 003331 625 TAISVKALPFHTLWLHELEVPA-----FASLCI----TSANR---HVICCLVDGHVVALD-SSGSIIWRCRTGGP----- 686 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~-----~~s~~~----~~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~----- 686 (829)
+++|+++ |+.+|+++..... .....+ ..++. .+++++.+|.++++| .+|+++|..+....
T Consensus 278 ~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 278 VAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 9999998 9999998753211 111111 11232 688888999999999 99999987653320
Q ss_pred --------e---------------eecCc---------cccc-CCCeEEEEee---------------------------
Q 003331 687 --------I---------------FAGPC---------TSFA-LPSQVLICSR--------------------------- 706 (829)
Q Consensus 687 --------~---------------~~~~~---------~~~~-~~~~i~~~t~--------------------------- 706 (829)
+ ...|. +..+ ..+.+|+.+.
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0 00010 1111 2456777632
Q ss_pred ------------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 707 ------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 707 ------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+|.|++||+.||+++|+++.+......++.. .++++++++.||.|++||.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t------------agglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST------------AGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEET
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE------------CCCEEEEECCCCcEEEEEC
Confidence 3779999999999999998776544333332 2889999999999999999
Q ss_pred ecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003331 769 NLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g 814 (829)
++| +.+|+++++..+...|+. .+|+.|++...|
T Consensus 504 ~tG-------------~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G 538 (689)
T 1yiq_A 504 DTG-------------EKLWEQPAASGVMAAPVTYSVDGEQYVTFMAG 538 (689)
T ss_dssp TTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCC-------------ccceeeeCCCCcccCceEEEECCEEEEEEEec
Confidence 987 788899999888888886 589999876544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=267.19 Aligned_cols=321 Identities=18% Similarity=0.271 Sum_probs=242.1
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee---------eceEEee
Q 003331 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE---------CSAAVLA 526 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~---------~~~~~~~ 526 (829)
....++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... ....+..
T Consensus 51 n~~~~~~~W~~~~~~~~g~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~ 126 (677)
T 1kb0_A 51 NVKDLGLAWSYNLESTRGVEATPVV----VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL 126 (677)
T ss_dssp TGGGEEEEEEEECCCCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE
T ss_pred cccCccEEEEEECCCCCCceeCCEE----ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE
Confidence 3456889999999854 7789998 58899999999999999999999999998764210 0112223
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecC------CeeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEEE
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC------GEVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~------~~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~w 594 (829)
+++.||+++.|+.|+++|++||+++|++... ..+...|++.+ +.||+++. ++.|++||.+||+.+|
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4579999999999999999999999999876 34556677664 78999875 6899999999999999
Q ss_pred eeccCCc--------------------------------ccccceeecCCCEEEEEecCC-------------------e
Q 003331 595 KLPCGGS--------------------------------IFGSPAIDEVHDVLYVASTSG-------------------R 623 (829)
Q Consensus 595 ~~~~~~~--------------------------------~~~~~~~~~~~~~l~v~t~~g-------------------~ 623 (829)
++..... .+..+.++.+.+.||+++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 9876322 123456777789999998764 4
Q ss_pred EEEEEccCCCceEEEeeccCCcc------eeeeeeee---cC---CEEEEEeeCCeEEEEc-CCCCEEEEeecCC-----
Q 003331 624 LTAISVKALPFHTLWLHELEVPA------FASLCITS---AN---RHVICCLVDGHVVALD-SSGSIIWRCRTGG----- 685 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~---~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~----- 685 (829)
|+++|+++ |+.+|+++..... ...+.+.. ++ +.+++++.+|.++++| .+|+++|......
T Consensus 285 v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 285 IVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 99999998 9999998764321 12233222 33 5688889999999999 9999999886431
Q ss_pred -------ce------------eecC---------ccccc-CCCeEEEEeeC-----------------------------
Q 003331 686 -------PI------------FAGP---------CTSFA-LPSQVLICSRN----------------------------- 707 (829)
Q Consensus 686 -------~~------------~~~~---------~~~~~-~~~~i~~~t~~----------------------------- 707 (829)
++ ...| .+..+ ..+.+|+.+.+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 11 1111 01112 34678886542
Q ss_pred --------------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcc
Q 003331 708 --------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVT 773 (829)
Q Consensus 708 --------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~ 773 (829)
|.|++||..||+++|++..+......+... .++.+|+++.+|.|++||..++
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~------------~g~~v~~g~~dg~l~a~D~~tG-- 508 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT------------AGNVVFQGTADGRLVAYHAATG-- 508 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTTC--
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe------------CCCEEEEECCCCcEEEEECCCC--
Confidence 789999999999999998766544433332 2789999999999999999987
Q ss_pred ccccccccccceeeeeeccCCcccccceE--ECCEEEEee
Q 003331 774 GKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC 811 (829)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~ 811 (829)
+.+|++.++..+...|+. .+++.|++.
T Consensus 509 -----------~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 509 -----------EKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp -----------CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred -----------ceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 778888888888888888 588888764
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-29 Score=273.04 Aligned_cols=213 Identities=15% Similarity=0.194 Sum_probs=169.4
Q ss_pred CCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEEecC
Q 003331 17 PSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVES 96 (829)
Q Consensus 17 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~ 96 (829)
+++||.+++|||++++++.+.+.+.+ +++++|.||+||+++.+....+.. ....++.|.+++.++|+|+
T Consensus 209 ~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~TE~~g~~~~~~~~~----------~~~g~~~~~~~~~~~i~d~ 277 (437)
T 2y27_A 209 QSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVASECVE----------TKDGPTIWEDHFYPEIIDP 277 (437)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEETTTTEEEEEECCTT----------TCSSCEECTTTEEEEEECT
T ss_pred cCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCchhhcCCeeEEecCC----------CCCceeEccCceEEEEEcC
Confidence 57999999999999999999999888 799999999999854322222221 1112556778999999985
Q ss_pred C-C---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEcc-CCcE-----EEE
Q 003331 97 D-T---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQ-SGDL-----VFL 166 (829)
Q Consensus 97 ~-~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~-~G~l-----~~~ 166 (829)
+ + +.++.|||+|+|. +.+.| ..+||+|||+|++++ +|.+ +|+
T Consensus 278 ~~g~~~~~g~~Gel~v~~~------------t~~~~----------------~~~~y~TGDl~~~~~~~G~~~~~i~~i~ 329 (437)
T 2y27_A 278 ETGEVLPDGELGELVFTSL------------TKEAL----------------PIIRYRTRDLTRLLPGTARTMRRMEKIT 329 (437)
T ss_dssp TTCCBCCTTCCEEEEEEES------------SCSSS----------------CCCSEEEEEEECEECCSSSSSCEECCCC
T ss_pred CCCCCCCCCCccEEEEecC------------CcCCc----------------hhheeecCCEEEEeCCCCCCccccCccc
Confidence 4 3 3567799999872 22223 247899999999999 6985 899
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCC-Cc
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MI 245 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~ 245 (829)
||.||+||++|++|+|.+||++|.+||.|.+++++..+++..+..++++|++.++........+++++++++.|+.+ .+
T Consensus 330 GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 409 (437)
T 2y27_A 330 GRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGV 409 (437)
T ss_dssp EEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998888877766677899999887654322234567888888888888 48
Q ss_pred CCeEEEe--CcccCCCCCCcchhhhc
Q 003331 246 PNRFVFM--DSLPMTSSGKVDYASLS 269 (829)
Q Consensus 246 p~~~~~~--~~lP~t~~GKi~r~~l~ 269 (829)
|..+.++ ++||+|+ ||++|...+
T Consensus 410 p~~v~~v~~~~lP~t~-GKi~r~~~~ 434 (437)
T 2y27_A 410 TAVINVLPVNGIERSV-GKARRVVDK 434 (437)
T ss_dssp CEEEEECCTTCSCCCS-SSCCCEEEC
T ss_pred ceEEEEeCCCCccCCC-CcceEEEec
Confidence 8888888 5899999 999998654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-25 Score=255.24 Aligned_cols=322 Identities=21% Similarity=0.316 Sum_probs=236.3
Q ss_pred cccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCcee-----------eceEE
Q 003331 458 KRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIE-----------CSAAV 524 (829)
Q Consensus 458 ~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~-----------~~~~~ 524 (829)
....++++|+++++.. +.++|++ .++.||+++.++.|+++|+.||+++|+++...... ..+.+
T Consensus 40 n~~~l~~~W~~~~~~~~~~~~~P~v----~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (668)
T 1kv9_A 40 NVRSLGLAWYMDLDNTRGLEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL 115 (668)
T ss_dssp TGGGEEEEEEEECSCCSCCCCCCEE----ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE
T ss_pred ccCCcceEEEEECCCCCCcccCCEE----ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE
Confidence 4457889999999764 5789998 58999999999999999999999999987654211 12233
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEE
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCV 593 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~ 593 (829)
.++.||+++.++.|+++|++||+++|++.... .+...|++.+ +.||+++. +|.|+++|++||+++
T Consensus 116 --~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--~~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 116 --WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp --EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred --ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC--CEEEEeCCCCCcCCCCEEEEEECCCCcEE
Confidence 45689999999999999999999999998742 3455666654 78888864 488999999999999
Q ss_pred EeeccC-------------------------------CcccccceeecCCCEEEEEecCCe-------------------
Q 003331 594 YKLPCG-------------------------------GSIFGSPAIDEVHDVLYVASTSGR------------------- 623 (829)
Q Consensus 594 w~~~~~-------------------------------~~~~~~~~~~~~~~~l~v~t~~g~------------------- 623 (829)
|++... +..+..+.++.+.+.+|+++.++.
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 998642 112345677777799999987763
Q ss_pred EEEEEccCCCceEEEeeccCCcc-----eeeee----eeecCC---EEEEEeeCCeEEEEc-CCCCEEEEeecCC-----
Q 003331 624 LTAISVKALPFHTLWLHELEVPA-----FASLC----ITSANR---HVICCLVDGHVVALD-SSGSIIWRCRTGG----- 685 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~-----~~s~~----~~~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~~~----- 685 (829)
|+++|+++ |+.+|+++..... ..++. +..++. .+++++.+|.++++| .+|+++|..+...
T Consensus 272 v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 272 ILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp EEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred EEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 99999998 9999999764211 01111 112332 588889999999999 9999996654321
Q ss_pred --------ceee------------cCc---------cccc-CCCeEEEEe------------------------------
Q 003331 686 --------PIFA------------GPC---------TSFA-LPSQVLICS------------------------------ 705 (829)
Q Consensus 686 --------~~~~------------~~~---------~~~~-~~~~i~~~t------------------------------ 705 (829)
++.. .|. +..+ ..+.+|+.+
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 1110 000 0111 235566532
Q ss_pred ------eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003331 706 ------RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 706 ------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
.+|.|++||+.||+.+|+.+........+... .++++++++.+|.|++||.++|
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t------------~gg~vf~g~~dg~l~a~d~~tG-------- 489 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST------------AGNLVFQGTAAGQMHAYSADKG-------- 489 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTTC--------
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEe------------CCCEEEEECCcccchhhhhhcC--------
Confidence 23789999999999999998766544333222 2889999999999999999877
Q ss_pred ccccceeeeeeccCCcccccceE--ECCEEEEeeeCC
Q 003331 780 KDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDD 814 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g 814 (829)
+.++.++++..+...|+. .++++|++...|
T Consensus 490 -----~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 490 -----EALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp -----CEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred -----hhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 778888888888888886 588888865443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-23 Score=234.39 Aligned_cols=307 Identities=18% Similarity=0.215 Sum_probs=213.4
Q ss_pred EECCCCcEEEEEEcCCc----eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee---------eeeeeee
Q 003331 501 ADAKRSSVLWEIKLEGR----IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---------KCQPVVD 567 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~~----~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---------~~~~~~~ 567 (829)
.|..++++.|++..++. ...++++. ++.||+++.++.|+++|++||+++|++...... ...+.+.
T Consensus 39 ~n~~~~~~~W~~~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~ 116 (582)
T 1flg_A 39 DNVFKLTPAWSYSFGDEKQRGQESQAIVS--DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY 116 (582)
T ss_dssp TTGGGCEEEEEEECCTTCCSCCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE
T ss_pred cccCCCcEEEEEECCCccCCcceeccEEE--CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE
Confidence 45678999999988743 23456553 468999988667999999999999999875432 1223443
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCC------EEEEEec------CCeEEEEEcc
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHD------VLYVAST------SGRLTAISVK 630 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~------~l~v~t~------~g~l~~~~~~ 630 (829)
++.||+++.++.|+++|++||+++|++.... ...++|++.+ + .||+++. +|.|+++|++
T Consensus 117 --~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~--~~~~G~~~v~vg~~~~e~~~~g~v~alD~~ 192 (582)
T 1flg_A 117 --GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVK--DGKTGKVLLIHGSSGDEFGVVGRLFARDPD 192 (582)
T ss_dssp --TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEE--CTTTCCEEEEECCBCGGGCCBCEEEEECTT
T ss_pred --CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeC--CCcCCcEEEEEeccccccCCCCEEEEEECC
Confidence 4889999999999999999999999987754 3556787766 4 8888764 7899999999
Q ss_pred CCCceEEEeeccCCc-----------------------------------------ceeeeeeeecCCEEEEEeeC----
Q 003331 631 ALPFHTLWLHELEVP-----------------------------------------AFASLCITSANRHVICCLVD---- 665 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~-----------------------------------------~~~s~~~~~~~~~l~~~~~~---- 665 (829)
+ |+.+|....... ...++.+.+..+.+|+++.+
T Consensus 193 t--G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~ 270 (582)
T 1flg_A 193 T--GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPW 270 (582)
T ss_dssp T--CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSS
T ss_pred C--CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcc
Confidence 8 999998754210 01123444567899998841
Q ss_pred --------------------CeEEEEc-CCCCEEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEE
Q 003331 666 --------------------GHVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYS 712 (829)
Q Consensus 666 --------------------g~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~ 712 (829)
+.|+++| .+|+++|+++.... ..+.|.+... .++ .+++++.+|.+++
T Consensus 271 ~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~ 350 (582)
T 1flg_A 271 NTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYV 350 (582)
T ss_dssp CGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEE
T ss_pred cCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEE
Confidence 5899999 99999999976422 1233433321 233 5778899999999
Q ss_pred EeCCCCcEEEEEecCCccc---------cccc-------------------------cccccccccccccCCCcEEEEEc
Q 003331 713 FEQESGNLLWEYSVGDPIT---------ASAY-------------------------IDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~---------~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
+|.+||+++|.+.....+. ..+. ..........+..+..+.+|+..
T Consensus 351 lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 430 (582)
T 1flg_A 351 VDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPA 430 (582)
T ss_dssp EETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEE
T ss_pred EECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEec
Confidence 9999999999988754211 0000 00000000001112234566543
Q ss_pred ---------------------------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccc-eEEC
Q 003331 759 ---------------------------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP-VMIG 804 (829)
Q Consensus 759 ---------------------------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~ 804 (829)
..|.|++||+.++ +..|+..........+ +..+
T Consensus 431 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tag 497 (582)
T 1flg_A 431 NHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-------------KVVWEHKEHLPLWAGVLATAG 497 (582)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-------------CEEEEEEESSCCCSCCEEETT
T ss_pred hhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC-------------CEEEEecCCCCCcccceEeCC
Confidence 2577888888876 5566666555555544 4468
Q ss_pred CEEEEeeeCCeEEEEecccccccc
Q 003331 805 GRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 805 ~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
+.+|+|+.||.|++||.+||++.+
T Consensus 498 glvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 498 NLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEE
T ss_pred CEEEEECCCCcEEEEECCCCCEEE
Confidence 999999999999999999999765
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-23 Score=231.93 Aligned_cols=305 Identities=14% Similarity=0.142 Sum_probs=215.4
Q ss_pred CCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEc-CCCcEEEEEecCCe-----------eeeeeeee
Q 003331 503 AKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDY-LTGDIYWTFQTCGE-----------VKCQPVVD 567 (829)
Q Consensus 503 ~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~-~tG~~~w~~~~~~~-----------~~~~~~~~ 567 (829)
..+.++.|+++++. .+..++++. ++.||+++. ++.|+++|+ +||+++|++..... +...+.+.
T Consensus 37 ~~~l~~~W~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (571)
T 2ad6_A 37 VKNVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG 114 (571)
T ss_dssp GGGCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE
T ss_pred ccCccEEEEEECCCCCCcccccEEE--CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE
Confidence 34578889988763 244566664 468999998 899999999 99999999876542 11234444
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCCCceE
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHT 636 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~ 636 (829)
++.||+++.++.|+++|.+||+.+|++.... .+.++|++.+ +.||+++. +|.|+++|.++ |+.
T Consensus 115 --~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--g~v~vg~~~~~~~~~g~v~a~D~~t--G~~ 188 (571)
T 2ad6_A 115 --AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKT--GEL 188 (571)
T ss_dssp --TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTT--CCE
T ss_pred --CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEEC--CEEEEEecCCccCCCCEEEEEECCC--CcE
Confidence 4889999999999999999999999988765 4567787765 89999986 68999999998 999
Q ss_pred EEeeccCCcce--------------------------------------eeeeeeecCCEEEEEeeC-------------
Q 003331 637 LWLHELEVPAF--------------------------------------ASLCITSANRHVICCLVD------------- 665 (829)
Q Consensus 637 ~w~~~~~~~~~--------------------------------------~s~~~~~~~~~l~~~~~~------------- 665 (829)
+|++....+.. ..+.+....+.+|+++.+
T Consensus 189 ~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 189 KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCc
Confidence 99987643220 112344456899998743
Q ss_pred ---CeEEEEc-CCCCEEEEeecCCc------eeecCccccc-CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003331 666 ---GHVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 666 ---g~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
+.|+++| .+|+.+|+++.... ..+.|.+... .++ .+++++.+|.++++|.+||+++|..+....+
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 3599999 99999999986431 2234443221 134 3677888999999999999999998765421
Q ss_pred c---------ccccc-------------------ccccccccccccCCCcEEEEEc------------------------
Q 003331 731 T---------ASAYI-------------------DEHLQLKLESCLSIDRLVCICT------------------------ 758 (829)
Q Consensus 731 ~---------~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~------------------------ 758 (829)
. ..|.. .........+..+..+++|+.+
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 0 00100 0000000011122356666654
Q ss_pred -------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccc
Q 003331 759 -------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 759 -------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+|.|+++|..++ +..|++.......++++. .++.+|+++.+|.|++||.++|
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG-------------~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTG-------------KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ceeccCccccCCCCCCeEEEEECCCC-------------CEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCC
Confidence 2477888888766 566776666555566554 5899999999999999999999
Q ss_pred cccc
Q 003331 825 HLEE 828 (829)
Q Consensus 825 ~~~~ 828 (829)
+..+
T Consensus 496 ~~lw 499 (571)
T 2ad6_A 496 KELW 499 (571)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=231.40 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=212.5
Q ss_pred CCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEc-CCCcEEEEEecCCee-----------eeeeeee
Q 003331 503 AKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDY-LTGDIYWTFQTCGEV-----------KCQPVVD 567 (829)
Q Consensus 503 ~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~-~tG~~~w~~~~~~~~-----------~~~~~~~ 567 (829)
..++++.|++.++. ....++++. ++.||+++. ++.|+++|+ +||+++|+++..... ...+.+.
T Consensus 37 v~~l~~~W~~~~g~~~g~~~tP~v~--~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~ 114 (599)
T 1w6s_A 37 VKQLRPAWTFSTGLLNGHEGAPLVV--DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW 114 (599)
T ss_dssp GGGEEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEE
T ss_pred cCCCcEEEEEECCCCCCceeccEEE--CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEE
Confidence 34678889988763 234566664 468999998 899999999 999999999875431 1224442
Q ss_pred cCCCE----EEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCC
Q 003331 568 APRQL----IWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKAL 632 (829)
Q Consensus 568 ~~~~~----i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~ 632 (829)
+.++. ||+++.++.|+++|.+||+++|+..... .+.++|++.+ +.||+++. +|.|+++|.++
T Consensus 115 p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~--g~V~vg~~g~e~g~~g~v~A~D~~T- 191 (599)
T 1w6s_A 115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKT- 191 (599)
T ss_dssp CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTT-
T ss_pred ecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEEC--CEEEEEecccccCCCCeEEEEECCC-
Confidence 12355 9999999999999999999999987765 5667888875 89999874 78999999998
Q ss_pred CceEEEeeccCCcce--------------------------------------eeeeeeecCCEEEEEeeCC--------
Q 003331 633 PFHTLWLHELEVPAF--------------------------------------ASLCITSANRHVICCLVDG-------- 666 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~--------------------------------------~s~~~~~~~~~l~~~~~~g-------- 666 (829)
|+.+|++....+.. ..+.+....+.+|+++.++
T Consensus 192 -G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 192 -GEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp -CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred -CcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 99999987654321 1234455788999998653
Q ss_pred --------eEEEEc-CCCCEEEEeecCCc------eeecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 667 --------HVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 667 --------~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
.|+++| .+|+++|+++.... ..+.|.+... .++ .++.++.+|.+|++|.+||+++|...
T Consensus 271 ~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp CSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 899999 99999999986532 1233333221 234 46668899999999999999999987
Q ss_pred cCCccc---------ccccccc-------------------ccccccccccCCCcEEEEEc-------------------
Q 003331 726 VGDPIT---------ASAYIDE-------------------HLQLKLESCLSIDRLVCICT------------------- 758 (829)
Q Consensus 726 ~~~~~~---------~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~------------------- 758 (829)
....+. ..+.... .......+..+..+++|+..
T Consensus 351 ~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 351 LDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp SSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 542110 0000000 00000000011122333221
Q ss_pred --------------------cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEE
Q 003331 759 --------------------SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIY 817 (829)
Q Consensus 759 --------------------~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~ 817 (829)
..|.|++||..++ +..|+........+.++. .++.+|+++.+|.|+
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~ 497 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITG-------------DYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLK 497 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCC-------------CEEeEecCCCCccCcceEecCCEEEEECCCCeEE
Confidence 3477888888776 566666655555555554 689999999999999
Q ss_pred EEecccccccc
Q 003331 818 CIALETQHLEE 828 (829)
Q Consensus 818 ~~d~~tg~~~~ 828 (829)
+||.+||+..+
T Consensus 498 A~D~~tG~~lW 508 (599)
T 1w6s_A 498 ARDSDTGDLLW 508 (599)
T ss_dssp EEETTTCCEEE
T ss_pred EEECCCCCEEE
Confidence 99999999765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=239.12 Aligned_cols=308 Identities=17% Similarity=0.170 Sum_probs=220.2
Q ss_pred EEECCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeee
Q 003331 500 CADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVV 566 (829)
Q Consensus 500 ~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~ 566 (829)
..|..++++.|++.++.. +..++++. ++.||+++.++.|+++|++||+++|+++.... ....+.+
T Consensus 49 ~~n~~~~~~~W~~~~~~~~g~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~ 126 (677)
T 1kb0_A 49 AANVKDLGLAWSYNLESTRGVEATPVVV--DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL 126 (677)
T ss_dssp TTTGGGEEEEEEEECCCCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE
T ss_pred cccccCccEEEEEECCCCCCceeCCEEE--CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE
Confidence 345667899999987643 45566664 46899999999999999999999999987542 1223444
Q ss_pred ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEec------CCeEEEEEccCCCc
Q 003331 567 DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPF 634 (829)
Q Consensus 567 ~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g 634 (829)
. ++.||+++.++.|+++|.+||+++|++... ....++|++.+ +.||+++. +|.|+++|.++ |
T Consensus 127 ~--~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~v~v~~~~~~~~~~g~v~a~D~~t--G 200 (677)
T 1kb0_A 127 W--KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAET--G 200 (677)
T ss_dssp E--TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--C
T ss_pred E--CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEEC--CEEEEEecccccCCCCEEEEEECCC--C
Confidence 3 589999999999999999999999999876 34667788775 89999875 58899999998 9
Q ss_pred eEEEeeccCCcce--------------------------------eeeeeeecCCEEEEEeeCC----------------
Q 003331 635 HTLWLHELEVPAF--------------------------------ASLCITSANRHVICCLVDG---------------- 666 (829)
Q Consensus 635 ~~~w~~~~~~~~~--------------------------------~s~~~~~~~~~l~~~~~~g---------------- 666 (829)
+.+|++....+.. ..+.+.++++.+|+++.++
T Consensus 201 ~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 201 ERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred cEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe
Confidence 9999987643220 1234555788999998664
Q ss_pred ---eEEEEc-CCCCEEEEeecCCc------eeecCccccc-CC----CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccc
Q 003331 667 ---HVVALD-SSGSIIWRCRTGGP------IFAGPCTSFA-LP----SQVLICSRNGSIYSFEQESGNLLWEYSVGDPIT 731 (829)
Q Consensus 667 ---~i~~~d-~~g~~~w~~~~~~~------~~~~~~~~~~-~~----~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~ 731 (829)
.|+++| .+|+++|+++.... ..+.|.+... .+ +.+++++.+|.|+++|.+||+++|..+......
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCc
Confidence 499999 99999999886432 1233332211 12 468888999999999999999999987543110
Q ss_pred ------------------------cccccccccccccccccCCCcEEEEEccC---------------------------
Q 003331 732 ------------------------ASAYIDEHLQLKLESCLSIDRLVCICTSS--------------------------- 760 (829)
Q Consensus 732 ------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------- 760 (829)
..|...........+.....+++|+.+.+
T Consensus 361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 440 (677)
T 1kb0_A 361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW 440 (677)
T ss_dssp EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence 00000000000011112346788876532
Q ss_pred ----------------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccc
Q 003331 761 ----------------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 761 ----------------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~t 823 (829)
|.|.+||..++ +..|++.........++. .++.+|+++.+|.|++||.+|
T Consensus 441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t 507 (677)
T 1kb0_A 441 NTAKFFNAEPPKSKPFGRLLAWDPVAQ-------------KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT 507 (677)
T ss_dssp CCCEEECSSCCCSCCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred ccccccccccCCCCCccEEEEEeCCCC-------------cEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence 67899998876 667777666555555444 578999999999999999999
Q ss_pred ccccc
Q 003331 824 QHLEE 828 (829)
Q Consensus 824 g~~~~ 828 (829)
|++.+
T Consensus 508 G~~lw 512 (677)
T 1kb0_A 508 GEKLW 512 (677)
T ss_dssp CCEEE
T ss_pred Cceee
Confidence 99754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=219.29 Aligned_cols=275 Identities=21% Similarity=0.377 Sum_probs=211.9
Q ss_pred ccccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEE
Q 003331 462 IQELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIY 541 (829)
Q Consensus 462 ~~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~ 541 (829)
.+..|+++++..+..++++ +.++.||+++.+ |+++|. +|+.+|.+..+.....++.+. ++.+|+++.++.|+
T Consensus 49 g~~~~~~~~~~~~~~~~~~---~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~ 120 (330)
T 3hxj_A 49 GSVKWFFKSGEIIECRPSI---GKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLY 120 (330)
T ss_dssp SCEEESSCGGGEEEECCEE---TTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEE
T ss_pred CcEEEEEecCCCcccceEE---ecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEE
Confidence 3457888877666667766 468899999977 999997 899999876655544445554 57899999999999
Q ss_pred EEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC
Q 003331 542 FLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 542 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
++|.. |+.+|.+.........++.. .++.+|+++.++.|+++|.+ |+.+|.+........+++.+. ++.+|+++
T Consensus 121 ~~d~~-g~~~~~~~~~~~~~~~~~~~-~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v~t-- 194 (330)
T 3hxj_A 121 AINTD-GTEKWRFKTKKAIYATPIVS-EDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYFGS-- 194 (330)
T ss_dssp EECTT-SCEEEEEECSSCCCSCCEEC-TTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEEES--
T ss_pred EEcCC-CCEEEEEcCCCceeeeeEEc-CCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEEEe--
Confidence 99988 99999988766655555554 46779999998999999998 999999987776667777654 57899999
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
+.|+++| .+ |+.+|..........++.. ..++.+|+++.+++++++|.+|+.+|++.......+.+. .+.++.|
T Consensus 195 ~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~-~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~--~~~~g~l 268 (330)
T 3hxj_A 195 DKVYAIN-PD--GTEKWNFYAGYWTVTRPAI-SEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPV--IGNTDTI 268 (330)
T ss_dssp SSEEEEC-TT--SCEEEEECCSSCCCSCCEE-CTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCE--ECTTSCE
T ss_pred CEEEEEC-CC--CcEEEEEccCCcceeceEE-CCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccce--EcCCCeE
Confidence 6799999 55 8999998765544344443 345699999999999999988999999887655444432 3457899
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 702 LICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
|+++.+|+|+++|+ +|+.+|.+..+.....+++.+. ++.+|+++.+|.+++...+
T Consensus 269 ~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~------------~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 269 YFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE------------NGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT------------TCCEEEECTTSCEEEEEC-
T ss_pred EEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC------------CCEEEEEcCCCeEEEEecc
Confidence 99999999999996 8999999887666555554443 7889999999988877654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=232.12 Aligned_cols=304 Identities=18% Similarity=0.236 Sum_probs=210.9
Q ss_pred CCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeeecCC
Q 003331 504 KRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVDAPR 570 (829)
Q Consensus 504 ~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~~~ 570 (829)
.+.++.|++.++.. +..++++. ++.||+++.++.|+++|++||+++|+++.... +...+.+. +
T Consensus 46 ~~l~~~W~~~~~~~~~~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 121 (689)
T 1yiq_A 46 GQLGLAWSYKLDLDRGVEATPIVV--DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW--K 121 (689)
T ss_dssp GGEEEEEEEECSSCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--T
T ss_pred CCceEEEEEECCCCCCceecCEEE--CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE--C
Confidence 35678888877643 34456553 46899999999999999999999999876432 11234444 4
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEE
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w 638 (829)
+.||+++.++.|+++|.+||+++|++... ..+.++|++.+ +.||+++. +|.|+++|.++ |+.+|
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~--g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 197 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVN--GKVVIGNGGAEFGVRGYVTAYDAET--GKEAW 197 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEEC--CEEEEEeCCCccCCCCEEEEEECCC--CcEEE
Confidence 88999999999999999999999998775 24556777765 88999864 58899999998 99999
Q ss_pred eeccCC--c-----------------------------ceeeeeeeecCCEEEEEeeCCe-------------------E
Q 003331 639 LHELEV--P-----------------------------AFASLCITSANRHVICCLVDGH-------------------V 668 (829)
Q Consensus 639 ~~~~~~--~-----------------------------~~~s~~~~~~~~~l~~~~~~g~-------------------i 668 (829)
++.... + ...++.+.++.+.+|+++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 986321 1 0113445556889999987753 9
Q ss_pred EEEc-CCCCEEEEeecCCc-e----eecCccccc--CCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc----
Q 003331 669 VALD-SSGSIIWRCRTGGP-I----FAGPCTSFA--LPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPITA---- 732 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~-~----~~~~~~~~~--~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~---- 732 (829)
+++| .+|+++|+++.... . ...+.+..+ .++ .+++++.+|.++++|.+||+++|..+.......
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999 99999999875321 1 111111111 123 588889999999999999999987765431100
Q ss_pred ----cccccccc--------------------ccccccccCCCcEEEEEcc-----------------------------
Q 003331 733 ----SAYIDEHL--------------------QLKLESCLSIDRLVCICTS----------------------------- 759 (829)
Q Consensus 733 ----~~~~~~~~--------------------~~~~~~~~~~~~~l~~~~~----------------------------- 759 (829)
.+...... .....+.....+++|+.+.
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 00000000 0000111234567776632
Q ss_pred ----------------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeCCeEEEEecc
Q 003331 760 ----------------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 760 ----------------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+|.|++||+.++ +..|+..........++ ..++.+|+|+.||.|++||.+
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQ-------------QAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCC-------------CeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 367888888876 66677766655544433 468899999999999999999
Q ss_pred cccccc
Q 003331 823 TQHLEE 828 (829)
Q Consensus 823 tg~~~~ 828 (829)
||++.+
T Consensus 505 tG~~lw 510 (689)
T 1yiq_A 505 TGEKLW 510 (689)
T ss_dssp TCCEEE
T ss_pred CCccce
Confidence 999764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-21 Score=222.74 Aligned_cols=305 Identities=15% Similarity=0.196 Sum_probs=209.4
Q ss_pred CCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-----------eeeeeeecC
Q 003331 503 AKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV-----------KCQPVVDAP 569 (829)
Q Consensus 503 ~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~-----------~~~~~~~~~ 569 (829)
..++++.|+++++.. +..++++. ++.||+++.++.|+++|++||+++|+++..... ...+.+.
T Consensus 41 ~~~l~~~W~~~~~~~~~~~~~P~v~--~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-- 116 (668)
T 1kv9_A 41 VRSLGLAWYMDLDNTRGLEATPLFH--DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-- 116 (668)
T ss_dssp GGGEEEEEEEECSCCSCCCCCCEEE--TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--
T ss_pred cCCcceEEEEECCCCCCcccCCEEE--CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE--
Confidence 346778898887643 34566654 468999999999999999999999999764321 1234444
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEE
Q 003331 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w 638 (829)
++.||+++.++.|+++|.+||+++|++... ....++|++.+ +.||+++. +|.|+++|.++ |+.+|
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~--~~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADT--GKLAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEEC--CEEEEeCCCCCcCCCCEEEEEECCC--CcEEE
Confidence 488999999999999999999999999774 23456777765 89999875 48899999998 99999
Q ss_pred eeccCC--cc-----------------------------eeeeeeeecCCEEEEEeeCC-------------------eE
Q 003331 639 LHELEV--PA-----------------------------FASLCITSANRHVICCLVDG-------------------HV 668 (829)
Q Consensus 639 ~~~~~~--~~-----------------------------~~s~~~~~~~~~l~~~~~~g-------------------~i 668 (829)
++.... +. ..++.+....+.+|+++.++ .|
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 986421 10 01234555678999998765 39
Q ss_pred EEEc-CCCCEEEEeecCCce-----eecCcccc--cCCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcc------
Q 003331 669 VALD-SSGSIIWRCRTGGPI-----FAGPCTSF--ALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPI------ 730 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~-----~~~~~~~~--~~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~------ 730 (829)
+++| .+|+++|+++..... ...+.+.. ..++ .+++++.+|.++++|..||+++|..+.....
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccc
Confidence 9999 999999999864211 11111111 1134 4888999999999999999999766543210
Q ss_pred --cccccccccccc-----------------ccccccCCCcEEEEEc---------------------------------
Q 003331 731 --TASAYIDEHLQL-----------------KLESCLSIDRLVCICT--------------------------------- 758 (829)
Q Consensus 731 --~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~--------------------------------- 758 (829)
...+.......+ ...+.....+.+|+.+
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 000100000000 0001112245555432
Q ss_pred ---cCCcEEEEEeecCccccccccccccceeeeeeccCCcccc-cceEECCEEEEeeeCCeEEEEecccccccc
Q 003331 759 ---SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS-SPVMIGGRVFVGCRDDYIYCIALETQHLEE 828 (829)
Q Consensus 759 ---~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~l~vg~~~g~l~~~d~~tg~~~~ 828 (829)
.+|.|++||..++ +..|+......... .++..++.+|+++.+|.|++||.++|++.+
T Consensus 433 ~~~~~g~l~A~D~~tG-------------~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQ-------------KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp GGGCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCccceEEEEeCCCC-------------cEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 2377899998876 66666666555443 455578999999999999999999998753
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=231.87 Aligned_cols=264 Identities=15% Similarity=0.199 Sum_probs=169.4
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFG 604 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~ 604 (829)
+++.||+++.|+.|++||++||+++|++.. +.+.+.|++.+ +..+++++.++.|++||.++|+.+|+..... ...+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567999999999999999999999999987 66666666653 3455556889999999999999999876532 2345
Q ss_pred cceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003331 605 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
+|++.. ++.||+++.++.+++||+++ |+.+|++....... ..+.++.+++++.++.|+++| .+|+++|++..
T Consensus 86 sp~~~~-~~~v~~g~~dg~v~a~D~~t--G~~~w~~~~~~~~~----~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRSS-DGILYMGKKQDIWYVIDLLT--GEKQQTLSSAFADS----LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEec-CCEEEEEeCCCEEEEEECCC--CcEEEEecCCCccc----ccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 666522 47899999999999999998 99999987654322 223678999999999999999 89999999874
Q ss_pred CCceeecCcccc--cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc---
Q 003331 684 GGPIFAGPCTSF--ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT--- 758 (829)
Q Consensus 684 ~~~~~~~~~~~~--~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 758 (829)
.. ...+.+.. ..++.+|+++.+|.|+++|.++|+.+|+++...++...+.... ++.+++..
T Consensus 159 ~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~------------dg~~~v~~~~~ 224 (369)
T 2hz6_A 159 FD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR------------EGLRKVMHINV 224 (369)
T ss_dssp EE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT------------SSCEEECCEEE
T ss_pred cc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC------------CceEeccceee
Confidence 32 23333221 1237899999999999999999999999987665543222221 34433211
Q ss_pred cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccc
Q 003331 759 SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 759 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~t 823 (829)
.++.++++|..+|... ....|++.+.+.+. +|++.++.||+++.+|.||+++..+
T Consensus 225 ~~~~l~~ld~~tG~~~---------~~~~W~~~~~~~~~-sp~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 225 AVETLRYLTFMSGEVG---------RITKWKYPFPKETE-AKSKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp EHHHHHHHHHHHHHHH---------HHHTSCCCCCCHHH-HHHHSEEEECBEECSSCEECCEEEE
T ss_pred cccceeeeehhcCCcc---------cceeeeeccCcccc-ccccccceEEEecccCCEEecCccc
Confidence 1345677776654100 00456666666655 8888899999999999999999873
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.5e-25 Score=233.10 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=171.2
Q ss_pred ccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003331 476 ASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 476 ~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
++|++ .++.||+++.++.|++||+.||+++|++.. +.+..++.+ .++..+++++.|+.|++||++||+.+|+..
T Consensus 3 ssP~v----~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 3 STVTL----PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp ---------CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECS
T ss_pred CCCee----eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 57887 789999999999999999999999999987 544444444 343455556789999999999999999865
Q ss_pred cCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 556 TCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 556 ~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
... .+.++|++. .++.||+++.++.+++||+++|+.+|++..+.....+| +++.+|+++.++.|++||.++
T Consensus 77 ~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p----~~~~v~~~~~dg~v~a~d~~t-- 149 (369)
T 2hz6_A 77 FTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP----STSLLYLGRTEYTITMYDTKT-- 149 (369)
T ss_dssp CCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS--
T ss_pred ccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc----cCCEEEEEecCCEEEEEECCC--
Confidence 432 223445542 24789999999999999999999999987765433333 468999999999999999988
Q ss_pred ceEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe---e
Q 003331 634 FHTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS---R 706 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t---~ 706 (829)
|+.+|++.... ..++.+..+ ++.+++++.+|.++++| .+|+++|++....++....+ ...++.+|+.. .
T Consensus 150 G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~--~~~dg~~~v~~~~~~ 225 (369)
T 2hz6_A 150 RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYV--WQREGLRKVMHINVA 225 (369)
T ss_dssp SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEE--CTTSSCEEECCEEEE
T ss_pred CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEE--ecCCceEeccceeec
Confidence 99999976432 123333221 27899999999999999 89999999987777655332 22355554321 2
Q ss_pred CCeEEEEeCCCCc----EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 707 NGSIYSFEQESGN----LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 707 ~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
++.++++|..+|+ .+|++.....+. ++.. .++.+|+++.+|.|++++...
T Consensus 226 ~~~l~~ld~~tG~~~~~~~W~~~~~~~~~-sp~~-------------~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 226 VETLRYLTFMSGEVGRITKWKYPFPKETE-AKSK-------------LTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCHHH-HHHH-------------SEEEECBEECSSCEECCEEEE
T ss_pred ccceeeeehhcCCcccceeeeeccCcccc-cccc-------------ccceEEEecccCCEEecCccc
Confidence 4568999999999 999988776554 3332 278999999999999999874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-17 Score=180.05 Aligned_cols=303 Identities=12% Similarity=0.076 Sum_probs=217.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..+++|+.||.|..||..+++.+..+..+.....+..+. ++.+++|+.|+.|+.||..+|+.+..+..+.......
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~ 205 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 205 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE
Confidence 46789999999999999999999998877665544444453 5689999999999999999999998887655444444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+. ++.+++++.|+.++.||..+++.++.+..+........+ ++..+++++.+|.+..||..+ ++.+..+....
T Consensus 206 ~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 279 (445)
T 2ovr_B 206 HLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHT 279 (445)
T ss_dssp EEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--TEEEEEECCCS
T ss_pred Eec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--CcEeEEecCCC
Confidence 443 478999999999999999999999888765544444444 458899999999999999988 88887776554
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
....+..+ ++..+++++.++.|.+|| .+++.+..+......... +.. .++.+++++.||.|..||..+++.+..
T Consensus 280 ~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~--~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 280 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MEL-KDNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--EEE-ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEE--EEE-eCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 44344444 788999999999999999 899988776543322211 111 356888999999999999999999887
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-----ccCCcccc
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-----ELQGDIFS 798 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 798 (829)
+........... +...+++.+++++.||.|.+||..++. ....+ ......+.
T Consensus 355 ~~~~~~~~~~v~----------~~~~~~~~l~s~~~dg~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 355 LQGPNKHQSAVT----------CLQFNKNFVITSSDDGTVKLWDLKTGE-------------FIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp ECSTTSCSSCEE----------EEEECSSEEEEEETTSEEEEEETTTCC-------------EEEEEEECTTGGGTCEEE
T ss_pred EccCCCCCCCEE----------EEEECCCEEEEEeCCCeEEEEECCCCc-------------eeeeeeccccCCCCceEE
Confidence 764221111000 001126789999999999999988662 22222 01111222
Q ss_pred cceEE--CCEEEEeeeCCe----EEEEeccc
Q 003331 799 SPVMI--GGRVFVGCRDDY----IYCIALET 823 (829)
Q Consensus 799 s~~~~--~~~l~vg~~~g~----l~~~d~~t 823 (829)
+.... +..+.+|+.||. |+.||...
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 22222 235567788886 99998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-17 Score=178.60 Aligned_cols=320 Identities=11% Similarity=0.062 Sum_probs=220.2
Q ss_pred CCe-EEEEecCCCcEEEEEC----CCCcEEEE------EEc----------CCceeeceEEeeCCcEEEEEEeCCEEEEE
Q 003331 485 SDI-YLFVGSHSHKFICADA----KRSSVLWE------IKL----------EGRIECSAAVLADFSQVVVGCYKGKIYFL 543 (829)
Q Consensus 485 ~~~-~l~igs~~g~l~~~d~----~tg~~~w~------~~~----------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~ 543 (829)
++. .|++|+.++.|..||. .+++..|. +.. +.....+..+++++..+++++.|+.|+.|
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 455 8999999999999999 99995443 322 22234567788888999999999999999
Q ss_pred EcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc---------------ccccee
Q 003331 544 DYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI---------------FGSPAI 608 (829)
Q Consensus 544 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~---------------~~~~~~ 608 (829)
| .+|+.+..+..+........+.+++..+++++.++.++.||..+++.+..+...... .....+
T Consensus 136 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (425)
T 1r5m_A 136 N-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW 214 (425)
T ss_dssp E-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE
T ss_pred e-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE
Confidence 9 788888888766655566677777888999999999999999999998887665432 444555
Q ss_pred ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-Cc
Q 003331 609 DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GP 686 (829)
Q Consensus 609 ~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~ 686 (829)
.+ ++.+++++.+|.++.||..+ ++.+..+...........+.+++..+++++.++.|.+|| .+++.+..+... ..
T Consensus 215 ~~-~~~~~~~~~~g~i~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 291 (425)
T 1r5m_A 215 VD-DDKFVIPGPKGAIFVYQITE--KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS 291 (425)
T ss_dssp EE-TTEEEEECGGGCEEEEETTC--SSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC
T ss_pred cC-CCEEEEEcCCCeEEEEEcCC--CceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc
Confidence 54 57899999999999999987 666666655544556677777888999999999999999 888777666532 22
Q ss_pred eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 687 IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 687 ~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
+.... ...++.+++++.+|.|+.||..+++.+..+............ ..++..+++++.+|.|++|
T Consensus 292 i~~~~---~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~-----------s~~~~~l~~~~~dg~i~i~ 357 (425)
T 1r5m_A 292 IVSAS---WVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRI-----------SQDGQKYAVAFMDGQVNVY 357 (425)
T ss_dssp EEEEE---EETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEE-----------CTTSSEEEEEETTSCEEEE
T ss_pred EEEEE---ECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEE-----------cCCCCEEEEEECCCeEEEE
Confidence 32221 223458889999999999999999998877654332221111 2237899999999999999
Q ss_pred EeecCcccccccccc-------ccceeeeeeccCCc--ccccceE--ECCEEEEeeeCCeEEEEecc
Q 003331 767 RVNLDVTGKENQSKD-------HMVQEFAKLELQGD--IFSSPVM--IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 767 d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~s~~~--~~~~l~vg~~~g~l~~~d~~ 822 (829)
|..++.......... ........+..... .+.+... .+..|++++.||.|+.||.+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 358 DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 998653100000000 00002233332211 3333333 24578899999999999975
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-17 Score=169.82 Aligned_cols=267 Identities=11% Similarity=0.083 Sum_probs=206.9
Q ss_pred CeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..|+.|+.|+.|..||..+++. .|.+..+.....+..+..++..+++++.|+.|..||..+|+.+..+..+......
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEE
Confidence 45788999999999999887754 4666655555566778888889999999999999999999998888765544445
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
..+.+++..+++++.++.+..||..+++..+.+...........+.+++..+++++.+|.|..||+.+ ++.+..+...
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--~~~~~~~~~h 205 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKLLHTLEGH 205 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcEEEEEccc
Confidence 66777888999999999999999999999888877666666777888788999999999999999988 8887777655
Q ss_pred CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 644 VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
.....+..+.+++..++.++.++.|.+|| .+++....+.... .+....+.+ .+..++.++.||.|..||..+++.+
T Consensus 206 ~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 206 AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP--DDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 54456777888888999999999999999 8888776554332 232221111 2457888899999999999999988
Q ss_pred EEEecCC-ccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 722 WEYSVGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 722 w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
..+.... .+....+. .++..+++++.||.|.+||.
T Consensus 284 ~~~~~h~~~v~~v~~s------------~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 284 HTFFDHQDQVWGVKYN------------GNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEECCCSSCEEEEEEC------------TTSSEEEEEETTCCEEEEEC
T ss_pred EEEcCCCCcEEEEEEC------------CCCCEEEEEeCCCeEEEEeC
Confidence 7765433 22222222 23778999999999999985
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-17 Score=165.65 Aligned_cols=237 Identities=14% Similarity=0.155 Sum_probs=167.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-eeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~ 562 (829)
.+..|++++.++.|++||.+||+++|++..+.. ....+.+.++++ +++ +.++.|++||+ +|+++|++..+. ....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE-ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE-eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 467899999999999999999999999987652 223455666665 455 56889999998 999999998753 2233
Q ss_pred eeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcc------cccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 563 QPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSI------FGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~------~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
...+..+++.+++.+. ++.++++|+ +|+.+|++...... ........+++.+++.+.++.|++||++ |+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---G~ 156 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---GQ 156 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT---SC
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC---CC
Confidence 3344556666766665 778999996 89999998754321 1112344556777777788999999976 89
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-c--eeecC-cccccCCCeEEEEeeCC--
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-P--IFAGP-CTSFALPSQVLICSRNG-- 708 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~--~~~~~-~~~~~~~~~i~~~t~~g-- 708 (829)
.+|++......+. .....+++.+++++.++.|+++| .+|+++|++.... + .+..+ ......++.+|+++.+|
T Consensus 157 ~~w~~~~~~~~~~-~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~ 235 (276)
T 3no2_A 157 LLNSVKLSGTPFS-SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD 235 (276)
T ss_dssp EEEEEECSSCCCE-EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred EEEEEECCCCccc-eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence 9999987644433 33444556666666677899999 7899999997421 1 11111 12234578899988533
Q ss_pred ---------eEEEEeCCCCcEEEEEecCCcc
Q 003331 709 ---------SIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 709 ---------~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
.++.+++ +|+++|++.....+
T Consensus 236 ~~~~~~~~~~~~~~~~-~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 236 REAGKGKHPQLVEIDS-EGKVVWQLNDKVKF 265 (276)
T ss_dssp TTGGGSCCCSEEEECT-TSBEEEEECCTTTS
T ss_pred ccccccCCceEEEECC-CCCEEEEecCcccc
Confidence 5888885 89999999765544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-20 Score=204.18 Aligned_cols=150 Identities=18% Similarity=0.189 Sum_probs=116.0
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhC-----CCceEEeecCccccccccccccccCCCcccc--------------
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLF-----PNISILNLYGSTEVSGDCTYFDCKRLPSILE-------------- 73 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-----~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~-------------- 73 (829)
...++++||.+++|||++++++++++.+.+ ++++++|.||+||+++.++.......+....
T Consensus 306 ~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 385 (480)
T 3t5a_A 306 AGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPC 385 (480)
T ss_dssp TTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCC
T ss_pred cccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeec
Confidence 456789999999999999999999999987 4568999999999998776544322111000
Q ss_pred --cCCCCccccccccCCcEEEEecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcc
Q 003331 74 --MSTLKSVPIGLPISNCDIVLVESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQT 147 (829)
Q Consensus 74 --~~~~~~~~~G~p~~~~~~~i~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 147 (829)
.......++|+|++ ++++|+|++. +.++.|||+|+|++++.||+++|+.|++.|...+..+. ....+++
T Consensus 386 ~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~----~~~~~~~ 460 (480)
T 3t5a_A 386 AGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPS----PGTPEGP 460 (480)
T ss_dssp CSSSCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCC----TTCCCCC
T ss_pred CCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeCCccccccccCcchhHHHHhhhhcccc----CCCCCCC
Confidence 00224568999999 9999999764 56778999999999999999999999999964332110 0112568
Q ss_pred eEecCceEEEccCCcEEEEee
Q 003331 148 YFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 148 ~~~TGDl~~~~~~G~l~~~GR 168 (829)
||+|||+|+++ ||.|+|+||
T Consensus 461 w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 461 WLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp BEEEEEEEEEE-TTEEEECC-
T ss_pred eeeccceeeEE-CCEEEEeCC
Confidence 99999999996 999999998
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-16 Score=174.98 Aligned_cols=268 Identities=12% Similarity=0.130 Sum_probs=197.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
+++.++.|+.||.|..||..+++.++.+..+.....+..+.+++ .+++|+.|+.|..||..+|+.+..+..+.......
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 209 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 209 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEE
Confidence 35689999999999999999999999888776655666676654 89999999999999999999988887554433333
Q ss_pred eee--cCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------------------CCcccccceeecCCCEEEEEecC
Q 003331 565 VVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------------------GGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 565 ~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------------------~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
.+. +++..+++++.|+.++.||..+++....... .+.......+..++..+++++.+
T Consensus 210 ~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 289 (464)
T 3v7d_B 210 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 289 (464)
T ss_dssp EEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred EEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC
Confidence 333 3457789999999999999988764322110 11111112234456889999999
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCe
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 700 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (829)
|.+..||..+ ++.+...........+..+.+++..+++++.+|.|.+|| .+|+.+..+.......... .. .+..
T Consensus 290 ~~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~-~~~~ 364 (464)
T 3v7d_B 290 NTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL--RL-SDKF 364 (464)
T ss_dssp SCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EE-CSSE
T ss_pred CeEEEEECCC--CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEE--EE-cCCE
Confidence 9999999987 888877766555556777888889999999999999999 8999888776443222211 12 2568
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++.||.|..||..+++..+............+.. ++..+++++ +|.|.+||..++
T Consensus 365 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~------------~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 365 LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV------------SDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEE------------CSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEe------------CCCEEEEec-CCeEEEEECCCC
Confidence 8999999999999999998887766444333222222 266777777 899999999876
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-17 Score=175.83 Aligned_cols=271 Identities=8% Similarity=-0.009 Sum_probs=203.0
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+..+..++.|+.|+.|..||..+|+....+..+.....+..+.+++..+++|+.|+.|..||..+++.+..+..+.....
T Consensus 117 ~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~ 196 (410)
T 1vyh_C 117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196 (410)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE
Confidence 33567899999999999999999998887777666566778888888999999999999999999998877766555555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++|+.|+.++.||..+|+++..+..+........+..++..++.++.+|.+..||..+ ++..-.+..
T Consensus 197 ~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--~~~~~~~~~ 274 (410)
T 1vyh_C 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELRE 274 (410)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--CceeeEecC
Confidence 566777778999999999999999999998888776655555556666678899999999999999987 665554443
Q ss_pred CCcceeeeeeeec--------------------CCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCe
Q 003331 643 EVPAFASLCITSA--------------------NRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQ 700 (829)
Q Consensus 643 ~~~~~~s~~~~~~--------------------~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~ 700 (829)
......+..+.++ +..++.|+.++.|.+|| .+|+.+..+.... .+....+ ...+..
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~--~~~g~~ 352 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF--HSGGKF 352 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--CSSSSC
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE--cCCCCE
Confidence 3333333333332 55789999999999999 8888877665432 2222211 112456
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
++.++.||.|+.||..+++.+..+..+........+ ...+..+++|+.||.|.+|+.
T Consensus 353 l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~-----------~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF-----------HKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE-----------CSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEE-----------cCCCCEEEEEeCCCcEEEEeC
Confidence 888999999999999999887776644432222212 123678999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-16 Score=165.87 Aligned_cols=267 Identities=10% Similarity=-0.011 Sum_probs=201.0
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCe
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGE 559 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~ 559 (829)
.++..++.|+.||.|..||..+++....+..+.....+..+++++..+++|+.|+.+..||..+++ ....+..+..
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 356789999999999999999999888887777666677888899999999999999999988763 3333433433
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
......+.+ ++.+++++.|+.+..||..+++.+..+..+.....+..+.+++..++.++.+|.+..||..+ +.....
T Consensus 145 ~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--~~~~~~ 221 (340)
T 1got_B 145 YLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQT 221 (340)
T ss_dssp CEEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEEEE
T ss_pred cEEEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CeeEEE
Confidence 333333443 46789999999999999999999888776655556666777678899999999999999987 777766
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC---ceeecCccccc-CCCeEEEEeeCCeEEEEe
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG---PIFAGPCTSFA-LPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~---~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d 714 (829)
+........+..+.+++..++.++.++.|..|| .+++.+..+.... .+.+. ... .+..+.+|+.||.|..||
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV---SFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE---EECTTSSEEEEEETTSEEEEEE
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE---EECCCCCEEEEECCCCeEEEEE
Confidence 665555556777888899999999999999999 8887776654332 22221 122 245688889999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
..+++.+..+..+........+ ..++..++.++.||.|.+||
T Consensus 299 ~~~~~~~~~~~~h~~~v~~~~~-----------s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADRAGVLAGHDNRVSCLGV-----------TDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEEECCSSCEEEEEE-----------CTTSSCEEEEETTSCEEEEC
T ss_pred cccCcEeeEeecCCCcEEEEEE-----------cCCCCEEEEEcCCccEEecC
Confidence 9999887766544332222111 12377899999999999985
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-16 Score=162.02 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=205.9
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..++.|+.|+.+..||..+++....+..+.....+..+.+++..+++++.|+.|..||..+++.+..+..+.....
T Consensus 32 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~ 111 (312)
T 4ery_A 32 SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 111 (312)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence 34567899999999999999999998877766655556778888889999999999999999999999888876665555
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++++.|+.++.||..+++.+..+..+........+.+++..+++++.+|.+..||..+ ++.+.....
T Consensus 112 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~ 189 (312)
T 4ery_A 112 CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--GQCLKTLID 189 (312)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeeEEec
Confidence 556777788999999999999999999999888776665566666777778899999999999999987 666554432
Q ss_pred -CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-eecCcc-cccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 643 -EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-FAGPCT-SFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 643 -~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~-~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.........+.+++..+++++.++.|..|| .+++.+..+...... ...... ....+..+..++.||.|+.||..++
T Consensus 190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 223345566777888999999999999999 888877666533211 111000 1122446778889999999999999
Q ss_pred cEEEEEecCCccccccccccccccccccccCCCcEEEEEc--cCCcEEEEEee
Q 003331 719 NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT--SSGSIHILRVN 769 (829)
Q Consensus 719 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~G~l~~~d~~ 769 (829)
+.+..+..+......... .+.+..++.++ .||.|.+|+.+
T Consensus 270 ~~~~~~~~h~~~v~~~~~-----------~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 EIVQKLQGHTDVVISTAC-----------HPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEECCCSSCEEEEEE-----------CSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhhccCCcEEEEee-----------cCcCCceEEEEccCCccEEEecCC
Confidence 988777644432222211 22367777775 58999999753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-17 Score=177.89 Aligned_cols=318 Identities=12% Similarity=0.006 Sum_probs=215.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..++.|+.++.++.||..+++....+..+ .+.....+..++..+++|+.|+.|..||..+++.+..+..+.......
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 145 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL 145 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE
T ss_pred cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE
Confidence 4567889999999999999887654333333 333444567788899999999999999999998887765555555566
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+.+++..+++++.|+.++.||..+++.+..+..+........+.+++..++.++.+|.+..||..+ ++.+..+....
T Consensus 146 ~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~ 223 (420)
T 3vl1_A 146 KFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT--GTTIHTFNRKE 223 (420)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--TEEEEEECBTT
T ss_pred EECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC--CceeEEeecCC
Confidence 6777778999999999999999999988887776666666677777788999999999999999988 88777765321
Q ss_pred c------------------------ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccC
Q 003331 645 P------------------------AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFAL 697 (829)
Q Consensus 645 ~------------------------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~ 697 (829)
. ......+.+++..+++++.+|.|..|| .+++........ ..+....+ .. .
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~-~ 301 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV-DG-N 301 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE-CS-S
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE-eC-C
Confidence 1 111223445677899999999999999 888877766432 22322211 11 2
Q ss_pred CC-eEEEEeeCCeEEEEeCCCCcE-EEEEec-CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003331 698 PS-QVLICSRNGSIYSFEQESGNL-LWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 698 ~~-~i~~~t~~g~l~~~d~~tG~~-~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
+. .+++++.+|.|+.||..+++. +..+.. ........... .+..+++++.||.|.+||.......
T Consensus 302 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~------------~~~~l~s~~~d~~v~iw~~~~~~~~ 369 (420)
T 3vl1_A 302 NANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA------------AGALFVSSGFDTSIKLDIISDPESE 369 (420)
T ss_dssp CTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE------------TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC------------CCCEEEEecCCccEEEEeccCCCCC
Confidence 23 788999999999999998754 444443 22222211221 2678999999999999998764221
Q ss_pred cccccccccceeeeeeccCCcccccceE--EC---CEEEEeeeCCeEEEEeccc
Q 003331 775 KENQSKDHMVQEFAKLELQGDIFSSPVM--IG---GRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~---~~l~vg~~~g~l~~~d~~t 823 (829)
......... .. .......+....+ .+ +.++..+.+|.+..|+.++
T Consensus 370 ~~~~~~~~~-~~---~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 370 RPAIEFETP-TF---LVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEECTTSC-EE---ECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred ccceeccCc-cE---EccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 110000000 00 0111111111111 22 3688888899999998764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-15 Score=158.97 Aligned_cols=248 Identities=10% Similarity=0.019 Sum_probs=183.2
Q ss_pred EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC
Q 003331 511 EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590 (829)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg 590 (829)
.+..+.....+..+++++..+++++.|+.|..||..+++.+..+..+........+.+++..+++|+.|+.|+.||..+|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~ 87 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 34444444557788899999999999999999999999998888766655555567777889999999999999999999
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeE
Q 003331 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITS-ANRHVICCLVDGHV 668 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i 668 (829)
+.+..+..+.....+..+.+++..++.++.||.|..||..+ + .....+..+.....+..+.+ ++..++.|+.++.|
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG--TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC--CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99988877766666777777788999999999999999886 5 33333433444445566665 45689999999999
Q ss_pred EEEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003331 669 VALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
..|| .++........+. .+....+.....+..++.++.||.|..||..+++.+..+..+.........
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~--------- 236 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--------- 236 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE---------
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE---------
Confidence 9999 7666555444322 222111111123457888999999999999999988777654432222211
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecC
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+.+..++.++.||.|.+||..++
T Consensus 237 --~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 237 --HPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp --CSSSSEEEEEETTSCEEEEETTTC
T ss_pred --CCCCCEEEEEcCCCeEEEEECCCC
Confidence 123778999999999999998765
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-16 Score=170.25 Aligned_cols=277 Identities=15% Similarity=0.100 Sum_probs=200.2
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~ 598 (829)
..+..+.+++..+++|+.|+.|..||..+|+....+..+........+.+++..+++|+.|+.|..||..+++++..+..
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~ 190 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG 190 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC
Confidence 44566777888999999999999999999998888776655555566777788999999999999999999999888776
Q ss_pred CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI 677 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~ 677 (829)
+.....+..+.+++..++.++.++.+..||..+ +..+..+...........+.+++..++.++.++.|.+|| .+++.
T Consensus 191 h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~ 268 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCce
Confidence 666666677777778999999999999999988 777766655554455566667788899999999999999 88877
Q ss_pred EEEeecCCc-eeecCcccc------------------cCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccc
Q 003331 678 IWRCRTGGP-IFAGPCTSF------------------ALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDE 738 (829)
Q Consensus 678 ~w~~~~~~~-~~~~~~~~~------------------~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 738 (829)
.-.+..... +....+.+. ..+..++.|+.||.|..||..+|+.+..+..+........+
T Consensus 269 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~-- 346 (410)
T 1vyh_C 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF-- 346 (410)
T ss_dssp EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--
T ss_pred eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEE--
Confidence 655433221 111100000 01346888999999999999999988777644432222211
Q ss_pred ccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeE
Q 003331 739 HLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYI 816 (829)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l 816 (829)
...+.++++++.||.|++||..++. ....+..+...+.+..+ .+..|..|+.||.|
T Consensus 347 ---------~~~g~~l~s~s~D~~i~vwd~~~~~-------------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 347 ---------HSGGKFILSCADDKTLRVWDYKNKR-------------CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp ---------CSSSSCEEEEETTTEEEEECCTTSC-------------CCEEEECCSSCEEEEEECSSSSCEEEEETTSEE
T ss_pred ---------cCCCCEEEEEeCCCeEEEEECCCCc-------------eEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 1237889999999999999987552 12222222222333333 24578889999999
Q ss_pred EEEec
Q 003331 817 YCIAL 821 (829)
Q Consensus 817 ~~~d~ 821 (829)
..|+.
T Consensus 405 ~vW~~ 409 (410)
T 1vyh_C 405 KVWEC 409 (410)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-16 Score=164.15 Aligned_cols=305 Identities=10% Similarity=0.044 Sum_probs=205.7
Q ss_pred CCeEEEEecCCCcEEEEECCC-CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE---EEEe--cCC
Q 003331 485 SDIYLFVGSHSHKFICADAKR-SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ--TCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~---w~~~--~~~ 558 (829)
++..+.++..++.+..++... .+..... .+.....+..+++++..+++++ |+.|..||..+++.. ..+. .+.
T Consensus 20 dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~ 97 (337)
T 1gxr_A 20 DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRD 97 (337)
T ss_dssp SSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTT
T ss_pred CCCEEEeecCCCcEeccccCCccccceec-cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCC
Confidence 445555555444444333222 2333323 3444455677888888888888 999999999887632 2222 233
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
.......+.+++..+++++.++.++.||..+++ ....+..+........+.+++..+++++.+|.+..||..+ ++.
T Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~--~~~ 175 (337)
T 1gxr_A 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTL 175 (337)
T ss_dssp SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--Cce
Confidence 444555667777889999999999999999887 4444444444455566666678999999999999999987 787
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
+..+...........+.+++..+++++.++.+..|| .+++.+........+....+. ..+..+++++.+|.|+.||.
T Consensus 176 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~~~~i~~~~~ 253 (337)
T 1gxr_A 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC--PTGEWLAVGMESSNVEVLHV 253 (337)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred eeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC--CCCCEEEEEcCCCcEEEEEC
Confidence 777765555556677777888999999999999999 888888777665555433221 12457888889999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (829)
.+++..........+....+ ..++..+++++.+|.|++||..++. ..........
T Consensus 254 ~~~~~~~~~~~~~~v~~~~~------------~~~~~~l~~~~~dg~i~~~~~~~~~-------------~~~~~~~~~~ 308 (337)
T 1gxr_A 254 NKPDKYQLHLHESCVLSLKF------------AYCGKWFVSTGKDNLLNAWRTPYGA-------------SIFQSKESSS 308 (337)
T ss_dssp TSSCEEEECCCSSCEEEEEE------------CTTSSEEEEEETTSEEEEEETTTCC-------------EEEEEECSSC
T ss_pred CCCCeEEEcCCccceeEEEE------------CCCCCEEEEecCCCcEEEEECCCCe-------------EEEEecCCCc
Confidence 98876533222333322222 2237889999999999999987652 1222222222
Q ss_pred ccccceE--ECCEEEEeeeCCeEEEEec
Q 003331 796 IFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 796 ~~~s~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
+ .+... .+..|++++.||.|+.||.
T Consensus 309 v-~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 V-LSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp E-EEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred E-EEEEECCCCCEEEEecCCCeEEEEEE
Confidence 2 22222 3568888999999999986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-15 Score=159.65 Aligned_cols=292 Identities=12% Similarity=0.083 Sum_probs=201.2
Q ss_pred EECCCC-cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC
Q 003331 501 ADAKRS-SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579 (829)
Q Consensus 501 ~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~ 579 (829)
+|+.++ ++...+..+.....+..+ .+++.+++++.||.|+.||..+++....+..+........+.+++..+++++.+
T Consensus 2 ~d~~~~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 80 (313)
T 3odt_A 2 IDPFTGYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD 80 (313)
T ss_dssp ---CCCCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT
T ss_pred CCccccHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC
Confidence 455555 455556666555556666 777899999999999999999998887777666555666777788899999999
Q ss_pred CeEEEEEcCCC---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-c
Q 003331 580 HNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-A 655 (829)
Q Consensus 580 g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~ 655 (829)
+.+..|+..+. +.+..+..+........++ ++.+++++.+|.+..|| . ++..................+ +
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~--~~~~~~~~~~~~~v~~~~~~~~~ 154 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--E--GSLVYNLQAHNASVWDAKVVSFS 154 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--T--TEEEEEEECCSSCEEEEEEEETT
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--C--CcEEEecccCCCceeEEEEccCC
Confidence 99999997653 4455554444444444453 58999999999999999 3 666766665555445555555 7
Q ss_pred CCEEEEEeeCCeEEEEcCCCCEEEEee--cCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc
Q 003331 656 NRHVICCLVDGHVVALDSSGSIIWRCR--TGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS 733 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d~~g~~~w~~~--~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 733 (829)
++.+++++.++.+..|| .++....+. ....+... ....++.+++++.+|.|+.||..+++.+..+..+......
T Consensus 155 ~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHL---AVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp TTEEEEEETTSCEEEEE-TTEEEEEECSSCSSCEEEE---EEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CCEEEEEECCCCEEEEe-cCceEEEEeccCcccEEEE---EEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 88999999999999999 233333333 22223222 2233566899999999999999999998887744432222
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeee
Q 003331 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCR 812 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~ 812 (829)
..... ++.+++++.+|.|++||..++ +....+..+...+..... .++.+++++.
T Consensus 231 ~~~~~------------~~~l~~~~~dg~v~iwd~~~~-------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 285 (313)
T 3odt_A 231 IKLLP------------NGDIVSCGEDRTVRIWSKENG-------------SLKQVITLPAISIWSVDCMSNGDIIVGSS 285 (313)
T ss_dssp EEECT------------TSCEEEEETTSEEEEECTTTC-------------CEEEEEECSSSCEEEEEECTTSCEEEEET
T ss_pred EEEec------------CCCEEEEecCCEEEEEECCCC-------------ceeEEEeccCceEEEEEEccCCCEEEEeC
Confidence 22221 337899999999999998765 223333333322333322 2567888999
Q ss_pred CCeEEEEecccccccc
Q 003331 813 DDYIYCIALETQHLEE 828 (829)
Q Consensus 813 ~g~l~~~d~~tg~~~~ 828 (829)
||.|+.||.++++...
T Consensus 286 dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 286 DNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TSCEEEEESCGGGCCC
T ss_pred CCcEEEEeCCCCceee
Confidence 9999999999987653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-15 Score=157.08 Aligned_cols=291 Identities=11% Similarity=0.070 Sum_probs=205.4
Q ss_pred cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEE
Q 003331 507 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 507 ~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d 586 (829)
+....+..+.....+..+++++..+++++.|+.|..||..+++....+..+........+.+++..+++++.|+.+..||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 33444444555556777888888999999999999999999998887766555555566777788999999999999999
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
..+++.+..+..+........+.+++..++.++.+|.+..||+.+ ++.+..+........+..+.+++..+++++.++
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999888776665555666777778999999999999999987 777776665554456667777888999999999
Q ss_pred eEEEEc-CCCCEEEEeecC--CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccc
Q 003331 667 HVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLK 743 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~ 743 (829)
.|..|| .+++.+...... .++....+ ...+..+++++.+|.|..||..+++.+..+.............
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------ 243 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN------ 243 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE------
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE------
Confidence 999999 888876554322 12221111 1124578888999999999999999887765433221111000
Q ss_pred cccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee--eCCeEEEE
Q 003331 744 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC--RDDYIYCI 819 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~--~~g~l~~~ 819 (829)
.....+..+++++.||.|++||..++ +....+..+...+.+... .+..+..++ .|+.|..|
T Consensus 244 --~~~~~~~~l~sg~~dg~i~vwd~~~~-------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 244 --FSVTGGKWIVSGSEDNLVYIWNLQTK-------------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp --EECSSSCEEEECCTTSCEEEEETTTC-------------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred --EEeCCCcEEEEECCCCEEEEEECCCc-------------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEe
Confidence 00123678899999999999998765 223333322222222222 245666665 58899999
Q ss_pred ecc
Q 003331 820 ALE 822 (829)
Q Consensus 820 d~~ 822 (829)
+.+
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-16 Score=170.44 Aligned_cols=266 Identities=15% Similarity=0.131 Sum_probs=197.0
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccc
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIF 603 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~ 603 (829)
+..+++.+++|+.|+.|+.||..+|+.+..+..+........+. ++.+++|+.||.++.||..+++.+..+..+....
T Consensus 125 ~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v 202 (445)
T 2ovr_B 125 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 202 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE
Confidence 33456789999999999999999999998887655444444454 4789999999999999999999998887665555
Q ss_pred ccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 604 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 604 ~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
....++ ++.+++++.+|.+..||..+ ++.++.............+ ++..+++++.+|.|..|| .+++.+..+.
T Consensus 203 ~~~~~~--~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (445)
T 2ovr_B 203 RCMHLH--EKRVVSGSRDATLRVWDIET--GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ 276 (445)
T ss_dssp EEEEEE--TTEEEEEETTSEEEEEESSS--CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred EEEEec--CCEEEEEeCCCEEEEEECCC--CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec
Confidence 555554 48899999999999999988 8877776654443333333 778899999999999999 8888887776
Q ss_pred cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 683 TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 ~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
... .+.... . .+..+++++.||.|..||..+++.+..+........... .+++.+++++.||
T Consensus 277 ~~~~~v~~~~---~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~-------------~~~~~l~~~~~dg 339 (445)
T 2ovr_B 277 GHTNRVYSLQ---F-DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-------------LKDNILVSGNADS 339 (445)
T ss_dssp CCSSCEEEEE---E-CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-------------EETTEEEEEETTS
T ss_pred CCCCceEEEE---E-CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEE-------------EeCCEEEEEeCCC
Confidence 432 232221 2 456789999999999999999999887764443222111 1267899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeecc---CCcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLEL---QGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.|.+||..++ +....+.. ....+.+....++.++.|+.||.|+.||..+++..
T Consensus 340 ~i~vwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 340 TVKIWDIKTG-------------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395 (445)
T ss_dssp CEEEEETTTC-------------CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEECCCC-------------cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCcee
Confidence 9999998765 22222222 22223333445778999999999999999988753
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-15 Score=160.01 Aligned_cols=269 Identities=9% Similarity=0.077 Sum_probs=197.4
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEE---EEEE--cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEe
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVL---WEIK--LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQ 555 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~---w~~~--~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~ 555 (829)
..++..+++++ +|.|..||..+++.. ..+. .+.....+..+.+++..+++++.|+.|+.||..+++ ....+.
T Consensus 60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~ 138 (337)
T 1gxr_A 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT 138 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE
T ss_pred ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc
Confidence 34566788887 899999999887532 2222 233445567788888899999999999999999887 444444
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
.+........+.+++..+++++.++.++.||..+++.+..+..+........+.+++..+++++.+|.++.||..+ ++
T Consensus 139 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~ 216 (337)
T 1gxr_A 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--GR 216 (337)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE
T ss_pred cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC--Cc
Confidence 4444444556666778899999999999999999999888876665566667777778999999999999999988 77
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
.+.......+ .....+.+++..+++++.++.+..|| .+++..........+....+. ..+..+++++.+|.|+.||
T Consensus 217 ~~~~~~~~~~-v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 217 QLQQHDFTSQ-IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA--YCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEEECSSC-EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEE
T ss_pred eEeeecCCCc-eEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEEC--CCCCEEEEecCCCcEEEEE
Confidence 7776654443 35667777888999999999999999 777654333223333322211 1245688888999999999
Q ss_pred CCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 715 QESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..+++.+........+....+. .++..+++++.+|.|++||..
T Consensus 294 ~~~~~~~~~~~~~~~v~~~~~s------------~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 294 TPYGASIFQSKESSSVLSCDIS------------VDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTTCCEEEEEECSSCEEEEEEC------------TTSCEEEEEETTSCEEEEEEE
T ss_pred CCCCeEEEEecCCCcEEEEEEC------------CCCCEEEEecCCCeEEEEEEe
Confidence 9999998776655554433222 237889999999999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-15 Score=155.63 Aligned_cols=242 Identities=10% Similarity=0.053 Sum_probs=181.1
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|+.|+.||.|..||..+++.+..+..+.....+..+.+++..+++|+.|+.|..||..+|+.+..+..+.....
T Consensus 22 sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~ 101 (304)
T 2ynn_A 22 HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (304)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE
Confidence 34677899999999999999999998888877766566778888889999999999999999999999988887766566
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++..+++|+.|+.|..||..++ .+...+..+........+.+ ++..++.++.||.|..||+.+ +......
T Consensus 102 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~--~~~~~~~ 179 (304)
T 2ynn_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC--SSCSEEE
T ss_pred EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC--CCcccee
Confidence 6677777889999999999999999887 44444444444445555655 456889999999999999876 4433333
Q ss_pred ccCC-cceeeeeee--ecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 641 ELEV-PAFASLCIT--SANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~-~~~~s~~~~--~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
.... .......+. .++..++.++.++.|..|| .+++.+..+.... .+....+. .....+..++.||.|..||.
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~s~s~Dg~i~iWd~ 257 (304)
T 2ynn_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH--PTLPIIISGSEDGTLKIWNS 257 (304)
T ss_dssp ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSCEEEEET
T ss_pred ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC--CCCCEEEEEcCCCeEEEEEC
Confidence 2221 122223333 3566899999999999999 8888877665433 22222111 12346888899999999999
Q ss_pred CCCcEEEEEecCC
Q 003331 716 ESGNLLWEYSVGD 728 (829)
Q Consensus 716 ~tG~~~w~~~~~~ 728 (829)
.+++.+..+..+.
T Consensus 258 ~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 258 STYKVEKTLNVGL 270 (304)
T ss_dssp TTCCEEEEECCSS
T ss_pred CCCceeeeccCCC
Confidence 9999988776543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.2e-15 Score=157.15 Aligned_cols=276 Identities=12% Similarity=0.032 Sum_probs=194.7
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--- 591 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--- 591 (829)
+.....+..+++++..+++++.|+.|+.||..+++.+..+..+........+.+++..+++|+.|+.+..||..+++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 33334466677788899999999999999999999988887766655566677788899999999999999988763
Q ss_pred -EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE
Q 003331 592 -CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
....+..+........+.+ ++.++.++.++.+..||+.+ ++.+..+..+.....+..+.+++..++.++.++.|..
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~-~~~l~s~s~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~ 210 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEE-TTEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeEEEecCCCccEEEEEECC-CCcEEEEECCCcEEEEECCC--CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 3333333333333333433 46789999999999999988 8877776655555566777778889999999999999
Q ss_pred Ec-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc---cccccccccccccccc
Q 003331 671 LD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQLKLE 745 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~~~~ 745 (829)
|| .+++.+..+.... .+....+.+ .+..+..++.||.|..||..+++.+..+..... +....
T Consensus 211 wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~----------- 277 (340)
T 1got_B 211 WDVREGMCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS----------- 277 (340)
T ss_dssp EETTTCSEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-----------
T ss_pred EECCCCeeEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE-----------
Confidence 99 8888876665332 232222111 245788899999999999999988776654332 11111
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEe
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d 820 (829)
..+++.++++|+.||.|.+||..++ +....+.-....+.+..+ .+..|..|+.||.|+.||
T Consensus 278 -~s~~g~~l~~g~~d~~i~vwd~~~~-------------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 -FSKSGRLLLAGYDDFNCNVWDALKA-------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -ECTTSSEEEEEETTSEEEEEETTTC-------------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -ECCCCCEEEEECCCCeEEEEEcccC-------------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 1234889999999999999998754 122222222222222222 245788899999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-15 Score=157.90 Aligned_cols=266 Identities=13% Similarity=0.125 Sum_probs=192.7
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG 604 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~ 604 (829)
++..+++|+.|+.|..||..+++. .|.+..+........+..+...+++++.|+.|+.||..+|+.+..+..+.....
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~ 126 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW 126 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC
T ss_pred CCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE
Confidence 356899999999999999877764 455655544444455666678899999999999999999999888876655555
Q ss_pred cceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003331 605 SPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
...+.+++..+++++.+|.+..|+.++ ++..+..........+..+.+++..+++++.++.|..|| .+++.+..+..
T Consensus 127 ~~~~spdg~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 127 TLAFSPDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp CEEECTTSSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEECCCCCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 667777788999999999999999988 777777766555566778888899999999999999999 88988776653
Q ss_pred CC-ceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 684 GG-PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 684 ~~-~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.. ++... ... .+..++.++.||.|..||..+++....+............ .+++..+++++.||
T Consensus 205 h~~~v~~l---~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-----------sp~~~~l~s~s~D~ 270 (321)
T 3ow8_A 205 HAMPIRSL---TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAF-----------CPDDTHFVSSSSDK 270 (321)
T ss_dssp CSSCCCEE---EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEE-----------CTTSSEEEEEETTS
T ss_pred cCCceeEE---EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEE-----------CCCCCEEEEEeCCC
Confidence 32 22221 122 2346788899999999999999887666543332221111 12378899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
.|.+||..++ +....+......+..... .+..|+.++.||.|..||.
T Consensus 271 ~v~iwd~~~~-------------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 271 SVKVWDVGTR-------------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CEEEEETTTT-------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred cEEEEeCCCC-------------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999998765 222222222222222222 3457888999999999985
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-15 Score=160.58 Aligned_cols=271 Identities=8% Similarity=0.000 Sum_probs=196.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc------EEEEEecC
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD------IYWTFQTC 557 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~------~~w~~~~~ 557 (829)
.++..|+.|+.|+.|..||..+++....+..+.....+..+++++..+++|+.|+.+..|+...+. ....+..+
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc
Confidence 356789999999999999999999887777776656677889999999999999999999875431 22233334
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec--CCCEEEEEecCCeEEEEEccCCCce
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE--VHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~--~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
........+.+++..+++++.|+.+..||..+++++..+..+........+.. ++..++.++.+|.+..||..+ ++
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~ 231 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQ 231 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CC
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--Cc
Confidence 44444555666777899999999999999999999887765544333333332 346899999999999999988 77
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEE
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSF 713 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~ 713 (829)
.+..+..+.....+..+.+++..++.++.++.+..|| .+++.+..+...........+... .+..+++++.|+.|+.|
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vw 311 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVW 311 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEE
Confidence 7766665555556777778889999999999999999 777665444332211111111122 24567888899999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
|..+|+.+-.+..+........+ .+++.++++++.||.|.+|+
T Consensus 312 d~~~~~~~~~l~~h~~~v~~l~~-----------spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 312 DVLKGSRVSILFGHENRVSTLRV-----------SPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ETTTCSEEEEECCCSSCEEEEEE-----------CTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCceEEEEECCCCcEEEEEE-----------CCCCCEEEEEcCCCCEEecC
Confidence 99999887665433322222111 22378899999999999984
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=165.93 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=136.4
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC--Ceeeee--eeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQ--PVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~--~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
+.||+++.||.|+++|.+||+++|+++.. ...... +.. ..++.+|++ +.||.||++|..+|..+|.+......
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~-~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR-LETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT-TTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc-ccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 58999999999999999999999999875 111110 111 123456665 68999999999999999988765444
Q ss_pred cccceee------------cCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcce-------eeeeee-----ecCCE
Q 003331 603 FGSPAID------------EVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAF-------ASLCIT-----SANRH 658 (829)
Q Consensus 603 ~~~~~~~------------~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~-------~s~~~~-----~~~~~ 658 (829)
..+|+.. ..++.+|+++.+|.++++|+.+ |+.+|.+....+.- .++.+. ..++.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN--GEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTT--CCEEEEESTTCBCC--------------------CCE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC--CcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 4444441 0358999999999999999998 99999998764321 111111 23578
Q ss_pred EEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcc--------cccCCCeEEEEeeCCeEEEEeCCCCcEEE-EEecCCc
Q 003331 659 VICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT--------SFALPSQVLICSRNGSIYSFEQESGNLLW-EYSVGDP 729 (829)
Q Consensus 659 l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~--------~~~~~~~i~~~t~~g~l~~~d~~tG~~~w-~~~~~~~ 729 (829)
++++..+..+.+.+++|+ +|..+.... ....+ ....++.+|+++.+|.|+++|..+|+.+| +.++..+
T Consensus 168 v~ig~~~y~v~~~~~sG~-~W~~~~s~~--~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 168 IVIGKTIFELGIHSYDGA-SYNVTYSTW--QQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp EEEEEEEEECEECCTTSC-CCCCEEEEE--ECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred EEEecceEEEEEECCCCC-eEEEecccc--cccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEEEeecCCCC
Confidence 999887777777777787 898764321 11110 01124677889999999999999999999 6655544
Q ss_pred c
Q 003331 730 I 730 (829)
Q Consensus 730 ~ 730 (829)
+
T Consensus 245 v 245 (339)
T 2be1_A 245 I 245 (339)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-15 Score=154.33 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=196.2
Q ss_pred CCeEEEEecCCCcEEEEECCC-----CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKR-----SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t-----g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
....++.|+.|+.|..||..+ +.....+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+..
T Consensus 29 ~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~ 108 (319)
T 3frx_A 29 QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS 108 (319)
T ss_dssp CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCC
Confidence 346899999999999999764 334455666666666778888999999999999999999999999888876655
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec------CCCEEEEEecCCeEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE------VHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~------~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
......+.+++..+++|+.|+.+..||.+. +.+..+..+........+.+ +...++.++.++.+..||+.+
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-- 185 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-- 185 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--
Confidence 555556777788899999999999999864 45544443333222222222 234788899999999999987
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
++....+..+.....+..+.+++..++.++.+|.|.+|| .+++.+..+.....+.+.. ...++..++++.++++..
T Consensus 186 ~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~sp~~~~la~~~~~~i~v 262 (319)
T 3frx_A 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA---FSPNRYWLAAATATGIKV 262 (319)
T ss_dssp TEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEE---ECSSSSEEEEEETTEEEE
T ss_pred chhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEE---EcCCCCEEEEEcCCCcEE
Confidence 766665555555556677888889999999999999999 8888888777655554433 333555666666777999
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|+..++.....+........... .. ........+++.++++|+.||.|++||..++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 263 FSLDPQYLVDDLRPEFAGYSKAA-EP--HAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTEEEEEEECCCCTTCCGGG-CC--CEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEeCcCeeeeccCccccccccCc-Cc--ceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99888776655542211100000 00 0001112345889999999999999998753
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-15 Score=156.28 Aligned_cols=274 Identities=10% Similarity=0.007 Sum_probs=203.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|++++.+|.|..||..+++....+..+.....+..+++++..+++++.|+.|+.||..+++.+..+.....+ .
T Consensus 41 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-~ 119 (369)
T 3zwl_B 41 NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPV-K 119 (369)
T ss_dssp CTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCE-E
T ss_pred cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCe-E
Confidence 335678999999999999999999999888766665667788888889999999999999999999999888755444 4
Q ss_pred eeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEEe-----------eccCC--cccccceeecCCCEEEEEecCCeE
Q 003331 563 QPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVYK-----------LPCGG--SIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w~-----------~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
...+.+++..+++++.+ +.++.||..++..... ..... .......+.+++..+++++.+|.|
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 199 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEE
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEE
Confidence 45667778888888888 9999999876532111 11111 134445566667889999999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
..||..+. ++.+...........+..+.+++..+++++.++.|.+|| .+++.+..+.....+....+. ..+..+++
T Consensus 200 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~ 276 (369)
T 3zwl_B 200 SKYDVSNN-YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVIT--PLKEFIIL 276 (369)
T ss_dssp EEEETTTT-TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSSSEEEE
T ss_pred EEEECCCC-cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEec--CCCceEEE
Confidence 99998851 455555555555556677777888999999999999999 899988887755544333221 12456777
Q ss_pred EeeCC--------------eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 704 CSRNG--------------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~~g--------------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.++ .+..||..+++.+..+..+......... ..++.++++++.||.|.+|+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-----------s~~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI-----------SPQGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE-----------CTTSSEEEEEETTSEEEEEEEC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE-----------CCCCCEEEEEcCCCeEEEEECc
Confidence 77776 7999999999988777644332222212 1237889999999999999998
Q ss_pred cC
Q 003331 770 LD 771 (829)
Q Consensus 770 ~~ 771 (829)
.+
T Consensus 346 ~~ 347 (369)
T 3zwl_B 346 KS 347 (369)
T ss_dssp HH
T ss_pred cc
Confidence 64
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.8e-15 Score=156.06 Aligned_cols=287 Identities=11% Similarity=0.075 Sum_probs=200.1
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+.....+..+++++..+++++.|+.|+.||..+++.+..+..+........+.+++..+++++.|+.|+.||..+++
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ 107 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34444445567788888899999999999999999999998887666555666677778899999999999999999999
Q ss_pred EEEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccCCCceEEEee---------ccCCc--ceeeeeeeec
Q 003331 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKALPFHTLWLH---------ELEVP--AFASLCITSA 655 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~~~g~~~w~~---------~~~~~--~~~s~~~~~~ 655 (829)
.+..+... .......+.+++..+++++.+ |.+..||..+......+.. ..... ......+.++
T Consensus 108 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWKSP-VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEECS-SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEeecC-CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 99888743 344456667777889988888 9999999876221111111 11111 3345566777
Q ss_pred CCEEEEEeeCCeEEEEc-CC-CCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc
Q 003331 656 NRHVICCLVDGHVVALD-SS-GSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
+..+++++.+|.|.+|| .+ ++.+..+.... .+....+.. .+..+++++.+|.|..||..+++.+..+.....+..
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 264 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP--DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC--CCCEEEEecCCceEEEEECCCCceeeeecCCCCcee
Confidence 88999999999999999 66 66666655432 332222111 245688889999999999999999888875554443
Q ss_pred ccccccccccccccccCCCcEEEEEccCC--------------cEEEEEeecCccccccccccccceeeeeeccCCcccc
Q 003331 733 SAYIDEHLQLKLESCLSIDRLVCICTSSG--------------SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS 798 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G--------------~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (829)
..+. ..+..+++++.++ .+.+||..++ +....+......+.
T Consensus 265 ~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-------------~~~~~~~~~~~~v~ 319 (369)
T 3zwl_B 265 AVIT------------PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-------------EEIGRVQGHFGPLN 319 (369)
T ss_dssp EEEC------------SSSSEEEEEECCC-------------CEEEEEETTTC-------------CEEEEEECCSSCEE
T ss_pred EEec------------CCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-------------cchhheecccCcEE
Confidence 3222 2378888888887 6777776544 22222222222223
Q ss_pred cceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 799 SPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 799 s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
+... .+..|+.++.||.|+.|+.+++.+
T Consensus 320 ~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 320 TVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 2333 356788899999999999988764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-15 Score=171.38 Aligned_cols=271 Identities=8% Similarity=0.066 Sum_probs=201.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC----cEEEEEEcCCce-eeceEEee--CCcEEEEEEeCCEEEEEEcCCC--------c
Q 003331 485 SDIYLFVGSHSHKFICADAKRS----SVLWEIKLEGRI-ECSAAVLA--DFSQVVVGCYKGKIYFLDYLTG--------D 549 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg----~~~w~~~~~~~~-~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG--------~ 549 (829)
++..+++++ ++.+..||..++ +....+..+... ..+..+++ ++..+++++.|+.|..||..+| +
T Consensus 29 dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 107 (615)
T 1pgu_A 29 TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 107 (615)
T ss_dssp TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc
Confidence 456777777 678999999999 777777766665 67788988 9999999999999999998766 5
Q ss_pred EEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeE
Q 003331 550 IYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRL 624 (829)
Q Consensus 550 ~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l 624 (829)
.+..+..+........+.+++..+++++.+ +.++.|| +++.+..+..+........+.+++. .++.++.+|.+
T Consensus 108 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v 185 (615)
T 1pgu_A 108 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 185 (615)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEE
T ss_pred ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcE
Confidence 555565555445556677778888888776 6788888 6677777766655556666666555 78899999999
Q ss_pred EEEEccCCCceEEEeeccCCc---ceeeeeeeec-CCEEEEEeeCCeEEEEc-CCCCEEEEe-----ecCCceeecCccc
Q 003331 625 TAISVKALPFHTLWLHELEVP---AFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRC-----RTGGPIFAGPCTS 694 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~---~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g~~~w~~-----~~~~~~~~~~~~~ 694 (829)
..||..+ ++.+..+..... ...+..+.++ +..+++++.++.|.+|| .+++.+..+ .....+....+
T Consensus 186 ~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~-- 261 (615)
T 1pgu_A 186 VFYQGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-- 261 (615)
T ss_dssp EEEETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE--
T ss_pred EEEeCCC--cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEE--
Confidence 9999887 888777765554 5567778888 88899999999999999 899988777 22333433322
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
. .+..+++++.+|.|..||..+++.+..+............. . ....++.+++++.+|.|++||..++
T Consensus 262 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 262 L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG--V------VATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE--E------EEEETTEEEEEETTSCEEEEETTEE
T ss_pred c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE--E------EeCCCCeEEEEECCCCEEEEECCCC
Confidence 1 45678888999999999999999988877652110000000 0 0013789999999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-14 Score=152.96 Aligned_cols=264 Identities=11% Similarity=0.103 Sum_probs=191.9
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEecCCeeeeeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVV 566 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 566 (829)
.++.++.++.|+.||..+++.++.+..+..+ .++.+++++..+++. +.++.|+.||..+|+.++.+..+..+ ....+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v-~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCc-ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCc-cceEE
Confidence 3556778899999999999999888776654 467788888887654 47999999999999999988876644 34456
Q ss_pred ecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 567 DAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 567 ~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.+++..++++ +.++.|+.||..+++.+..+..+... ..+.+.+++..+| .++.++.|+.||..+ ++.+.....+.
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTVSVGR 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECCS
T ss_pred CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCc-ceEEECCCCCEEEEEeCCCCEEEEEECCC--CcEEEEEecCC
Confidence 6667777654 46699999999999998887765443 4556666667775 555689999999987 88877776544
Q ss_pred cceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe---eCCeEEEEeCCCCc
Q 003331 645 PAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS---RNGSIYSFEQESGN 719 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t---~~g~l~~~d~~tG~ 719 (829)
.. ....+.++++.+++. ..++.|+.+| .+++..........+....+ ...+..+++++ .++.|+.||..+++
T Consensus 159 ~~-~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~~g~~l~~~~~~~~~~~v~~~d~~~~~ 235 (391)
T 1l0q_A 159 SP-KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV--NPEGTKAYVTNVDKYFNTVSMIDTGTNK 235 (391)
T ss_dssp SE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE--CTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred Cc-ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE--CCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence 33 556677778788654 5678999999 88887776665443332211 11244688887 58999999999999
Q ss_pred EEEEEecCCccccccccccccccccccccCCCcEEEE-EccCCcEEEEEeecC
Q 003331 720 LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI-CTSSGSIHILRVNLD 771 (829)
Q Consensus 720 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~G~l~~~d~~~~ 771 (829)
.+..+..+.......+ ..++..+|+ ++.++.|++||..++
T Consensus 236 ~~~~~~~~~~~~~~~~------------s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 236 ITARIPVGPDPAGIAV------------TPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEECCSSEEEEEE------------CTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEecCCCccEEEE------------ccCCCEEEEEcCCCCEEEEEECCCC
Confidence 8887776544322111 123666754 577999999998865
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-16 Score=181.72 Aligned_cols=316 Identities=12% Similarity=0.106 Sum_probs=189.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
.+.++.||+++.+| |+.||..++++.. +.... ......++.+.++.+|+|+.+++|+++|.++++...........
T Consensus 138 ~d~~g~lwi~t~~g-l~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~ 215 (795)
T 4a2l_A 138 EISPEQLLISTPEG-LIMFDIKESKFID-DSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTK 215 (795)
T ss_dssp EEETTEEEEEETTE-EEEEETTTTEEEC-SSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CC
T ss_pred ECCCCCEEEEECCc-eEEEECCCCEEEe-ccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCC
Confidence 45688999999855 9999998876532 11110 10012233344578999998777999998888765421111111
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
....++.+.++.+|+|+.+++|+.+|..+++........ ...+.+... +.++.+|+||.+ +|+.+|..+
T Consensus 216 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-d~~g~lWigt~~-Gl~~~~~~~-- 291 (795)
T 4a2l_A 216 QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAM-DSQNRLWIGTFN-DLNIYHEGT-- 291 (795)
T ss_dssp CEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEE-CTTSCEEEEESS-CEEEEETTT--
T ss_pred eeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEE-cCCCCEEEEeCC-hhheEcCCC--
Confidence 122234445789999998778999999988765432211 112222333 346889999987 599999886
Q ss_pred ceEEEeeccC-------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecC---cccccCCCeE
Q 003331 634 FHTLWLHELE-------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGP---CTSFALPSQV 701 (829)
Q Consensus 634 g~~~w~~~~~-------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~---~~~~~~~~~i 701 (829)
++........ .... .......++.+|+|+.+++|+.++ .++......... ....+.. ++..+.++.|
T Consensus 292 ~~~~~~~~~~~~~~~l~~~~i-~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 292 DSFASYSSNPVENGSLSQRSV-RSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp TEEEEECCCTTSTTSCSSSCE-EEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred CeEEEEecCCCCCCCCCCCcE-EEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 5543322111 1111 222334578999999999999999 555543322111 0111111 2335668899
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecC--------CccccccccccccccccccccCCCcE-EEEEccCCcEEEEEeecCc
Q 003331 702 LICSRNGSIYSFEQESGNLLWEYSVG--------DPITASAYIDEHLQLKLESCLSIDRL-VCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~G~l~~~d~~~~~ 772 (829)
|+|+.+++|+++|..++++....... .....+.+.+ .++. +|+|+.+++|+++|.+++.
T Consensus 371 WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d------------~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD------------EKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE------------TTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc------------CCCCEEEEEeCcCceeEEeCCCCc
Confidence 99999988999999988876532111 1111111111 2566 9999998889999987653
Q ss_pred cccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003331 773 TGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
........ ..++...+.+...+ ++.||+|+. ++|++||.++++++
T Consensus 439 ~~~~~~~~---------~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 439 VENFNQRN---------SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp EEEECTTT---------SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred EEEeecCC---------CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEE
Confidence 21110000 01222223333333 689999998 67999999887754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-15 Score=163.47 Aligned_cols=270 Identities=11% Similarity=0.048 Sum_probs=186.5
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+++.+++|+.|+.|+.||..+++.++.+..+........+ ++..+++|+.||.|+.||..+++.+..+..+.......
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 5678999999999999999999999988765544333333 56889999999999999999999998887665544445
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEE---EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEee
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTL---WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~---w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
.+. ++.+++++.+|.+..||..+ +... ............ +..+++.+++++.+|.|.+|| .+++.+..+.
T Consensus 220 ~~~--~~~l~s~s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 293 (435)
T 1p22_A 220 RFN--NGMMVTCSKDRSIAVWDMAS--PTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN 293 (435)
T ss_dssp ECC--TTEEEEEETTSCEEEEECSS--SSCCEEEEEECCCSSCEEE--EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEc--CCEEEEeeCCCcEEEEeCCC--CCCceeeeEecCCCCcEEE--EEeCCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence 554 47999999999999999887 4432 222222222222 333788999999999999999 8998887776
Q ss_pred cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 683 TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 683 ~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
... .+... .. .+..+++++.||.|..||..+|+.+..+..+......... ++..+++|+.||
T Consensus 294 ~~~~~v~~~---~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-------------~~~~l~sg~~dg 356 (435)
T 1p22_A 294 GHKRGIACL---QY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-------------DNKRIVSGAYDG 356 (435)
T ss_dssp CCSSCEEEE---EE-ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-------------CSSEEEEEETTS
T ss_pred CCCCcEEEE---Ee-CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-------------cCCEEEEEeCCC
Confidence 433 22222 12 3568999999999999999999998877644332222111 278899999999
Q ss_pred cEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEeccccc
Q 003331 762 SIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 762 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.|.+||..++...... .. .............+.+....+..|+.++.||.|..||..++.
T Consensus 357 ~i~vwd~~~~~~~~~~---~~-~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 357 KIKVWDLVAALDPRAP---AG-TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp CEEEEEHHHHTSTTSC---TT-TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred cEEEEECCCCCCcccc---cc-chheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999998765311100 00 001222222223333444467789999999999999987765
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-15 Score=163.51 Aligned_cols=260 Identities=12% Similarity=0.043 Sum_probs=188.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..+++|+.+|.|..||..+++..+.+..+.....+..+ ++..+++|+.||.|..||..+|+.+..+..+.......
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l 219 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE
Confidence 5778999999999999999999999888766554434444 67899999999999999999999998887655444444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEE---EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.+. ++.+++|+.|+.|+.||..+++.. .....+........+ +++.+++++.+|.+..||..+ ++.+..+.
T Consensus 220 ~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~ 293 (435)
T 1p22_A 220 RFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST--CEFVRTLN 293 (435)
T ss_dssp ECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT--CCEEEEEE
T ss_pred EEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc--CcEEEEEc
Confidence 443 578999999999999999887654 223333333333344 358999999999999999988 88777766
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
.......+... +++.+++|+.+|.|..|| .+|+.+..+..... +... .. .+..+++++.||.|..||..+++
T Consensus 294 ~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~---~~-~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 294 GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RF-DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---EC-CSSEEEEEETTSCEEEEEHHHHT
T ss_pred CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE---Ee-cCCEEEEEeCCCcEEEEECCCCC
Confidence 54443333333 678999999999999999 88998877764332 2222 12 45678899999999999987765
Q ss_pred ---------EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 720 ---------LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 720 ---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+..+..+......... ++..+++++.||.|.+||..++
T Consensus 368 ~~~~~~~~~~~~~~~~h~~~v~~l~~-------------~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 368 DPRAPAGTLCLRTLVEHSGRVFRLQF-------------DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp STTSCTTTTEEEEECCCSSCCCCEEE-------------CSSCEEECCSSSEEEEEC----
T ss_pred CccccccchheeeccCCCCCeEEEEe-------------CCCEEEEEeCCCEEEEEECCCC
Confidence 55554433322111111 2778999999999999998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-14 Score=154.83 Aligned_cols=275 Identities=12% Similarity=0.063 Sum_probs=190.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC------------------ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG------------------RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~------------------~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+.++..|..|+ ++.+..||..+|+.+..+..+. ....+..+++++..+++|+.|+.|..||
T Consensus 73 spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd 151 (393)
T 1erj_A 73 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 151 (393)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 33566777766 5779999999999877654321 1134677888989999999999999999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCe
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGR 623 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~ 623 (829)
..+++.+..+..+........+.+++..+++++.|+.++.||..+++....+.....+. ...+.+ ++..+++++.+|.
T Consensus 152 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~s~d~~ 230 (393)
T 1erj_A 152 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRA 230 (393)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSTTCCEEEEEETTSC
T ss_pred CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcE-EEEEECCCCCEEEEEcCCCc
Confidence 99999888777665555556677778899999999999999999999888776554433 333443 5678899999999
Q ss_pred EEEEEccCCCceEEEeecc-------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE------------EEeec
Q 003331 624 LTAISVKALPFHTLWLHEL-------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII------------WRCRT 683 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~-------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~------------w~~~~ 683 (829)
+..||..+ ++.+..... ......+..+.+++..++.++.++.|..|| .++... ..+..
T Consensus 231 v~iwd~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T 1erj_A 231 VRVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308 (393)
T ss_dssp EEEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC
T ss_pred EEEEECCC--CcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec
Confidence 99999987 766554421 222345667777888999999999999999 554321 11111
Q ss_pred C-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCC
Q 003331 684 G-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 684 ~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
. ..+.+..+ ...+..++.++.||.|+.||..+|+.+..+..+.. +....+... ....+.++.++.|+.||
T Consensus 309 h~~~v~~~~~--~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~------~~~~p~~~~l~sgs~Dg 380 (393)
T 1erj_A 309 HKDFVLSVAT--TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------SSLGPEYNVFATGSGDC 380 (393)
T ss_dssp CSSCEEEEEE--CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS------CTTCTTCEEEEEEETTS
T ss_pred ccCcEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC------cCcCCCCCEEEEECCCC
Confidence 1 11222111 11245788899999999999999998877764433 222211110 01122467899999999
Q ss_pred cEEEEEee
Q 003331 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.|.+|+..
T Consensus 381 ~i~iW~~~ 388 (393)
T 1erj_A 381 KARIWKYK 388 (393)
T ss_dssp EEEEEEEE
T ss_pred cEEECccc
Confidence 99999876
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-15 Score=177.47 Aligned_cols=321 Identities=8% Similarity=0.066 Sum_probs=188.3
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC---C
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC---G 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~---~ 558 (829)
.|.++.+|+|+.++.|+.+|..++++...... ..... ..++.+..+.+|+|+.+++|+++|..+++........ .
T Consensus 180 ~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i-~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 258 (795)
T 4a2l_A 180 YRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQI-QAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK 258 (795)
T ss_dssp EEETTEEEEEESSSCEEEEETTTCCEEECC----CCCE-EEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT
T ss_pred ECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCee-EEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc
Confidence 34678999999875699999988876532111 11111 3344445578999998778999998887765322111 0
Q ss_pred ---eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 559 ---EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 559 ---~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
......+..+.++.||+|+.+ +|+.+|..+++........ ...+.+... +.++.+|+||.+++|..++
T Consensus 259 ~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~-D~~g~lWigt~~~Gl~~~~ 336 (795)
T 4a2l_A 259 SISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFM-DSQGGMWLGTYFGGLNYYH 336 (795)
T ss_dssp SCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEE-CTTSCEEEEESSSCEEEEC
T ss_pred ccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEE-eCCcCEEEEECCCCeEEeC
Confidence 111222345567899999976 7999999988766543221 122223333 4478899999988899999
Q ss_pred ccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-Cc--eeecC---cccc
Q 003331 629 VKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GP--IFAGP---CTSF 695 (829)
Q Consensus 629 ~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~--~~~~~---~~~~ 695 (829)
..+ +........ ......+ .....++.+|+|+.+++|+.++ .+++..+..... .+ ..... .+..
T Consensus 337 ~~~--~~~~~~~~~~~~~~l~~~~V~~-i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 337 PIR--NRFKNIRNIPYKNSLSDNVVSC-IVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp GGG--GSSEEECCCTTSSSCSCSSEEE-EEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred CCc--ccceEEcCCCCCCCCCCCeeEE-EEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 875 432221111 1111122 2233578999999999999999 777654432111 00 01111 1234
Q ss_pred cCCCe-EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccc
Q 003331 696 ALPSQ-VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTG 774 (829)
Q Consensus 696 ~~~~~-i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~ 774 (829)
+.++. ||+|+.+++|+++|.+++++.. +...........+ ..+ ....++.+|+|+. ++|+++|.+++...
T Consensus 414 d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~l~~~~v---~~i----~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 484 (795)
T 4a2l_A 414 DEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQLVNENV---YAI----LPDGEGNLWLGTL-SALVRFNPEQRSFT 484 (795)
T ss_dssp ETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSCCSCSCE---EEE----EECSSSCEEEEES-SCEEEEETTTTEEE
T ss_pred cCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCCcCCCee---EEE----EECCCCCEEEEec-CceeEEeCCCCeEE
Confidence 56788 9999998899999999887643 2221110000000 000 0122788999998 56999998754221
Q ss_pred cccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccc
Q 003331 775 KENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
....... ...+....+.+... .++.||+|+. ++|+++|.+++++
T Consensus 485 ~~~~~~~-------~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 485 TIEKEKD-------GTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp ECCBCTT-------CCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE
T ss_pred Ecccccc-------ccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE
Confidence 1100000 00111222222223 3689999998 7799999887654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-14 Score=150.90 Aligned_cols=240 Identities=13% Similarity=0.179 Sum_probs=182.4
Q ss_pred eCCCeEEEEecC-------CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEE
Q 003331 483 KDSDIYLFVGSH-------SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 483 ~d~~~~l~igs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~ 554 (829)
+.+++.+|+++. ++.|+.||..+++..+.+..+... ....++.+++.+|+++. ++.|+.||.++|+.++.+
T Consensus 49 s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 127 (353)
T 3vgz_A 49 SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP-FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRL 127 (353)
T ss_dssp ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC-CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc-ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEE
Confidence 445678888874 457999999999999988776543 36678888888888765 689999999999999988
Q ss_pred ecCCee---------eeeeeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe
Q 003331 555 QTCGEV---------KCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR 623 (829)
Q Consensus 555 ~~~~~~---------~~~~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~ 623 (829)
..+... .....++++++.+|+++ .++.|+.||..+++.++.+...+.....+.++++++.+|++..++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 207 (353)
T 3vgz_A 128 VLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGE 207 (353)
T ss_dssp ESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSE
T ss_pred ecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCe
Confidence 765321 23456677778888876 3678999999999999988744444456677777889999999999
Q ss_pred EEEEEccCCCceEEEeeccC----CcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003331 624 LTAISVKALPFHTLWLHELE----VPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~----~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
++.||..+ ++..+..... ........+.++++.+|+++.+ +.|+++| .+++.++....+.+. .+....
T Consensus 208 i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~s~ 281 (353)
T 3vgz_A 208 LITIDTAD--NKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESL----AVLFNP 281 (353)
T ss_dssp EEEEETTT--TEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC----CEEEET
T ss_pred EEEEECCC--CeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCc----eEEECC
Confidence 99999988 8888877652 2223446777788889888764 8999999 899998887765431 122222
Q ss_pred C-CeEEEEe-eCCeEEEEeCCCCcEEEEEecCCc
Q 003331 698 P-SQVLICS-RNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 698 ~-~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
+ +.+|+++ .++.|..||..+++.+..+..+..
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 315 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTH 315 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEEECCSE
T ss_pred CCCEEEEEECCCCeEEEEECCCCeEEEEEecCCC
Confidence 3 4588877 578999999999999887776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-15 Score=158.93 Aligned_cols=268 Identities=13% Similarity=0.053 Sum_probs=196.4
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.+.+++++.++.|+.||..+|+....+.. +.....+..+++++..+++|+.||.|+.||..+++.+..+..+.......
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 35577788899999999999998877766 34445577888888999999999999999999999988876655444444
Q ss_pred eeecCCCEEEEeccCCeEEEEEcC-CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFR-NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~-tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.+. +..+++++.++.++.||.. .+..+..+..+........+.+++..+++++.+|.|..||..+ ++........
T Consensus 183 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~~~~~~~ 258 (401)
T 4aez_A 183 SWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNH 258 (401)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--SSEEEEECCC
T ss_pred EEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--CCccEEecCC
Confidence 443 4789999999999999998 4566666665555556666777778999999999999999987 7777776555
Q ss_pred CcceeeeeeeecCCEEEE-Ee--eCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCC
Q 003331 644 VPAFASLCITSANRHVIC-CL--VDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQES 717 (829)
Q Consensus 644 ~~~~~s~~~~~~~~~l~~-~~--~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~t 717 (829)
.....+..+.+++..+++ ++ .++.|..|| .+++.+..+.....+....... .+..+++ |+.+|.|..||..+
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP--HSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS--SSSEEEEEECTTTCEEEEEEEET
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC--CCCeEEEEeecCCCcEEEEecCC
Confidence 544566677766555544 33 689999999 8999888887665554432211 2345666 33799999999998
Q ss_pred CcEEEEEe--cCC-ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 718 GNLLWEYS--VGD-PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 718 G~~~w~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++...... .+. .+.... ...++..+++++.||.|.+||..++
T Consensus 337 ~~~~~~~~~~~h~~~v~~~~------------~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 337 SGLTKQVDIPAHDTRVLYSA------------LSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp TEEEEEEEEECCSSCCCEEE------------ECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ccceeEEEecCCCCCEEEEE------------ECCCCCEEEEEeCCCcEEEEECCCC
Confidence 76654432 222 222111 1223788999999999999998865
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=163.50 Aligned_cols=227 Identities=14% Similarity=0.150 Sum_probs=149.5
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--Cceeece-EEeeCCcEEEEE--EeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSA-AVLADFSQVVVG--CYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~-~~~~~~~~v~vg--~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
++.||++|.||.|+++|..||+++|+++.. ....... .....++.+|++ +.||.||++|..+|..+|.+..+..+
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 678999999999999999999999999875 1111100 000123456665 57999999999999999988776544
Q ss_pred eeeeeee------------cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc-------cccceee-----cCCCEEE
Q 003331 561 KCQPVVD------------APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI-------FGSPAID-----EVHDVLY 616 (829)
Q Consensus 561 ~~~~~~~------------~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~-------~~~~~~~-----~~~~~l~ 616 (829)
..+|+.. ..++.+|+|+.+|.++++|+.||+.+|++..+... ..++... ..++.|+
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 3333331 14689999999999999999999999999876421 1112211 2247899
Q ss_pred EEecCCeEEEEEccCCCceEEEeeccCCccee--------eeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE-EeecCCc
Q 003331 617 VASTSGRLTAISVKALPFHTLWLHELEVPAFA--------SLCITSANRHVICCLVDGHVVALD-SSGSIIW-RCRTGGP 686 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~--------s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w-~~~~~~~ 686 (829)
++..+..+.+.+ ++ |+ +|..+....... ..... .++.+++++.+|.|+++| .+|+.+| +.+...+
T Consensus 170 ig~~~y~v~~~~-~s--G~-~W~~~~s~~~~~~~~~~~~~~~~~s-~Dg~~~~~~~dg~v~A~d~~~G~~~W~~~~l~sP 244 (339)
T 2be1_A 170 IGKTIFELGIHS-YD--GA-SYNVTYSTWQQNVLDVPLALQNTFS-KDGMCIAPFRDKSLLASDLDFRIARWVSPTFPGI 244 (339)
T ss_dssp EEEEEEECEECC-TT--SC-CCCCEEEEEECCTTTHHHHTTCSSC-SSSCCEEEETTTEEEEECSTTCCEEEECCCCSSC
T ss_pred EecceEEEEEEC-CC--CC-eEEEecccccccccccccccccccc-cCCcEEEECCCCEEEEEECCCCcEEEEeecCCCC
Confidence 988777666666 44 86 898754211000 00111 235567889999999999 8999999 6665554
Q ss_pred ee-----------------ecCccc----ccCCCeEEE-EeeCCeEEEEeCCC
Q 003331 687 IF-----------------AGPCTS----FALPSQVLI-CSRNGSIYSFEQES 717 (829)
Q Consensus 687 ~~-----------------~~~~~~----~~~~~~i~~-~t~~g~l~~~d~~t 717 (829)
+. ..|... ...++.+|+ .+.+|.+|++...+
T Consensus 245 v~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~~~Als~~~ 297 (339)
T 2be1_A 245 IVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLSWFALSSQN 297 (339)
T ss_dssp EEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCCEEEEETTT
T ss_pred eEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCcEEEecCCC
Confidence 32 222110 113567777 46788888888643
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-14 Score=181.51 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=127.8
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.++..+.+|+.+|.|..||..+++.+..+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+....
T Consensus 623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v 702 (1249)
T 3sfz_A 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV 702 (1249)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE
Confidence 44567789999999999999999999988887776666778889999999999999999999999999998887766555
Q ss_pred eeeeeec--CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 562 CQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+.+ +...+++|+.|+.++.||..+++.+..+..+........+.+++..+++++.+|.+..||..+ ++..
T Consensus 703 ~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~--~~~~ 778 (1249)
T 3sfz_A 703 NCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRS--ANER 778 (1249)
T ss_dssp EEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG--TEEE
T ss_pred EEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC--Cccc
Confidence 5555554 345678899999999999999999888876666666677777788999999999999999876 5443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=154.59 Aligned_cols=190 Identities=14% Similarity=0.163 Sum_probs=135.4
Q ss_pred CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-ccc
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIF 603 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~~~ 603 (829)
.++.+++++.++.|++||.+||+++|++..+. ..... .+.++ +.+++ +.++.+++||+ +|+.+|++..+. ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~-~~~pd-G~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV-AATKA-GEILF-SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE-EECTT-SCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe-EECCC-CCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 34678888889999999998999999998764 23332 33433 45566 56788999998 899999998752 222
Q ss_pred ccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcc------eeeeeeeecCCEEEEEeeCCeEEEEcCCCC
Q 003331 604 GSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPA------FASLCITSANRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 604 ~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~------~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~ 676 (829)
.+.....+++.+++.+. ++.++.++++ |+.+|+....... .....+..+++.+++.+.++.|+++|.+|+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCC
Confidence 33344454566666665 6788888864 8999988653221 112234556777777777899999994499
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEE-eeCCeEEEEeCCCCcEEEEEec
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQVLIC-SRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~-t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
++|++......++.+ ...++.+++. +.++.|+++|++||+++|++..
T Consensus 157 ~~w~~~~~~~~~~~~---~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 157 LLNSVKLSGTPFSSA---FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEEEECSSCCCEEE---ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred EEEEEECCCCcccee---EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 999998765555544 2335555554 5566899999999999999874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-15 Score=175.10 Aligned_cols=315 Identities=10% Similarity=0.045 Sum_probs=186.4
Q ss_pred eeCC--CeEEEEecCCCcEEEEECCCCcEEEEEEc------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003331 482 LKDS--DIYLFVGSHSHKFICADAKRSSVLWEIKL------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 482 ~~d~--~~~l~igs~~g~l~~~d~~tg~~~w~~~~------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
..|. ++.||+++.++.|+.+|..++++.. +.. +.... ..++.+..+.+|+|+.+++|+++|..+++....
T Consensus 121 ~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i-~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~ 198 (781)
T 3v9f_A 121 TSSVQAGKGLWVCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQT-WTATEAEDGKLYIGHVEGGLSILSLNDKSVKHF 198 (781)
T ss_dssp EECSSTTSEEEEEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCE-EEEEEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EecCccCCCEEEEECCCCeeEEECCCCeEEe-eccCcccCCCccce-EEEEECCCCCEEEEecCCCeEEEcCCCCceEee
Confidence 4566 7999999955569999998887643 221 11111 233444467999999887899999888876532
Q ss_pred EecCC------eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-------CcccccceeecCCCEEEEEec
Q 003331 554 FQTCG------EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 554 ~~~~~------~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~ 620 (829)
..... ......++.+.++.||+|+.+ +|+.+|..+++........ ...+.++. .+.++.+|++|.
T Consensus 199 ~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWigt~ 276 (781)
T 3v9f_A 199 VHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK-QLKDNKLWIATE 276 (781)
T ss_dssp CC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEE-ECTTSEEEEEES
T ss_pred ecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEE-ECCCCCEEEEeC
Confidence 11000 011223445567889999976 8999999888754322111 11222233 334789999998
Q ss_pred CCeEEEEEccCCCceEEEeec--------------cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-
Q 003331 621 SGRLTAISVKALPFHTLWLHE--------------LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG- 684 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~--------------~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~- 684 (829)
.++|+.++..+ +....... +...... .......+.+|+|+.+++|+.++ .++...+.....
T Consensus 277 ~~Gl~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~l~~~~v~-~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~ 353 (781)
T 3v9f_A 277 LNGIMILDLQQ--NQFLLPEQIRFEFIREGDNNYSLSNASAR-YIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPT 353 (781)
T ss_dssp SSCEEEEETTC--C---------CEEECBCSSTTSBSSSCEE-EEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred CCCeEEECCCC--CeeeeeeccccccccCCCCCCCCCCCeEE-EEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCcc
Confidence 66799999886 43322111 0111111 22334578999999999999999 655543321110
Q ss_pred ---CceeecC---cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe---cCCccccccccccccccccccccCCCcEEE
Q 003331 685 ---GPIFAGP---CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS---VGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 685 ---~~~~~~~---~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
....... .+..+.++.||+|+.+++|+++|..++++.+... ........... ..++.+|
T Consensus 354 ~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~------------d~~g~lW 421 (781)
T 3v9f_A 354 QMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLK------------DSEGNLW 421 (781)
T ss_dssp CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEE------------CTTSCEE
T ss_pred ccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEE------------CCCCCEE
Confidence 0111111 1235567899999988889999988776654211 01111111111 2278899
Q ss_pred EEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEE-CCEEEEeeeCCeEEEEeccccccc
Q 003331 756 ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMI-GGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+|+.+++|+++|.+++..... ....+....+.+...+ ++.||+|+. ++|+++|..+++++
T Consensus 422 igt~~~Gl~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 422 FGTYLGNISYYNTRLKKFQII-----------ELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI 482 (781)
T ss_dssp EEETTEEEEEECSSSCEEEEC-----------CSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC
T ss_pred EEeccCCEEEEcCCCCcEEEe-----------ccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE
Confidence 999888899998775421110 0001222233333333 689999998 78999999888764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-14 Score=156.17 Aligned_cols=273 Identities=11% Similarity=0.026 Sum_probs=188.7
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEec-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
++.+++++.|+.|+.||..+|+....+.. +........+.+++..+++|+.+|.++.||..+++.+..+..+.......
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence 35578888999999999999999887765 34444555677778899999999999999999999988887655555555
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
..+ +..++.++.+|.+..||.... +..............+..+.+++..+++++.++.|.+|| .+++.+..+....
T Consensus 183 ~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 259 (401)
T 4aez_A 183 SWN--RHVLSSGSRSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN 259 (401)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS
T ss_pred EEC--CCEEEEEcCCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc
Confidence 554 489999999999999999841 444555544444456667777888999999999999999 8888887765332
Q ss_pred -ceeecCcccccCCCeEEEEe--eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE--EccC
Q 003331 686 -PIFAGPCTSFALPSQVLICS--RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI--CTSS 760 (829)
Q Consensus 686 -~~~~~~~~~~~~~~~i~~~t--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 760 (829)
.+.... ........+..++ .+|.|+.||..+++.+..+.....+....+.. ++..+++ |+.+
T Consensus 260 ~~v~~~~-~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~------------~~~~l~~~~g~~d 326 (401)
T 4aez_A 260 AAVKAVA-WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP------------HSKEIMSTHGFPD 326 (401)
T ss_dssp SCCCEEE-ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS------------SSSEEEEEECTTT
T ss_pred ceEEEEE-ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC------------CCCeEEEEeecCC
Confidence 222211 1111223444443 69999999999999998887665554433222 3677777 5589
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEeccccccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
|.|.+||..++.. ............+..... .+..|+.++.||.|+.||..+++..
T Consensus 327 g~i~v~~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 327 NNLSIWSYSSSGL-----------TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEEEETTEE-----------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred CcEEEEecCCccc-----------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 9999999986421 011111111122222222 3567888999999999999988754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=159.12 Aligned_cols=270 Identities=12% Similarity=0.087 Sum_probs=184.0
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS 605 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~ 605 (829)
.+++.+++|+.|+.|..||..+++.++.+..+........+.+ ++.+++|+.||.+..||..+++.+..+..+......
T Consensus 130 ~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 208 (464)
T 3v7d_B 130 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRC 208 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred ECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEE
Confidence 3456899999999999999999999998876655445555554 348999999999999999999999888765544444
Q ss_pred ceee--cCCCEEEEEecCCeEEEEEccCCCceEEEeec---------------------cCCcceeeeeeeecCCEEEEE
Q 003331 606 PAID--EVHDVLYVASTSGRLTAISVKALPFHTLWLHE---------------------LEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 606 ~~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---------------------~~~~~~~s~~~~~~~~~l~~~ 662 (829)
..+. +++..+++++.+|.+..||..+ +....... ..........+..++..++++
T Consensus 209 l~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 286 (464)
T 3v7d_B 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 286 (464)
T ss_dssp EEEEESSSCEEEEEEETTSCEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred EEEecCCCCCEEEEEcCCCcEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE
Confidence 4443 3456788999999999999886 43221110 000011122345678899999
Q ss_pred eeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccc
Q 003331 663 LVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHL 740 (829)
Q Consensus 663 ~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 740 (829)
+.++.|.+|| .+++.+..+.... .+..... ...+..+++++.||.|+.||..+|+.+..+..+.........
T Consensus 287 ~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~---- 360 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY--DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL---- 360 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE----
T ss_pred eCCCeEEEEECCCCcEEEEecCCCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEE----
Confidence 9999999999 8888887765432 2322221 113457889999999999999999998887654432222111
Q ss_pred ccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEE
Q 003331 741 QLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 741 ~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~ 819 (829)
++..+++++.||.|.+||..++. ................. .+..+..|+ +|.++.|
T Consensus 361 ---------~~~~l~s~s~dg~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iw 417 (464)
T 3v7d_B 361 ---------SDKFLVSAAADGSIRGWDANDYS-------------RKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIY 417 (464)
T ss_dssp ---------CSSEEEEEETTSEEEEEETTTCC-------------EEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEE
T ss_pred ---------cCCEEEEEeCCCcEEEEECCCCc-------------eeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEE
Confidence 26789999999999999987541 11111111111111112 344555555 9999999
Q ss_pred eccccccc
Q 003331 820 ALETQHLE 827 (829)
Q Consensus 820 d~~tg~~~ 827 (829)
|.++|++.
T Consensus 418 d~~~g~~~ 425 (464)
T 3v7d_B 418 NLRSGKLV 425 (464)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99999864
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-15 Score=162.60 Aligned_cols=269 Identities=12% Similarity=0.106 Sum_probs=200.7
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee-
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV- 560 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~- 560 (829)
+..++..+++|+.+|.|..|| .+++....+..+.....+..+.+++..+++++.|+.|+.||..+++.+..+......
T Consensus 116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 344677899999999999999 678888887766665667788888889999999999999999999998887655432
Q ss_pred --------------eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003331 561 --------------KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 561 --------------~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
.....+.+ ++.+++++.++.++.||..+++.+..+..+........+.+++..+++++.+|.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVD-DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp -----------CCCBSCCEEEE-TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cceeeccccCCcceeeEEEEcC-CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 23333443 477899999999999999999888777665555666677777789999999999999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEE
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~ 704 (829)
||..+ ++....+...........+.+++ .+++++.++.+.+|| .+++.+..+.... .+....+. ..+..++++
T Consensus 274 ~d~~~--~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~ 348 (425)
T 1r5m_A 274 WHGGN--GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS--QDGQKYAVA 348 (425)
T ss_dssp ECSSS--BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC--TTSSEEEEE
T ss_pred EECCC--CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEc--CCCCEEEEE
Confidence 99887 76666665444444566666666 899999999999999 8888887776532 33322211 124578888
Q ss_pred eeCCeEEEEeCCCCc--------------------EEEEEecCC---ccccccccccccccccccccCCCcEEEEEccCC
Q 003331 705 SRNGSIYSFEQESGN--------------------LLWEYSVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 705 t~~g~l~~~d~~tG~--------------------~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+.+|.|..||..+++ .+..+..+. .+....+ ..++.++++++.+|
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------s~~~~~l~~~~~dg 416 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSW------------NCAGNKISVAYSLQ 416 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEE------------CTTSSEEEEEESSS
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEc------------cCCCceEEEEecCc
Confidence 999999999999888 555555432 2222211 22377899999999
Q ss_pred cEEEEEee
Q 003331 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.|++||.+
T Consensus 417 ~i~iw~~~ 424 (425)
T 1r5m_A 417 EGSVVAIP 424 (425)
T ss_dssp CCEEEECC
T ss_pred eEEEEeec
Confidence 99999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-14 Score=148.99 Aligned_cols=263 Identities=12% Similarity=0.095 Sum_probs=190.6
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC---cEEEEEecCCeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG---DIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG---~~~w~~~~~~~~~ 561 (829)
++..+++|+.+|.|..||..+++....+..+.....+..+.+++..+++++.|+.+..|+..+. +.+..+..+....
T Consensus 28 ~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i 107 (313)
T 3odt_A 28 DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNV 107 (313)
T ss_dssp ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCE
T ss_pred CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCE
Confidence 4668999999999999999999888777776666667888889999999999999999997654 4555555444333
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
....+ +++.+++++.++.++.|| +++.+..+..+........+.+ +++.+++++.+|.+..||. ++.....
T Consensus 108 ~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~~~~~ 179 (313)
T 3odt_A 108 CSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN----DKVIKTF 179 (313)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET----TEEEEEE
T ss_pred EEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec----CceEEEE
Confidence 33344 357899999999999999 6777777766554444444433 6789999999999999993 3444444
Q ss_pred cc-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCC
Q 003331 641 EL-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 641 ~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.. .........+.+++ .+++++.++.+..|| .+++.+..+.... .+.... ...++.+++++.+|.|+.||..+
T Consensus 180 ~~~~~~~i~~~~~~~~~-~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~---~~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK---LLPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp CSSCSSCEEEEEEEETT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE---ECTTSCEEEEETTSEEEEECTTT
T ss_pred eccCcccEEEEEEcCCC-eEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE---EecCCCEEEEecCCEEEEEECCC
Confidence 43 33334455555554 488999999999999 8899887776433 333222 23355799999999999999999
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++....+..+........... ++.+++++.||.|++||.+++
T Consensus 256 ~~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 256 GSLKQVITLPAISIWSVDCMS------------NGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CCEEEEEECSSSCEEEEEECT------------TSCEEEEETTSCEEEEESCGG
T ss_pred CceeEEEeccCceEEEEEEcc------------CCCEEEEeCCCcEEEEeCCCC
Confidence 999888776553222222221 334778899999999998865
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-15 Score=176.77 Aligned_cols=309 Identities=9% Similarity=0.068 Sum_probs=187.4
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEc-------CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKL-------EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-------~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~ 554 (829)
..|.++.||+|+.+ .|+.+|..++++...... ..... ..+..+..+.+|+|+..++|+.+|..+++.....
T Consensus 217 ~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~ 294 (781)
T 3v9f_A 217 YKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYI-FSIKQLKDNKLWIATELNGIMILDLQQNQFLLPE 294 (781)
T ss_dssp EECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCE-EEEEECTTSEEEEEESSSCEEEEETTCC------
T ss_pred EEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceE-EEEEECCCCCEEEEeCCCCeEEECCCCCeeeeee
Confidence 45678899999987 599999988876532111 11111 3344455679999998678999998887765422
Q ss_pred e-------cC---Ce---eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc---------CCcccccceeecCC
Q 003331 555 Q-------TC---GE---VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC---------GGSIFGSPAIDEVH 612 (829)
Q Consensus 555 ~-------~~---~~---~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~---------~~~~~~~~~~~~~~ 612 (829)
. .. .. .....++.+..+.||+|+.+++|+.++..++...+.... ....+.+.+.+ .+
T Consensus 295 ~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~ 373 (781)
T 3v9f_A 295 QIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD-GQ 373 (781)
T ss_dssp ---CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC-TT
T ss_pred ccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc-CC
Confidence 2 10 01 112234556678999999999999999887765443211 11222233333 36
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec---CC
Q 003331 613 DVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT---GG 685 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~---~~ 685 (829)
+.||+||.+++|+.++..+ +...+... .......+. ....++.+|+|+.+++++.++ .+++....... ..
T Consensus 374 g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~~~~~~v~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGK--RVAIYNKENRELLSNSVLCS-LKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELL 450 (781)
T ss_dssp SCEEEEEBSSCEEEEETTE--EEEECC-----CCCSBEEEE-EECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCC
T ss_pred CCEEEEeCCCcEEEEECCC--CeEEEccCCCCCCCcceEEE-EECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCC
Confidence 8899999877899999875 44332211 111111122 223478999999888999999 66654322111 11
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCC-----ccccccccccccccccccccCCCcEEEEEccC
Q 003331 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGD-----PITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
.+. ++..+.++.+|+|+. ++|+++|..++++........ ....... ...++.+|+|+.+
T Consensus 451 ~v~---~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------------~d~~g~lWigt~~ 514 (781)
T 3v9f_A 451 DVR---VFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIA------------QDSEGRFWIGTFG 514 (781)
T ss_dssp CEE---EEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEE------------ECTTCCEEEEESS
T ss_pred eEE---EEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEE------------EcCCCCEEEEEcC
Confidence 122 233566889999998 679999999888765433221 0111111 2237899999987
Q ss_pred CcEEEEEeecCccccccccccccceeeeee----ccCCcccccceE-ECCEEEEeeeCCeE-EEEeccccccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKL----ELQGDIFSSPVM-IGGRVFVGCRDDYI-YCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~-~~~~l~vg~~~g~l-~~~d~~tg~~~ 827 (829)
++|+++|.+++. +..+ .++...+.+... .++.||++|. ++| ++||.++++++
T Consensus 515 ~Gl~~~~~~~~~--------------~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 515 GGVGIYTPDMQL--------------VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCEEEECTTCCE--------------EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE
T ss_pred CCEEEEeCCCCe--------------EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE
Confidence 779999876442 1122 123333333333 3689999998 456 99999888764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-15 Score=159.37 Aligned_cols=268 Identities=10% Similarity=0.049 Sum_probs=195.1
Q ss_pred eEEEEecCCCcEEEEECCCCc------EEEEEEcCCceeeceEEeeC----C---cEEEEEEeCCEEEEEEcCCCcE---
Q 003331 487 IYLFVGSHSHKFICADAKRSS------VLWEIKLEGRIECSAAVLAD----F---SQVVVGCYKGKIYFLDYLTGDI--- 550 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~------~~w~~~~~~~~~~~~~~~~~----~---~~v~vg~~dg~l~~~d~~tG~~--- 550 (829)
..++.|+.||.|+.||..+++ ....+..+.....+..+.++ + ..+++++.|+.|+.||..+++.
T Consensus 27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 678999999999999999988 56666666555567778877 7 8999999999999999998886
Q ss_pred --EEEEecC-----Ceeeeeeeee----cCCCE-EEEeccCCeEEEEEcCC------CeEEE-----eec-------cCC
Q 003331 551 --YWTFQTC-----GEVKCQPVVD----APRQL-IWCGSHDHNLYALDFRN------YRCVY-----KLP-------CGG 600 (829)
Q Consensus 551 --~w~~~~~-----~~~~~~~~~~----~~~~~-i~~gs~~g~l~~~d~~t------g~~~w-----~~~-------~~~ 600 (829)
...+..+ ........+. +++.. +++++.++.|+.||..+ ++.+. .+. .+.
T Consensus 107 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (397)
T 1sq9_A 107 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 186 (397)
T ss_dssp EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSC
T ss_pred ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCC
Confidence 6666554 2334445566 66788 99999999999999988 55443 332 233
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc---C---CcceeeeeeeecCCEEEEEeeC---CeEEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL---E---VPAFASLCITSANRHVICCLVD---GHVVAL 671 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~---~---~~~~~s~~~~~~~~~l~~~~~~---g~i~~~ 671 (829)
.......+.+++ .+++++.+|.+..||..+ ++.+..+.. . .....+..+.+++..+++++.+ +.|.+|
T Consensus 187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 187 QFATSVDISERG-LIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp CCCCEEEECTTS-EEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred CCceEEEECCCc-eEEEEeCCCcEEEEECCC--CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 344555666666 888899999999999988 888887776 3 4445667777788999999999 999999
Q ss_pred c-CCCCEEEEeec--------------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe------cC---
Q 003331 672 D-SSGSIIWRCRT--------------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS------VG--- 727 (829)
Q Consensus 672 d-~~g~~~w~~~~--------------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~------~~--- 727 (829)
| .+++.+..+.. ...+....+ ...+..++.++.||.|+.||..+++.+..+. ..
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF--NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEE--CCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence 9 88888877654 222322211 1124578888999999999999999988877 22
Q ss_pred -------------CccccccccccccccccccccCCC----------cEEEEEccCCcEEEEEeecC
Q 003331 728 -------------DPITASAYIDEHLQLKLESCLSID----------RLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 728 -------------~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~G~l~~~d~~~~ 771 (829)
..+....+. .++ ..+++++.||.|.+||.++|
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~------------~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFL------------KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEE------------CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEec------------cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 222221111 123 68999999999999998865
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-14 Score=165.16 Aligned_cols=304 Identities=12% Similarity=0.006 Sum_probs=203.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcEEEEE-e---cCCe
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDIYWTF-Q---TCGE 559 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~~w~~-~---~~~~ 559 (829)
.++.++.++.|..||..+++....+..+.. ...+..+.++ +..+++++.|+.|+.||..+++.+..+ . .+..
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 788999999999999999999888776655 5567788888 889999999999999999999999887 3 3333
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC----cccccceeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG----SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
......+. ++..+++++.++.+..||..+++.+..+.... ......... +++.+++++.+|.++.||..+ ++
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~--~~ 330 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH--DE 330 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE--EE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC--Cc
Confidence 33444555 67889999999999999999999988877652 122222333 468999999999999999887 77
Q ss_pred EEEeeccCCcceeeeee--------------------------------eecCCEEEEEeeCCeEEEEc-CC--------
Q 003331 636 TLWLHELEVPAFASLCI--------------------------------TSANRHVICCLVDGHVVALD-SS-------- 674 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~--------------------------------~~~~~~l~~~~~~g~i~~~d-~~-------- 674 (829)
.+..+........+..+ ...++.++.++.++.+..|+ .+
T Consensus 331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 66655433222111111 02255666666677776666 32
Q ss_pred --------------------------CCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEE-EEec
Q 003331 675 --------------------------GSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLW-EYSV 726 (829)
Q Consensus 675 --------------------------g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w-~~~~ 726 (829)
|+.+..+.....+... ... +..+++++. +|.|+.||..+++... .+..
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~ 486 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV---SLS-QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE---EEC-SSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE---EEc-CCEEEEeecCCCeEEEEECCCccccccccCC
Confidence 2222222222222111 111 567888888 9999999998876642 1111
Q ss_pred C-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc-CCcccccceE--
Q 003331 727 G-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL-QGDIFSSPVM-- 802 (829)
Q Consensus 727 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~-- 802 (829)
. ..+.... ...++.++++++.||.|++||..++. ....+.. ....+.+..+
T Consensus 487 ~~~~v~~~~------------~s~~g~~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 487 LRAKPSYIS------------ISPSETYIAAGDVMGKILLYDLQSRE-------------VKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp CSSCEEEEE------------ECTTSSEEEEEETTSCEEEEETTTTE-------------EEECCSCCCSSCEEEEEECC
T ss_pred ccCceEEEE------------ECCCCCEEEEcCCCCeEEEeeCCCCc-------------ceeEeecCCCCceeEEEEcC
Confidence 1 1121111 12347899999999999999998652 2222211 1122222222
Q ss_pred ----------ECCEEEEeeeCCeEEEEecccc
Q 003331 803 ----------IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 803 ----------~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+..|..++.||.|+.||..++
T Consensus 542 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 542 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 3567888999999999999886
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=158.34 Aligned_cols=293 Identities=10% Similarity=0.031 Sum_probs=195.8
Q ss_pred cEEEEECCCC--cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecC
Q 003331 497 KFICADAKRS--SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAP 569 (829)
Q Consensus 497 ~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~ 569 (829)
.|+.+|..++ +.+..+..+..+. +..+++++..+++++.++.|+.||..+|+.+..... +........+.++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~ 180 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPK-SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH 180 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBC-CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG
T ss_pred EEEEECCCCCcceEEEEEcCCCCce-EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC
Confidence 7888888777 5555555555432 566766443444445567899999999998864322 2222333445555
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCccee
Q 003331 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFA 648 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~ 648 (829)
+..+++++.++.++.||.++++.++.+..+........+++++..+|++. .++.|+.||+.+ ++.++....... ..
T Consensus 181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~-~~ 257 (433)
T 3bws_A 181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT--KLEIRKTDKIGL-PR 257 (433)
T ss_dssp TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT--TEEEEECCCCSE-EE
T ss_pred CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC--CcEEEEecCCCC-ce
Confidence 55666778889999999999999988876555556667777778887666 689999999987 888777665433 35
Q ss_pred eeeeeecCCEEEEEee--------CCeEEEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEE-eeCCeEEEEeCCC
Q 003331 649 SLCITSANRHVICCLV--------DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 649 s~~~~~~~~~l~~~~~--------~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~-t~~g~l~~~d~~t 717 (829)
...+.++++.+++++. ++.|+.|| .+++.+........+... ....++ .+|+. +.++.|+.||..+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~---~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHI---VSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEE---EECSSTTEEEEEETTTTEEEEEETTT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceE---EECCCCCEEEEEecCCCEEEEEECCC
Confidence 5667777889999884 77999999 888877665433222221 122233 56665 7789999999999
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc---------------CCcEEEEEeecCccccccccccc
Q 003331 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS---------------SGSIHILRVNLDVTGKENQSKDH 782 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~G~l~~~d~~~~~~~~~~~~~~~ 782 (829)
++.++.+.....+....+. .++..+++++. ||.|++||..++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s------------~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----------- 391 (433)
T 3bws_A 335 KKVQKSIPVFDKPNTIALS------------PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----------- 391 (433)
T ss_dssp TEEEEEEECSSSEEEEEEC------------TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-----------
T ss_pred CcEEEEecCCCCCCeEEEc------------CCCCEEEEEecCCCccccccccccccceEEEEEECCCC-----------
Confidence 9998877655443322222 22667777765 579999998765
Q ss_pred cceeeeeeccCCcccccceE--ECCEEEEeee-CCeEEEEecc
Q 003331 783 MVQEFAKLELQGDIFSSPVM--IGGRVFVGCR-DDYIYCIALE 822 (829)
Q Consensus 783 ~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~-~g~l~~~d~~ 822 (829)
+....+..... .....+ .+..|++++. ++.++.|+.+
T Consensus 392 --~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 392 --TVKEFWEAGNQ-PTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --EEEEEEECSSS-EEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --cEEEEecCCCC-CceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 22333332221 222222 3457787775 9999999875
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.7e-14 Score=160.40 Aligned_cols=302 Identities=10% Similarity=0.053 Sum_probs=211.8
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..+..++.++.+..||. +++....+..+.....+..+++++..+++++.|+.|..||..+ +.+..+..+.....
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVW 348 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEE
T ss_pred cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEE
Confidence 345678889999999999996 4676666655554455677888888999999999999999654 44444444444444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+.+++.++.+..|| .+++.+..+..+........+.+++..+++++.++.|..||.. ++.+.....
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~---~~~~~~~~~ 424 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTG 424 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT---CCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC---CCEEEEecC
Confidence 556677788899999999999999 5677777776655555566777777889999999999999964 666666655
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.........+.+++..++.++.++.+..||.+++.+..+.... .+.... .. .+..+..++.|+.|..|| .+|+.
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~---~spd~~~las~~~d~~i~iw~-~~~~~ 500 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVA---FSPDGQTIASASDDKTVKLWN-RNGQL 500 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEE---ECTTSCEEEEEETTSEEEEEE-TTSCE
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEE---EcCCCCEEEEEeCCCEEEEEc-CCCCE
Confidence 5555566777888899999999999999996677766554332 232221 22 234677788999999999 57888
Q ss_pred EEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCccccc
Q 003331 721 LWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSS 799 (829)
Q Consensus 721 ~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 799 (829)
+..+..+.. +....+ .+++.++++++.||.|++||.. + +....+.-+...+.+
T Consensus 501 ~~~~~~h~~~v~~l~~------------s~dg~~l~s~~~dg~v~lwd~~-~-------------~~~~~~~~h~~~v~~ 554 (577)
T 2ymu_A 501 LQTLTGHSSSVRGVAF------------SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVWG 554 (577)
T ss_dssp EEEEECCSSCEEEEEE------------CTTSSCEEEEETTSEEEEECTT-S-------------CEEEEEECCSSCEEE
T ss_pred EEEEeCCCCCEEEEEE------------cCCCCEEEEEECcCEEEEEeCC-C-------------CEEEEEcCCCCCEEE
Confidence 777664433 222211 2237889999999999999853 2 222222222222222
Q ss_pred ceE--ECCEEEEeeeCCeEEEEe
Q 003331 800 PVM--IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 800 ~~~--~~~~l~vg~~~g~l~~~d 820 (829)
..+ ++..|+.++.|+.|..||
T Consensus 555 ~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 555 VAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEeCCCEEEEeC
Confidence 222 355788899999999987
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-14 Score=148.81 Aligned_cols=283 Identities=13% Similarity=0.042 Sum_probs=190.7
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+...+.+..+++++..+++|+.|+.|..||..+++....+..+........+.+++..+.+|+.|+.+..|+...+.
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 33344444566777788899999999999999999999888777665555566777788899999999999999875431
Q ss_pred ------EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee--cCCEEEEEe
Q 003331 592 ------CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS--ANRHVICCL 663 (829)
Q Consensus 592 ------~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~--~~~~l~~~~ 663 (829)
....+..+........+.+++..++.++.+|.+..||+++ ++.+..+..+........+.+ ++..++.++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 1112222333344555666677899999999999999988 777766654444334444443 457899999
Q ss_pred eCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccc
Q 003331 664 VDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQ 741 (829)
Q Consensus 664 ~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 741 (829)
.++.+..|| .+++.+..+.... .+....+.+ .+..++.++.|+.|..||..+++.+..+...........
T Consensus 218 ~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~------ 289 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS------ 289 (354)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE------
T ss_pred CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE------
Confidence 999999999 8888876665432 232221111 245788899999999999998877655443221110000
Q ss_pred cccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEE
Q 003331 742 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~ 819 (829)
.....++..+++++.||.|++||..++. ....+.-+...+.+..+ .+..|..|+.||.|+.|
T Consensus 290 ---~~~s~~g~~l~~g~~d~~i~vwd~~~~~-------------~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 290 ---VDFSLSGRLLFAGYNDYTINVWDVLKGS-------------RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp ---EEECTTSSEEEEEETTSCEEEEETTTCS-------------EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ---EEEeCCCCEEEEEECCCcEEEEECCCCc-------------eEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEec
Confidence 0112347899999999999999987551 12222212222222222 35678889999999988
Q ss_pred e
Q 003331 820 A 820 (829)
Q Consensus 820 d 820 (829)
+
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-14 Score=146.47 Aligned_cols=280 Identities=11% Similarity=0.057 Sum_probs=195.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE-----EEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV-----LWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~-----~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.+..|+.|+.|+.|..||..+++. ...+..+.....+..+++++..+++++.|+.|+.|+...+...........
T Consensus 50 ~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~ 129 (340)
T 4aow_A 50 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTK 129 (340)
T ss_dssp CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCC
Confidence 356888999999999999876542 333444445556778888999999999999999999988888777665555
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee-ccCCcccccceee--cCCCEEEEEecCCeEEEEEccCCCceE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL-PCGGSIFGSPAID--EVHDVLYVASTSGRLTAISVKALPFHT 636 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~-~~~~~~~~~~~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~ 636 (829)
......+...+..+++++.|+.+..||.......... ...........+. .....++.++.++.+..||..+ ++.
T Consensus 130 ~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--~~~ 207 (340)
T 4aow_A 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKL 207 (340)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--TEE
T ss_pred ceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC--Cce
Confidence 4455555666788999999999999998766543322 2222222222222 2234566778899999999988 777
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
+..+........+..+.+++..++.++.++.+..|| .+++.+..+.....+.... ...++.+++++.++.|+.||.
T Consensus 208 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~d~~i~iwd~ 284 (340)
T 4aow_A 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALC---FSPNRYWLCAATGPSIKIWDL 284 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEE---ECSSSSEEEEEETTEEEEEET
T ss_pred eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeee---cCCCCceeeccCCCEEEEEEC
Confidence 776665555556677788888999999999999999 8888887776655443322 234667888899999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++...+.+.............. .+..-...+++.++++|+.||.|++||..+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 285 EGKIIVDELKQEVISTSSKAEPP--QCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TTTEEEEEECCC-------CCCC--CEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CCCeEEEeccccceeeeccCCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 99888877653221110000000 0001112334789999999999999999876
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-14 Score=145.17 Aligned_cols=283 Identities=13% Similarity=0.076 Sum_probs=188.0
Q ss_pred EEcCCceeeceEEeeCC-cEEEEEEeCCEEEEEEcCC-----CcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEE
Q 003331 512 IKLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLT-----GDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYAL 585 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~-~~v~vg~~dg~l~~~d~~t-----G~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~ 585 (829)
+..+.....+..+.+++ ..+++|+.|+.|+.||..+ +..+..+..+........+.+++..+++++.|+.|+.|
T Consensus 13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~w 92 (319)
T 3frx_A 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92 (319)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 44444444455666543 6899999999999999754 33455566565555556677778899999999999999
Q ss_pred EcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee------cCCEE
Q 003331 586 DFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS------ANRHV 659 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~------~~~~l 659 (829)
|..+|+.+..+..+.....+..+.+++..++.++.|+.+..||.+. ..+..............+.+ ++..+
T Consensus 93 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred ECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence 9999999888776666566666777778899999999999999874 44444433333333333333 34478
Q ss_pred EEEeeCCeEEEEc-CCCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccc
Q 003331 660 ICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYID 737 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 737 (829)
+.++.++.|..|| .+++....+... ..+....+.+ .+..+..++.||.|..||..+++.+..+.....+....+..
T Consensus 170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 247 (319)
T 3frx_A 170 ISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247 (319)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECS
T ss_pred EEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcC
Confidence 8899999999999 777766554432 2232221111 23468888999999999999999988887665544332222
Q ss_pred cccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec--cC------CcccccceE--ECCEE
Q 003331 738 EHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE--LQ------GDIFSSPVM--IGGRV 807 (829)
Q Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~s~~~--~~~~l 807 (829)
++..+++++. +++.+|+.+.+. ...... .. ...+.+... ++..|
T Consensus 248 ------------~~~~la~~~~-~~i~v~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 301 (319)
T 3frx_A 248 ------------NRYWLAAATA-TGIKVFSLDPQY-------------LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301 (319)
T ss_dssp ------------SSSEEEEEET-TEEEEEEETTEE-------------EEEEECCCCTTCCGGGCCCEEEEEECTTSSEE
T ss_pred ------------CCCEEEEEcC-CCcEEEEeCcCe-------------eeeccCccccccccCcCcceeEEEECCCCCEE
Confidence 2566666654 558999876431 111111 00 001111111 45688
Q ss_pred EEeeeCCeEEEEeccccc
Q 003331 808 FVGCRDDYIYCIALETQH 825 (829)
Q Consensus 808 ~vg~~~g~l~~~d~~tg~ 825 (829)
+.|+.||.|+.||..|++
T Consensus 302 ~sg~~Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 302 FAGYTDNVIRVWQVMTAN 319 (319)
T ss_dssp EEEETTSCEEEEEEEEC-
T ss_pred EEeecCceEEEEEEeecC
Confidence 899999999999998763
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=181.29 Aligned_cols=338 Identities=10% Similarity=0.028 Sum_probs=223.2
Q ss_pred cccccccccccccc-----cc--eEEeeC--CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEE
Q 003331 463 QELWKVHMESCVDA-----SP--LVVLKD--SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVV 533 (829)
Q Consensus 463 ~~~W~~~~~~~~~~-----sp--~v~~~d--~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~v 533 (829)
-.+|....++++.. .+ .+.+.. ....+..|+.++.|..||..+++....+..+.....+..+++++..+++
T Consensus 681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEE
Confidence 45688877665421 11 111222 3447888999999999999999998887766666667788889899999
Q ss_pred EEeCCEEEEEEcCCCcEEEEEecCC-------------------------------------------------------
Q 003331 534 GCYKGKIYFLDYLTGDIYWTFQTCG------------------------------------------------------- 558 (829)
Q Consensus 534 g~~dg~l~~~d~~tG~~~w~~~~~~------------------------------------------------------- 558 (829)
++.|+.|..||..+++....+....
T Consensus 761 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~ 840 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH 840 (1249)
T ss_dssp EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence 9999999999998887665443211
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC------
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL------ 632 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~------ 632 (829)
.......+.+++..+++++.++.+..||..+++.+..+..+........+.+++..++.++.+|.+..|+..+.
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~ 920 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSS
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeee
Confidence 11122334556778888999999999999999888776655544455555555566666666666666664310
Q ss_pred -----------------------------------------------------------------------CceEEEeec
Q 003331 633 -----------------------------------------------------------------------PFHTLWLHE 641 (829)
Q Consensus 633 -----------------------------------------------------------------------~g~~~w~~~ 641 (829)
+++......
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~ 1000 (1249)
T 3sfz_A 921 VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000 (1249)
T ss_dssp SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC
T ss_pred cccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc
Confidence 022222222
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
.+.....+..+.+++..++.++.+|.+..|| .+++..........+.... ...++.+++++.+|.|+.||..+|+.
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~---~~~~~~l~~~~~dg~v~vwd~~~~~~ 1077 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFR---LLQDSRLLSWSFDGTVKVWNVITGRI 1077 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEE---ECSSSEEEEEESSSEEEEEETTTTCC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEE---EcCCCcEEEEECCCcEEEEECCCCce
Confidence 1222233455666778888888899999999 7877664433333333222 23467899999999999999999998
Q ss_pred EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003331 721 LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 721 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 800 (829)
...+..+......... ..++..+++++.||.|.+||..++.. ......+...+.+.
T Consensus 1078 ~~~~~~~~~~v~~~~~-----------s~d~~~l~s~s~d~~v~iwd~~~~~~-------------~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1078 ERDFTCHQGTVLSCAI-----------SSDATKFSSTSADKTAKIWSFDLLSP-------------LHELKGHNGCVRCS 1133 (1249)
T ss_dssp CEEEECCSSCCCCEEE-----------CSSSSSCEEECCSSCCCEECSSSSSC-------------SBCCCCCSSCEEEE
T ss_pred eEEEcccCCcEEEEEE-----------CCCCCEEEEEcCCCcEEEEECCCcce-------------eeeeccCCCcEEEE
Confidence 8777654432222222 12377899999999999999876521 11111111222222
Q ss_pred eE--ECCEEEEeeeCCeEEEEeccccccc
Q 003331 801 VM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 801 ~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.+ .+..|..++.||.|+.||..+++..
T Consensus 1134 ~~s~dg~~lat~~~dg~i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLL 1162 (1249)
T ss_dssp EECSSSSEEEEEETTSCCCEEESSSSCCC
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceE
Confidence 22 3558888999999999999988753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-14 Score=150.01 Aligned_cols=237 Identities=11% Similarity=0.028 Sum_probs=159.9
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
.+..++++ +.+++|+.||.|..||..+|+.+.... .+.....+..+.+++..|++|+.|+.|+.||..+++++..
T Consensus 86 ~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~ 164 (344)
T 4gqb_B 86 ADLTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSS 164 (344)
T ss_dssp EEEEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred EEEEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 35566666 578899999999999999998654332 2344445556777888999999999999999999999988
Q ss_pred eccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecC-CEEEEEeeCCeEEEE
Q 003331 596 LPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSAN-RHVICCLVDGHVVAL 671 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~-~~l~~~~~~g~i~~~ 671 (829)
+..+........+..++ ..++.++.||.|..||..+ ++....+.... ....+..+.+.+ ..++.|+.+|.|.+|
T Consensus 165 ~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~w 242 (344)
T 4gqb_B 165 YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC--PKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242 (344)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS--SSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEE
T ss_pred EcCcCCceEEEEecCCCCCceeeeccccccccccccc--cceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEE
Confidence 87665555555565544 4567788999999999987 76655543322 222344555544 466778899999999
Q ss_pred c-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccC
Q 003331 672 D-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 672 d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
| .+++.+..+.... .+.... ...+....|..++.||.|+.||..++++.....+...+....+...
T Consensus 243 d~~~~~~~~~~~~h~~~v~~v~-fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~----------- 310 (344)
T 4gqb_B 243 DTKSTSCVLSSAVHSQCVTGLV-FSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPL----------- 310 (344)
T ss_dssp ESCC--CCEEEECCSSCEEEEE-ECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSS-----------
T ss_pred ECCCCcEEEEEcCCCCCEEEEE-EccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC-----------
Confidence 9 8888887766433 232221 1111123577889999999999999987543223333333222211
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003331 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
...+++.++.||.|.+|+..+.
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEEcCCCeEEEEECCCC
Confidence 1345678889999999988743
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=153.71 Aligned_cols=269 Identities=10% Similarity=0.050 Sum_probs=184.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeC----CcEEEEEEeCCEEEEEEcCCCcEEEEEe
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLAD----FSQVVVGCYKGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~----~~~v~vg~~dg~l~~~d~~tG~~~w~~~ 555 (829)
.+..+++++.++.|..||..+++.+..+.. +.....+..++.+ +..+++|+.|+.|+.||..+++.+..+.
T Consensus 33 ~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 33 GDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV 112 (366)
T ss_dssp TSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred CCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence 355677777788999999998887655442 1233446677777 5689999999999999999999998887
Q ss_pred cCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEee---ccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 556 TCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKL---PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~---~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+........+.+ ++..+++++.||.|+.||..+++.+..+ ..+........+.+++..+++++.+|.|..||..+
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 6555555556666 6788999999999999999999988877 34444555666777778999999999999999886
Q ss_pred CCceEEEeecc----------------------------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE-----
Q 003331 632 LPFHTLWLHEL----------------------------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI----- 677 (829)
Q Consensus 632 ~~g~~~w~~~~----------------------------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~----- 677 (829)
++....... ......+..+. ++.+++++.++.|.+|| .++..
T Consensus 193 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 193 --KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp --HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred --CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccc
Confidence 543322211 11112233333 77899999999999999 66543
Q ss_pred ---------EEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE----EEecC---Ccccccccccccc
Q 003331 678 ---------IWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW----EYSVG---DPITASAYIDEHL 740 (829)
Q Consensus 678 ---------~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w----~~~~~---~~~~~~~~~~~~~ 740 (829)
+..+.... .+....+.....+..+++++.+|.|+.||..+++... .+..+ ..+....+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 343 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSF----- 343 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEE-----
T ss_pred ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEe-----
Confidence 22222211 1111111111114578888999999999999886432 33322 22222211
Q ss_pred ccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 741 QLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 741 ~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..++..+++++.||.|++||..
T Consensus 344 -------s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 344 -------SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -------CTTSSEEEEEETTSEEEEEEC-
T ss_pred -------CCCCCeEEEEeCCCEEEEEEec
Confidence 2237899999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=156.75 Aligned_cols=232 Identities=11% Similarity=-0.020 Sum_probs=174.5
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
...++..+++|+.++.|..||..+++....+..+.....+..+++++..+++++.|+.|+.||..+++.+..+..+....
T Consensus 105 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v 184 (420)
T 3vl1_A 105 AKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184 (420)
T ss_dssp ECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE
T ss_pred EecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE
Confidence 34466789999999999999999998876655555555677888888899999999999999999999888887666555
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC------------------------cccccceeecCCCEEEE
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG------------------------SIFGSPAIDEVHDVLYV 617 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~------------------------~~~~~~~~~~~~~~l~v 617 (829)
....+.+++..+++++.|+.++.||..+++.+..+.... .....+.+.+++..+++
T Consensus 185 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred EEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 666777778899999999999999999999988876421 12233445566678999
Q ss_pred EecCCeEEEEEccCCCceEEEeeccC-CcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCE-EEEeec--CCceeecC
Q 003331 618 ASTSGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANR-HVICCLVDGHVVALD-SSGSI-IWRCRT--GGPIFAGP 691 (829)
Q Consensus 618 ~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~-~w~~~~--~~~~~~~~ 691 (829)
++.+|.+..||+.+ ++........ .....+..+.+++. .+++++.+|.|.+|| .+++. +..+.. ...+...
T Consensus 265 ~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~- 341 (420)
T 3vl1_A 265 GHVSGVITVHNVFS--KEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV- 341 (420)
T ss_dssp EETTSCEEEEETTT--CCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-
T ss_pred EcCCCeEEEEECCC--CceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-
Confidence 99999999999987 7666655432 33345667777777 899999999999999 77643 444332 2223222
Q ss_pred cccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 692 CTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 692 ~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
. ...+..++.++.||.|..|+..++
T Consensus 342 ~--~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 342 Y--FAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp E--EETTEEEEEETTTEEEEEEEECCT
T ss_pred E--eCCCCEEEEecCCccEEEEeccCC
Confidence 1 122446778888999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-14 Score=153.83 Aligned_cols=274 Identities=14% Similarity=0.050 Sum_probs=190.9
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE-------------cCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK-------------LEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~-------------~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
++..+++|+.+|.|..||..+++....+. .+.....+..+.+ ++..+++++.|+.|+.||..+++.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 57789999999999999999887654433 1333344566666 566889999999999999999999
Q ss_pred EEEEecCCeeeeeeeee--cCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEE
Q 003331 551 YWTFQTCGEVKCQPVVD--APRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAI 627 (829)
Q Consensus 551 ~w~~~~~~~~~~~~~~~--~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~ 627 (829)
...+.....+....... .+...+++++.++.++.||..+++.+..+..+........+.+++. .+++++.+|.+..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~ 214 (408)
T 4a11_B 135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLW 214 (408)
T ss_dssp EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEE
Confidence 98887665544333222 1344889999999999999999988887776655555666666556 57889999999999
Q ss_pred EccCCCce-EEEee---------------ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce---
Q 003331 628 SVKALPFH-TLWLH---------------ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI--- 687 (829)
Q Consensus 628 ~~~~~~g~-~~w~~---------------~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~--- 687 (829)
|..+ +. ..... ........+..+.+++..+++++.+|.+.+|| .+++...........
T Consensus 215 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 292 (408)
T 4a11_B 215 DVRR--ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292 (408)
T ss_dssp ETTC--SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS
T ss_pred ECCC--CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc
Confidence 9876 32 22221 11122234566777788999999999999999 777654332211100
Q ss_pred eecC-cccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEE
Q 003331 688 FAGP-CTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHIL 766 (829)
Q Consensus 688 ~~~~-~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~ 766 (829)
.... .........+.+++.++.|+.||..+++.+..+..+.......... .++..+++++.||.|.+|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ-----------SNFQELYSGSRDCNILAW 361 (408)
T ss_dssp SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE-----------TTTTEEEEEETTSCEEEE
T ss_pred ccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc-----------CCCCEEEEECCCCeEEEE
Confidence 0000 0112234567788889999999999999988876443322222221 237889999999999999
Q ss_pred EeecC
Q 003331 767 RVNLD 771 (829)
Q Consensus 767 d~~~~ 771 (829)
|..++
T Consensus 362 ~~~~~ 366 (408)
T 4a11_B 362 VPSLY 366 (408)
T ss_dssp EECC-
T ss_pred eCCCC
Confidence 99865
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-14 Score=153.42 Aligned_cols=301 Identities=14% Similarity=0.057 Sum_probs=192.4
Q ss_pred ECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCe
Q 003331 502 DAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 502 d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
++.+......+..+...+.+..+++++..+++|+.|+.|..||..+++....+..+........+.+++..+.+|+.|+.
T Consensus 52 ~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 52 NPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred ccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 33344444445555555557778888889999999999999999999998888776655555667778889999999999
Q ss_pred EEEEEcCCCeE-------EEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeecc-----CCccee
Q 003331 582 LYALDFRNYRC-------VYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHEL-----EVPAFA 648 (829)
Q Consensus 582 l~~~d~~tg~~-------~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~-----~~~~~~ 648 (829)
+..||..++.. ...+..+........+.+ .+..++.++.|+.+..||+.+ |+.+..+.. ......
T Consensus 132 v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 132 CSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp CEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEE
T ss_pred EEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeE
Confidence 99999865321 111111222223333333 245689999999999999988 776655422 112223
Q ss_pred eeeeee-cCCEEEEEeeCCeEEEEc-C-CCCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEE
Q 003331 649 SLCITS-ANRHVICCLVDGHVVALD-S-SGSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 649 s~~~~~-~~~~l~~~~~~g~i~~~d-~-~g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~ 724 (829)
+..+.. ++..++.|+.|+.|..|| . .++.+..+... ..+.+..+.+ .+..++.++.||.|..||..+|+.+..+
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT--TSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec--CCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 333333 567888999999999999 5 44554444322 2222221111 2357888899999999999999887665
Q ss_pred ecCCcccc--ccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee----ccCCcccc
Q 003331 725 SVGDPITA--SAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL----ELQGDIFS 798 (829)
Q Consensus 725 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 798 (829)
........ .+.+ ......+++.++++|+.+|.|++||...+. ..... ......+.
T Consensus 288 ~~~~~~~~~~~~~v------~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~-------------~~~~~~~~~~~h~~~v~ 348 (380)
T 3iz6_a 288 NREPDRNDNELPIV------TSVAFSISGRLLFAGYSNGDCYVWDTLLAE-------------MVLNLGTLQNSHEGRIS 348 (380)
T ss_dssp CCCCSSSCCSSCSC------SEEEECSSSSEEEEECTTSCEEEEETTTCC-------------EEEEECCSCSSCCCCCC
T ss_pred cccccccccccCce------EEEEECCCCCEEEEEECCCCEEEEECCCCc-------------eEEEEecccCCCCCceE
Confidence 53321100 0000 001123458899999999999999986542 11111 11112222
Q ss_pred cceE--ECCEEEEeeeCCeEEEEeccccc
Q 003331 799 SPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 799 s~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+..+ .+..|+.|+.||.|..|+...++
T Consensus 349 ~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 349 CLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 2222 45688889999999999987654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-15 Score=162.35 Aligned_cols=271 Identities=10% Similarity=0.030 Sum_probs=186.7
Q ss_pred eEEEEe----------cCCCcEEEEECCCCc---EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC----Cc
Q 003331 487 IYLFVG----------SHSHKFICADAKRSS---VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT----GD 549 (829)
Q Consensus 487 ~~l~ig----------s~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t----G~ 549 (829)
..+++| +.++.|..||..+++ .+..+.. .....+..+++++..+++++.|+.|+.||..+ .+
T Consensus 26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~ 104 (416)
T 2pm9_A 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQV-DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN 104 (416)
T ss_dssp CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCC-SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC
T ss_pred CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEec-CCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc
Confidence 367777 788899999998875 3333332 23345677888888999999999999999887 34
Q ss_pred EEEEEecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCe------EEEee---ccCCcccccceeecC-CCEEEEE
Q 003331 550 IYWTFQTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYR------CVYKL---PCGGSIFGSPAIDEV-HDVLYVA 618 (829)
Q Consensus 550 ~~w~~~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~------~~w~~---~~~~~~~~~~~~~~~-~~~l~v~ 618 (829)
.+..+..+........+.++ +..+++++.|+.|+.||..+++ ..... ..+........+.++ +..++++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 66555544444444556655 7789999999999999999886 33332 122334445556665 5678888
Q ss_pred ecCCeEEEEEccCCCceEEEeeccC------CcceeeeeeeecC-CEEEEEeeCC---eEEEEc-CCC-CEEEEee-c-C
Q 003331 619 STSGRLTAISVKALPFHTLWLHELE------VPAFASLCITSAN-RHVICCLVDG---HVVALD-SSG-SIIWRCR-T-G 684 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~~------~~~~~s~~~~~~~-~~l~~~~~~g---~i~~~d-~~g-~~~w~~~-~-~ 684 (829)
+.+|.|..||+.+ ++.+...... .....+..+.+++ ..+++++.++ .|..|| .++ ..+..+. . .
T Consensus 185 ~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~ 262 (416)
T 2pm9_A 185 GSSNFASIWDLKA--KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ 262 (416)
T ss_dssp SSSSCEEEEETTT--TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS
T ss_pred cCCCCEEEEECCC--CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc
Confidence 9999999999988 7777776654 3334556666665 5788888887 999999 665 4444443 2 2
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCC-cEEEEEccCCcE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID-RLVCICTSSGSI 763 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~G~l 763 (829)
..+....+ ....+..++.++.||.|+.||..+++.+..+..+.......... +++ ..+++++.||.|
T Consensus 263 ~~v~~~~~-s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s-----------~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 263 KGILSLDW-CHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA-----------PEAPDLFACASFDNKI 330 (416)
T ss_dssp SCEEEEEE-CSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC-----------TTCTTEEEECCSSSEE
T ss_pred CceeEEEe-CCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC-----------CCCCCEEEEEecCCcE
Confidence 22322221 11134578888999999999999999887776543322222111 124 689999999999
Q ss_pred EEEEeecCc
Q 003331 764 HILRVNLDV 772 (829)
Q Consensus 764 ~~~d~~~~~ 772 (829)
.+||..+..
T Consensus 331 ~iw~~~~~~ 339 (416)
T 2pm9_A 331 EVQTLQNLT 339 (416)
T ss_dssp EEEESCCCC
T ss_pred EEEEccCCC
Confidence 999998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=146.04 Aligned_cols=280 Identities=10% Similarity=0.073 Sum_probs=184.3
Q ss_pred CCeEEEEecCCCcEEEEECCCC-------cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRS-------SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-------~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~ 557 (829)
++..|+.|+.|+.|..||..++ +..-.+..+.....+..+++++..+++++.|+.|..||..+|+.+..+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 4567899999999999998754 333344445555566778888889999999999999999999998888766
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec---cCCcccccceeecC----------CCEEEEEecCCeE
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP---CGGSIFGSPAIDEV----------HDVLYVASTSGRL 624 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~----------~~~l~v~t~~g~l 624 (829)
........+.+++..+++++.|+.++.||.... ...... .+........+.++ ...++.++.+|.|
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 196 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEE
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEE
Confidence 655556677777889999999999999998743 333222 11112222222222 2578889999999
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CCEEEEeecCCceeecCcccccCCCeEE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
..||.. +.....+........+..+.+++..++.++.++.|.+|| .+ +.....+..+..+.... ...++.++
T Consensus 197 ~iwd~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~---~sp~~~~l 270 (343)
T 2xzm_R 197 KVWNTN---FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA---FNPKLQWV 270 (343)
T ss_dssp EEEETT---TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEE---ECSSSCEE
T ss_pred EEEcCC---CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEE---ECCCCCEE
Confidence 999954 555555555544556777888889999999999999999 44 33333333333333222 23355666
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCccccc--cccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITAS--AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+++.++.+..||..+++.............. ........+...+..+++..+++|+.||.|.+|+..++
T Consensus 271 a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 271 AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 6777888999999887654311111000000 00000000011112345789999999999999998754
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-14 Score=153.96 Aligned_cols=265 Identities=12% Similarity=0.066 Sum_probs=186.8
Q ss_pred CeEEEE-ecCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 486 DIYLFV-GSHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 486 ~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
++.+++ ++.++.|+.||..+|+....... +.....+..+.+++..+++++.|+.|+.||..+++.++.+..+..
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 444544 55677899999999998754322 222334556666766677777889999999999999998876555
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe--------cCCeEEEEEcc
Q 003331 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS--------TSGRLTAISVK 630 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t--------~~g~l~~~~~~ 630 (829)
......+.+++..+++++ .++.|+.||..+++.++.+..+.. .....+++++..+++++ .+|.|+.||+.
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 555667777777786654 789999999999999888776544 34456666677898887 47899999998
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEE-eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEee-
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICC-LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSR- 706 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~-~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~- 706 (829)
+ ++.+....... ......+.++++.+++. +.++.+.+|| .+++.++.......+.... ...+ ..+|+++.
T Consensus 292 ~--~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~---~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 292 K--EKLIDTIGPPG-NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIA---LSPDGKYLYVSCRG 365 (433)
T ss_dssp T--TEEEEEEEEEE-CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEE---ECTTSSEEEEEECC
T ss_pred C--CcEEeeccCCC-CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEE---EcCCCCEEEEEecC
Confidence 7 77766653322 22345666677777665 6789999999 8888887776554443222 2223 46787775
Q ss_pred --------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003331 707 --------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 707 --------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
||.|+.||..+++.+..+.....+....+ .+++..+++++. ++.|++|+.+
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDV------------SPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEE------------CTTSCEEEEEETTTTEEEEEEET
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEE------------cCCCCEEEEEECCCCeEEEEEec
Confidence 46999999999999887765443322211 123677777764 9999999875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-13 Score=158.68 Aligned_cols=316 Identities=11% Similarity=0.063 Sum_probs=216.6
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeC----CEEEEEEcCCCcEEEEEe
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYK----GKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~d~~tG~~~w~~~ 555 (829)
++.++.+|..|+.|+.|..||..+++ ....+..+.....+..+++++..+++++.+ +.|+.|| +|+....+.
T Consensus 67 ~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~ 144 (611)
T 1nr0_A 67 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLT 144 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCC
T ss_pred ECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceec
Confidence 44567899999999999999987654 344555555555678899998888887754 3688887 455544444
Q ss_pred cCCeeeeeeeeecCCC-EEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 556 TCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
.+........+.+++. .+.+++.|+.+..||..+++++..+..+.....+..+.+++..++.++.|+.+..||..+ |
T Consensus 145 gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~--g 222 (611)
T 1nr0_A 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD--G 222 (611)
T ss_dssp CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--C
T ss_pred CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC--C
Confidence 4444445556666554 588999999999999999988877766666666677777788899999999999999887 7
Q ss_pred eEEEeec-------cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee
Q 003331 635 HTLWLHE-------LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 635 ~~~w~~~-------~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~ 706 (829)
+.+..+. .+.....+..+.+++..++.++.|+.|..|| .+++.+..+..+...........-.+..+..++.
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~ 302 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 302 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence 6665542 2333345677778888999999999999999 8888776665432211100000113457888899
Q ss_pred CCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccce
Q 003331 707 NGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQ 785 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~ 785 (829)
+|.+..||..+++..-.+..+.. +....+ .+++..+++++.||.|.+||..++......
T Consensus 303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~------------spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~-------- 362 (611)
T 1nr0_A 303 NGFINFVNPELGSIDQVRYGHNKAITALSS------------SADGKTLFSADAEGHINSWDISTGISNRVF-------- 362 (611)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEE------------CTTSSEEEEEETTSCEEEEETTTCCEEECS--------
T ss_pred CCcEEEEeCCCCCcceEEcCCCCCEEEEEE------------eCCCCEEEEEeCCCcEEEEECCCCceeeec--------
Confidence 99999999998876544433222 222211 223889999999999999998865211100
Q ss_pred eeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccc
Q 003331 786 EFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 786 ~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
.......+.+... .++.++.++.|+.+..|+..++.
T Consensus 363 ----~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 363 ----PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399 (611)
T ss_dssp ----SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSS
T ss_pred ----ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCcc
Confidence 0001111111111 35688889999999999987654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=155.40 Aligned_cols=275 Identities=11% Similarity=0.044 Sum_probs=189.3
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-------EEEEec
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI-------YWTFQT 556 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-------~w~~~~ 556 (829)
.++..|+.|+.|+.|..||..+++....+..+.....+..+++++..+++|+.|+.+..||..++.. ...+..
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC
Confidence 3567899999999999999999999888887766666788899999999999999999999865421 111112
Q ss_pred CCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEeecc-----CCcccccceee-cCCCEEEEEecCCeEEEEEc
Q 003331 557 CGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYKLPC-----GGSIFGSPAID-EVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 557 ~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~-~~~~~l~v~t~~g~l~~~~~ 629 (829)
+........+.+ .+..+++|+.|+.+..||..+|+.+..+.. +.....+..+. .++..++.++.||.+..||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 222222223333 345699999999999999999998876532 11222222332 24578889999999999998
Q ss_pred cCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCcee--e---cCccccc-CCCeEE
Q 003331 630 KALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIF--A---GPCTSFA-LPSQVL 702 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~--~---~~~~~~~-~~~~i~ 702 (829)
.. .+..+..+..+.....+..+.+++..++.++.|+.+..|| .+|+.+..+....... . ...+... .+..++
T Consensus 236 ~~-~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 236 RI-TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp TT-TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred CC-CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 74 1344444444444456677788889999999999999999 8888775554321100 0 0111122 345788
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEec----C-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSV----G-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.|+.+|.|+.||..+++....+.. + ..+.... ..+++..+++|+.||.|.+|+...+
T Consensus 315 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~------------~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLG------------LSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEE------------ECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCEEEEECCCCceEEEEecccCCCCCceEEEE------------ECCCCCEEEEeeCCCCEEEEecCCC
Confidence 889999999999999988766521 1 1122111 1234789999999999999998743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-13 Score=164.18 Aligned_cols=274 Identities=10% Similarity=0.047 Sum_probs=199.5
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|.+|+.+|.|..||..+|+....+..+.....+..+++++..+++++.|+.|+.||..+|+.+..+..+.....
T Consensus 22 sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~ 101 (814)
T 3mkq_A 22 HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR 101 (814)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE
Confidence 34577899999999999999999999988887766667888999999999999999999999999999988876666566
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++..+++++.||.+..||..++ .....+..+........+.+ ++..+++++.+|.|..||..+ +......
T Consensus 102 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~--~~~~~~~ 179 (814)
T 3mkq_A 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPNFTL 179 (814)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC--SSCSEEE
T ss_pred EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcceeEE
Confidence 6677777888999999999999999887 55555554444455556665 456888999999999999887 5555554
Q ss_pred ccCC-cceeeeeeee--cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 641 ELEV-PAFASLCITS--ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 641 ~~~~-~~~~s~~~~~--~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
.... .......+.+ ++..+++++.+|.|..|| .+++.+..+.... .+....+ ...+..+++++.+|.|+.||.
T Consensus 180 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE--CSSSSEEEEEETTSCEEEEET
T ss_pred ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE--cCCCCEEEEEeCCCeEEEEEC
Confidence 4332 2334455555 778999999999999999 8888877765432 2322211 112346888889999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCc-EEEEEccCCcEEEEEeecC
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~~~~ 771 (829)
.+++..+.+..+........... .+. .+++.+.++++.+|+...+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 258 STYKVEKTLNVGLERSWCIATHP-----------TGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp TTCSEEEEECCSSSSEEEEEECT-----------TCGGGEEEEEETTEEEEEECSCC
T ss_pred CCCcEEEEeecCCCcEEEEEEcc-----------CCCceEEEEEeCCCEEEEEcCCC
Confidence 99999888765543222221111 122 2234444566777776543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-13 Score=154.51 Aligned_cols=308 Identities=9% Similarity=0.041 Sum_probs=211.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
..++..|+.++.++.|..||. +++.+..+..+.....+..+.+++..+++++.|+.++.|| .+++.+..+..+.....
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~-~~~~~~~~~~~h~~~v~ 307 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 307 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe-CCCcEEEEEecCCCCeE
Confidence 345667888999999999996 5777666665555555677888888999999999999999 56777666655444444
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+.+++..+++++.|+.+..||..+... ..+..+........+.+++..+++++.+|.+..||.. ++.+.....
T Consensus 308 ~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~---~~~~~~~~~ 383 (577)
T 2ymu_A 308 GVAFSPDGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQTLTG 383 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT---CCEEEEEEC
T ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC---CCEEEEecC
Confidence 456677778899999999999999765544 3444444444456667777899999999999999965 566666655
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 643 EVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
......+..+.+++..++.++.++.|..||.+++.+....... .+....+. ..+..+..++.|+.|..||. +++.+
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~~d~~v~~w~~-~~~~~ 460 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS--PDDQTIASASDDKTVKLWNR-NGQLL 460 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET-TSCEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEEC--CCCCEEEEEcCCCEEEEEEC-CCCEE
Confidence 5555566777788889999999999999997777776654332 23222111 12456778889999999995 56766
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV 801 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 801 (829)
..+...........+ .+++.++++++.|+.|.+||.. + +....+......+.+..
T Consensus 461 ~~~~~~~~~v~~~~~-----------spd~~~las~~~d~~i~iw~~~-~-------------~~~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 461 QTLTGHSSSVRGVAF-----------SPDGQTIASASDDKTVKLWNRN-G-------------QLLQTLTGHSSSVRGVA 515 (577)
T ss_dssp EEEECCSSCEEEEEE-----------CTTSCEEEEEETTSEEEEEETT-S-------------CEEEEEECCSSCEEEEE
T ss_pred EEEcCCCCCEEEEEE-----------cCCCCEEEEEeCCCEEEEEcCC-C-------------CEEEEEeCCCCCEEEEE
Confidence 555433322211111 2237889999999999999954 2 22222222222222222
Q ss_pred E--ECCEEEEeeeCCeEEEEeccccc
Q 003331 802 M--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 802 ~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+ ++..|..++.||.|+.||. +++
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~-~~~ 540 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNR-NGQ 540 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TSC
T ss_pred EcCCCCEEEEEECcCEEEEEeC-CCC
Confidence 2 3557888999999999996 444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-14 Score=147.33 Aligned_cols=301 Identities=12% Similarity=0.079 Sum_probs=191.3
Q ss_pred CCCcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCcE-----EEEEecCCeeeeeeeeecCCCEEEEec
Q 003331 504 KRSSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGDI-----YWTFQTCGEVKCQPVVDAPRQLIWCGS 577 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~~-----~w~~~~~~~~~~~~~~~~~~~~i~~gs 577 (829)
++.+++-+++.+...+.+..++++ +..|+.|+.|+.|..||..+++. ...+..+........+.+++..+++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 333444455566666667778765 56889999999999999877543 333444444455566777788999999
Q ss_pred cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE-eeccCCcceeeeeeee--
Q 003331 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW-LHELEVPAFASLCITS-- 654 (829)
Q Consensus 578 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w-~~~~~~~~~~s~~~~~-- 654 (829)
.|+.++.|+...+.....................+..++.++.++.+..||... ..... .............+..
T Consensus 106 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 106 WDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS--CEEEEECSSSCSSCEEEEEECSCS
T ss_pred ccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC--CceEEEEeccccCcccceEEccCC
Confidence 999999999999888777665554444455555667889999999999999875 32222 1222222223333332
Q ss_pred cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc
Q 003331 655 ANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 655 ~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
....++.++.++.+..+| .+++.+..+.... .+.+..+. ..+..++.++.||.|..||..+++.+..+.....+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 261 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence 234567778899999999 8888776654322 33222111 1244688889999999999999999888776655433
Q ss_pred ccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe
Q 003331 733 SAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 810 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg 810 (829)
..+.. ++.+++++.++.|.+||.+++..-...... ............+.+..+ .+..|+.|
T Consensus 262 ~~~~~-------------~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 262 LCFSP-------------NRYWLCAATGPSIKIWDLEGKIIVDELKQE----VISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp EEECS-------------SSSEEEEEETTEEEEEETTTTEEEEEECCC-----------CCCCCEEEEEECTTSSEEEEE
T ss_pred eecCC-------------CCceeeccCCCEEEEEECCCCeEEEecccc----ceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 22221 456777778999999998754211100000 000000011111222222 34688899
Q ss_pred eeCCeEEEEeccccc
Q 003331 811 CRDDYIYCIALETQH 825 (829)
Q Consensus 811 ~~~g~l~~~d~~tg~ 825 (829)
+.||.|+.||+++|+
T Consensus 325 s~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 325 YTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTSCEEEEEEEC--
T ss_pred eCCCEEEEEeCCCcC
Confidence 999999999999986
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-13 Score=146.17 Aligned_cols=279 Identities=12% Similarity=0.073 Sum_probs=184.6
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe------------------eeeeeeeecCCCEEEEe
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE------------------VKCQPVVDAPRQLIWCG 576 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~------------------~~~~~~~~~~~~~i~~g 576 (829)
+.....+..+++++..+++|+ ++.+..|+..+|+.+..+..+.. ......+.+++..+++|
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 333445677888988888877 67899999999998876543211 13345567778889999
Q ss_pred ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-c
Q 003331 577 SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-A 655 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~ 655 (829)
+.|+.|+.||..+++.+..+..+.....+..+.+++..++.++.++.+..||+.+ ++.......... .....+.+ +
T Consensus 142 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~~~~-v~~~~~~~~~ 218 (393)
T 1erj_A 142 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQCSLTLSIEDG-VTTVAVSPGD 218 (393)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEEEEEEECSSC-EEEEEECSTT
T ss_pred cCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--CeeEEEEEcCCC-cEEEEEECCC
Confidence 9999999999999998887776665566667777778999999999999999988 777666554333 34455555 6
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEEeecC--------CceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEE---
Q 003331 656 NRHVICCLVDGHVVALD-SSGSIIWRCRTG--------GPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLW--- 722 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--------~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w--- 722 (829)
+..+++++.++.|..|| .+++.+...... ..+.+.. .. .+..++.++.||.|..||..++....
T Consensus 219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~---~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV---FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE---ECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE---ECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 77889999999999999 888877655321 1222221 22 24468888999999999987654321
Q ss_pred ---------EEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC
Q 003331 723 ---------EYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ 793 (829)
Q Consensus 723 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (829)
.+..+....... ....++.++++++.||.|++||..++. ....+..+
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~l~sgs~D~~v~iwd~~~~~-------------~~~~l~~h 351 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSV-----------ATTQNDEYILSGSKDRGVLFWDKKSGN-------------PLLMLQGH 351 (393)
T ss_dssp -----CEEEEEECCSSCEEEE-----------EECGGGCEEEEEETTSEEEEEETTTCC-------------EEEEEECC
T ss_pred CCCCCcceEEEecccCcEEEE-----------EECCCCCEEEEEeCCCeEEEEECCCCe-------------EEEEECCC
Confidence 111111111111 112237789999999999999987652 12222211
Q ss_pred CcccccceE--------ECCEEEEeeeCCeEEEEecccc
Q 003331 794 GDIFSSPVM--------IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 794 ~~~~~s~~~--------~~~~l~vg~~~g~l~~~d~~tg 824 (829)
...+.+..+ .+..+..|+.||.|..|+..+.
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 111111111 2346778889999999998643
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-13 Score=156.14 Aligned_cols=312 Identities=10% Similarity=0.003 Sum_probs=214.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~ 562 (829)
++..|..++ ++.++.||..+++..-.+..+.....+..+++++.++.+|+.|+.|..||..+++ .+..+..+.....
T Consensus 29 dg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~ 107 (611)
T 1nr0_A 29 AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107 (611)
T ss_dssp TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred CCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE
Confidence 456777776 4589999999888877777666666678899999999999999999999987654 3445554444445
Q ss_pred eeeeecCCCEEEEeccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEE
Q 003331 563 QPVVDAPRQLIWCGSHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
...+.+++..+.+++.+ +.++.|| +|+....+..+.....+..+.+++. .++.++.|+.+..||..+ ++.+
T Consensus 108 ~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~--~~~~ 183 (611)
T 1nr0_A 108 DISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFK 183 (611)
T ss_dssp EEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEE
T ss_pred EEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC--CeEe
Confidence 56677777778776654 3677777 4554444444444455556666554 588899999999999877 7776
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec--------CCceeecCcccccCCCeEEEEeeCC
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT--------GGPIFAGPCTSFALPSQVLICSRNG 708 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--------~~~~~~~~~~~~~~~~~i~~~t~~g 708 (829)
..+..+.....+..+.+++..++.++.|+.|..|| .+|+.+..+.. ...+.+..+.+ .+..+..++.|+
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~ 261 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADK 261 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTS
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCC
Confidence 66665555566778888889999999999999999 88887765531 12233222111 234688889999
Q ss_pred eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeee
Q 003331 709 SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFA 788 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~ 788 (829)
.|..||..+++.+.++..+......... ....+..++.++.+|.+.+||...+. ...
T Consensus 262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~s~s~d~~i~~~~~~~~~-------------~~~ 318 (611)
T 1nr0_A 262 TIKIWNVATLKVEKTIPVGTRIEDQQLG----------IIWTKQALVSISANGFINFVNPELGS-------------IDQ 318 (611)
T ss_dssp EEEEEETTTTEEEEEEECCSSGGGCEEE----------EEECSSCEEEEETTCCEEEEETTTTE-------------EEE
T ss_pred eEEEEeCCCCceeeeecCCCCccceeEE----------EEEcCCEEEEEeCCCcEEEEeCCCCC-------------cce
Confidence 9999999999988776644322111000 01136788899999999999976541 111
Q ss_pred eeccCCcccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 789 KLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 789 ~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
...-+...+.+..+ .+..|+.++.||.|..||..+++.
T Consensus 319 ~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 11111122222222 466899999999999999988754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-13 Score=151.20 Aligned_cols=320 Identities=12% Similarity=0.052 Sum_probs=210.5
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEc--CCCcEEEEEecCCeeeeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDY--LTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~--~tG~~~w~~~~~~~~~~~~~ 565 (829)
.+..++.++.|..||..+++++.++..+..+ ....+++++.++|+++.++.|..||. .+++++.++..+... ....
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~-~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p-~~va 228 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVE 228 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTTE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEE
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCccc-ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc-ceEE
Confidence 3444556789999999999999888765553 35678899999999999999999999 899998888765544 4456
Q ss_pred eec----CCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCc-----------ccccceeecCCCEEEEE-ecCCeEEEEE
Q 003331 566 VDA----PRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGS-----------IFGSPAIDEVHDVLYVA-STSGRLTAIS 628 (829)
Q Consensus 566 ~~~----~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~-----------~~~~~~~~~~~~~l~v~-t~~g~l~~~~ 628 (829)
+++ +++.+|+++. ++.+..||..+++++..+...+. ......++.++..+++. ..++.|..||
T Consensus 229 ~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd 308 (543)
T 1nir_A 229 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVN 308 (543)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEE
T ss_pred eCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEE
Confidence 677 7889999875 78999999999999888765321 12334455545665554 4578899999
Q ss_pred ccCCCceEE--EeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeecCCceee--cCcccccCCCeEE
Q 003331 629 VKALPFHTL--WLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRTGGPIFA--GPCTSFALPSQVL 702 (829)
Q Consensus 629 ~~~~~g~~~--w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~~~~~~~--~~~~~~~~~~~i~ 702 (829)
..+ ++.+ ..... ........+.+++.++++++ .++.|.++| .+|+++..+..+..... ...+....++.+|
T Consensus 309 ~~~--~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~ 385 (543)
T 1nir_A 309 YKD--IDNLTVTSIGA-APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW 385 (543)
T ss_dssp CTT--SSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEE
T ss_pred ecC--CCcceeEEecc-CcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEE
Confidence 876 3322 23332 22234556777888888776 478999999 89998877765321111 1011111236788
Q ss_pred EEee--CCeEEEEeCCC-------CcEEEEEecCCccccccccccccccccccccCCCcEEEEEc-------cCCcEEEE
Q 003331 703 ICSR--NGSIYSFEQES-------GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-------SSGSIHIL 766 (829)
Q Consensus 703 ~~t~--~g~l~~~d~~t-------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~G~l~~~ 766 (829)
+.+. ++.|..||.++ ++.+-++..+..-..... ..+++.++|+++ .++.|.+|
T Consensus 386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~-----------~~pdg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK-----------THPKSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE-----------CCTTCCEEEECCTTCSSHHHHTCEEEE
T ss_pred EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE-----------cCCCCCcEEEecCCCCCcccCceEEEE
Confidence 8764 68999999988 677767665432211111 123488999987 26789999
Q ss_pred EeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeee-----CCeEEEEeccccccc
Q 003331 767 RVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 767 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~-----~g~l~~~d~~tg~~~ 827 (829)
|.+++........ . ..+.-....+....++.+ ++..+|++.. ++.|..||.+|+++.
T Consensus 455 d~~~~~~~~~~~~---v-~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 518 (543)
T 1nir_A 455 DLKNLDAKYQVLP---I-AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 518 (543)
T ss_dssp ETTCTTSCCEEEC---H-HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred ECCCCCCCeEEee---c-hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEE
Confidence 9987632210000 0 000000011222223333 4779998854 689999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-14 Score=151.84 Aligned_cols=276 Identities=14% Similarity=0.041 Sum_probs=184.3
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCc------EEEEEecCCeeeeeeeeecC----C---CEEEEeccCCeEEEEE
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGD------IYWTFQTCGEVKCQPVVDAP----R---QLIWCGSHDHNLYALD 586 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~------~~w~~~~~~~~~~~~~~~~~----~---~~i~~gs~~g~l~~~d 586 (829)
.+..+.+ +.+++++.|+.|+.||..+++ .+..+..+........+.++ + ..+++++.++.|+.||
T Consensus 20 ~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~ 97 (397)
T 1sq9_A 20 FSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 97 (397)
T ss_dssp EEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEE
T ss_pred EEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEE
Confidence 3445544 689999999999999999988 56666655544444555555 6 6888999999999999
Q ss_pred cCCCeE-----EEeeccC-----Ccccccceee----cCCCE-EEEEecCCeEEEEEccCCC----ceEEE-----ee--
Q 003331 587 FRNYRC-----VYKLPCG-----GSIFGSPAID----EVHDV-LYVASTSGRLTAISVKALP----FHTLW-----LH-- 640 (829)
Q Consensus 587 ~~tg~~-----~w~~~~~-----~~~~~~~~~~----~~~~~-l~v~t~~g~l~~~~~~~~~----g~~~w-----~~-- 640 (829)
..+++. ...+... ........+. +++.. +++++.+|.|+.||..+.. ++.+. .+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T 1sq9_A 98 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQG 177 (397)
T ss_dssp EEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred ccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeee
Confidence 988875 5555544 2444555666 66788 8999999999999987510 11111 22
Q ss_pred -----ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-------CCceeecCcccccCCCeEEEEeeC
Q 003331 641 -----ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT-------GGPIFAGPCTSFALPSQVLICSRN 707 (829)
Q Consensus 641 -----~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~-------~~~~~~~~~~~~~~~~~i~~~t~~ 707 (829)
........+..+.+++ .+++++.++.|..|| .+++.+..+.. ...+....+.. .+..+++++.+
T Consensus 178 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~--~~~~l~~~~~d 254 (397)
T 1sq9_A 178 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAIAHDS 254 (397)
T ss_dssp EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS--STTEEEEEEEE
T ss_pred eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC--CCCEEEEEecC
Confidence 1122223455666667 888999999999999 88888887775 33443322111 24578888888
Q ss_pred ---CeEEEEeCCCCcEEEEEec-------------C-CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 708 ---GSIYSFEQESGNLLWEYSV-------------G-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 708 ---g~l~~~d~~tG~~~w~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
|.|+.||..+++.+..+.. . ..+.... ...++.++++++.||.|++||..+
T Consensus 255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------~~~~~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS------------FNDSGETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE------------ECSSSSEEEEEETTSEEEEEETTT
T ss_pred CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE------------ECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999998887764 2 2222111 123478999999999999999876
Q ss_pred Cccccccccccccceeeeeec------cC---------------CcccccceEE-C-----------CEEEEeeeCCeEE
Q 003331 771 DVTGKENQSKDHMVQEFAKLE------LQ---------------GDIFSSPVMI-G-----------GRVFVGCRDDYIY 817 (829)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~s~~~~-~-----------~~l~vg~~~g~l~ 817 (829)
+. ....+. .. ...+...... + ..|+.++.||.|.
T Consensus 323 ~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 323 KE-------------RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TE-------------EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred Cc-------------eeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 52 222222 11 2222333332 3 3788899999999
Q ss_pred EEeccccc
Q 003331 818 CIALETQH 825 (829)
Q Consensus 818 ~~d~~tg~ 825 (829)
+||.++|+
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99999875
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=159.86 Aligned_cols=279 Identities=11% Similarity=0.075 Sum_probs=196.8
Q ss_pred CCeEEEEecCCCcEEEEECCCC-----cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKRS-----SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg-----~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~ 559 (829)
....|..|+.|+.|..||..++ .....+..+.....+..+++++..+++|+.|+.|..||..+|+....+..+..
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~ 473 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK 473 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCC
Confidence 3467889999999999998764 33344555665566778888999999999999999999999999888876665
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCC--CEEEEEecCCeEEEEEccCCC
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVH--DVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~--~~l~v~t~~g~l~~~~~~~~~ 633 (829)
...+..+.+++..+++++.|+.|+.||.... ....... +........+.+++ ..++.++.++.|..||+.+
T Consensus 474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-- 550 (694)
T 3dm0_A 474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-- 550 (694)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--
T ss_pred CEEEEEEeCCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--
Confidence 5556667777888999999999999997654 3333321 12223334444432 4788899999999999987
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEE
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~ 712 (829)
++....+..+.....+..+.+++..++.++.++.|.+|| .+++.+........+.... ...++.+++++.+++|..
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~---~sp~~~~l~~~~~~~i~i 627 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC---FSPNRYWLCAATEHGIKI 627 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEE---ECSSSSEEEEEETTEEEE
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEE---EcCCCcEEEEEcCCCEEE
Confidence 776666655555566778888889999999999999999 8998887766554443322 334567777777888999
Q ss_pred EeCCCCcEEEEEecCCcccc------cccc-ccc-cccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 713 FEQESGNLLWEYSVGDPITA------SAYI-DEH-LQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~------~~~~-~~~-~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
||..+++.+..+........ .+.. ... ..........++.++++|+.||.|++||..
T Consensus 628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999988766543221100 0000 000 000011123458899999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-14 Score=150.30 Aligned_cols=274 Identities=9% Similarity=0.018 Sum_probs=176.4
Q ss_pred eeCCCeEEEEecC------CCcEEEEECCCCcEEEE----EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003331 482 LKDSDIYLFVGSH------SHKFICADAKRSSVLWE----IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 482 ~~d~~~~l~igs~------~g~l~~~d~~tg~~~w~----~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
++.++..|..|+. |+.++.|+..++..... ...+.....+..+++++ .+++++.|+.|..||..+++..
T Consensus 50 fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd~~~~~~~ 128 (357)
T 4g56_B 50 YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWEILEKESL 128 (357)
T ss_dssp ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC--------
T ss_pred ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEeecccccee
Confidence 4445677777776 67788998877764332 11122224466777764 6778888999999999988754
Q ss_pred EE----EecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCC-CEEEEEecCCeEEE
Q 003331 552 WT----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH-DVLYVASTSGRLTA 626 (829)
Q Consensus 552 w~----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~ 626 (829)
.. ...+........+.+++..|++|+.|+.|+.||..+++++..+..+........+..++ ..++.++.+|.|..
T Consensus 129 ~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~ 208 (357)
T 4g56_B 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208 (357)
T ss_dssp CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEE
T ss_pred EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEE
Confidence 32 11233334445667778889999999999999999999999887765555555555444 46778888999999
Q ss_pred EEccCCCceEEEeeccC--Ccceeeeeeeec-CCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeE
Q 003331 627 ISVKALPFHTLWLHELE--VPAFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQV 701 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i 701 (829)
||..+ ++........ .....+..+.++ +..+.+|+.++.|..|| .+++.+..+.... .+.... ...+....|
T Consensus 209 wd~~~--~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~-~sp~~~~~l 285 (357)
T 4g56_B 209 WDTRK--PKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLA-YSYHSSPFL 285 (357)
T ss_dssp CCTTS--SSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEE-ECSSSSCCE
T ss_pred EECCC--CceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEE-EcCCCCCEE
Confidence 99887 6554433322 222344555555 45677888999999999 8888776665432 232221 111122357
Q ss_pred EEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 702 LICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
..++.||.|+.||.++++++..+.....+....+.. .++..++.++.||.|++|+..+
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP-----------~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSP-----------LDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECS-----------SSTTEEEEEETTSCEEEEECC-
T ss_pred EEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeC-----------CCCCEEEEEcCCCeEEEEECCC
Confidence 778899999999999999887655444444332221 1267889999999999999864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-14 Score=149.67 Aligned_cols=231 Identities=11% Similarity=0.020 Sum_probs=169.9
Q ss_pred CCCeEEEEecCCCcEEEEECCCCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--CCe
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGE 559 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~ 559 (829)
.++..+++|+.++.|+.||..+++ ....+..+.....+..+.+++..+++++.|+.|+.||..+++....... +..
T Consensus 18 ~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 18 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 97 (372)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCC
Confidence 356788899899999999999987 6666766665556778888889999999999999999999986655432 333
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE---ee-ccCCcccccceeecCCCEEEEEecCCeEEEEEcc-----
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY---KL-PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK----- 630 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w---~~-~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~----- 630 (829)
......+.+++..+++++.++.++.||..+++..+ .. ..+........+.+++..+++++.+|.+..||..
T Consensus 98 ~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~ 177 (372)
T 1k8k_C 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred ceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccc
Confidence 34445666677899999999999999998876322 22 2223344556666667889999999999999954
Q ss_pred -----------CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccC
Q 003331 631 -----------ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFAL 697 (829)
Q Consensus 631 -----------~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~ 697 (829)
...++.+..+........+..+.+++..+++++.++.|..|| .+++.+..+.... ++... ....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~---~~~~ 254 (372)
T 1k8k_C 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV---TFIT 254 (372)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE---EEEE
T ss_pred ccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE---EEec
Confidence 112566666554444456677777888999999999999999 8898887776543 23222 1223
Q ss_pred CCeEEEEeeCCeEEEEeCCC
Q 003331 698 PSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~t 717 (829)
++.+++++.+|.|+.|+..+
T Consensus 255 ~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 255 ESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp TTEEEEEETTSSCEEEEEET
T ss_pred CCCEEEEEeCCeEEEEEccC
Confidence 56666666899999999887
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-13 Score=163.33 Aligned_cols=247 Identities=10% Similarity=0.017 Sum_probs=184.6
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
+..+.....+..+++++..+++++.+|.|..||..+|+.+..+..+........+.+++..|++++.+|.|+.||..+|+
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~ 88 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 34444445577888999999999999999999999999998888766666667788888899999999999999999999
Q ss_pred EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEE
Q 003331 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVV 669 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~ 669 (829)
.+..+..+......+.+.+++..+++++.+|.+..||..+ + ..............+..+.+ ++..+++++.+|.|.
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG--TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC--CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 9988876666666777777778999999999999999986 4 33334433334445666666 566888899999999
Q ss_pred EEc-CCCCEEEEeecCC--ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccc
Q 003331 670 ALD-SSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLES 746 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 746 (829)
+|| .++...+...... .+......+...+..+++++.+|.|..||..+++....+..+.........
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~---------- 236 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF---------- 236 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEE----------
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEE----------
Confidence 999 7777666655432 222211111113457888999999999999999988777644332222211
Q ss_pred ccCCCcEEEEEccCCcEEEEEeecC
Q 003331 747 CLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 747 ~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+++..+++++.+|.|++||..++
T Consensus 237 -~~~~~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 237 -HPTLPIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp -CSSSSEEEEEETTSCEEEEETTTC
T ss_pred -cCCCCEEEEEeCCCeEEEEECCCC
Confidence 223778999999999999998765
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-13 Score=145.94 Aligned_cols=264 Identities=12% Similarity=0.137 Sum_probs=184.1
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEE-EeccCCeEEEEEcCCCeEEEeeccCCccccccee
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIW-CGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAI 608 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~-~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~ 608 (829)
.+++++.|+.|+.||..+|+.++.+..+..+ ....+.+++..++ +++.++.|+.||..+|+.++.+..+. ....+.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCc-ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 3455667899999999999999988776654 4456666677775 55688999999999999999887665 3345567
Q ss_pred ecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEEc-CCCCEEEEeecCC
Q 003331 609 DEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVALD-SSGSIIWRCRTGG 685 (829)
Q Consensus 609 ~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~d-~~g~~~w~~~~~~ 685 (829)
++++..++++. .++.|+.||+.+ ++.+........ .....+.+++..++ .++.++.|++|| .+++.+..+..+.
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS--NTVAGTVKTGKS-PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred CCCCCEEEEEECCCCEEEEEECCC--CeEEEEEeCCCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence 77678887665 469999999998 887776665443 35666777777775 555689999999 8898888777655
Q ss_pred ceeecCcccccC-CCeEEE-EeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc---cC
Q 003331 686 PIFAGPCTSFAL-PSQVLI-CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT---SS 760 (829)
Q Consensus 686 ~~~~~~~~~~~~-~~~i~~-~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 760 (829)
.+.... ... +..+|+ +..++.|+.||..+++..........+....+ ..++..+++++ .+
T Consensus 159 ~~~~~~---~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 159 SPKGIA---VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV------------NPEGTKAYVTNVDKYF 223 (391)
T ss_dssp SEEEEE---ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE------------CTTSSEEEEEEECSSC
T ss_pred CcceEE---ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEE------------CCCCCEEEEEecCcCC
Confidence 442221 222 345654 45678999999999998877765443322211 12377888887 68
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe-eeCCeEEEEeccccccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG-CRDDYIYCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg-~~~g~l~~~d~~tg~~~ 827 (829)
+.|++||..++ +........... ....+ .+..||+. +.++.++.||..++++.
T Consensus 224 ~~v~~~d~~~~-------------~~~~~~~~~~~~-~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 224 NTVSMIDTGTN-------------KITARIPVGPDP-AGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT 279 (391)
T ss_dssp CEEEEEETTTT-------------EEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CcEEEEECCCC-------------eEEEEEecCCCc-cEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence 99999998755 223333332222 22222 24578665 56899999999988753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-13 Score=145.34 Aligned_cols=267 Identities=12% Similarity=0.082 Sum_probs=184.9
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEc--CCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC---ee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKL--EGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---EV 560 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~---~~ 560 (829)
..++.|+.|+.|..||..+++....+.. +.....+..+++ ++..+++++.|+.|..||..+ +....+.... ..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~ 165 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYW 165 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCC
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCC
Confidence 6899999999999999999887766653 444445667777 567899999999999999875 4444443322 33
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCC--ceEE
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALP--FHTL 637 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~--g~~~ 637 (829)
.....+.+++..+++++.++.|+.||. +++.+..+..+........+.+++. .++.++.++.|..||+.+.. +..+
T Consensus 166 v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 244 (383)
T 3ei3_B 166 YCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI 244 (383)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEE
T ss_pred eEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceE
Confidence 444566777889999999999999998 6778887776666566667777666 88999999999999988522 3344
Q ss_pred EeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCce-------eec---C-----cccccCCCe
Q 003331 638 WLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPI-------FAG---P-----CTSFALPSQ 700 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~-------~~~---~-----~~~~~~~~~ 700 (829)
.... ......+..+.+ ++..+++++.++.|.+|| .+++....+...... ... | ++....++.
T Consensus 245 ~~~~-~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 245 AEMP-HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp EEEE-CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred EEec-CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 4343 233345667777 788999999999999999 777654443311100 000 0 011122333
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCC--ccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGD--PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
+ .++.||.|+.||..+++.+..+.... ........ ..++..+++++ ||.|.+||.+
T Consensus 324 ~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~-----------s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 324 L-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKF-----------SPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp T-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEE-----------CTTSSEEEEEE-TTEEEEEECC
T ss_pred c-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEE-----------ecCccEEEEec-CCcEEEEecC
Confidence 3 55689999999999999987776422 22221111 22377788886 8999999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-13 Score=146.70 Aligned_cols=267 Identities=10% Similarity=0.008 Sum_probs=187.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.|.+|. |+.|+.||..||+....+.++ ...+.+..+++++..+++|+.|+.|..||..+++.+..+..+......
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 45666665 788999999999988777654 334567889999999999999999999999999999888766544433
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE----E
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL----W 638 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~----w 638 (829)
... ++..+.+|+.++.++.||..+. ..+..+..+...........++..++.++.+|.+..|+..+ ++.. .
T Consensus 195 ~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~--~~~~~~~~~ 270 (420)
T 4gga_A 195 LSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--GEGGWVPLQ 270 (420)
T ss_dssp EEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--CSSCSCCSE
T ss_pred Eee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc--ccccceeee
Confidence 333 4578899999999999998764 34444444444445555666678899999999999999876 4321 1
Q ss_pred eeccCCcceeeeeeeecCC-EEEEE--eeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe--eCCeEEE
Q 003331 639 LHELEVPAFASLCITSANR-HVICC--LVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS--RNGSIYS 712 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~-~l~~~--~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t--~~g~l~~ 712 (829)
...............+.+. .++++ +.|+.|..|| .+|+....+.....+.+.... ..++.+++++ .||.|+.
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~--~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE--TTTTEEEEEECTTTCCEEE
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec--CCCCeEEEEEecCCCEEEE
Confidence 1222222223444444443 44443 4689999999 899988887766655443321 1245666654 6899999
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
||..+++.+.++..+........+ .+++.+++.++.||.|.+||...
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l~~-----------spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSLTM-----------SPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE-----------CTTSSCEEEEETTTEEEEECCSC
T ss_pred EECCCCcEEEEEcCCCCCEEEEEE-----------cCCCCEEEEEecCCeEEEEECCC
Confidence 999999999887754332222211 22378899999999999998764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=146.97 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=176.6
Q ss_pred CCceeeceEEeeCCcEEEEEEe------CCEEEEEEcCCCcEEEE-----EecCCeeeeeeeeecCCCEEEEeccCCeEE
Q 003331 515 EGRIECSAAVLADFSQVVVGCY------KGKIYFLDYLTGDIYWT-----FQTCGEVKCQPVVDAPRQLIWCGSHDHNLY 583 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~------dg~l~~~d~~tG~~~w~-----~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~ 583 (829)
+...+.++.+++||.+|+.++. |+.++.|+..+|..... ......+ ....+.+ ++.+++++.+|.|+
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V-~~~~~s~-d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV-TDVAWVS-EKGILVASDSGAVE 118 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE-EEEEEET-TTEEEEEETTSCEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE-EEEEEcC-CCCEEEEECCCEEE
Confidence 3444567889999999999886 67899999888765332 1222233 3344554 46677888999999
Q ss_pred EEEcCCCeEEEeec----cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CE
Q 003331 584 ALDFRNYRCVYKLP----CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RH 658 (829)
Q Consensus 584 ~~d~~tg~~~w~~~----~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~ 658 (829)
.||..+++...... .+...+....+.+++..++.++.+|.|..||.++ ++.+..+........+..+..++ ..
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~~ 196 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDTI 196 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEccCCCce
Confidence 99999887654322 2233445566777778999999999999999998 88888776655555556666555 46
Q ss_pred EEEEeeCCeEEEEc-CCCCEEEEeecCC---ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccc
Q 003331 659 VICCLVDGHVVALD-SSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITAS 733 (829)
Q Consensus 659 l~~~~~~g~i~~~d-~~g~~~w~~~~~~---~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~ 733 (829)
++.++.++.|..|| .+++......... .+.+.. .....+..+.+|+.++.|+.||..+++.+..+..... +...
T Consensus 197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~-~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT-WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEE-ECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeeccCCceEEEECCCCceeeeeeeccccccccchh-hhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 77888899999999 8877654433211 122111 1112234677888999999999999998877664433 2222
Q ss_pred cccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE---ECCEEEEe
Q 003331 734 AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM---IGGRVFVG 810 (829)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~~l~vg 810 (829)
.+... .+.+++.++.||.|++||.+++ +.+......+. +.+..+ .+..|..+
T Consensus 276 ~~sp~-----------~~~~lasgs~D~~i~iwd~~~~-------------~~~~~~~H~~~-V~~vafsP~d~~~l~s~ 330 (357)
T 4g56_B 276 AYSYH-----------SSPFLASISEDCTVAVLDADFS-------------EVFRDLSHRDF-VTGVAWSPLDHSKFTTV 330 (357)
T ss_dssp EECSS-----------SSCCEEEEETTSCEEEECTTSC-------------EEEEECCCSSC-EEEEEECSSSTTEEEEE
T ss_pred EEcCC-----------CCCEEEEEeCCCEEEEEECCCC-------------cEeEECCCCCC-EEEEEEeCCCCCEEEEE
Confidence 11111 1357888999999999998765 22322222222 222222 24577788
Q ss_pred eeCCeEEEEeccc
Q 003331 811 CRDDYIYCIALET 823 (829)
Q Consensus 811 ~~~g~l~~~d~~t 823 (829)
+.||.|+.||+.+
T Consensus 331 s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 331 GWDHKVLHHHLPS 343 (357)
T ss_dssp ETTSCEEEEECC-
T ss_pred cCCCeEEEEECCC
Confidence 9999999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=144.17 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=163.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEE----cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIK----LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~----~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.+++|+.||.|..||..+++...... .+...+.+..+++++..|++|+.|+.|..||..+|+.+..+..+....
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 4678899999999999999987654432 344455677888999999999999999999999999998887665544
Q ss_pred eeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEeeccC--CcccccceeecC-CCEEEEEecCCeEEEEEccCCCceEE
Q 003331 562 CQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGSPAIDEV-HDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
....+..++ ..+++++.|+.|+.||..+++....+... +....+..+.++ ...+..++.+|.|..||..+ ++.+
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--~~~~ 250 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--TSCV 250 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----CC
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--CcEE
Confidence 445555444 56788999999999999999887766432 222334444443 34677788999999999987 8877
Q ss_pred EeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeC
Q 003331 638 WLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..+..+.....+..+.+++. .++.++.|+.|.+|| .++++.........+.+..+.+ +....+..++.||.|..|+.
T Consensus 251 ~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp-~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 251 LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSP-LNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECS-SSTTEEEEEETTSCEEEEEC
T ss_pred EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeC-CCCeEEEEEcCCCeEEEEEC
Confidence 77766655556677777664 577889999999999 7776643222223333322111 11223556788999999998
Q ss_pred CCCcE
Q 003331 716 ESGNL 720 (829)
Q Consensus 716 ~tG~~ 720 (829)
.+..+
T Consensus 330 ~~~~~ 334 (344)
T 4gqb_B 330 PTEPL 334 (344)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 76543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-12 Score=138.58 Aligned_cols=279 Identities=10% Similarity=0.074 Sum_probs=172.6
Q ss_pred CCcEEEEEEeCCEEEEEEcCCC-------cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 527 DFSQVVVGCYKGKIYFLDYLTG-------DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 527 ~~~~v~vg~~dg~l~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
++..+++|+.|+.|..||..++ .....+..+........+.+++..+++++.|+.++.||..+++.+..+..+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 6778999999999999998754 334444444444455566667788999999999999999999998887766
Q ss_pred CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec---cCCcceeeeeeeec----------CCEEEEEeeCC
Q 003331 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE---LEVPAFASLCITSA----------NRHVICCLVDG 666 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~---~~~~~~~s~~~~~~----------~~~l~~~~~~g 666 (829)
.....+..+.+++..++.++.++.+..||... ....... ..........+.+. ...++.++.++
T Consensus 118 ~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 118 QSEVYSVAFSPDNRQILSAGAEREIKLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp CSCEEEEEECSSTTEEEEEETTSCEEEEESSS---CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred CCcEEEEEECCCCCEEEEEcCCCEEEEEeccC---CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 66666677777788999999999999999874 2222221 11111223333333 26788899999
Q ss_pred eEEEEcCCCCEEEEeecC-CceeecCccccc-CCCeEEEEeeCCeEEEEeCC-CCcEEEEEecCCccccccccccccccc
Q 003331 667 HVVALDSSGSIIWRCRTG-GPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQE-SGNLLWEYSVGDPITASAYIDEHLQLK 743 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~-~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~ 743 (829)
.|..||.+++....+... ..+.... .. .+..|..++.||.|+.||.. .+.....+.....+....+.
T Consensus 195 ~i~iwd~~~~~~~~~~~h~~~v~~~~---~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~s------- 264 (343)
T 2xzm_R 195 RLKVWNTNFQIRYTFKAHESNVNHLS---ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN------- 264 (343)
T ss_dssp EEEEEETTTEEEEEEECCSSCEEEEE---ECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEEC-------
T ss_pred EEEEEcCCCceeEEEcCccccceEEE---ECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEEC-------
Confidence 999999555555544432 2232221 22 23468888999999999984 44444444333333222211
Q ss_pred cccccCCCcEEEEEccCCcEEEEEeecCccccccccc-cccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEe
Q 003331 744 LESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSK-DHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d 820 (829)
+.+..+. ++.++.|.+||..++......... ..... .....-....+.+... .+..|+.|+.||.|..|+
T Consensus 265 -----p~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 265 -----PKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK-AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp -----SSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG-BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred -----CCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh-hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 1244554 456778999998755321100000 00000 0000001111112222 356899999999999999
Q ss_pred ccccc
Q 003331 821 LETQH 825 (829)
Q Consensus 821 ~~tg~ 825 (829)
.++|+
T Consensus 338 ~~~g~ 342 (343)
T 2xzm_R 338 FETSA 342 (343)
T ss_dssp EEEEE
T ss_pred EEccC
Confidence 98874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-13 Score=142.04 Aligned_cols=240 Identities=9% Similarity=-0.072 Sum_probs=167.9
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC 592 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~ 592 (829)
+.....+..+++++..+++++.|+.|+.||..+++ .+..+..+........+.+++..+++++.|+.++.||..+++.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 33334567788888899999999999999999987 6667765555555566777788999999999999999999986
Q ss_pred EEeecc--CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE---Eee-ccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 593 VYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL---WLH-ELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 593 ~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~---w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
...... .........+.+++..+++++.+|.+..||.++ ++.. -.. ........+..+.+++..+++++.++
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC--CCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 555432 333445566666678999999999999999887 4321 111 11233345666777888999999999
Q ss_pred eEEEEc-C------------------CCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec
Q 003331 667 HVVALD-S------------------SGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 667 ~i~~~d-~------------------~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~ 726 (829)
.+..|| . +++.+..+.... .+....+ ...+..+++++.||.|..||..+++.+..+..
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF--SANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE--CSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 999999 4 355555554222 2222211 11234788899999999999999999887765
Q ss_pred CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 727 GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+........... ++.+++++ .+|.|++|+..+
T Consensus 243 ~~~~v~~~~~~~-----------~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 243 ETLPLLAVTFIT-----------ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SSCCEEEEEEEE-----------TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEec-----------CCCEEEEE-eCCeEEEEEccC
Confidence 442222222211 25555555 899999999987
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-12 Score=139.01 Aligned_cols=246 Identities=11% Similarity=0.147 Sum_probs=173.8
Q ss_pred EEEEEcCCceeeceEEeeCCcEEEEEEe-------CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CC
Q 003331 509 LWEIKLEGRIECSAAVLADFSQVVVGCY-------KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DH 580 (829)
Q Consensus 509 ~w~~~~~~~~~~~~~~~~~~~~v~vg~~-------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g 580 (829)
.+........ ....++++++.+|+++. ++.|+.||..+++.++.+..+... ....+.++++.+|+++. ++
T Consensus 34 ~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 34 MLRKAVGKGA-YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP-FGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEEEEEESSE-EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC-CSEEEETTTTEEEEEETTTT
T ss_pred hhhhhhccCc-cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc-ceEEECCCCCEEEEEecCCC
Confidence 3444444333 25677888889999874 468999999999999988765543 33456667777777644 68
Q ss_pred eEEEEEcCCCeEEEeeccCCcc---------cccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceee
Q 003331 581 NLYALDFRNYRCVYKLPCGGSI---------FGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFAS 649 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~~~~---------~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s 649 (829)
.|+.||.++|+.++.+..+... .....++++++.+|++.. ++.|+.||.++ ++..+...........
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTG 189 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccce
Confidence 9999999999999988764321 234567777788998873 67899999987 8888877633333355
Q ss_pred eeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-eeecC-ccccc-CCCeEEEEeeC-CeEEEEeCCCCcEEEEE
Q 003331 650 LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IFAGP-CTSFA-LPSQVLICSRN-GSIYSFEQESGNLLWEY 724 (829)
Q Consensus 650 ~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~~~~-~~~~~-~~~~i~~~t~~-g~l~~~d~~tG~~~w~~ 724 (829)
..+.++++.+|+++.++.++++| .+++..+....+.. ....+ .+... .++.+|+++.+ +.|+.||..+++.++..
T Consensus 190 ~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 190 LALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp CEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 67778889999999999999999 89998888765321 00000 01122 24568887654 89999999999998887
Q ss_pred ecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 725 SVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
..+.... ..+. .+++.+|++. .++.|.+||..++
T Consensus 270 ~~~~~~~--~~~s-----------~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 270 AAPESLA--VLFN-----------PARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp ECSSCCC--EEEE-----------TTTTEEEEEETTTTEEEEEETTTT
T ss_pred EcCCCce--EEEC-----------CCCCEEEEEECCCCeEEEEECCCC
Confidence 7654321 1111 2366677776 5889999998765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-13 Score=141.07 Aligned_cols=261 Identities=10% Similarity=0.029 Sum_probs=176.7
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCc--eeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCC-----
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGR--IECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCG----- 558 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~----- 558 (829)
..+++++.++.|+.||..+++.++.+..+.. ....+.++++++.+|+.+. ++.|+.||..+|+.++.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4677888899999999999999988876652 1346778888888877654 6799999999999998776533
Q ss_pred eeeeeeeeecCCCEEEEec------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGS------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
.......+.++++.+|+++ .++.|+.||..+++.++.+..+.. ...+.+++++..+|++ ++.++.
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ-ITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS-CCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC-cceeEECCCCCEEEEe--CCeEEE
Confidence 0122345666677888885 468999999999999888776433 3445577767778887 578999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC------------------------eEEEEc-CCCCEEEEe
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG------------------------HVVALD-SSGSIIWRC 681 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g------------------------~i~~~d-~~g~~~w~~ 681 (829)
||+.+ ++........... ....+.+++..+|+....+ .|+.+| .+++.. ..
T Consensus 159 ~d~~~--~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 159 MDPEA--GTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EETTT--TEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EECCC--CcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 99987 8777665543211 1113344444444433221 467888 777765 32
Q ss_pred ecC---CceeecCcccccCC-CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEE
Q 003331 682 RTG---GPIFAGPCTSFALP-SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC 757 (829)
Q Consensus 682 ~~~---~~~~~~~~~~~~~~-~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 757 (829)
... ..+.. +....+ ..+|++ ++.|+.||.++++.+..+..+.......+ ..++..+|++
T Consensus 235 ~~~~~~~~~~~---~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~~~ 297 (337)
T 1pby_B 235 EVRIMDVFYFS---TAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNV------------STDGSTVWLG 297 (337)
T ss_dssp EEEECSSCEEE---EEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEE------------CTTSCEEEEE
T ss_pred ecCCCCCceee---EEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEE------------CCCCCEEEEE
Confidence 211 11111 112223 457766 68999999999999887775543322211 1237789999
Q ss_pred ccCCcEEEEEeecC
Q 003331 758 TSSGSIHILRVNLD 771 (829)
Q Consensus 758 ~~~G~l~~~d~~~~ 771 (829)
+.++.|.+||..++
T Consensus 298 ~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 298 GALGDLAAYDAETL 311 (337)
T ss_dssp SBSSEEEEEETTTC
T ss_pred cCCCcEEEEECcCC
Confidence 89999999998765
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.4e-13 Score=141.74 Aligned_cols=279 Identities=9% Similarity=0.048 Sum_probs=183.0
Q ss_pred eeceEEee----CCcEEEEEEeCCEEEEEEcCCCcEEEEEec-----CCeeeeeeeeecC----CCEEEEeccCCeEEEE
Q 003331 519 ECSAAVLA----DFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-----CGEVKCQPVVDAP----RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 519 ~~~~~~~~----~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~----~~~i~~gs~~g~l~~~ 585 (829)
..+..+.+ ....+++++.++.|..||..+++.+..+.. +........+.++ +..+++|+.||.|+.|
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~ 100 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEE
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEE
Confidence 34555654 345688888899999999998887765542 1122333445444 4578899999999999
Q ss_pred EcCCCeEEEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEee---ccCCcceeeeeeeecCCEEEE
Q 003331 586 DFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVPAFASLCITSANRHVIC 661 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~---~~~~~~~~s~~~~~~~~~l~~ 661 (829)
|..+++.+..+..+........+.+ ++..+++++.+|.|..||..+ ++.+..+ ........+..+.+++..+++
T Consensus 101 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 178 (366)
T 3k26_A 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMS 178 (366)
T ss_dssp CTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT--TEEEEEECSTTSCSSCEEEEEECTTSSEEEE
T ss_pred EchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec--CeEEEEecccccccCceeEEEECCCCCEEEE
Confidence 9999999988876655556666666 678899999999999999987 7777665 333444566677778889999
Q ss_pred EeeCCeEEEEc-CCCCEEEEeec-----------------------------CCceeecCcccccCCCeEEEEeeCCeEE
Q 003331 662 CLVDGHVVALD-SSGSIIWRCRT-----------------------------GGPIFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 662 ~~~~g~i~~~d-~~g~~~w~~~~-----------------------------~~~~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
++.+|.|..|| .+++....+.. ...+.. +... ++.++.++.+|.|.
T Consensus 179 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~-~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 179 CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC---VRWL-GDLILSKSCENAIV 254 (366)
T ss_dssp EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE---EEEE-TTEEEEECSSSEEE
T ss_pred ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE---EEEc-CCEEEEEecCCEEE
Confidence 99999999999 76654322110 011111 1122 56788899999999
Q ss_pred EEeCCCCcE--------------EEEEecCCccccccccccccccccccccCC--CcEEEEEccCCcEEEEEeecCcccc
Q 003331 712 SFEQESGNL--------------LWEYSVGDPITASAYIDEHLQLKLESCLSI--DRLVCICTSSGSIHILRVNLDVTGK 775 (829)
Q Consensus 712 ~~d~~tG~~--------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~G~l~~~d~~~~~~~~ 775 (829)
.||..+++. +..+.......... ....+ +.++++++.+|.|++||..++....
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM-----------RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC-----------CCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEE-----------EEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence 999887754 33332222111111 11223 7889999999999999998652110
Q ss_pred ccccccccceeeeeeccC--CcccccceE--ECCEEEEeeeCCeEEEEeccc
Q 003331 776 ENQSKDHMVQEFAKLELQ--GDIFSSPVM--IGGRVFVGCRDDYIYCIALET 823 (829)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~--~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~t 823 (829)
......... ...+..... .+..|+.++.||.|+.||+.+
T Consensus 324 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 324 ---------AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ---------CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred ---------ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 011112221 122222222 356888899999999999864
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.6e-16 Score=162.37 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=116.8
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcCCC
Q 003331 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKGLC 357 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~ 357 (829)
..+.+++|+.|+++|+++|+++.|+.+++||++|||||+|++|+++| .+++..+|++||+++|+.+|.+.....
T Consensus 6 ~~p~~~~e~~l~~~~~~~l~~~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~~~~~~~~~~ 85 (329)
T 3tej_A 6 RAPKAGSETIIAAAFSSLLGCDVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEEDST 85 (329)
T ss_dssp CCCCTTHHHHHHHHHHHHHTC-CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHHHHHSCTTSS
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHhhcccc
Confidence 45677899999999999999999999999999999999999998765 478899999999999999998654322
Q ss_pred ccccccccccc-cCcccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCC------------------cc
Q 003331 358 NLDVSADANWK-LNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLP------------------WN 418 (829)
Q Consensus 358 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~------------------~~ 418 (829)
... ....... ....+++++++|+..++...|..++++|..+.++|+++.+++.....+ .+
T Consensus 86 ~~~-~~~~~~~l~~g~~~~l~~lhg~~~~~~~~~~l~~~L~~~~~v~~~d~~g~~~~~~~~~~~~~~a~~~~~~i~~~~~ 164 (329)
T 3tej_A 86 RRM-GFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYLDPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQP 164 (329)
T ss_dssp TTT-TSSSEEEEECCSSCEEEEECCTTSCCGGGGGGGGTSCTTCEEEEECCCTTTSHHHHCSSHHHHHHHHHHHHHHHCS
T ss_pred ccc-ccceeeeccCCCCCcEEEEeCCcccchHHHHHHHhcCCCCeEEEeeCCCCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 111 0111111 134557899999999999999999999998899999888775221100 01
Q ss_pred CCCCCC-eeeecccccee
Q 003331 419 LSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 419 ~~~~~~-~~s~~~~~~~~ 435 (829)
..||.| |||+||.++++
T Consensus 165 ~~~~~l~G~S~Gg~ia~~ 182 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQG 182 (329)
T ss_dssp SSCEEEEEETHHHHHHHH
T ss_pred CCCEEEEEEccCHHHHHH
Confidence 228888 99999998877
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-12 Score=139.86 Aligned_cols=266 Identities=15% Similarity=0.104 Sum_probs=179.5
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC--CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+.|.+|. |+.|+.||..||++...+..+ .....+..+.+++..+++|+.||.|..||..+++.+..+..+.......
T Consensus 117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~ 195 (420)
T 4gga_A 117 NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL 195 (420)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE
Confidence 4666665 999999999999988776643 3445566777788899999999999999999999998887665544444
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE----Ee
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW----RC 681 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w----~~ 681 (829)
..+ +..+..++.++.+..+|.... ...+................+++..++.++.++.+.+++ .+++..+ ..
T Consensus 196 s~~--~~~l~sgs~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~ 272 (420)
T 4gga_A 196 SWN--SYILSSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF 272 (420)
T ss_dssp EEE--TTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE
T ss_pred eeC--CCEEEEEeCCCceeEeeeccc-ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeee
Confidence 443 588999999999999997752 233333443444444556666788999999999999999 6665321 11
Q ss_pred e-cCCceeecCcccccCCCeEEEE--eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 682 R-TGGPIFAGPCTSFALPSQVLIC--SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 682 ~-~~~~~~~~~~~~~~~~~~i~~~--t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
. ....+...... ......+.++ +.|+.|..||..+|+....+.....+....+... ++.+++++
T Consensus 273 ~~~~~~V~~~~~~-p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~------------~~~lv~~s 339 (420)
T 4gga_A 273 TQHQGAVKAVAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH------------YKELISGH 339 (420)
T ss_dssp CCCSSCEEEEEEC-TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETT------------TTEEEEEE
T ss_pred cccCCceeeeeeC-CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCC------------CCeEEEEE
Confidence 1 12222222111 1123344443 4689999999999999988877666554433322 56666554
Q ss_pred --cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003331 759 --SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 759 --~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.+|.|++||..++ +....+.-+...+.+..+ ++..|+.|+.|+.|..||..+.
T Consensus 340 g~~d~~I~iwd~~~~-------------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 340 GFAQNQLVIWKYPTM-------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp CTTTCCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred ecCCCEEEEEECCCC-------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7899999998765 223333322222222222 3567888999999999998653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-12 Score=134.83 Aligned_cols=266 Identities=11% Similarity=0.036 Sum_probs=178.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.|.+|. |+.|+.||..||+.+..+..+ .....+..+.+++..+++|+.|+.|..||.++|+.+..+..+......
T Consensus 36 ~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 36 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence 34566654 788999999999988777654 334557788889999999999999999999999999888766544333
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEe---
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWL--- 639 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~--- 639 (829)
.. ..+..+.+++.++.+..++..++. .+.....+...........++..++.++.+|.+..||..+ ++....
T Consensus 115 ~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~ 190 (318)
T 4ggc_A 115 LS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--GEGGWVPLQ 190 (318)
T ss_dssp EE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--BTTBSCCSE
T ss_pred ee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC--Cccccccee
Confidence 22 245788899999999999887654 3333333344444455556678899999999999999887 432211
Q ss_pred -eccCCcceeeeeeeecC-CEEEE--EeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe--eCCeEEE
Q 003331 640 -HELEVPAFASLCITSAN-RHVIC--CLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS--RNGSIYS 712 (829)
Q Consensus 640 -~~~~~~~~~s~~~~~~~-~~l~~--~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t--~~g~l~~ 712 (829)
..............+.+ ..+.+ ++.++.+..+| ..+...........+....+. ..++.+++++ .||.|+.
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~sg~~d~~i~i 268 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHYKELISGHGFAQNQLVI 268 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEE--TTTTEEEEEECTTTCCEEE
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeec--ccccceEEEEEcCCCEEEE
Confidence 11111112233333333 33333 34567899999 777766555544444333221 1244566554 6899999
Q ss_pred EeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 713 FEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 713 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
||..+++.+.++..+......... .+++.+++.++.||.|.+||..
T Consensus 269 wd~~~~~~~~~l~gH~~~V~~l~~-----------spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 269 WKYPTMAKVAELKGHTSRVLSLTM-----------SPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE-----------CTTSSCEEEEETTTEEEEECCS
T ss_pred EECCCCcEEEEEcCCCCCEEEEEE-----------cCCCCEEEEEecCCeEEEEECC
Confidence 999999999887754332222211 1237889999999999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=145.45 Aligned_cols=266 Identities=11% Similarity=0.117 Sum_probs=174.4
Q ss_pred eEEEEecC---CCcEEEEECCCCcEEEEEEc-CCceeeceEEeeC---CcEEEEEEeCCEEEEEEcCCCc-EEEEEecCC
Q 003331 487 IYLFVGSH---SHKFICADAKRSSVLWEIKL-EGRIECSAAVLAD---FSQVVVGCYKGKIYFLDYLTGD-IYWTFQTCG 558 (829)
Q Consensus 487 ~~l~igs~---~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~---~~~v~vg~~dg~l~~~d~~tG~-~~w~~~~~~ 558 (829)
..+.+|+. ++.|..||..+++....... +.....+..+.++ +..+++++.|+.|..||..+++ .+..+..+.
T Consensus 32 ~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 111 (357)
T 3i2n_A 32 KFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHK 111 (357)
T ss_dssp EEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCS
T ss_pred eEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecc
Confidence 45566766 89999999999987544332 2223345667666 5889999999999999999988 666665544
Q ss_pred eeeeee------eeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCc----ccccce----eecCCCEEEEEecCCe
Q 003331 559 EVKCQP------VVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGS----IFGSPA----IDEVHDVLYVASTSGR 623 (829)
Q Consensus 559 ~~~~~~------~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~----~~~~~~----~~~~~~~l~v~t~~g~ 623 (829)
...... .+.+++..+++++.|+.++.||..+++ .+..+..... ...+.. +..++..+++++.+|.
T Consensus 112 ~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~ 191 (357)
T 3i2n_A 112 EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191 (357)
T ss_dssp SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSE
T ss_pred cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCe
Confidence 333332 234567789999999999999999886 5555433211 111222 4456788999999999
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeee---cCCEEEEEeeCCeEEEEc-CCCCEEEEee-----c-CCceeecCcc
Q 003331 624 LTAISVKALPFHTLWLHELEVPAFASLCITS---ANRHVICCLVDGHVVALD-SSGSIIWRCR-----T-GGPIFAGPCT 693 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~---~~~~l~~~~~~g~i~~~d-~~g~~~w~~~-----~-~~~~~~~~~~ 693 (829)
|..||..+ ++..+....... ..+..+.+ +++.+++++.+|.|..|| .+++....+. . ...+....
T Consensus 192 i~i~d~~~--~~~~~~~~~~~~-v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~-- 266 (357)
T 3i2n_A 192 IKLFDLRN--MALRWETNIKNG-VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR-- 266 (357)
T ss_dssp EEEEETTT--TEEEEEEECSSC-EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE--
T ss_pred EEEEECcc--CceeeecCCCCc-eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE--
Confidence 99999998 777665544333 35666766 788999999999999999 6654433322 1 22222221
Q ss_pred cccCCC--eEEEEeeCCeEEEEeCCCCcE-------------------EEEEecCCc-cccccccccccccccccccCCC
Q 003331 694 SFALPS--QVLICSRNGSIYSFEQESGNL-------------------LWEYSVGDP-ITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 694 ~~~~~~--~i~~~t~~g~l~~~d~~tG~~-------------------~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
...++ .++.++.||.|+.||..++.. +..+..... +.... ...++
T Consensus 267 -~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~------------~s~~~ 333 (357)
T 3i2n_A 267 -HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD------------WSPDK 333 (357)
T ss_dssp -EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE------------ECSSS
T ss_pred -ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE------------EcCCC
Confidence 22233 477888999999999876532 223322221 21111 12236
Q ss_pred cEEE-EEccCCcEEEEEeec
Q 003331 752 RLVC-ICTSSGSIHILRVNL 770 (829)
Q Consensus 752 ~~l~-~~~~~G~l~~~d~~~ 770 (829)
..++ .++.||.|++||..+
T Consensus 334 ~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 334 RGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp TTEEEEEETTSEEEEEEECC
T ss_pred CeEEEEecCCCcEEEEECCC
Confidence 6676 689999999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=139.33 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=181.2
Q ss_pred eeceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEec--CCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 519 ECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 519 ~~~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
..+..+.+++ ..+++|+.|+.|..||..+++....+.. +........+.+ ++..+++++.|+.+..||..+.. +.
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~ 154 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSV-IQ 154 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCE-EE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCc-eE
Confidence 3455666776 7899999999999999999988876653 333444455665 45788899999999999988644 33
Q ss_pred eeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEE
Q 003331 595 KLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVA 670 (829)
Q Consensus 595 ~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~ 670 (829)
.+.... .......+.+++..+++++.+|.|..||+. ++.+..+........+..+.+++. .++.++.++.|.+
T Consensus 155 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 231 (383)
T 3ei3_B 155 VFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKL 231 (383)
T ss_dssp EEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT---SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred EEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC---CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEE
Confidence 333221 334556677778899999999999999984 677777766555556777777777 8899999999999
Q ss_pred Ec-CC----CCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc---cc---ccccc
Q 003331 671 LD-SS----GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITA---SA---YIDEH 739 (829)
Q Consensus 671 ~d-~~----g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~---~~---~~~~~ 739 (829)
|| .+ +..+........+.+..+.+ ..+..+++++.||.|..||..+++....+........ .+ .....
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEMPHEKPVNAAYFNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp EEGGGCCSTTCEEEEEECSSCEEEEEECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred EeCCCCCcccceEEEecCCCceEEEEEcC-CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 99 65 56665554444443332111 1245788889999999999999887655442221100 00 00000
Q ss_pred cccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceE--ECCEEEEeeeCCe
Q 003331 740 LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVM--IGGRVFVGCRDDY 815 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~--~~~~l~vg~~~g~ 815 (829)
..+.......++.+ +++.||.|++||..++ +....+... ...+..... .+..|..++ ||.
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-------------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-------------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTC-------------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCC-------------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCc
Confidence 00000001111222 6678999999998765 222222221 122222122 244566665 999
Q ss_pred EEEEeccc
Q 003331 816 IYCIALET 823 (829)
Q Consensus 816 l~~~d~~t 823 (829)
|..||.++
T Consensus 375 i~iw~~~~ 382 (383)
T 3ei3_B 375 ILIWNRED 382 (383)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-13 Score=146.16 Aligned_cols=290 Identities=10% Similarity=0.040 Sum_probs=183.9
Q ss_pred EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEe-------------cCCeeeeeeeeec-CCCEEEEec
Q 003331 513 KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-------------TCGEVKCQPVVDA-PRQLIWCGS 577 (829)
Q Consensus 513 ~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-------------~~~~~~~~~~~~~-~~~~i~~gs 577 (829)
..+.....+..+++ ++..+++|+.||.|..||..+++....+. .+........+.+ +...+++++
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~ 119 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS 119 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence 33444445667777 78899999999999999999887654433 1223334444555 566888999
Q ss_pred cCCeEEEEEcCCCeEEEeeccCCccccccee--ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec
Q 003331 578 HDHNLYALDFRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA 655 (829)
Q Consensus 578 ~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~--~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~ 655 (829)
.++.++.||..+++....+............ ..++..+++++.+|.+..||..+ ++.+..+...........+.++
T Consensus 120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 120 FDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS--GSCSHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--SCCCEEECCCCSCEEEEEECSS
T ss_pred CCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--cceeeeecCCCCcEEEEEECCC
Confidence 9999999999999998887755433222211 12345889999999999999987 7766666655555566677777
Q ss_pred CC-EEEEEeeCCeEEEEc-CCCC-EEEEeec----------------CCceeecCccccc-CCCeEEEEeeCCeEEEEeC
Q 003331 656 NR-HVICCLVDGHVVALD-SSGS-IIWRCRT----------------GGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 656 ~~-~l~~~~~~g~i~~~d-~~g~-~~w~~~~----------------~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~ 715 (829)
+. .+++++.+|.|..|| .++. .+..... ...+... ... .+..+++++.+|.|..||.
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~l~~~~~dg~i~vwd~ 274 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGL---CFTSDGLHLLTVGTDNRMRLWNS 274 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEE---EECTTSSEEEEEETTSCEEEEET
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEE---EEcCCCCEEEEecCCCeEEEEEC
Confidence 66 478899999999999 6554 3222211 1112111 112 2346888899999999999
Q ss_pred CCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc
Q 003331 716 ESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795 (829)
Q Consensus 716 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (829)
.+++................. . ..........+++++.+|.|.+||..++ +....+.....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~i~v~d~~~~-------------~~~~~~~~~~~ 335 (408)
T 4a11_B 275 SNGENTLVNYGKVCNNSKKGL----K--FTVSCGCSSEFVFVPYGSTIAVYTVYSG-------------EQITMLKGHYK 335 (408)
T ss_dssp TTCCBCCCCCCCCCCCCSSCC----C--CEECCSSSSCEEEEEETTEEEEEETTTC-------------CEEEEECCCSS
T ss_pred CCCccceeccccccccccccc----e--eEEecCCCceEEEEecCCEEEEEECcCC-------------cceeeeccCCC
Confidence 998765432211100000000 0 0000112566777778999999998765 23333332222
Q ss_pred ccccceE--ECCEEEEeeeCCeEEEEecccccc
Q 003331 796 IFSSPVM--IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 796 ~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
.+....+ .+..|+.++.||.|+.||..+++.
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 2333333 246788899999999999998764
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-15 Score=125.53 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHH----HHHHHHHHhcCCC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFL----SSIKSWVSSKLPL 242 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~l~~~l~~~l~~ 242 (829)
.|.|||||++|+||+|.|||++|.+||+|.++++++.++...+..+.++++............ +++++.++..+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~-- 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI-- 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh--
Confidence 389999999999999999999999999999999999888888888999998887655443333 44455554443
Q ss_pred CCcCCeEEEe--CcccCCCCCCcchhh-hcc
Q 003331 243 AMIPNRFVFM--DSLPMTSSGKVDYAS-LSA 270 (829)
Q Consensus 243 ~~~p~~~~~~--~~lP~t~~GKi~r~~-l~~ 270 (829)
.+|..+.++ .+||+| +||++|-. +++
T Consensus 79 -gv~~~v~~v~~~~lPrt-sGKi~Rv~D~R~ 107 (109)
T 3lax_A 79 -LVTPRVKLVPKGALPKS-EGKAVRVKDLRK 107 (109)
T ss_dssp -SSCCEEEEECTTCSCCC----CCCEEECSC
T ss_pred -CCccceEEEcCCeecCC-CCCcchhhhhcc
Confidence 244455555 479998 79998842 444
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=139.72 Aligned_cols=296 Identities=12% Similarity=0.131 Sum_probs=182.3
Q ss_pred CCceeeceEEeeCCcEEE-EEEe---CCEEEEEEcCCCcEEEEE--ecCCeeeeeeeeecC---CCEEEEeccCCeEEEE
Q 003331 515 EGRIECSAAVLADFSQVV-VGCY---KGKIYFLDYLTGDIYWTF--QTCGEVKCQPVVDAP---RQLIWCGSHDHNLYAL 585 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~-vg~~---dg~l~~~d~~tG~~~w~~--~~~~~~~~~~~~~~~---~~~i~~gs~~g~l~~~ 585 (829)
+.....+..+++++..++ +|+. |+.|+.||..+++..... .....+ ....+.++ +..+++++.++.++.|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iw 95 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPI-KCGTFGATSLQQRYLATGDFGGNLHIW 95 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCE-EEEECTTCCTTTCCEEEEETTSCEEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcE-EEEEEcCCCCCCceEEEecCCCeEEEE
Confidence 444445667777775554 5555 899999999999875443 333333 33445554 5889999999999999
Q ss_pred EcCCCe-EEEeeccCCcccccc------eeecCCCEEEEEecCCeEEEEEccCCCce-EEEeeccCCc----ceeeee--
Q 003331 586 DFRNYR-CVYKLPCGGSIFGSP------AIDEVHDVLYVASTSGRLTAISVKALPFH-TLWLHELEVP----AFASLC-- 651 (829)
Q Consensus 586 d~~tg~-~~w~~~~~~~~~~~~------~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-~~w~~~~~~~----~~~s~~-- 651 (829)
|..+++ .+..+..+....... .+..++..++.++.+|.+..||..+ ++ .+..+..... ...+..
T Consensus 96 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~ 173 (357)
T 3i2n_A 96 NLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQ--KDDPVANMEPVQGENKRDCWTVAFG 173 (357)
T ss_dssp CTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTS--CSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred eCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCC--CCCcceeccccCCCCCCceEEEEEE
Confidence 999887 666665444333333 3455567899999999999999987 44 3433332211 222222
Q ss_pred --eeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEe--
Q 003331 652 --ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYS-- 725 (829)
Q Consensus 652 --~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~-- 725 (829)
+.+++..+++++.++.|..|| .+++..+.......+....+.+.. .+..+++++.+|.|+.||..+++....+.
T Consensus 174 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 253 (357)
T 3i2n_A 174 NAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASV 253 (357)
T ss_dssp CCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEE
T ss_pred eccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeee
Confidence 446788999999999999999 888887766555555443322211 35678899999999999988876554432
Q ss_pred ---c-CCccccccccccccccccccccCCCc-EEEEEccCCcEEEEEeecCccccccccccc------cceeeeeeccCC
Q 003331 726 ---V-GDPITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRVNLDVTGKENQSKDH------MVQEFAKLELQG 794 (829)
Q Consensus 726 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 794 (829)
. ...+....+. +.+. ++++++.||.|++||.+.+........... ..+.+.......
T Consensus 254 ~~~~~~~~v~~~~~~------------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 321 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHL------------PQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321 (357)
T ss_dssp EEECCSSCEEEEEEE------------TTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCS
T ss_pred ccCCCcCCEEEEEEC------------CCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCC
Confidence 2 2222221111 1244 789999999999999986532211000000 001222222222
Q ss_pred cccccceE--ECCEEE-EeeeCCeEEEEeccccc
Q 003331 795 DIFSSPVM--IGGRVF-VGCRDDYIYCIALETQH 825 (829)
Q Consensus 795 ~~~~s~~~--~~~~l~-vg~~~g~l~~~d~~tg~ 825 (829)
..+.+... .+..|+ .++.||.|+.||..+.+
T Consensus 322 ~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 322 QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 22233322 244566 58889999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-12 Score=133.29 Aligned_cols=269 Identities=10% Similarity=0.084 Sum_probs=172.1
Q ss_pred EEEEecCCCcEEEEECCCCc--EEEEEE-c-CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-------CcEEEEEec
Q 003331 488 YLFVGSHSHKFICADAKRSS--VLWEIK-L-EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-------GDIYWTFQT 556 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~--~~w~~~-~-~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-------G~~~w~~~~ 556 (829)
.|..|+.|+.|..||..++. ....+. . +.....+..+++++..+++|+.|+.|..||..+ ++.+..+..
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 105 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC
Confidence 78889999999999998764 333331 1 334455677888889999999999999999753 334444544
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-C---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-Y---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL 632 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~ 632 (829)
+........+.+++..|++++.|+.++.||..+ + +++..+..+........+.+++..++.++.|+.+..||..+.
T Consensus 106 h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp ---CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 444445556777788999999999999999843 2 455555555555556666777788999999999999998762
Q ss_pred CceEEEeeccCCcceeeeeeeec--CCEEEEEeeCCeEEEEc-CCC----CEEEEe----e--cCCceeecCcccccCCC
Q 003331 633 PFHTLWLHELEVPAFASLCITSA--NRHVICCLVDGHVVALD-SSG----SIIWRC----R--TGGPIFAGPCTSFALPS 699 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~~s~~~~~~--~~~l~~~~~~g~i~~~d-~~g----~~~w~~----~--~~~~~~~~~~~~~~~~~ 699 (829)
..+.+..+..+.....+..+.++ +..++.++.|+.|.+|| .++ ...|.. . ....+.... ...++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~---~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVA---WGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEE---ECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEE---EcCCC
Confidence 22444444444444445556555 45788899999999998 433 222322 1 111222221 22456
Q ss_pred eEEEEeeCCeEEEEeCCCCcE--EEEEecCC---ccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 700 QVLICSRNGSIYSFEQESGNL--LWEYSVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~tG~~--~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
.+..++.||.|..||..+++. .-...... .+....+.. ...+..++.++.||.|.+||.+
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~----------~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE----------LNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---------------CCEEEEETTSEEEEEEC-
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEec----------CCCceEEEEecCCCcEEEEEec
Confidence 788999999999999887752 21211111 111111111 0125688999999999999875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-12 Score=132.62 Aligned_cols=273 Identities=11% Similarity=0.087 Sum_probs=180.6
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~ 557 (829)
+.++..|..|+.|+.|..||..+++...... .+.....+..+++++..+++|+.|+.+..||..++.. +..+..+
T Consensus 25 sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h 104 (345)
T 3fm0_A 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH 104 (345)
T ss_dssp CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC
T ss_pred CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC
Confidence 3356788899999999999998886543322 2334455778888999999999999999999887753 4445545
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
........+.+++..+++++.|+.++.||..+++ .+..+..+........+.+++..++.++.++.+..|+..+ +
T Consensus 105 ~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~--~ 182 (345)
T 3fm0_A 105 ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE--D 182 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET--T
T ss_pred CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC--C
Confidence 4445556677778899999999999999998763 3333444444445566677678899999999999999886 4
Q ss_pred eE--EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC-E----------EEE----ee--cCCceeecCccc
Q 003331 635 HT--LWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS-I----------IWR----CR--TGGPIFAGPCTS 694 (829)
Q Consensus 635 ~~--~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~-~----------~w~----~~--~~~~~~~~~~~~ 694 (829)
+. ...+..+.....+..+.+++..++.++.|+.|.+|+ ..+. . .|. .. ....+.....
T Consensus 183 ~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 260 (345)
T 3fm0_A 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW-- 260 (345)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEE--
T ss_pred CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEE--
Confidence 42 233444444456677888889999999999999998 3221 0 111 10 0111221111
Q ss_pred ccCCCeEEEEeeCCeEEEEeCCCCcE----EEEEe------cCCccccccccccccccccccccCCC-cEEEEEccCCcE
Q 003331 695 FALPSQVLICSRNGSIYSFEQESGNL----LWEYS------VGDPITASAYIDEHLQLKLESCLSID-RLVCICTSSGSI 763 (829)
Q Consensus 695 ~~~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~G~l 763 (829)
...++.+..++.|+.|..|+..++.. ..... ....+....+ .+.+ +.++.++.||.|
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~------------~p~~~~~laS~s~Dg~v 328 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAW------------NPKEPGLLASCSDDGEV 328 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEE------------CSSSTTEEEEEETTSCE
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEE------------eCCCceEEEEcCCCCcE
Confidence 11245688889999999998765431 11111 1111221111 1223 589999999999
Q ss_pred EEEEeecC
Q 003331 764 HILRVNLD 771 (829)
Q Consensus 764 ~~~d~~~~ 771 (829)
.+|+..++
T Consensus 329 ~~W~~~~~ 336 (345)
T 3fm0_A 329 AFWKYQRP 336 (345)
T ss_dssp EEEEECC-
T ss_pred EEEEecCC
Confidence 99998855
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=149.79 Aligned_cols=236 Identities=9% Similarity=-0.018 Sum_probs=165.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCC----CcEEEEEEcCCceeeceEEeeC-CcEEEEEEeCCEEEEEEcCCCc------EE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKR----SSVLWEIKLEGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYLTGD------IY 551 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~t----g~~~w~~~~~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG~------~~ 551 (829)
..++..|++|+.+|.|..||..+ .+....+..+.....+..+.++ +..+++++.|+.|+.||..+++ ..
T Consensus 76 s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 155 (416)
T 2pm9_A 76 SHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP 155 (416)
T ss_dssp CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC
T ss_pred CCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccc
Confidence 34567888999999999999987 3455555555544456677776 7789999999999999999887 33
Q ss_pred EEE---ecCCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccC------CcccccceeecCC-CEEEEEec
Q 003331 552 WTF---QTCGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------GSIFGSPAIDEVH-DVLYVAST 620 (829)
Q Consensus 552 w~~---~~~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~-~~l~v~t~ 620 (829)
... ..+........+.++ +..+++++.++.|+.||..+++.+..+... ........+.+++ ..+++++.
T Consensus 156 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 235 (416)
T 2pm9_A 156 LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235 (416)
T ss_dssp BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC
T ss_pred cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEEC
Confidence 322 112222334455555 678889999999999999999998887764 3444555666654 47888888
Q ss_pred CC---eEEEEEccCCCc-eEEEeec-cCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcc
Q 003331 621 SG---RLTAISVKALPF-HTLWLHE-LEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCT 693 (829)
Q Consensus 621 ~g---~l~~~~~~~~~g-~~~w~~~-~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~ 693 (829)
++ .|..||..+ + ..+..+. .......+..+.+ ++..+++++.++.|.+|| .+++.+..+............
T Consensus 236 d~~~~~i~~~d~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 236 SDNDPSILIWDLRN--ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp CSSSCCCCEEETTS--TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred CCCCceEEEEeCCC--CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence 88 999999987 4 3444443 3333445666666 678899999999999999 889888776643321111111
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 694 SFALPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
..+....++.++.||.|..||..+++.
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 111124788888999999999987764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-12 Score=152.50 Aligned_cols=314 Identities=7% Similarity=0.005 Sum_probs=174.2
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec----
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT---- 556 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~---- 556 (829)
..|.++.||+||.+| +++||..++++.-... ....+ .... .+++.+|+++.+ +|+++|..+++.......
T Consensus 69 ~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i--~~i~-~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l 143 (758)
T 3ott_A 69 VIIDNTYLYMGTDNG-ILVYNYRADRYEQPETDFPTDV--RTMA-LQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGL 143 (758)
T ss_dssp EEETTTEEEEEETTE-EEEEETTTTEECCCSCCCCSCE--EEEE-EETTEEEEEETT-EEEEEETTTCCEEEECHHHHCC
T ss_pred EEcCCCcEEEEeCCC-eEEEeCCCCEEECcccCCCceE--EEEE-ecCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCc
Confidence 356789999999876 8999998876532100 01112 2222 345789999865 899999888776432111
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
... ....++.+.++.||+|+. ++|+.+|..+++........ .....+.+.+.+++.||+++. ++|+.+|+.+
T Consensus 144 ~~~-~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 144 PNN-TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp SCS-CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT
T ss_pred CCC-eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC
Confidence 111 122244456789999986 47999999888754321111 111223444444568999996 5699999876
Q ss_pred CCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--ceeecC---cccccCCCeEEEEe
Q 003331 632 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--PIFAGP---CTSFALPSQVLICS 705 (829)
Q Consensus 632 ~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--~~~~~~---~~~~~~~~~i~~~t 705 (829)
++........... ........++.+|+|+ +++++.++ .+++......... ..++.. ++..+.++.||+||
T Consensus 221 --~~~~~~~~l~~~~-i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 221 --GQIKQTEAFHNNS-IKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp --TEEEEEEEEEEEE-EEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred --CeEEeccCCCCCe-EEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 5432211111111 1112233578999999 56899999 6655432221111 111111 23356788999999
Q ss_pred eCCeEEEEeCCCCcEEEEEec--C----CccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003331 706 RNGSIYSFEQESGNLLWEYSV--G----DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
..| +..+. .+..+...... . .....+.+ ...++.+|+|+.+ +|+.++..++......+.
T Consensus 297 ~~G-l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~i~------------~D~~g~lWiGt~~-Gl~~~~~~~~~~~~~~~~ 361 (758)
T 3ott_A 297 DYG-ISLSR-YNSALQFIPISQITGTGDGNQFYSLF------------RDSKGFYWFGGAN-GLIRFTDPAGERHDAIWY 361 (758)
T ss_dssp SSS-EEEEC-CCC-CEEEEHHHHSCSCCCCBEEEEE------------ECTTCCEEEEETT-EEEEESCTTSSCCCCEEE
T ss_pred CCc-ccccc-cCCceeEEecccCCCCCCCceEEEEE------------EcCCCCEEEeeCC-cceeecccccccceeEEe
Confidence 876 66554 33333322110 0 01111111 2237899999864 688887654321111000
Q ss_pred ccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccc
Q 003331 780 KDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.... ....+....+.+... .++.||+|+ +++|++||.++++++
T Consensus 362 ~~~~----~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~ 405 (758)
T 3ott_A 362 RMGD----KTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFI 405 (758)
T ss_dssp CTTC----SSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE
T ss_pred ccCC----cCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEE
Confidence 0000 000122222333333 368999999 578999999888764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=143.21 Aligned_cols=267 Identities=17% Similarity=0.170 Sum_probs=173.4
Q ss_pred EECCCCcEEEEE-EcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCC---Cc---EEEEEecCCeeeeeeeeecCCCE
Q 003331 501 ADAKRSSVLWEI-KLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLT---GD---IYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 501 ~d~~tg~~~w~~-~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~t---G~---~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
|+ .+|+.+..+ ..+.....+..+++ ++..+++|+.|+.|..||..+ +. ....+.....+ ....+.+++..
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~ 125 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTV-TQITMIPNFDA 125 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCE-EEEEECTTSSE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCE-EEEEEeCCCCE
Confidence 44 346666666 44444456777888 888999999999999999877 43 23344433344 44456667788
Q ss_pred EEEeccCCeEEEEEcC---CCeEEEeeccC------------Ccccccc--eeecCCCEEEEEecCCeEEEEEccCCCce
Q 003331 573 IWCGSHDHNLYALDFR---NYRCVYKLPCG------------GSIFGSP--AIDEVHDVLYVASTSGRLTAISVKALPFH 635 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~---tg~~~w~~~~~------------~~~~~~~--~~~~~~~~l~v~t~~g~l~~~~~~~~~g~ 635 (829)
+++++.|+.|..||.. +|+........ ....... ...+++..+++++.+|.|..||+.+ ++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~ 203 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--LE 203 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT--CC
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Ce
Confidence 9999999999999984 55544322111 0011111 1224457888999999999999988 88
Q ss_pred EEEeecc--CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcc-cccCCC-eEEEEeeCC
Q 003331 636 TLWLHEL--EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCT-SFALPS-QVLICSRNG 708 (829)
Q Consensus 636 ~~w~~~~--~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~-~~~~~~-~i~~~t~~g 708 (829)
.++.+.. ......+..+.+++..+++++.+|.|.+|| .+++.+..+... .++...... ....++ .++.++.||
T Consensus 204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg 283 (437)
T 3gre_A 204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT 283 (437)
T ss_dssp EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence 8877765 334456667777888999999999999999 888887665432 233222111 112233 577788899
Q ss_pred eEEEEeCCCCcEEEEEecCCcccc-ccccccc--------------cccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 709 SIYSFEQESGNLLWEYSVGDPITA-SAYIDEH--------------LQLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 709 ~l~~~d~~tG~~~w~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.|..||..+++.+..+........ ..+.... ..+...... .+..+++++.||.|++||..++.
T Consensus 284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 999999999998877664322111 1110000 000000111 35789999999999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-13 Score=144.56 Aligned_cols=238 Identities=12% Similarity=0.051 Sum_probs=163.7
Q ss_pred CCeEEEEecCCCcEEEEECCC---Cc---EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC---CCcEEEEEe
Q 003331 485 SDIYLFVGSHSHKFICADAKR---SS---VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL---TGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~t---g~---~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~---tG~~~w~~~ 555 (829)
++..++.|+.||.|..||..+ +. ....+. +.....+..+.+++..+++++.|+.|..||.. +|+......
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 153 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN 153 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc
Confidence 567899999999999999876 43 233333 33334567788888899999999999999984 666554332
Q ss_pred cC-------------Ceeeee-eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccceeecCCCEEEEEe
Q 003331 556 TC-------------GEVKCQ-PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVAS 619 (829)
Q Consensus 556 ~~-------------~~~~~~-~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t 619 (829)
.+ ..+.+. ....+++..+++++.|+.|+.||..+++.++.+.. +........+.+++..+++++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 233 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGT 233 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence 11 111111 11234567889999999999999999999998876 344555666777778899999
Q ss_pred cCCeEEEEEccCCCceEEEeeccC-Ccceeeee----eeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-ee----
Q 003331 620 TSGRLTAISVKALPFHTLWLHELE-VPAFASLC----ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-IF---- 688 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~----~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-~~---- 688 (829)
.+|.|..||+.+ ++.+..+... .....+.. +..++..++.++.+|.|.+|| .+++.+..+..... +.
T Consensus 234 ~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 234 TRGIIDIWDIRF--NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp TTSCEEEEETTT--TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred CCCeEEEEEcCC--ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 999999999988 7776655422 22223332 223445788888899999999 88887766553211 00
Q ss_pred -----------------e--cCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEe
Q 003331 689 -----------------A--GPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 689 -----------------~--~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
. ..++....+..++.++.||.|+.||..+++....+.
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred cccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEe
Confidence 0 011122223468888899999999999998765544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.4e-12 Score=146.04 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=179.3
Q ss_pred eceEEeeC-CcEEEEEEeCCEEEEEEcCCC-----cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 520 CSAAVLAD-FSQVVVGCYKGKIYFLDYLTG-----DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 520 ~~~~~~~~-~~~v~vg~~dg~l~~~d~~tG-----~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
.+..+..+ ...+++|+.|+.|..||..++ .....+..+........+.+++..+++|+.|+.|+.||..+++.+
T Consensus 386 ~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~ 465 (694)
T 3dm0_A 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST 465 (694)
T ss_dssp EEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcce
Confidence 34444433 357889999999999998764 233445555554555667777889999999999999999999998
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc----CCcceeeeeeeecC--CEEEEEeeCCe
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL----EVPAFASLCITSAN--RHVICCLVDGH 667 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~----~~~~~~s~~~~~~~--~~l~~~~~~g~ 667 (829)
..+..+.....+..+.+++..++.++.|+.|..||... ........ +.....+..+.+++ ..++.++.++.
T Consensus 466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~ 542 (694)
T 3dm0_A 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT 542 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe
Confidence 88876666666677777778899999999999999764 33333221 12223344454443 57889999999
Q ss_pred EEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccc
Q 003331 668 VVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLE 745 (829)
Q Consensus 668 i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 745 (829)
|.+|| .+++....+.... .+.+..+.+ .+..+..++.||.|..||..+++.+..+.....+....+.
T Consensus 543 v~vwd~~~~~~~~~~~~h~~~v~~v~~sp--dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s--------- 611 (694)
T 3dm0_A 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFS--------- 611 (694)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEEEECT--TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEEC---------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEc---------
Confidence 99999 8888776654332 232221111 2446788899999999999999988766554433322211
Q ss_pred cccCCCcEEEEEccCCcEEEEEeecCccccccccccccc-eee---eeeccCCcc--cccceE--ECCEEEEeeeCCeEE
Q 003331 746 SCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMV-QEF---AKLELQGDI--FSSPVM--IGGRVFVGCRDDYIY 817 (829)
Q Consensus 746 ~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~--~~s~~~--~~~~l~vg~~~g~l~ 817 (829)
. ++.+++++.+++|.+||..++..-.......... ... ......... ..+... ++..|+.|+.||.|+
T Consensus 612 ---p-~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~ 687 (694)
T 3dm0_A 612 ---P-NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIR 687 (694)
T ss_dssp ---S-SSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ---C-CCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEE
Confidence 1 3344444556779999988653211110000000 000 000000000 111112 356899999999999
Q ss_pred EEecc
Q 003331 818 CIALE 822 (829)
Q Consensus 818 ~~d~~ 822 (829)
.||+.
T Consensus 688 iW~i~ 692 (694)
T 3dm0_A 688 VWGIG 692 (694)
T ss_dssp EEEC-
T ss_pred EEecc
Confidence 99975
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.5e-12 Score=151.38 Aligned_cols=301 Identities=15% Similarity=0.115 Sum_probs=168.7
Q ss_pred EEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCC---ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-
Q 003331 480 VVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEG---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ- 555 (829)
Q Consensus 480 v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~- 555 (829)
-+.+|.++.||+||.+| |..||..+ + ..+.... ......++.+..+.||+|+. .+|++||..+++......
T Consensus 26 ~I~qD~~G~lWigT~~G-L~ryDG~~--~-~~~~~~~~~~~~~i~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 26 CFLQDSEGLIWIGSNKG-LFSYDGYS--T-QQHFTYGENNNTRIYCGVIIDNTYLYMGTD-NGILVYNYRADRYEQPETD 100 (758)
T ss_dssp EEEECTTSCEEEEESSC-EEEECSSC--E-EECSCTTSTTSSCEEEEEEETTTEEEEEET-TEEEEEETTTTEECCCSCC
T ss_pred EEEECCCCCEEEEECCC-ccccCCCc--e-EEEEccCCCCCceEEEEEEcCCCcEEEEeC-CCeEEEeCCCCEEECcccC
Confidence 34678999999999887 88898532 1 1221111 11113344566689999995 569999988875432100
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
....+.. +.. .++.||+++.+ +|+.+|..+++....... ....+.+.+ .+.++.+|+++.+ +|+.++..+
T Consensus 101 ~~~~i~~--i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWigt~~-Gl~~~~~~~ 174 (758)
T 3ott_A 101 FPTDVRT--MAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSII-RTKDNQIYVGTYN-GLCRYIPSN 174 (758)
T ss_dssp CCSCEEE--EEE-ETTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEE-ECTTCCEEEEETT-EEEEEETTT
T ss_pred CCceEEE--EEe-cCCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEE-EcCCCCEEEEeCC-CHhhCccCC
Confidence 0111221 222 46899999876 799999988765432111 111122222 3346889999975 599999876
Q ss_pred CCceEEEeeccCC------cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEE
Q 003331 632 LPFHTLWLHELEV------PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLIC 704 (829)
Q Consensus 632 ~~g~~~w~~~~~~------~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~ 704 (829)
++... +.... ....+......++.+|+|+. ++++.+| .+++........... ...+..+.++.||+|
T Consensus 175 --~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~--i~~i~~d~~g~lWig 248 (758)
T 3ott_A 175 --GKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNS--IKSLALDGNGDLLAG 248 (758)
T ss_dssp --TEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEE--EEEEEECTTCCEEEE
T ss_pred --CceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCe--EEEEEEcCCCCEEEE
Confidence 44322 11111 11122222223567999995 6899999 665443211111111 112335668899999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCC-------ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccc
Q 003331 705 SRNGSIYSFEQESGNLLWEYSVGD-------PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKEN 777 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~ 777 (829)
|. ++|+.++..++++........ ....+.+. ..++.+|+|+..| +..+... ...
T Consensus 249 T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~------------D~~g~lWiGT~~G-l~~~~~~-~~~---- 309 (758)
T 3ott_A 249 TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA------------DQEHNIWLGTDYG-ISLSRYN-SAL---- 309 (758)
T ss_dssp ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE------------CTTCCEEEEESSS-EEEECCC-C-C----
T ss_pred eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE------------cCCCCEEEEeCCc-ccccccC-Cce----
Confidence 95 579999998887643221111 11111111 2378899999876 6554321 110
Q ss_pred ccccccceeeeee----ccCCcccccceE-ECCEEEEeeeCCeEEEEecccc
Q 003331 778 QSKDHMVQEFAKL----ELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 778 ~~~~~~~~~~~~~----~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg 824 (829)
+.+... .+.+..+.+... .++.||+|+. ++|++++..++
T Consensus 310 -------~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~ 353 (758)
T 3ott_A 310 -------QFIPISQITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAG 353 (758)
T ss_dssp -------EEEEHHHHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTS
T ss_pred -------eEEecccCCCCCCCceEEEEEEcCCCCEEEeeC-Ccceeeccccc
Confidence 111000 112223333333 3689999995 57999987654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-11 Score=126.64 Aligned_cols=292 Identities=11% Similarity=0.035 Sum_probs=172.8
Q ss_pred cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEe-c-CCeeeeeeeeecCCCEEEEeccCCeE
Q 003331 507 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQ-T-CGEVKCQPVVDAPRQLIWCGSHDHNL 582 (829)
Q Consensus 507 ~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~-~-~~~~~~~~~~~~~~~~i~~gs~~g~l 582 (829)
+.+..+..+.....+..++++ .+++|+.|+.|..||..++. ....+. . +........+.+++..+.+++.|+.+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 334444444443344555544 88999999999999988764 333332 2 33334455667778889999999999
Q ss_pred EEEEcCC-------CeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCC--CceEEEeeccCCcceeeeeee
Q 003331 583 YALDFRN-------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL--PFHTLWLHELEVPAFASLCIT 653 (829)
Q Consensus 583 ~~~d~~t-------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~--~g~~~w~~~~~~~~~~s~~~~ 653 (829)
+.||..+ ++++..+..+........+.+++..++.++.|+.+..||.... ..+.+..+..+.....+..+.
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 9999853 3444445444445556667777788999999999999998531 123344444444445566777
Q ss_pred ecCCEEEEEeeCCeEEEEc-CCC--CEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC----cEEEEEe
Q 003331 654 SANRHVICCLVDGHVVALD-SSG--SIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG----NLLWEYS 725 (829)
Q Consensus 654 ~~~~~l~~~~~~g~i~~~d-~~g--~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG----~~~w~~~ 725 (829)
+++..++.++.|+.|..|| .++ +.+..+... ..+....+.+......+..++.|+.|..||..++ ...|...
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 7888999999999999999 655 333333322 2333322111111235788899999999997654 2223221
Q ss_pred ------cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeee-ccCCc-cc
Q 003331 726 ------VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGD-IF 797 (829)
Q Consensus 726 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~ 797 (829)
....+....+. .++.+++++.||.|.+||..++.. +..... ..... .+
T Consensus 243 ~~~~~~h~~~v~~v~~s-------------~~~~l~s~~~dg~v~iw~~~~~~~-----------~~~~~~~~~h~~~~v 298 (330)
T 2hes_X 243 AILPDVHKRQVYNVAWG-------------FNGLIASVGADGVLAVYEEVDGEW-----------KVFAKRALCHGVYEI 298 (330)
T ss_dssp EECCSCCSSCEEEEEEC-------------TTSCEEEEETTSCEEEEEEETTEE-----------EEEEEESCTTTTSCE
T ss_pred eecccccccceEEEEEc-------------CCCEEEEEeCCCEEEEEEcCCCce-----------EEEeccccccccceE
Confidence 11112111111 256889999999999999875410 011111 11111 11
Q ss_pred c----cceEECCEEEEeeeCCeEEEEecccc
Q 003331 798 S----SPVMIGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 798 ~----s~~~~~~~l~vg~~~g~l~~~d~~tg 824 (829)
. +|...+..|..|+.||.|+.||.++.
T Consensus 299 ~~v~~~~~~~~~~las~s~Dg~v~~W~~~~~ 329 (330)
T 2hes_X 299 NVVKWLELNGKTILATGGDDGIVNFWSLEKA 329 (330)
T ss_dssp EEEEEC-----CCEEEEETTSEEEEEEC---
T ss_pred EEEEEecCCCceEEEEecCCCcEEEEEeccC
Confidence 1 12112446788999999999998753
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-11 Score=124.28 Aligned_cols=271 Identities=14% Similarity=0.090 Sum_probs=175.4
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC--CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
..+.+ +.|.+| .|+.|+.||..+|+.+..+..+ .....+..+.+++..+++|+.|+.+..||.++++.+..+..+.
T Consensus 32 ~WS~~-~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~ 109 (318)
T 4ggc_A 32 DWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS 109 (318)
T ss_dssp EECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred EECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc
Confidence 34444 466666 4999999999999998877543 3334555677778899999999999999999999998877655
Q ss_pred cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEE
Q 003331 601 SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w 679 (829)
........ ++..+..++.++.+..++..+. ...+..................+..++.++.++.+.+|| .+++...
T Consensus 110 ~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 110 ARVGSLSW--NSYILSSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp SCEEEEEE--ETTEEEEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred ceEEEeec--CCCEEEEEecCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence 44333333 3478889999998888887752 222333333333334555666788999999999999999 7665332
Q ss_pred E----ee-cCCceeecCcccccCCCeEEE--EeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc
Q 003331 680 R----CR-TGGPIFAGPCTSFALPSQVLI--CSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 680 ~----~~-~~~~~~~~~~~~~~~~~~i~~--~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
. .. ..+.+...... ......+++ ++.++.|..||..++...........+....+... ++
T Consensus 187 ~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~------------~~ 253 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH------------YK 253 (318)
T ss_dssp CCSEEECCCCSCEEEEEEC-TTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT------------TT
T ss_pred cceeeecccCCceEEEEec-CCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc------------cc
Confidence 1 11 11222222111 112233433 34678899999998888776665555443332222 55
Q ss_pred EEEEE--ccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003331 753 LVCIC--TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 753 ~l~~~--~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.++++ +.||.|++||..++ +....+.-+...+.+..+ .+..|+.|+.||.|..||+.+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~-------------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTM-------------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ceEEEEEcCCCEEEEEECCCC-------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 55554 47899999998865 233333322233333333 3557888999999999998643
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-11 Score=126.84 Aligned_cols=277 Identities=13% Similarity=0.087 Sum_probs=177.5
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcE-EEEEecCCeee
Q 003331 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDI-YWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~-~w~~~~~~~~~ 561 (829)
..+.+|+ .+.++.|..||..+|+.......+.... ...++++++.+|+.+. ++.|+.||..+++. ......+....
T Consensus 8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 3455555 4467899999999999988877665544 7778888888888877 78999999999997 66665554444
Q ss_pred eeeeeecCCCEEEEeccCC---eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCe-EEEEEccCCCceE
Q 003331 562 CQPVVDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGR-LTAISVKALPFHT 636 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~-l~~~~~~~~~g~~ 636 (829)
....+.+++..++++..++ .|+.||..+++.+..+..+... ..+.+++++..+|++.. ++. +..|+.+. .|..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-~g~~ 164 (331)
T 3u4y_A 87 ADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDA-VGIAISPNGNGLILIDRSSANTVRRFKIDA-DGVL 164 (331)
T ss_dssp CCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTE-EEEEECTTSSCEEEEEETTTTEEEEEEECT-TCCE
T ss_pred cceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCc-cceEECCCCCEEEEEecCCCceEEEEEECC-CCcE
Confidence 4356777778888655553 8999999999988877654433 45667776677887754 467 88888774 2332
Q ss_pred EEe---eccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCE---EEEeecCCceeecCcccccCCC-eEEEEee-
Q 003331 637 LWL---HELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSI---IWRCRTGGPIFAGPCTSFALPS-QVLICSR- 706 (829)
Q Consensus 637 ~w~---~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~---~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~- 706 (829)
... ............+.++++.+|+.. .++.|.+|| .+++. +.....+..... +....++ .+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 165 FDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGT---IVVSRDGSTVYVLTES 241 (331)
T ss_dssp EEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCC---EEECTTSSEEEEECSS
T ss_pred eecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCce---EEECCCCCEEEEEEcC
Confidence 211 111112224556777787788776 468899999 88887 666554432211 1222344 4777754
Q ss_pred CCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeecC
Q 003331 707 NGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 707 ~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~ 771 (829)
++.|+.||.++|++......... ....+.... .......++..+|+++. ++.|.+||....
T Consensus 242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA----NQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC----CCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CCEEEEEECCCCceeeecccccccccCCCCcccc----cceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 56799999999988432221111 100000000 00012234777777655 568999998743
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-12 Score=133.51 Aligned_cols=257 Identities=12% Similarity=0.099 Sum_probs=174.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCc----EEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEc-CCCcEEEEEec--
Q 003331 485 SDIYLFVGSHSHKFICADAKRSS----VLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDY-LTGDIYWTFQT-- 556 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~-~tG~~~w~~~~-- 556 (829)
++..+++++.++.|..||..+++ ..... .+.....+..+.+++. .+++|+.|+.|+.||. .+++.. .+..
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~ 99 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNNE 99 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSCC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccccC
Confidence 46678999999999999998887 44433 3344445677888888 8999999999999999 888763 3443
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC---------CeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN---------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAI 627 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~ 627 (829)
+........+.+ ++.+++++.|+.|+.||..+ ++++..+..... .....+.+ +.+++++.++.|..|
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~--~~l~~~~~d~~i~i~ 175 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK-IFTMDTNS--SRLIVGMNNSQVQWF 175 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC-EEEEEECS--SEEEEEESTTEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc-eEEEEecC--CcEEEEeCCCeEEEE
Confidence 433344455666 78999999999999999887 666665553332 33344444 449999999999999
Q ss_pred EccC-CCceEEEeeccCCcceeeeeeee-cCCEEEEEeeCCeEEEEc-CCC------CEEEEeecCC----------cee
Q 003331 628 SVKA-LPFHTLWLHELEVPAFASLCITS-ANRHVICCLVDGHVVALD-SSG------SIIWRCRTGG----------PIF 688 (829)
Q Consensus 628 ~~~~-~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d-~~g------~~~w~~~~~~----------~~~ 688 (829)
|..+ .................+..+.+ ++..+++++.+|.+.+|+ ..+ +....+.... .+.
T Consensus 176 d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp ESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred ECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 9875 22111111112222335566777 788999999999999988 544 5555554332 222
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC-CccccccccccccccccccccCCCcEEEEEccCCc
Q 003331 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG-DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
...+ ...+..+++++.+|.|+.||..+++.+..+... ........ .++..+++++.||.
T Consensus 256 ~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-------------~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 256 SIEF--SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-------------CSDNILCLATSDDT 315 (342)
T ss_dssp EEEE--CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-------------ECSSEEEEEEECTH
T ss_pred EEEE--cCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-------------CCCCeEEEEecCCc
Confidence 2211 112456888999999999999999988776543 22211111 22778888888885
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-12 Score=137.01 Aligned_cols=286 Identities=7% Similarity=0.010 Sum_probs=176.6
Q ss_pred EEcCCceeeceEEeeC---CcEEEEEEeCCEEEEEEcCC-CcEE-EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEE
Q 003331 512 IKLEGRIECSAAVLAD---FSQVVVGCYKGKIYFLDYLT-GDIY-WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~---~~~v~vg~~dg~l~~~d~~t-G~~~-w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d 586 (829)
+..+.....+..++++ +..+++|+.|+.|+.||..+ ++.+ ..+..+........+.+++..+++++.||.|+.||
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd 114 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD 114 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence 3344444567778877 47899999999999999987 6554 44554554455566777778999999999999999
Q ss_pred cCCCeEEEeeccCCccccccee--ecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAI--DEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~--~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
..+++.+........ .....+ ..++..+++++.+|.+..||..+ ++.+..+...... ..+......+++++.
T Consensus 115 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 188 (368)
T 3mmy_A 115 LSSNQAIQIAQHDAP-VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNPMMVLQLPERC---YCADVIYPMAVVATA 188 (368)
T ss_dssp TTTTEEEEEEECSSC-EEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSCSEEEECSSCE---EEEEEETTEEEEEEG
T ss_pred cCCCCceeeccccCc-eEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcEEEEEecCCCc---eEEEecCCeeEEEeC
Confidence 999998775544333 333444 55456788899999999999987 7777666654432 233334668889999
Q ss_pred CCeEEEEc-CCCCEEEEeecC---CceeecCccccc--CCCeEEEEeeCCeEEEEeCCCC---cEEEEEecCCcccccc-
Q 003331 665 DGHVVALD-SSGSIIWRCRTG---GPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESG---NLLWEYSVGDPITASA- 734 (829)
Q Consensus 665 ~g~i~~~d-~~g~~~w~~~~~---~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~- 734 (829)
++.+..|+ .++...+..... .......+.... ....+++++.+|.|..||..++ +....+..........
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 99999999 655544433211 111111100010 1123889999999999999887 3444444332210000
Q ss_pred ccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeee
Q 003331 735 YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR 812 (829)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~ 812 (829)
.......+.......++.++++++.||.|++||..++ +....+......+..... .+..|..++.
T Consensus 269 ~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 269 APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-------------TKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred ccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-------------cEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 0000000001112234779999999999999998865 223333322222222222 3457777877
Q ss_pred CCeE
Q 003331 813 DDYI 816 (829)
Q Consensus 813 ~g~l 816 (829)
++..
T Consensus 336 d~~~ 339 (368)
T 3mmy_A 336 YDWS 339 (368)
T ss_dssp CCST
T ss_pred cccc
Confidence 6643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-11 Score=134.04 Aligned_cols=289 Identities=11% Similarity=0.031 Sum_probs=179.8
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCe--------------------------------------
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGE-------------------------------------- 559 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~-------------------------------------- 559 (829)
+..++.++..++ ++.++.|+.||..+|+ .+..+..+..
T Consensus 9 ~v~~s~dg~~l~-~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (450)
T 2vdu_B 9 NLLTSRDGSLVF-AIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT 87 (450)
T ss_dssp EEEECSSSSEEE-EEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred EEEecCCCCEEE-EEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence 445677777554 4468899999999998 5433332110
Q ss_pred ----------------eeeeeeeecCCCEE-EEeccCCeEEEEEcC--CCeEEEeecc--CCcccccceeecCCCEEEEE
Q 003331 560 ----------------VKCQPVVDAPRQLI-WCGSHDHNLYALDFR--NYRCVYKLPC--GGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 560 ----------------~~~~~~~~~~~~~i-~~gs~~g~l~~~d~~--tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~ 618 (829)
......+.+++..+ ++++.|+.+..||.. +|+.+..+.. .........+.+++..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 88 AAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp ------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 13344566667775 778899999999998 8877766542 23334456677777899999
Q ss_pred ecCCeEEEEEccCCCceEEE----eeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeec--CCcee
Q 003331 619 STSGRLTAISVKALPFHTLW----LHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRT--GGPIF 688 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w----~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~--~~~~~ 688 (829)
+.+|.++.|+..+ ++... .+........+..+.++ +..++.++.++.|.+|| .+++.+..+.. ...+.
T Consensus 168 ~~~g~v~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 168 DKFGDVYSIDINS--IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp ETTSEEEEEETTS--CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred eCCCcEEEEecCC--cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 9999999999876 44321 22223333456677777 67889999999999999 88887755332 22333
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccc--------------ccccccccccccCCCcEE
Q 003331 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYI--------------DEHLQLKLESCLSIDRLV 754 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l 754 (829)
... .. .+..++.++.|+.|..||..+|+.+..+.....+...... .....+.......++.++
T Consensus 246 ~~~-~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 246 SIC-CG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEE-EC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEE-EC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 322 22 4567889999999999999999988776643211100000 000000111123347788
Q ss_pred EEEc-cCCcEEEEEe--ecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCC----------eEEEEec
Q 003331 755 CICT-SSGSIHILRV--NLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDD----------YIYCIAL 821 (829)
Q Consensus 755 ~~~~-~~G~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g----------~l~~~d~ 821 (829)
++++ .++.|++|+. ..+.. .+........+. +....+..+.+++...+. .+|.++.
T Consensus 323 ~~~~~~d~~i~iw~~~~~~~~~----------l~~~~~~~~~~~-v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 323 AFFVEATKCIIILEMSEKQKGD----------LALKQIITFPYN-VISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEETTCSEEEEEEECSSSTTC----------EEEEEEEECSSC-EEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEECCCCeEEEEEeccCCCCc----------eeeccEeccCCc-eEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 8888 8999999998 32200 122233333322 333444556666664332 6777777
Q ss_pred ccccc
Q 003331 822 ETQHL 826 (829)
Q Consensus 822 ~tg~~ 826 (829)
+++++
T Consensus 392 ~~~~~ 396 (450)
T 2vdu_B 392 NENSF 396 (450)
T ss_dssp TTTEE
T ss_pred CCCeE
Confidence 77765
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.8e-12 Score=137.09 Aligned_cols=237 Identities=10% Similarity=0.035 Sum_probs=158.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc-----------EEEEEEcCC------------ceeeceEEeeCC--cEEEEEEe
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSS-----------VLWEIKLEG------------RIECSAAVLADF--SQVVVGCY 536 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~-----------~~w~~~~~~------------~~~~~~~~~~~~--~~v~vg~~ 536 (829)
++.++..|.+|+.+|.|..||..+++ +...+..+. ....+..+.+++ ..+++++.
T Consensus 36 ~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~ 115 (447)
T 3dw8_B 36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTN 115 (447)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCC
Confidence 34467789999999999999998877 344555553 334566777776 68999999
Q ss_pred CCEEEEEEcCCCcEEE---------------------------------------EE-ecCCeeeeeeeeecCCCEEEEe
Q 003331 537 KGKIYFLDYLTGDIYW---------------------------------------TF-QTCGEVKCQPVVDAPRQLIWCG 576 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w---------------------------------------~~-~~~~~~~~~~~~~~~~~~i~~g 576 (829)
|+.|..||..+++... .+ ..+........+.+++..+++|
T Consensus 116 d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 195 (447)
T 3dw8_B 116 DKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA 195 (447)
T ss_dssp SSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE
T ss_pred CCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe
Confidence 9999999987755431 11 1122223344556667778777
Q ss_pred ccCCeEEEEEcCCCeEEEe--------eccCCcccccceeecCC-CEEEEEecCCeEEEEEccCCCceE----EEeeccC
Q 003331 577 SHDHNLYALDFRNYRCVYK--------LPCGGSIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHT----LWLHELE 643 (829)
Q Consensus 577 s~~g~l~~~d~~tg~~~w~--------~~~~~~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~----~w~~~~~ 643 (829)
.|+.|+.||..++..... +..+........+.+++ ..+++++.+|.|..||..+ ++. ...+...
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~ 272 (447)
T 3dw8_B 196 -DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA--SALCDRHSKLFEEP 272 (447)
T ss_dssp -CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT--CSSSCTTCEEECCC
T ss_pred -CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC--CccccceeeEeccC
Confidence 799999999985443333 22233445556667666 7899999999999999987 553 3334333
Q ss_pred Cc------------ceeeeeeeecCCEEEEEeeCCeEEEEc-CC-CCEEEEeecCCceeec-------------Cccccc
Q 003331 644 VP------------AFASLCITSANRHVICCLVDGHVVALD-SS-GSIIWRCRTGGPIFAG-------------PCTSFA 696 (829)
Q Consensus 644 ~~------------~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~-g~~~w~~~~~~~~~~~-------------~~~~~~ 696 (829)
.. ...+..+.+++..++.++. +.|.+|| .+ ++.+..+.....+... ..+...
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s 351 (447)
T 3dw8_B 273 EDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC
T ss_pred CCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEEC
Confidence 32 4456677777888888887 9999999 65 7766555443221110 001122
Q ss_pred -CCCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 697 -LPSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 697 -~~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
.+..|+.++.||.|+.||..+++.+.
T Consensus 352 ~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 352 GSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCccee
Confidence 24468889999999999999998763
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=131.78 Aligned_cols=256 Identities=11% Similarity=0.069 Sum_probs=172.3
Q ss_pred CeEEEEecCCCcEEEEECCC-CcEE-EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKR-SSVL-WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t-g~~~-w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..|++|+.+|.|..||..+ ++.. ..+..+.....+..+.+++..+++++.|+.|..||..+++.+........+.+.
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~ 133 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTI 133 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEE
Confidence 47899999999999999987 5554 445555555567788888889999999999999999999988766555554443
Q ss_pred eee--ecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 564 PVV--DAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 564 ~~~--~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.+ .+++..+++++.|+.++.||..+++.+..+........ .... ...+++++.++.+..|+... ....+...
T Consensus 134 -~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~~~~~ 207 (368)
T 3mmy_A 134 -HWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYC-ADVI--YPMAVVATAERGLIVYQLEN--QPSEFRRI 207 (368)
T ss_dssp -EEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEE-EEEE--TTEEEEEEGGGCEEEEECSS--SCEEEEEC
T ss_pred -EEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceE-EEec--CCeeEEEeCCCcEEEEEecc--ccchhhhc
Confidence 44 45566788999999999999999988887766553322 2222 47888899999999999886 33333221
Q ss_pred cC--CcceeeeeeeecCC----EEEEEeeCCeEEEEc-CCC---CEEEEeecCC-------------ceeecCccccc-C
Q 003331 642 LE--VPAFASLCITSANR----HVICCLVDGHVVALD-SSG---SIIWRCRTGG-------------PIFAGPCTSFA-L 697 (829)
Q Consensus 642 ~~--~~~~~s~~~~~~~~----~l~~~~~~g~i~~~d-~~g---~~~w~~~~~~-------------~~~~~~~~~~~-~ 697 (829)
.. ........+..... .+++++.+|.+..|+ ..+ .....+.... .+... ... .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~sp~ 284 (368)
T 3mmy_A 208 ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI---AFHPV 284 (368)
T ss_dssp CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE---EECTT
T ss_pred cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE---EEecC
Confidence 11 11112222332222 388899999999999 655 2333333221 12221 122 2
Q ss_pred CCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 698 PSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+..+++++.||.|+.||..+++.+..+............ ..++.++++++.++
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF-----------NHNGNIFAYASSYD 337 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE-----------CTTSSCEEEEECCC
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE-----------CCCCCeEEEEeccc
Confidence 347888999999999999999988776543322221111 22377888888776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-12 Score=137.81 Aligned_cols=226 Identities=11% Similarity=0.032 Sum_probs=157.1
Q ss_pred EEEecCCCcEEEEECCCC-cE---EEEEEcCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCC-------cEEEEEec
Q 003331 489 LFVGSHSHKFICADAKRS-SV---LWEIKLEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTG-------DIYWTFQT 556 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg-~~---~w~~~~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG-------~~~w~~~~ 556 (829)
++.++.+|.|..||..+. +. ...+..+.....+..+.+ ++..+++|+.|+.|..||..++ +.+..+..
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 129 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC
Confidence 444678899999998543 21 112233444455677777 7789999999999999999988 45556655
Q ss_pred CCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEee--ccCCcccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 557 CGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKL--PCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 557 ~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+........+.+++ ..+++++.|+.|+.||..+++.+..+ ..+........+.+++..+++++.+|.|..||+.+
T Consensus 130 h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-- 207 (402)
T 2aq5_A 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK-- 207 (402)
T ss_dssp CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--
T ss_pred CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--
Confidence 55545555666654 68899999999999999999999888 44555556667777778899999999999999988
Q ss_pred ceEEEee-ccCCcc-eeeeeeeecCCEEEEE---eeCCeEEEEc-CCCCE-EEEe--ecCCceeecCcccccC-CCeEEE
Q 003331 634 FHTLWLH-ELEVPA-FASLCITSANRHVICC---LVDGHVVALD-SSGSI-IWRC--RTGGPIFAGPCTSFAL-PSQVLI 703 (829)
Q Consensus 634 g~~~w~~-~~~~~~-~~s~~~~~~~~~l~~~---~~~g~i~~~d-~~g~~-~w~~--~~~~~~~~~~~~~~~~-~~~i~~ 703 (829)
++.+... ...... .....+.+++..+++| +.++.|.+|| .+++. +... .....+... .... +..+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~ 284 (402)
T 2aq5_A 208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP---FFDPDTNIVYL 284 (402)
T ss_dssp TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE---EEETTTTEEEE
T ss_pred CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE---EEcCCCCEEEE
Confidence 8877766 333222 3455566666666777 5789999999 66543 2222 222222221 1222 345654
Q ss_pred -EeeCCeEEEEeCCCCc
Q 003331 704 -CSRNGSIYSFEQESGN 719 (829)
Q Consensus 704 -~t~~g~l~~~d~~tG~ 719 (829)
++.||.|+.||..+++
T Consensus 285 ~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 285 CGKGDSSIRYFEITSEA 301 (402)
T ss_dssp EETTCSCEEEEEECSST
T ss_pred EEcCCCeEEEEEecCCC
Confidence 4569999999999988
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-11 Score=129.23 Aligned_cols=289 Identities=8% Similarity=-0.008 Sum_probs=178.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE---ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe--EE
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF---QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR--CV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~--~~ 593 (829)
.....+++++..|++|+.|+.|..||..+++..... ..+........+.+++..|++|+.|+.+..||..+++ .+
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~ 98 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECV 98 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEE
Confidence 345678888889999999999999999888654332 2233334455677778899999999999999988774 34
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+..+........+.+++..++.++.++.+..||+.+... ..+..............+.+++..++.++.++.+..||
T Consensus 99 ~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~ 178 (345)
T 3fm0_A 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEE
T ss_pred EEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 45554555556667777788999999999999999876211 22333333333445667777888999999999999999
Q ss_pred -CCCCEE--EEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc-----------EEEE----Ee--cCCccc
Q 003331 673 -SSGSII--WRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN-----------LLWE----YS--VGDPIT 731 (829)
Q Consensus 673 -~~g~~~--w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~-----------~~w~----~~--~~~~~~ 731 (829)
.+++.. ..+... ..+.+..+.+ .+..+..++.||.|..||...+. ..|. +. ....+.
T Consensus 179 ~~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 256 (345)
T 3fm0_A 179 EEEDDWVCCATLEGHESTVWSLAFDP--SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY 256 (345)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEE
T ss_pred ecCCCEEEEEEecCCCCceEEEEECC--CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEE
Confidence 666533 222221 2232222111 24468888999999999853221 1111 10 001111
Q ss_pred cccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeee-eccCCcccccceE--EC-CEE
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAK-LELQGDIFSSPVM--IG-GRV 807 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~--~~-~~l 807 (829)
. ......++.+++++.|+.|.+|+...+..... ........ ...+...+..... .+ +.|
T Consensus 257 ~------------v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 257 D------------IAWCQLTGALATACGDDAIRVFQEDPNSDPQQ-----PTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp E------------EEECTTTCCEEEEETTSCEEEEEECTTSCTTS-----CCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred E------------EEEecCCCEEEEEeCCCeEEEEEeCCCCCcce-----eeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 1 11223477899999999999999875421100 00000000 0111122222222 23 367
Q ss_pred EEeeeCCeEEEEecccccc
Q 003331 808 FVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 808 ~vg~~~g~l~~~d~~tg~~ 826 (829)
..++.||.|..|+..+++.
T Consensus 320 aS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 320 ASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp EEEETTSCEEEEEECC---
T ss_pred EEcCCCCcEEEEEecCCCC
Confidence 7889999999999988764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-12 Score=134.31 Aligned_cols=247 Identities=12% Similarity=0.066 Sum_probs=164.2
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEc
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDF 587 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~ 587 (829)
+..+.....+..+++++..+++++.|+.|+.||.. +++.+..+..+........+..+ +..+++++.||.|+.||.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 34444445577788888899999999999999987 55666666555444444455433 688999999999999999
Q ss_pred CCCe--EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee---------
Q 003331 588 RNYR--CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS--------- 654 (829)
Q Consensus 588 ~tg~--~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~--------- 654 (829)
.+++ .+..+..+........+.++ +..+++++.+|.+..||..+.................+..+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 9997 55555545555556666665 6789999999999999998732222223333333344555555
Q ss_pred ----cCCEEEEEeeCCeEEEEc-CCCCEEEEe----ec-CCceeecCcccccC--CCeEEEEeeCCeEEEEeCCCCcEEE
Q 003331 655 ----ANRHVICCLVDGHVVALD-SSGSIIWRC----RT-GGPIFAGPCTSFAL--PSQVLICSRNGSIYSFEQESGNLLW 722 (829)
Q Consensus 655 ----~~~~l~~~~~~g~i~~~d-~~g~~~w~~----~~-~~~~~~~~~~~~~~--~~~i~~~t~~g~l~~~d~~tG~~~w 722 (829)
++..+++++.++.|..|| .++...+.. .. ...+....+ ..+. +..++.++.||.|..||..++...+
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~-sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 245 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW-SPTVLLRSYLASVSQDRTCIIWTQDNEQGPW 245 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEE-CCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEE-CCCCCCCCeEEEEeCCCEEEEEeCCCCCccc
Confidence 578899999999999999 666544332 21 122222211 1111 3467788889999999998875433
Q ss_pred EEec------CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 723 EYSV------GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 723 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.... ...+... ....++..+++++.+|.|++|+...+
T Consensus 246 ~~~~~~~~~~~~~v~~~------------~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 246 KKTLLKEEKFPDVLWRA------------SWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEESSSSCCSSCEEEE------------EECSSSCCEEEEESSSSEEEEEEEET
T ss_pred eeeeeccccCCCcEEEE------------EEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 2221 1111111 12234788999999999999998843
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=129.37 Aligned_cols=228 Identities=13% Similarity=0.152 Sum_probs=160.7
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCC----
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCG---- 558 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~---- 558 (829)
.++.+|+++. ++.|..+|+.|++++.++...... ...++++++ .+|+.+ +++.|+.||++++++.+++..+.
T Consensus 52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p-~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP-RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE-EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC-cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 3577888775 578999999999998887543332 244555664 899998 78999999999999998887655
Q ss_pred --eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-----------Ce
Q 003331 559 --EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----------GR 623 (829)
Q Consensus 559 --~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----------g~ 623 (829)
.... ..+ .++.+|++.. ++.|..+|+++++.++++..+... ....+++ ++.+|+++.. +.
T Consensus 130 ~~~p~~-i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p-~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~ 204 (328)
T 3dsm_A 130 SGSTEQ-MVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP-TSLVMDK-YNKMWTITDGGYEGSPYGYEAPS 204 (328)
T ss_dssp TCBCCC-EEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB-CCCEECT-TSEEEEEBCCBCTTCSSCBCCCE
T ss_pred CCCcce-EEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc-cceEEcC-CCCEEEEECCCccCCccccCCce
Confidence 3322 233 4588999874 789999999999999888765433 3344554 5678888764 57
Q ss_pred EEEEEccCCCceEEEeeccCC-cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE--eec-CCceeecCccccc-C
Q 003331 624 LTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR--CRT-GGPIFAGPCTSFA-L 697 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~--~~~-~~~~~~~~~~~~~-~ 697 (829)
|+++|.++ ++......... ......++.++++.+|+... .++.+| .++++.-. ... ...... +..+ .
T Consensus 205 v~~id~~t--~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~g---i~vdp~ 277 (328)
T 3dsm_A 205 LYRIDAET--FTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYG---LTVNPN 277 (328)
T ss_dssp EEEEETTT--TEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEE---EEECTT
T ss_pred EEEEECCC--CeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEE---EEEcCC
Confidence 99999887 77766655421 12345667777899998754 899999 77775311 111 111111 2233 3
Q ss_pred CCeEEEEe-----eCCeEEEEeCCCCcEEEEEecC
Q 003331 698 PSQVLICS-----RNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 698 ~~~i~~~t-----~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
++.+|++. .++.|++||++ |+++|++..+
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G 311 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG 311 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEec
Confidence 67899986 46889999988 9999988754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-11 Score=127.37 Aligned_cols=264 Identities=9% Similarity=0.046 Sum_probs=170.6
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--eeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCC-----
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGG----- 600 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~----- 600 (829)
..+++++.++.|+.||..+++.++.+..+.. ......++++++.+|+. ..++.|+.||..+++.++.+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 3677888899999999999999988876552 12344566666677665 456889999999999988776543
Q ss_pred cccccceeecCCCEEEEEe------------cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeE
Q 003331 601 SIFGSPAIDEVHDVLYVAS------------TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t------------~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i 668 (829)
.....+.++++++.+|++. .++.|+.||..+ ++.++....... .....+.++++.++++ ++.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~--~~~i 156 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQ-ITMLAWARDGSKLYGL--GRDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSS-CCCEEECTTSSCEEEE--SSSE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEEEeCCCC-cceeEECCCCCEEEEe--CCeE
Confidence 1234556777677899886 468999999987 888777665332 2455677778878887 6889
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC--------------C----------eEEEEeCCCCcEEEE
Q 003331 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN--------------G----------SIYSFEQESGNLLWE 723 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~--------------g----------~l~~~d~~tG~~~w~ 723 (829)
+.+| .+++.............. .... .+..+|+.... + .|+.+|..+++.. .
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~-~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~ 233 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEAET-YAQP-DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M 233 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTT-BCCC-BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E
T ss_pred EEEECCCCcEeeeeeccccCCCc-eeCC-CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E
Confidence 9999 888887666543311000 0000 11223332211 1 5789999999875 3
Q ss_pred EecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce
Q 003331 724 YSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV 801 (829)
Q Consensus 724 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 801 (829)
...... ...... ...++..+|++ ++.|++||..++ +........... ....
T Consensus 234 ~~~~~~~~~~~~~~-----------~s~dg~~l~~~--~~~v~~~d~~~~-------------~~~~~~~~~~~~-~~~~ 286 (337)
T 1pby_B 234 REVRIMDVFYFSTA-----------VNPAKTRAFGA--YNVLESFDLEKN-------------ASIKRVPLPHSY-YSVN 286 (337)
T ss_dssp EEEEECSSCEEEEE-----------ECTTSSEEEEE--ESEEEEEETTTT-------------EEEEEEECSSCC-CEEE
T ss_pred eecCCCCCceeeEE-----------ECCCCCEEEEe--CCeEEEEECCCC-------------cCcceecCCCce-eeEE
Confidence 322110 000011 12236778887 689999998755 223333322221 2222
Q ss_pred E--ECCEEEEeeeCCeEEEEeccccccc
Q 003331 802 M--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 802 ~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
+ .+..||+++.++.|++||.+++++.
T Consensus 287 ~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 287 VSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp ECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred ECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 2 3557999999999999999988754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=138.53 Aligned_cols=274 Identities=11% Similarity=0.049 Sum_probs=171.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEE--cCCceeeceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC--e
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIK--LEGRIECSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--E 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~--~~~~~~~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~ 559 (829)
....|.+|+.||.|..||..+++..-... .+...+.+..+++ ++..|++++.|+.|..||.+++........+. .
T Consensus 131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 210 (435)
T 4e54_B 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI 210 (435)
T ss_dssp CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence 45678899999999999998876443333 3444445667774 56799999999999999988766544333222 1
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEEE
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+..+.+++..|++|+.+|.|+.||.. ++.++.+..+...+.+..+.+++. .++.++.++.|..||+.+.......
T Consensus 211 ~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 211 WFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp CCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence 22344566678899999999999999976 455556555554555556655444 5677888999999998862221111
Q ss_pred -eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-----eeecCcccccCCCeEEEE-------
Q 003331 639 -LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP-----IFAGPCTSFALPSQVLIC------- 704 (829)
Q Consensus 639 -~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~-----~~~~~~~~~~~~~~i~~~------- 704 (829)
....+.....+..+.+++..++.++.+|.|.+|| .+++.......... .....+........+.++
T Consensus 290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 1111222335566777888999999999999999 77766544321110 000000000111223333
Q ss_pred -----eeCCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 705 -----SRNGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 705 -----t~~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
..++.|..||..+|+.+..+..+.. +.+...+ .+++.+++.|+ ++.|++||.+++
T Consensus 370 ~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~f-----------spdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEF-----------NPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEE-----------CTTSSCEEEEC-SSEEEECCCC--
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEE-----------CCCCCEEEEEc-CCcEEEEECCcC
Confidence 2345799999999998876643221 2111111 12356666664 788999998865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=135.75 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=166.4
Q ss_pred eceEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEe--cCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003331 520 CSAAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQ--TCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 520 ~~~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~--~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
.+..+.+ ++..|++|+.||.|+.||..+++..-... .+........+.+ ++..|++++.||.|..||.+++.....
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~ 202 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF 202 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE
Confidence 3455554 44578899999999999998876543332 2333334445554 567899999999999999988765544
Q ss_pred eccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc
Q 003331 596 LPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD 672 (829)
Q Consensus 596 ~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d 672 (829)
..... ....+..+..++..+++++.+|.|..||.+ ++.+..+..+.....+..+.+++. .++.++.++.|.+||
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~---~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 203 ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD---GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS---SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEE
T ss_pred eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC---cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEe
Confidence 33322 223455567777899999999999999987 455555555444455666666554 566788899999999
Q ss_pred -CCCCEEEEe----ecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc-ccccccccccccc
Q 003331 673 -SSGSIIWRC----RTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS-AYIDEHLQLKLES 746 (829)
Q Consensus 673 -~~g~~~w~~----~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~~~~~~~~ 746 (829)
.+++..-.+ .....+.+..+.+ .+..|+.++.||.|..||..+++....+......... ..... ..
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 351 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK------AA 351 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB------CE
T ss_pred cccccccceEEEeeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE------EE
Confidence 655432211 1122333322111 2457888999999999999998876554322111000 00000 00
Q ss_pred ccCCCcEEEEE------------ccCCcEEEEEeecCccccccccccccceeeeee-ccCCcccccce-EE-CCEEEEee
Q 003331 747 CLSIDRLVCIC------------TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKL-ELQGDIFSSPV-MI-GGRVFVGC 811 (829)
Q Consensus 747 ~~~~~~~l~~~------------~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~-~~-~~~l~vg~ 811 (829)
....+..+.++ ..++.|.+||..++ +..... ......+.+.. +. ++.+++++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g-------------~~~~~l~~~~~~~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG-------------KMMCQLYDPESSGISSLNEFNPMGDTLASA 418 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC-------------CEEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC-------------cEEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence 01112233333 23456889988765 222221 11111122221 11 45555566
Q ss_pred eCCeEEEEecccccccc
Q 003331 812 RDDYIYCIALETQHLEE 828 (829)
Q Consensus 812 ~~g~l~~~d~~tg~~~~ 828 (829)
.++.|+.||+++|+.++
T Consensus 419 ~d~~i~iW~~~~gk~rK 435 (435)
T 4e54_B 419 MGYHILIWSQQEARTRK 435 (435)
T ss_dssp CSSEEEECCCC------
T ss_pred cCCcEEEEECCcCeeeC
Confidence 68999999999998653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-11 Score=133.72 Aligned_cols=206 Identities=10% Similarity=0.018 Sum_probs=141.1
Q ss_pred eeceEEeeCCcEE-EEEEeCCEEEEEEcC--CCcEEEEEe--cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE
Q 003331 519 ECSAAVLADFSQV-VVGCYKGKIYFLDYL--TGDIYWTFQ--TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v-~vg~~dg~l~~~d~~--tG~~~w~~~--~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~ 593 (829)
..+..+++++..+ ++++.|+.|..||.. +|+.+..+. ..........+.+++..|++++.++.++.|+..+++..
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence 3456778888886 778889999999998 888876654 22233345566777889999999999999999887643
Q ss_pred E----eeccCCcccccceeecC---CCEEEEEecCCeEEEEEccCCCceEEEeec-cCCcceeeeeeeecCCEEEEEeeC
Q 003331 594 Y----KLPCGGSIFGSPAIDEV---HDVLYVASTSGRLTAISVKALPFHTLWLHE-LEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 594 w----~~~~~~~~~~~~~~~~~---~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~-~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
. .+..+........+.++ +..++.++.++.|+.||+.+ ++.+..+. .......+..+. ++..++.++.+
T Consensus 185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ--CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC--TTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC--CceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 2 33333344455666765 56888899999999999987 66555422 233334566777 88899999999
Q ss_pred CeEEEEc-CCCCEEEEeecCCce-----------------------eecCcccc-cCCCeEEEEe-eCCeEEEEeC--CC
Q 003331 666 GHVVALD-SSGSIIWRCRTGGPI-----------------------FAGPCTSF-ALPSQVLICS-RNGSIYSFEQ--ES 717 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~~~~~~~-----------------------~~~~~~~~-~~~~~i~~~t-~~g~l~~~d~--~t 717 (829)
+.|.+|| .+|+.+..+.....+ .....+.. ..+..+++++ .++.|+.|+. .+
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~ 341 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ 341 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC
Confidence 9999999 899887666532100 00000111 1245677787 7899999998 55
Q ss_pred C---cEEEEEecC
Q 003331 718 G---NLLWEYSVG 727 (829)
Q Consensus 718 G---~~~w~~~~~ 727 (829)
+ +.+-.+..+
T Consensus 342 ~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 342 KGDLALKQIITFP 354 (450)
T ss_dssp TTCEEEEEEEECS
T ss_pred CCceeeccEeccC
Confidence 5 344444444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=140.50 Aligned_cols=229 Identities=8% Similarity=-0.050 Sum_probs=148.7
Q ss_pred CCeEEEEecCCCcEEEEECCCC--cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc---EEEEEecCCe
Q 003331 485 SDIYLFVGSHSHKFICADAKRS--SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD---IYWTFQTCGE 559 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~---~~w~~~~~~~ 559 (829)
++..|++|+.++.|..||..++ +....+..+.....+..+++++..+++++.|+.|+.||..+++ ....+..+..
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 4667888889999999999988 4444454455555677888888899999999999999999887 3444433444
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE---EEeecc-CCcccccceeecCCCEEEEEecCCeEEEEEccCC---
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC---VYKLPC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKAL--- 632 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~---~w~~~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~--- 632 (829)
......+.+++..+++++.|+.++.||..+++. ...+.. +........+.+++..+++++.+|.+..||..+.
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence 444556666778899999999999999998863 333433 3444555667776788999999999999998531
Q ss_pred -------------CceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE----EEEeecCC-ceeecCcc
Q 003331 633 -------------PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI----IWRCRTGG-PIFAGPCT 693 (829)
Q Consensus 633 -------------~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~----~w~~~~~~-~~~~~~~~ 693 (829)
.++.+..+ .......+..+.+++..++.++.++.|..|| .+++. +..+.... .+....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~-- 258 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLL-- 258 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEE--
T ss_pred CCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEE--
Confidence 14444444 3333345667777888999999999999999 77765 33333222 222221
Q ss_pred cccCCCeEEEEeeCCeEEEEeCCC
Q 003331 694 SFALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~~t 717 (829)
...++.+++.+.++.+..|+...
T Consensus 259 -~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 259 -WANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp -EEETTEEEEEESSSSEEEECCCC
T ss_pred -EcCCCCEEEEEcCCcEEEEEeCC
Confidence 22355555555566677887653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-11 Score=127.31 Aligned_cols=276 Identities=8% Similarity=0.010 Sum_probs=170.5
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEc-CCCe
Q 003331 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDF-RNYR 591 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~-~tg~ 591 (829)
...+..+++++..+++++.|+.|+.||..+++ ..........+ ....+.+++. .+++++.+|.|+.||. .+++
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL-LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCE-EEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCce-EEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 34566778888899999999999999998888 55444333333 4445666677 8999999999999999 8887
Q ss_pred EEEeecc--CCcccccceeecCCCEEEEEecCCeEEEEEccCCC-------ceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003331 592 CVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALP-------FHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 592 ~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~-------g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
.. .+.. +........+.+ ++.+++++.+|.+..||..+.. ++.+..+... ....+..+. .+.++++
T Consensus 92 ~~-~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~ 166 (342)
T 1yfq_A 92 FQ-ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK-NKIFTMDTN--SSRLIVG 166 (342)
T ss_dssp EE-ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSC-CCEEEEEEC--SSEEEEE
T ss_pred eE-eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeC-CceEEEEec--CCcEEEE
Confidence 63 3333 334444555666 7899999999999999976300 2223333322 222333343 4459999
Q ss_pred eeCCeEEEEc-CC-CCEEEE---eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCC------cEEEEEecCCccc
Q 003331 663 LVDGHVVALD-SS-GSIIWR---CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG------NLLWEYSVGDPIT 731 (829)
Q Consensus 663 ~~~g~i~~~d-~~-g~~~w~---~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG------~~~w~~~~~~~~~ 731 (829)
+.++.|..|| .+ +..... ......+....+.. ..+..+++++.+|.+..|+.+.+ +....+.......
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP-KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS-GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEEECC-CCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 9999999999 66 543221 11222232221111 02457888999999999998776 6666665443200
Q ss_pred cccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC-CcccccceEECCEEEEe
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ-GDIFSSPVMIGGRVFVG 810 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~vg 810 (829)
... .....+.......++.++++++.+|.|++||..++ +....+... ...+.+....+..|+.+
T Consensus 246 ~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~l~s~ 310 (342)
T 1yfq_A 246 KDT--NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------KKIKNFAKFNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp TCC--SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred ccc--ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH-------------hHhhhhhcccCCCceEecCCCCeEEEE
Confidence 000 00000000111234788999999999999998865 223333322 22222222456688889
Q ss_pred eeCCe
Q 003331 811 CRDDY 815 (829)
Q Consensus 811 ~~~g~ 815 (829)
+.||.
T Consensus 311 s~Dg~ 315 (342)
T 1yfq_A 311 TSDDT 315 (342)
T ss_dssp EECTH
T ss_pred ecCCc
Confidence 98987
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-11 Score=131.06 Aligned_cols=248 Identities=10% Similarity=0.041 Sum_probs=156.8
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc-----------EEEEEecCC------------eeeeeeeeecCC--CE
Q 003331 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGD-----------IYWTFQTCG------------EVKCQPVVDAPR--QL 572 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-----------~~w~~~~~~------------~~~~~~~~~~~~--~~ 572 (829)
.+.+..+++++..+++|+.||.|..||..+++ +...+..+. .......+.+++ ..
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 34567788888999999999999999998887 355555443 223444555554 68
Q ss_pred EEEeccCCeEEEEEcCCCeEEEe---------------------------------------e-ccCCcccccceeecCC
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYK---------------------------------------L-PCGGSIFGSPAIDEVH 612 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~---------------------------------------~-~~~~~~~~~~~~~~~~ 612 (829)
+++++.|+.|+.||..+++.... + ..+.....+..+.+++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 99999999999999887654311 1 1223334455566666
Q ss_pred CEEEEEecCCeEEEEEccCCCceEEEe--------eccCCcceeeeeeeecC-CEEEEEeeCCeEEEEc-CCCCE----E
Q 003331 613 DVLYVASTSGRLTAISVKALPFHTLWL--------HELEVPAFASLCITSAN-RHVICCLVDGHVVALD-SSGSI----I 678 (829)
Q Consensus 613 ~~l~v~t~~g~l~~~~~~~~~g~~~w~--------~~~~~~~~~s~~~~~~~-~~l~~~~~~g~i~~~d-~~g~~----~ 678 (829)
..++.+ .+|.|..||+.+ +..... .........+..+.+++ ..+++++.+|.|.+|| .+++. +
T Consensus 190 ~~l~s~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEI--TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp SEEEEE-CSSEEEEEETTE--EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CEEEEe-CCCeEEEEECCC--CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 777777 799999999884 333332 22223334566677776 7999999999999999 77765 3
Q ss_pred EEeecCC-------------ceeecCcccccCCC-eEEEEeeCCeEEEEeCCC-CcEEEEEecCCccccccc---ccccc
Q 003331 679 WRCRTGG-------------PIFAGPCTSFALPS-QVLICSRNGSIYSFEQES-GNLLWEYSVGDPITASAY---IDEHL 740 (829)
Q Consensus 679 w~~~~~~-------------~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~---~~~~~ 740 (829)
..+.... .+.... ...++ .+..++. |.|..||..+ ++.+..+..+..+..... ....+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 267 KLFEEPEDPSNRSFFSEIISSISDVK---FSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp EEECCC-----CCHHHHHTTCEEEEE---ECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eEeccCCCccccccccccCceEEEEE---ECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 4443322 222221 22244 5666666 9999999987 777666654433221000 00000
Q ss_pred -ccccccccCCCcEEEEEccCCcEEEEEeecCc
Q 003331 741 -QLKLESCLSIDRLVCICTSSGSIHILRVNLDV 772 (829)
Q Consensus 741 -~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~ 772 (829)
.........++.++++++.||.|++||..++.
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 00001123447889999999999999998763
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-10 Score=138.28 Aligned_cols=193 Identities=15% Similarity=0.115 Sum_probs=143.3
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.++..|.+|+.||.|+.||..+++....+. +...+.+..+++ +.++++++.|+.|..||..+++.+..+...+.+
T Consensus 25 fspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V- 101 (902)
T 2oaj_A 25 FDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKI- 101 (902)
T ss_dssp EETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCE-
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCE-
Confidence 34467789999999999999998887665433 223344666777 668999999999999999999998887655444
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEE-Eee----------ccCCcccccceeecC-CCEEEEEecCCeEEEEEc
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV-YKL----------PCGGSIFGSPAIDEV-HDVLYVASTSGRLTAISV 629 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~-w~~----------~~~~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~ 629 (829)
....+.+++..+++|+.||.|+.||..++++. ++. ..+.....+..+.++ .+.+++++.+|.+ .||+
T Consensus 102 ~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~ 180 (902)
T 2oaj_A 102 TSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSL 180 (902)
T ss_dssp EEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEET
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEC
Confidence 44556778889999999999999999998864 111 112223444555553 3578889999999 9999
Q ss_pred cCCCceEEEeeccC------------------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE
Q 003331 630 KALPFHTLWLHELE------------------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680 (829)
Q Consensus 630 ~~~~g~~~w~~~~~------------------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~ 680 (829)
++ ++.+..+... .....+..+.+++..++.++.|+.|..|| .+|+.+..
T Consensus 181 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 181 VE--NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp TT--TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEE
T ss_pred CC--CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Confidence 87 7766555432 12345667778888999999999999999 88887643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=138.73 Aligned_cols=233 Identities=12% Similarity=0.015 Sum_probs=146.5
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCC--cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe---EE
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTG--DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR---CV 593 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~---~~ 593 (829)
..+..+++++..+++++.|+.|+.||..++ +.+..+..+........+.+++..|++++.|+.++.||..+++ ..
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee
Confidence 456788888889999999999999999888 5555555444445555677777889999999999999999887 44
Q ss_pred EeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceE---EEeecc-CCcceeeeeeeecCCEEEEEeeCCeEE
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHT---LWLHEL-EVPAFASLCITSANRHVICCLVDGHVV 669 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~---~w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~ 669 (829)
..+..+........+.+++..+++++.++.+..||.++ ++. ...... ......+..+.+++..+++++.++.+.
T Consensus 94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~ 171 (377)
T 3dwl_C 94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ--ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY 171 (377)
T ss_dssp EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC--cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence 44444444455566666678899999999999999887 542 223332 333345667777888999999999999
Q ss_pred EEc-CCC------------------CEEEEeecCCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcE----EEEEe
Q 003331 670 ALD-SSG------------------SIIWRCRTGGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNL----LWEYS 725 (829)
Q Consensus 670 ~~d-~~g------------------~~~w~~~~~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~----~w~~~ 725 (829)
.|| .++ +.+..+.....+.... .. .+..++.++.||.|+.||..+++. +..+.
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 248 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVG---FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK 248 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEE---ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE
T ss_pred EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEE---ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec
Confidence 999 532 2222221112222221 22 234688889999999999999876 43443
Q ss_pred cCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 726 VGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 726 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
.+.. +....+. .++.++++++.+ .+.+|+..
T Consensus 249 ~~~~~v~~~~~s------------~~~~~l~~~~~~-~~~~~~~~ 280 (377)
T 3dwl_C 249 LSQLPLRSLLWA------------NESAIVAAGYNY-SPILLQGN 280 (377)
T ss_dssp CSSSCEEEEEEE------------ETTEEEEEESSS-SEEEECCC
T ss_pred CCCCceEEEEEc------------CCCCEEEEEcCC-cEEEEEeC
Confidence 3322 2221111 125666666554 56677665
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-12 Score=135.21 Aligned_cols=269 Identities=10% Similarity=0.018 Sum_probs=166.2
Q ss_pred EEEeCCEEEEEEcCCC-cE---EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCC-------eEEEeeccCC
Q 003331 533 VGCYKGKIYFLDYLTG-DI---YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNY-------RCVYKLPCGG 600 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG-~~---~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg-------~~~w~~~~~~ 600 (829)
.++.+|.|+.||..+. +. ...+..+........+.+ ++..+++|+.||.|..||..++ +.+..+..+.
T Consensus 52 ~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 52 EASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCS
T ss_pred EEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCC
Confidence 3567899999997543 32 122223334445556666 6789999999999999999988 4445555455
Q ss_pred cccccceeecCC-CEEEEEecCCeEEEEEccCCCceEEEee--ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC
Q 003331 601 SIFGSPAIDEVH-DVLYVASTSGRLTAISVKALPFHTLWLH--ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 601 ~~~~~~~~~~~~-~~l~v~t~~g~l~~~~~~~~~g~~~w~~--~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~ 676 (829)
.......+.+++ ..++.++.+|.|..||+.+ ++.+..+ ........+..+.+++..+++++.++.|.+|| .+++
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 209 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT 209 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred CeEEEEEECcCCCCEEEEEcCCCEEEEEECCC--CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc
Confidence 555556666655 5888999999999999998 8877776 44444456677777888999999999999999 8888
Q ss_pred EEEEe-ecCCceeecCcccccCCCe-EEEE---eeCCeEEEEeCCCCcE-EEEEe--cCCcccccccccccccccccccc
Q 003331 677 IIWRC-RTGGPIFAGPCTSFALPSQ-VLIC---SRNGSIYSFEQESGNL-LWEYS--VGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 677 ~~w~~-~~~~~~~~~~~~~~~~~~~-i~~~---t~~g~l~~~d~~tG~~-~w~~~--~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
.+..+ ...... ....+....++. ++++ +.++.|..||..+++. ..... ....+.... ..
T Consensus 210 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s----------- 276 (402)
T 2aq5_A 210 VVAEKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF-FD----------- 276 (402)
T ss_dssp EEEEEECSSCSS-SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE-EE-----------
T ss_pred eeeeeccCCCCC-cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE-Ec-----------
Confidence 87776 222111 001111223455 4455 4789999999988764 22222 222222211 11
Q ss_pred CCCcEEE-EEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEecccccc
Q 003331 749 SIDRLVC-ICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 749 ~~~~~l~-~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
.++..++ +++.||.|++||..++... ...+..+...+ .+.+..+..+..++.+.++.+..|++.++++
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~---------~~~l~~~~~~~-~v~~~~~sp~~~~~~s~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPF---------LHYLSMFSSKE-SQRGMGYMPKRGLEVNKCEIARFYKLHERKC 345 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTC---------EEEEEEECCSS-CCSEEEECCGGGSCGGGTEEEEEEEEETTEE
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcc---------eEeecccccCC-cccceEEecccccceecceeEEEEEcCCCcE
Confidence 2266665 4667999999999865210 01222222112 2222222222222334566778888777654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-11 Score=128.02 Aligned_cols=264 Identities=8% Similarity=0.012 Sum_probs=166.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEE---------cCCCcEEEEEe
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLD---------YLTGDIYWTFQ 555 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d---------~~tG~~~w~~~ 555 (829)
++..++.|+.||.|+.||..+|+.+..+.... ..+..+.++ +++++.|+.+..|+ ..+++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~--v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPN--PRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEEC--CCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecCC--ceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 45678899999999999999999887765221 112223222 66666666666664 44666555444
Q ss_pred cC-Ceeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 556 TC-GEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 556 ~~-~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.. ........+.+ ++..+++++.|+.++.||..+++........ ........+.+++..+++|+.+|.|..||..+
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 32 12233344555 6678888999999999999999986655332 22355566777778888899999999999987
Q ss_pred CCceEE-Eeecc-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec---CCceeecCcccccCC-CeEEEE
Q 003331 632 LPFHTL-WLHEL-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT---GGPIFAGPCTSFALP-SQVLIC 704 (829)
Q Consensus 632 ~~g~~~-w~~~~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~---~~~~~~~~~~~~~~~-~~i~~~ 704 (829)
++.. ..+.. +.....+..+.+++..++.++ ++.|..|| .+++....+.. ........++....+ ..+.++
T Consensus 202 --~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 202 --PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp --TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred --CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 6654 44444 344456677777888888888 56999999 77765433321 000011011222333 456666
Q ss_pred ee-CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 705 SR-NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 705 t~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+. ++.+..|+..++...|... ++....+... ......+++++.+|.+.++-.
T Consensus 279 s~~d~~i~v~~~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKTKNWTKD---EESALCLQSD---------TADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp ETTTTEEEEEEECTTTCSEEEE---EEEECCC-------------CCCCEEEEEEETTEEEEEEE
T ss_pred cCCCCcEEEEEEcccccceEec---CceeEecCcc---------ccccceeEEEecCCceEEEEe
Confidence 66 8999999988877778751 1111111110 012557788888888877643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-11 Score=125.08 Aligned_cols=199 Identities=10% Similarity=-0.009 Sum_probs=131.9
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc----EEEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcC
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD----IYWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~ 588 (829)
+.....+..+++++..+++++.|+.|+.||..++. ....+..+........+.+ ++..+++++.|+.|+.||..
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 33344567778888899999999999999998874 3344444444444445554 36789999999999999998
Q ss_pred CC---------eEEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeecc-------------CC
Q 003331 589 NY---------RCVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHEL-------------EV 644 (829)
Q Consensus 589 tg---------~~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~-------------~~ 644 (829)
++ +.+..+..+........+.++ +..+++++.+|.|..||+.+ ++.+..+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 167 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE--PSDLRSWTLTSEMKVLSIPPANHL 167 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS--TTCTTCCEEEEEEESCSCCCSSCS
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC--hHHhccccccccccccccccCCcc
Confidence 87 556666555555556666666 67899999999999999886 443222111 11
Q ss_pred cceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEE--EEeecC-CceeecCcccccCC-----CeEEEEeeCCeEEE
Q 003331 645 PAFASLCITSA---NRHVICCLVDGHVVALD-SSGSII--WRCRTG-GPIFAGPCTSFALP-----SQVLICSRNGSIYS 712 (829)
Q Consensus 645 ~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~--w~~~~~-~~~~~~~~~~~~~~-----~~i~~~t~~g~l~~ 712 (829)
.......+.++ +..+++++.++.+..++ .+++.. ..+... ..+.... ...+ ..++.++.||.|..
T Consensus 168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~---~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS---WAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE---ECCCSSCSSEEEEEEETTSCEEE
T ss_pred cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE---ECCCCCCcceEEEEEcCCCeEEE
Confidence 11223334443 77888888888886666 666652 232221 2232222 2223 36888899999999
Q ss_pred EeCCCC
Q 003331 713 FEQESG 718 (829)
Q Consensus 713 ~d~~tG 718 (829)
||..++
T Consensus 245 wd~~~~ 250 (351)
T 3f3f_A 245 FKITEK 250 (351)
T ss_dssp EEEEEC
T ss_pred EeCCCC
Confidence 998775
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-10 Score=119.79 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=169.9
Q ss_pred eEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeE-EEeecc
Q 003331 522 AAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRC-VYKLPC 598 (829)
Q Consensus 522 ~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~-~w~~~~ 598 (829)
+++..+.+.+|+.+ .++.|+.||..+|+.+.....+.... ...+.+++..+|+++. ++.|+.||..+++. ......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 34445556666654 57899999999999988877655444 6667777777887765 78999999999987 655555
Q ss_pred CCcccccceeecCCCEEEEEecCC---eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-Ce-EEEEc-
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTSG---RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GH-VVALD- 672 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~g---~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~-i~~~d- 672 (829)
+......+.+++++..+|+...++ .|..||.++ ++.+........ .....+.++++.+|++..+ +. +..|+
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK--NKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT--TEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCC--CCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEE
Confidence 544444367777778888555443 899999987 777766554332 2566777777778877654 67 88887
Q ss_pred -CCCCEEEE----eecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCCCCcE---EEEEecCCcccccccccccccc
Q 003331 673 -SSGSIIWR----CRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQESGNL---LWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 673 -~~g~~~w~----~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~tG~~---~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
.+|.+... ...+..... +....++ .+|+++ .++.|+.||..+++. +..+..+....... +
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~-~------ 228 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFN---ITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIV-V------ 228 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEE---EEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEE-E------
T ss_pred CCCCcEeecCCccccCCCCccc---eEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEE-E------
Confidence 34444221 111111111 1223344 477776 478899999999998 66665443222111 1
Q ss_pred ccccccCCCcEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeec----cCCc-ccc--cceE--ECCEEEEeee
Q 003331 743 KLESCLSIDRLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGD-IFS--SPVM--IGGRVFVGCR 812 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~--s~~~--~~~~l~vg~~ 812 (829)
.+++.++|+++. ++.|++||..++... ....+. .... ... ...+ ++..||+++.
T Consensus 229 -----spdg~~l~v~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 292 (331)
T 3u4y_A 229 -----SRDGSTVYVLTESTVDVFNFNQLSGTLS-----------FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISAN 292 (331)
T ss_dssp -----CTTSSEEEEECSSEEEEEEEETTTTEEE-----------EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred -----CCCCCEEEEEEcCCCEEEEEECCCCcee-----------eecccccccccCCCCcccccceEECCCCCEEEEecC
Confidence 223677877764 667999998765211 011111 1111 111 1122 3567888776
Q ss_pred -CCeEEEEecccccc
Q 003331 813 -DDYIYCIALETQHL 826 (829)
Q Consensus 813 -~g~l~~~d~~tg~~ 826 (829)
++.+..||..+..+
T Consensus 293 ~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 293 ISRELKVFTISGKVV 307 (331)
T ss_dssp TTTEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCcc
Confidence 45899999876553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-10 Score=120.62 Aligned_cols=269 Identities=10% Similarity=0.069 Sum_probs=177.5
Q ss_pred CCeEEEEecC-----CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003331 485 SDIYLFVGSH-----SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~-----~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+.+++|+... ++.|+.+|..|++.+.+++.+... ...++++++.+|+.+. ++.|..||..|++
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 5778999876 578999999999999998877665 3788999999999863 5679999999999
Q ss_pred EEEEEecCC-------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003331 550 IYWTFQTCG-------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 550 ~~w~~~~~~-------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
++.++..+. .-.....+++++..+|++.. ++.|..+|.++++.+.++...+.. .........++..+.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~---~~~P~g~~~~~~~~~ 197 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY---HIFPTAPDTFFMHCR 197 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE---EEEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc---eeecCCCceeEEECC
Confidence 998876643 11223456778889999864 578999999999999888765431 112222355667777
Q ss_pred CCeEEEEEccCCCceEEEeec----c-CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--E--EEe-ec----CC
Q 003331 621 SGRLTAISVKALPFHTLWLHE----L-EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--I--WRC-RT----GG 685 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~----~-~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~--w~~-~~----~~ 685 (829)
+|.+..++..+ .++..-... . ..+.+..+.+...++.+++.+.+|.++++| .++.. . |.. .. .+
T Consensus 198 DG~~~~v~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 198 DGSLAKVAFGT-EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp TSCEEEEECCS-SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEECCC-CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 88888887754 133321111 1 122333344444466766677789999999 55432 2 221 00 00
Q ss_pred c-eee-cCcccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003331 686 P-IFA-GPCTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 686 ~-~~~-~~~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
- .-. .+.-.....+.+|+..+ .+.|..+|.+|++.+-++..+.......+..+ +.
T Consensus 277 ~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D------------~~~ 344 (386)
T 3sjl_D 277 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQD------------EKP 344 (386)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSS------------SSC
T ss_pred ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCC------------CCe
Confidence 0 000 01111224678999864 24799999999999988777654433322221 43
Q ss_pred EEEEEcc-CCcEEEEEeecC
Q 003331 753 LVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~~-~G~l~~~d~~~~ 771 (829)
++|+.+. ++.|.++|..++
T Consensus 345 ~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 345 LLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEcCCCCeEEEEECCCC
Confidence 6777654 788999999876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-11 Score=124.58 Aligned_cols=293 Identities=10% Similarity=0.041 Sum_probs=168.0
Q ss_pred CCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE-EEeccCCeE
Q 003331 504 KRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI-WCGSHDHNL 582 (829)
Q Consensus 504 ~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i-~~gs~~g~l 582 (829)
.+.+.+.....+.....+..+++++..+.+|+.+ ++..||..+++.......++ +... .+....+.+ ++++.++.|
T Consensus 7 ~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRH-LSKV-RMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp ------------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECSC-CCEE-EECTTSSEEEEECSSTTEE
T ss_pred cccCCccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecCC-eEEE-EEcCCCCEEEEEECCccEE
Confidence 3455544444444445578888998888888755 58899999988877655443 2222 222334444 667888999
Q ss_pred EEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-eEEEeeccCCcceeeeeeeecCCEEEE
Q 003331 583 YALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF-HTLWLHELEVPAFASLCITSANRHVIC 661 (829)
Q Consensus 583 ~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g-~~~w~~~~~~~~~~s~~~~~~~~~l~~ 661 (829)
..||..+|+++..+.....+ ....+.. +.++++. ++.++.||..+ + +.+..+.. ......+.. ..+.+
T Consensus 84 ~iWd~~~~~~~~~~~~~~~v-~~v~~~~--~~~~~~~-~~~i~i~d~~~--~~~~~~~~~~---~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 84 HIWDDVKKQDVSRIKVDAPV-KDLFLSR--EFIVVSY-GDVISVFKFGN--PWKRITDDIR---FGGVCEFSN--GLLVY 152 (355)
T ss_dssp EEEETTTTEEEEEEECSSCE-EEEEECS--SEEEEEE-TTEEEEEESST--TCCBSSCCEE---EEEEEEEET--TEEEE
T ss_pred EEEECCCCcEEEEEECCCce-EEEEEcC--CEEEEEE-cCEEEEEECCC--CceeeEEecc---CCceEEEEc--cEEEE
Confidence 99999999998887755433 2333433 5666654 67899999887 5 44443332 111222222 55655
Q ss_pred --EeeCCeEEEEc-CCCCE----------------EEEeecC-CceeecCccccc-CCCeEEEEeeCCe-EEEEeCCCCc
Q 003331 662 --CLVDGHVVALD-SSGSI----------------IWRCRTG-GPIFAGPCTSFA-LPSQVLICSRNGS-IYSFEQESGN 719 (829)
Q Consensus 662 --~~~~g~i~~~d-~~g~~----------------~w~~~~~-~~~~~~~~~~~~-~~~~i~~~t~~g~-l~~~d~~tG~ 719 (829)
|+.+|.|..|| .+++. +..+... ..+.... .. .+..+..++.||. |..||..+|+
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~---~s~~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR---LNRKSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE---ECTTSSEEEEEETTCSEEEEEETTTCC
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE---ECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 46789999999 66541 2222221 2222221 22 2346788899998 9999999999
Q ss_pred EEEEEe---cCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccc-------ccceeeee
Q 003331 720 LLWEYS---VGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKD-------HMVQEFAK 789 (829)
Q Consensus 720 ~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~ 789 (829)
.+..+. ....+....+. +++.++++++.||.|.+||...+.......... ........
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s------------~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWS------------TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp EEEEEECTTCCSCEEEEEEC------------TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred EEEEEEcCCCCCcEEEEEEC------------CCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 988877 33333332222 237899999999999999987653221100000 00000011
Q ss_pred eccCCcc---cccceE--ECCEEEEeeeCCeEEEEeccccc
Q 003331 790 LELQGDI---FSSPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 790 ~~~~~~~---~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
+.++... ...... ++..|.+++.||.++.|+...++
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1111110 011111 34588999999999999876644
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-11 Score=125.15 Aligned_cols=252 Identities=10% Similarity=0.009 Sum_probs=162.1
Q ss_pred ecCCCcEEEEECCCCcEEEEEE-------cCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 492 GSHSHKFICADAKRSSVLWEIK-------LEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 492 gs~~g~l~~~d~~tg~~~w~~~-------~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
|+.++.|..+|+.|+++..... ++.. .....+ +++.+|+.+. ++.|..+|++|++++.++........
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~-~~~i~~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~- 88 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDV-AQSMVI--RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRY- 88 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSC-EEEEEE--ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEE-
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCcc-ceEEEE--ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcE-
Confidence 4557899999999998764321 1111 112223 4568888876 57899999999999988864433332
Q ss_pred eeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC------cccccceeecCCCEEEEEec--CCeEEEEEccCCCc
Q 003331 564 PVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG------SIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPF 634 (829)
Q Consensus 564 ~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~------~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g 634 (829)
.+++++ +.+|++. .++.|+.+|++++++.+.+..+. .. ..++++ ++.+|++.. ++.|.++|+++ +
T Consensus 89 i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p-~~i~~~--~~~lyv~~~~~~~~v~viD~~t--~ 162 (328)
T 3dsm_A 89 IHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST-EQMVQY--GKYVYVNCWSYQNRILKIDTET--D 162 (328)
T ss_dssp EEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC-CCEEEE--TTEEEEEECTTCCEEEEEETTT--T
T ss_pred EEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc-ceEEEE--CCEEEEEcCCCCCEEEEEECCC--C
Confidence 334333 5899987 78999999999999998877654 22 233443 589999974 78899999988 8
Q ss_pred eEEEeeccCCcceeeeeeeecCCEEEEEeeC-----------CeEEEEc-CCCCEEEEeecCC--ceeecCccccc-CCC
Q 003331 635 HTLWLHELEVPAFASLCITSANRHVICCLVD-----------GHVVALD-SSGSIIWRCRTGG--PIFAGPCTSFA-LPS 699 (829)
Q Consensus 635 ~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-----------g~i~~~d-~~g~~~w~~~~~~--~~~~~~~~~~~-~~~ 699 (829)
+.++........ ....+. .++.+|+++.. +.|+++| .++++........ .... +... .++
T Consensus 163 ~~~~~i~~g~~p-~~i~~~-~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~---la~~~d~~ 237 (328)
T 3dsm_A 163 KVVDELTIGIQP-TSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE---VQLNGTRD 237 (328)
T ss_dssp EEEEEEECSSCB-CCCEEC-TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE---EEECTTSC
T ss_pred eEEEEEEcCCCc-cceEEc-CCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee---EEEecCCC
Confidence 888877654322 233443 35678887653 6899999 8888776665421 1111 1222 256
Q ss_pred eEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc-----cCCcEEEEEee
Q 003331 700 QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-----SSGSIHILRVN 769 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~G~l~~~d~~ 769 (829)
.+|+... .|+.+|.+++++.-....... ...|. .....+.++.+|++. .++.|++||.+
T Consensus 238 ~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~--------gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 238 TLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYY--------GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEE--------EEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEEcc--EEEEEECCCCceeeeeeecCC-CCceE--------EEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 7888754 899999999886311001100 00010 001112367788875 57789999876
|
| >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-13 Score=111.95 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=61.2
Q ss_pred cccccHHHHHHHHHHhcccC-cceeccCCCccccCCChHHHHHHHHHc----C---CcchhhhcCCCHHHHHHHHHhh
Q 003331 284 ETKASDLLQVIRKAFGHALM-VEEVLHHDNFFTMGGNSIAAAHVAHNL----G---IDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l----~---~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+.+++|+.|+++|+++|+ .+.|++++|||++|||||+|++|+.+| + +++..+|++||+..||.+|...
T Consensus 20 t~~~~~~E~~La~iW~~vL~~~~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~~l~~~ 97 (110)
T 2cq8_A 20 TEAELVTAEAVRSVWQRILPKVLEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRK 97 (110)
T ss_dssp CTTHHHHHHHHHHHHHHHCSSCSCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhCCCCCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 34556799999999999999 899999999999999999999998654 3 5566999999999999999754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4e-10 Score=126.17 Aligned_cols=273 Identities=12% Similarity=0.093 Sum_probs=181.2
Q ss_pred eeCCCeEEEEecCCCcEEEEEC--CCCcEEEEEEcCCceeeceEEee----CCcEEEEEEe-CCEEEEEEcCCCcEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADA--KRSSVLWEIKLEGRIECSAAVLA----DFSQVVVGCY-KGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~--~tg~~~w~~~~~~~~~~~~~~~~----~~~~v~vg~~-dg~l~~~d~~tG~~~w~~ 554 (829)
++.++.+||+++.++.|..||. .+++++.++..+... ....+++ +++.+|++++ ++.|..||..+++++.++
T Consensus 186 ~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p-~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 186 MSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp ECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCc-ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 4557789999999999999999 899988877765443 4667888 8999999985 799999999999999887
Q ss_pred ecCCe-----------eeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEE--eeccCCcccccceeecCCCEEEEEec
Q 003331 555 QTCGE-----------VKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVY--KLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 555 ~~~~~-----------~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w--~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
...+. -.....++.++..+++ ...++.|..||..+++.+. .+.. +.......+++++.++|++..
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~-~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA-APFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp ECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC-CSSCCCEEECTTSCEEEEEEG
T ss_pred cccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc-CcCccCceECCCCCEEEEEec
Confidence 65321 1223334444455444 5667899999998865433 3332 223334567776777887764
Q ss_pred -CCeEEEEEccCCCceEEEeeccCC-cce-eeee-eeecCCEEEEEee--CCeEEEEc-CC-------CCEEEEeecCCc
Q 003331 621 -SGRLTAISVKALPFHTLWLHELEV-PAF-ASLC-ITSANRHVICCLV--DGHVVALD-SS-------GSIIWRCRTGGP 686 (829)
Q Consensus 621 -~g~l~~~~~~~~~g~~~w~~~~~~-~~~-~s~~-~~~~~~~l~~~~~--~g~i~~~d-~~-------g~~~w~~~~~~~ 686 (829)
++.|.+||.++ |+.+....... +.. .... ..++++.+|+.+. ++.|.+|| .+ ++.+-++...+.
T Consensus 344 ~~~~v~v~D~~t--g~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~ 421 (543)
T 1nir_A 344 NSNKVAVIDSKD--RRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG 421 (543)
T ss_dssp GGTEEEEEETTT--TEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS
T ss_pred CCCeEEEEECCC--CeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC
Confidence 78899999988 88877766432 111 1112 2345577887653 68999999 66 677666665331
Q ss_pred -eeecCcccccCCCeEEEEe-------eCCeEEEEeCCCCcEEEE-EecC--------CccccccccccccccccccccC
Q 003331 687 -IFAGPCTSFALPSQVLICS-------RNGSIYSFEQESGNLLWE-YSVG--------DPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~~~t-------~~g~l~~~d~~tG~~~w~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
.....+ .-....||+++ .++.|..||.++++...+ +... ......+. ...
T Consensus 422 ~~~~v~~--~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~ 488 (543)
T 1nir_A 422 GSLFIKT--HPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE-----------YNK 488 (543)
T ss_dssp CCCCEEC--CTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE-----------ECS
T ss_pred CceEEEc--CCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc-----------CCC
Confidence 111111 11345799887 267899999999987633 2211 11111111 123
Q ss_pred CCcEEEEEc-----cCCcEEEEEeecC
Q 003331 750 IDRLVCICT-----SSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~-----~~G~l~~~d~~~~ 771 (829)
++..+|++. .++.|.+||.+++
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 488899874 3689999999876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-09 Score=118.76 Aligned_cols=322 Identities=11% Similarity=0.083 Sum_probs=199.3
Q ss_pred eEEEEe-cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeeee
Q 003331 487 IYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 487 ~~l~ig-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~~ 563 (829)
+.+|+. ..++.|..+|..|++++.++..+.... ...++++++++|+++.++.|+.||.. +++++.++..+.... .
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-S 244 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-E
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-e
Confidence 344443 457899999999999999888776544 57788999999999999999999985 899988887765543 3
Q ss_pred eeee----cCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcc-----------cccceeecCCCEEEEE-ecCCeEEE
Q 003331 564 PVVD----APRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSI-----------FGSPAIDEVHDVLYVA-STSGRLTA 626 (829)
Q Consensus 564 ~~~~----~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~-----------~~~~~~~~~~~~l~v~-t~~g~l~~ 626 (829)
..++ ++++.+|++.+ .+.+..+|..+.+++..+...+.. ...+..+.++..+++. ...|.|..
T Consensus 245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~ 324 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 324 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence 3455 36788988765 488999999999999887654311 1122223323343333 34577888
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEEeec-CCcee--ecCcccccCCCeE
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWRCRT-GGPIF--AGPCTSFALPSQV 701 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~~~~-~~~~~--~~~~~~~~~~~~i 701 (829)
+|..+............ .......+.+++.+++++. .++.|.++| .+++++..... +.... ..........+.+
T Consensus 325 vd~~~~~~~~v~~i~~~-~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v 403 (567)
T 1qks_A 325 VDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 403 (567)
T ss_dssp EETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred EecCCCccceeeeeecc-ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence 88665211122222221 2223456777788888876 468899999 89998888776 32111 0111111124678
Q ss_pred EEEee--CCeEEEEeCCCC-------cEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-------CCcEEE
Q 003331 702 LICSR--NGSIYSFEQESG-------NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-------SGSIHI 765 (829)
Q Consensus 702 ~~~t~--~g~l~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~G~l~~ 765 (829)
|+.++ ++.|..+|..++ +.+.+......- +.++. ..+++.++|+.+. ...|.+
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~---------~~p~~~~l~v~~~~~~~~~~~~~v~v 472 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIK---------THPNSQYLYVDATLNPEAEISGSVAV 472 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEE---------CCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEE---------eCCCCCeEEEecCCCCCcccCceEEE
Confidence 88764 578999998873 344444443211 11110 1233778999874 358999
Q ss_pred EEeecCcc-ccccccccccceeeeee---cc--CCcccccceE--ECCEEEEeee-----CCeEEEEeccccccc
Q 003331 766 LRVNLDVT-GKENQSKDHMVQEFAKL---EL--QGDIFSSPVM--IGGRVFVGCR-----DDYIYCIALETQHLE 827 (829)
Q Consensus 766 ~d~~~~~~-~~~~~~~~~~~~~~~~~---~~--~~~~~~s~~~--~~~~l~vg~~-----~g~l~~~d~~tg~~~ 827 (829)
||.++... +.. ...+.+... .+ .+.....+.+ ++..+|+..+ ++.|..+|.+|++++
T Consensus 473 ~d~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~ 542 (567)
T 1qks_A 473 FDIKAMTGDGSD-----PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 542 (567)
T ss_dssp EEGGGCCCSSSC-----CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred EECCcccccccC-----CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence 99875410 000 000111000 01 1222222333 4679999865 689999999998864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-11 Score=125.72 Aligned_cols=234 Identities=6% Similarity=-0.029 Sum_probs=157.6
Q ss_pred CCCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCc--EEEEEecC
Q 003331 484 DSDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGD--IYWTFQTC 557 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~ 557 (829)
.++..|++|+.+|.|..||.. +++....+..+.....+..++.+ +..+++++.|+.|+.||..+++ .+..+..+
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 100 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVH 100 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCC
Confidence 356789999999999999987 55555556555555556667655 7899999999999999999997 55555544
Q ss_pred CeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeec-------------CCCEEEEEec
Q 003331 558 GEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDE-------------VHDVLYVAST 620 (829)
Q Consensus 558 ~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~-------------~~~~l~v~t~ 620 (829)
........+.++ +..+++++.++.++.||..+++. ......+......+.+.+ ++..+++++.
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 180 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC
Confidence 444455556655 67899999999999999988732 223333333334444444 4688999999
Q ss_pred CCeEEEEEccCCCc--eEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEee------cCCcee
Q 003331 621 SGRLTAISVKALPF--HTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCR------TGGPIF 688 (829)
Q Consensus 621 ~g~l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~------~~~~~~ 688 (829)
+|.|+.||..+... ........+.....+..+.++ +..+++++.+|.|.+|| .++...+... ....+.
T Consensus 181 dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 260 (379)
T 3jrp_A 181 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLW 260 (379)
T ss_dssp TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEE
T ss_pred CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEE
Confidence 99999999886211 122233333344456677777 67888899999999999 7664222211 112222
Q ss_pred ecCcccccCCCeEEEEeeCCeEEEEeCCCCc
Q 003331 689 AGPCTSFALPSQVLICSRNGSIYSFEQESGN 719 (829)
Q Consensus 689 ~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~ 719 (829)
...+ ...+..+++++.||.|+.|+..++.
T Consensus 261 ~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 261 RASW--SLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEE--CSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEE--cCCCCEEEEecCCCcEEEEeCCCCC
Confidence 2111 1123468888899999999987543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=121.81 Aligned_cols=190 Identities=7% Similarity=-0.100 Sum_probs=130.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCc----EEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCC---------
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSS----VLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTG--------- 548 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG--------- 548 (829)
.++..|++|+.||.|..||..++. ....+..+.....+..+.+ ++..+++++.|+.|..||..++
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 100 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRW 100 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSE
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCc
Confidence 356789999999999999998774 3333444555455667766 5789999999999999999887
Q ss_pred cEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEEEeecc-------------CCcccccceeecC--
Q 003331 549 DIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCVYKLPC-------------GGSIFGSPAIDEV-- 611 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~w~~~~-------------~~~~~~~~~~~~~-- 611 (829)
+.+..+..+........+.++ +..+++++.|+.|+.||..+++.+..+.. .........+.++
T Consensus 101 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 180 (351)
T 3f3f_A 101 NKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF 180 (351)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS
T ss_pred ceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC
Confidence 445555544444455556665 77899999999999999988765432221 1111222223332
Q ss_pred -CCEEEEEecCCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecC----CEEEEEeeCCeEEEEc-CCC
Q 003331 612 -HDVLYVASTSGRLTAISVKALPFHT--LWLHELEVPAFASLCITSAN----RHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 612 -~~~l~v~t~~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~----~~l~~~~~~g~i~~~d-~~g 675 (829)
+..+++++.++.+..++... ++. +...........+..+.+++ ..++.++.+|.|..|| .++
T Consensus 181 ~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 181 SPEKLAVSALEQAIIYQRGKD--GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp SCCEEEEEETTEEEEEEECTT--SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred CCcEEEEecCCCcEEEEccCC--CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 57888999998887777665 443 33343334444566676666 6788899999999999 654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-10 Score=133.30 Aligned_cols=327 Identities=13% Similarity=0.055 Sum_probs=194.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec---------
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--------- 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--------- 556 (829)
+..|+.++.|+.|..||..+++.+..+..+.. ..+..+++++..+++|+.||.|+.||..+++.. .+..
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~-V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~ 146 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFF 146 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECSSC-EEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTC
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCCCC-EEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceeccccccccc
Confidence 45799999999999999999998877764443 456778889999999999999999999988764 2211
Q ss_pred ---CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccC------------------CcccccceeecCCCE
Q 003331 557 ---CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------GSIFGSPAIDEVHDV 614 (829)
Q Consensus 557 ---~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~ 614 (829)
+.....+..+.+. .+.+++|+.++.+ .||.++++++..+..+ .....+..+.+++..
T Consensus 147 ~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 147 PAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp SSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred cccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 1122233445543 3678899999999 9999999988776543 123445567777788
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeecc-----C-------------Ccceeeeeeee----cC-CEEEEEeeC-----C
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHEL-----E-------------VPAFASLCITS----AN-RHVICCLVD-----G 666 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~-----~-------------~~~~~s~~~~~----~~-~~l~~~~~~-----g 666 (829)
+..++.||.|..||.++ |+.+..... . .....+..... ++ ..++.|+.+ .
T Consensus 226 lasgs~Dg~i~lWd~~~--g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~ 303 (902)
T 2oaj_A 226 IITIHEDNSLVFWDANS--GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQ 303 (902)
T ss_dssp EEEEETTCCEEEEETTT--CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCC
T ss_pred EEEEECCCeEEEEECCC--CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCc
Confidence 99999999999999987 776543111 1 11122333332 12 234445443 2
Q ss_pred eEEEEc-C-C-----------------C--CEEEEeecCCceeec-------Ccccc-cCCCeEEEEeeCCeEEEEeCCC
Q 003331 667 HVVALD-S-S-----------------G--SIIWRCRTGGPIFAG-------PCTSF-ALPSQVLICSRNGSIYSFEQES 717 (829)
Q Consensus 667 ~i~~~d-~-~-----------------g--~~~w~~~~~~~~~~~-------~~~~~-~~~~~i~~~t~~g~l~~~d~~t 717 (829)
.+..++ . + + ...+.......+... +.... .....+++++.+|.|+.||..+
T Consensus 304 ~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 304 SLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp CEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred eEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 565655 1 1 1 111211112222111 10000 1123678888899999999888
Q ss_pred CcEEEEE-------ec-CCccccccccc---------------cccccccc-------cccCCCcEEEEEccCCcEEEEE
Q 003331 718 GNLLWEY-------SV-GDPITASAYID---------------EHLQLKLE-------SCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 718 G~~~w~~-------~~-~~~~~~~~~~~---------------~~~~~~~~-------~~~~~~~~l~~~~~~G~l~~~d 767 (829)
|...... .. ...+....+.. ....+... ....++..++.|+.||.|.+||
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd 463 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYD 463 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEE
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEE
Confidence 8543220 00 01111000000 00001110 1123578999999999999999
Q ss_pred eecCccccccccccccceeeee-ec-----cCCcccccceE--ECCEEEEeeeCCeEEEEeccccc
Q 003331 768 VNLDVTGKENQSKDHMVQEFAK-LE-----LQGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQH 825 (829)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~ 825 (829)
..++..... ..+.. .. .+...+.+..+ ++..|.+|+.||.|..||..+++
T Consensus 464 ~~~g~~~~~--------~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 464 ASHGDIQDN--------ASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SSCCTTTTT--------BCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCCccccCC--------ceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 987632100 00100 00 11112222223 36789999999999999998874
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.1e-10 Score=119.90 Aligned_cols=266 Identities=11% Similarity=0.043 Sum_probs=158.2
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCe----
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE---- 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~---- 559 (829)
+..+++++.++.|+.||..+++.++.+..+.. ......++++++.+|+.+ .++.|+.||..+|+.++.+..+..
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 34455566789999999999999988876651 123567788888887765 478999999999999888765431
Q ss_pred --eeeeeeeecCCCEEEEeccC------------CeEEEEEcCCCeEE---EeeccCCcccccceeecCCCEEEEEecCC
Q 003331 560 --VKCQPVVDAPRQLIWCGSHD------------HNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 560 --~~~~~~~~~~~~~i~~gs~~------------g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~~~~l~v~t~~g 622 (829)
......+++++..+|+++.+ +.|+.||..+++.. ........ .....+++++. +|+++ +
T Consensus 91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~-l~~~~--~ 166 (349)
T 1jmx_B 91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ-VYLMRAADDGS-LYVAG--P 166 (349)
T ss_dssp EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS-CCCEEECTTSC-EEEES--S
T ss_pred cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc-ccceeECCCCc-EEEcc--C
Confidence 12334566677889988754 89999999885432 22222222 23344666555 88764 3
Q ss_pred eEEEEEccCCCceEEEeeccCCcc---e---------------------eeeeeeecCCEE-EEEeeCCeEEEEc-CCCC
Q 003331 623 RLTAISVKALPFHTLWLHELEVPA---F---------------------ASLCITSANRHV-ICCLVDGHVVALD-SSGS 676 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~---~---------------------~s~~~~~~~~~l-~~~~~~g~i~~~d-~~g~ 676 (829)
.++.||..+ ++........... . ....+..++... ........+..++ .+++
T Consensus 167 ~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
T 1jmx_B 167 DIYKMDVKT--GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 244 (349)
T ss_dssp SEEEECTTT--CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred cEEEEeCCC--CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence 499999887 7777665433200 0 000010000000 0000111233356 5555
Q ss_pred EE-EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE
Q 003331 677 II-WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC 755 (829)
Q Consensus 677 ~~-w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 755 (829)
+. |.....+.......+....+..+|++ ++.|+.||..+++.+..+..+.......+ ..+++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~------------s~dg~~l~ 310 (349)
T 1jmx_B 245 THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAF------------DKKGDKLY 310 (349)
T ss_dssp EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEE------------CSSSSCEE
T ss_pred EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEE------------CCCCCEEE
Confidence 43 22221111111111111024467776 78999999999998877765543322111 12367888
Q ss_pred EEccCCcEEEEEeecC
Q 003331 756 ICTSSGSIHILRVNLD 771 (829)
Q Consensus 756 ~~~~~G~l~~~d~~~~ 771 (829)
++..++.|.+||.+++
T Consensus 311 ~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 311 LGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EESBSSEEEEEETTTT
T ss_pred EecCCCeEEEEecccc
Confidence 8888999999998765
|
| >4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.7e-13 Score=108.17 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=63.9
Q ss_pred ccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 285 TKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+.+++++.|+++|+++|+.+.++.+++||++|||||+|++|+.+| .+++..+|++||+..|+.+|.+..
T Consensus 12 ~~~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~~l~~~~ 87 (93)
T 4i4d_A 12 TRRRALERDIAAIWAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTDHVHATL 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHHHHHHHc
Confidence 4567899999999999999999999999999999999999998765 488999999999999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-10 Score=117.73 Aligned_cols=240 Identities=12% Similarity=0.044 Sum_probs=147.9
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCC--cEEEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCe--
Q 003331 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTG--DIYWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR-- 591 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~-- 591 (829)
...+..++.++..+++|+.|+.|..||..++ +.+.++..+........+.. .+..|++++.|+.++.||..+++
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~ 90 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWS 90 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBC
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceE
Confidence 3446678888899999999999999998643 55556655544444444432 25788999999999999998874
Q ss_pred EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec-------------C
Q 003331 592 CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA-------------N 656 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~-------------~ 656 (829)
.+..+..+.....+..+.++ +..+++++.+|.+..||..+.................+..+.++ +
T Consensus 91 ~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~ 170 (297)
T 2pm7_B 91 QIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 170 (297)
T ss_dssp CCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------C
T ss_pred EEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCc
Confidence 23333333333444455443 56899999999999999876211111112222222233333332 4
Q ss_pred CEEEEEeeCCeEEEEc-CCCCEEE----EeecC-CceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEec---
Q 003331 657 RHVICCLVDGHVVALD-SSGSIIW----RCRTG-GPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSV--- 726 (829)
Q Consensus 657 ~~l~~~~~~g~i~~~d-~~g~~~w----~~~~~-~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~--- 726 (829)
..++.++.|+.|..|| .+++..+ .+... ..+....+.+.. .+..+..++.|+.|..||..++...|....
T Consensus 171 ~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~ 250 (297)
T 2pm7_B 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE 250 (297)
T ss_dssp CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred ceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec
Confidence 5788999999999999 7666322 22221 122222111111 124577888999999999877543332211
Q ss_pred ---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 727 ---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 727 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
...+... +..+++..+++++.||.|.+|+..
T Consensus 251 ~~~~~~v~~~------------~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 251 EKFPDVLWRA------------SWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCCSSCEEEE------------EECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccCCCcEEEE------------EECCCCCEEEEEcCCCcEEEEEEC
Confidence 1111111 122347889999999999999876
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-10 Score=121.91 Aligned_cols=225 Identities=12% Similarity=0.037 Sum_probs=142.8
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC---------CCeEEEee
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR---------NYRCVYKL 596 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~---------tg~~~w~~ 596 (829)
.++..+++|+.|+.|+.||..+|+.+..+... .+. ...+.+ . +++++.|+.+..|+.. +++.+..+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~-~v~-~~~~~~--~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTP-NPR-TGGEHP--A-IISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEE-CCC-TTCCCC--S-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecC-Cce-eeeeCC--c-eEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 45568999999999999999999988876521 111 111222 1 6777777777777654 45444444
Q ss_pred ccC-Ccccccceeec--CCCEEEEEecCCeEEEEEccCCCceEEEeeccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 597 PCG-GSIFGSPAIDE--VHDVLYVASTSGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 597 ~~~-~~~~~~~~~~~--~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
... ........+.+ ++..++.++.+|.+..||+.+ ++........ .....+..+.+++..+++|+.+|.|..||
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp ECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred ecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 322 12233444555 567888899999999999987 7665444222 22345667777888899999999999999
Q ss_pred -CCCCEE-EEeec--CCceeecCcccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEec---C-Cccccccccccccccc
Q 003331 673 -SSGSII-WRCRT--GGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSV---G-DPITASAYIDEHLQLK 743 (829)
Q Consensus 673 -~~g~~~-w~~~~--~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~---~-~~~~~~~~~~~~~~~~ 743 (829)
.+++.+ ..+.. ..++.... ...++ .+..++ ++.|..||..+++....+.. + ..+.. .
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~---fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~----------~ 264 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVK---FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT----------V 264 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEE---ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CC----------E
T ss_pred CCCCCCCccEEeccCCCCEEEEE---EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccc----------e
Confidence 888766 55544 33333322 22344 455556 66999999998876432221 0 00000 0
Q ss_pred cccccCCCcEEEEEcc-CCcEEEEEeecC
Q 003331 744 LESCLSIDRLVCICTS-SGSIHILRVNLD 771 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~-~G~l~~~d~~~~ 771 (829)
.....+++.++++++. ++.+.+|+...+
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 0111234778888777 899999998654
|
| >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-12 Score=106.51 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=63.0
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+.+++++.|+++|+++|+.+.++++++||++|||||.|++|+.+| .+++..+|++||+.+||.++.+.
T Consensus 9 ~~p~~~~e~~l~~i~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~i~~~ 84 (91)
T 1dny_A 9 VAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATR 84 (91)
T ss_dssp CCCSSHHHHHHHHHHHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHh
Confidence 35678899999999999999999999999999999999999998765 47889999999999999998764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-10 Score=116.27 Aligned_cols=283 Identities=12% Similarity=0.048 Sum_probs=176.3
Q ss_pred eEEeeCCcEEEEEEe-----CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEEE
Q 003331 522 AAVLADFSQVVVGCY-----KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYALD 586 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~-----dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~d 586 (829)
....+++..+|+... ++.|+.+|..+++++.++..+... . ..+++++..+|+++ .++.|..||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445578889999976 578999999999999999876654 3 67788888999976 246799999
Q ss_pred cCCCeEEEeeccCC-------cccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCC
Q 003331 587 FRNYRCVYKLPCGG-------SIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR 657 (829)
Q Consensus 587 ~~tg~~~w~~~~~~-------~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~ 657 (829)
..+++.+..+..+. ..-....+++++..+|++.. ++.|.++|..+ ++.+-++...... ........
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t--~~vv~tI~v~g~~---~~~P~g~~ 190 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCY---HIFPTAPD 190 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEE---EEEEEETT
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC--CcEEEEEECCCcc---eeecCCCc
Confidence 99999988876542 12234567777899999874 57899999988 8887777554321 11112344
Q ss_pred EEEEEeeCCeEEEEc-C-CCCEEEEeecC-----CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE--EEecCC
Q 003331 658 HVICCLVDGHVVALD-S-SGSIIWRCRTG-----GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW--EYSVGD 728 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~-~g~~~w~~~~~-----~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w--~~~~~~ 728 (829)
.++..+.+|.+..++ . +|+..-..... .+++..+.. ...++.+++.+.+|.++.+|..++.... ....-.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~-~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY-SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE-ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee-EcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 566677788888888 4 36653211100 111111100 1246777778889999999987765321 111000
Q ss_pred c-cccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCccc
Q 003331 729 P-ITASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIF 797 (829)
Q Consensus 729 ~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (829)
. .....+....... ......++.+|+... ...|+++|..++ ++.....+.....
T Consensus 270 ~~~~~~g~~p~g~q~--~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-------------kv~~~i~vg~~~~ 334 (386)
T 3sjl_D 270 EAERADGWRPGGWQQ--VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG-------------ERLAKFEMGHEID 334 (386)
T ss_dssp HHHHHTTEEECSSSC--EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEEEEEEEC
T ss_pred cccccccccCCCcce--eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC-------------eEEEEEECCCCcc
Confidence 0 0000000000000 001123788888753 246999998866 4455544443332
Q ss_pred ccceEECC--EEEEeee-CCeEEEEeccccccc
Q 003331 798 SSPVMIGG--RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 798 ~s~~~~~~--~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
+-.+..++ .||+.+. ++.|..+|..++++.
T Consensus 335 ~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 335 SINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 22222333 5777665 789999999999864
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-10 Score=117.10 Aligned_cols=274 Identities=13% Similarity=0.117 Sum_probs=170.2
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEE-EEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQV-VVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v-~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
++.++..+.+|+.++ +..||..+++.......++ + ....+..+.+.+ ++++.|+.|..||..+|+.+..+.....+
T Consensus 27 fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v 103 (355)
T 3vu4_A 27 FNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH-L-SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPV 103 (355)
T ss_dssp ECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC-C-CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCE
T ss_pred ECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC-e-EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCce
Confidence 344566777787765 7899999888776655443 2 233344444555 56777889999999999999888766655
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCC-eEEEeeccCCcccccceeecCCCEEEE--EecCCeEEEEEccCCCce--
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNY-RCVYKLPCGGSIFGSPAIDEVHDVLYV--ASTSGRLTAISVKALPFH-- 635 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~l~v--~t~~g~l~~~~~~~~~g~-- 635 (829)
... .+. ...++++ .++.++.||..++ +.+..+.. ......+.. ..+.+ ++.+|.|..||..+ ++
T Consensus 104 ~~v-~~~--~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~--~~~~ 172 (355)
T 3vu4_A 104 KDL-FLS--REFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS--SGSA 172 (355)
T ss_dssp EEE-EEC--SSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------
T ss_pred EEE-EEc--CCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC--CCcc
Confidence 433 233 2445554 4778999999987 55544433 112223333 55555 47789999999886 43
Q ss_pred -------------E-EEeeccCCcceeeeeeeecCCEEEEEeeCCe-EEEEc-CCCCEEEEee---cCCceeecCccccc
Q 003331 636 -------------T-LWLHELEVPAFASLCITSANRHVICCLVDGH-VVALD-SSGSIIWRCR---TGGPIFAGPCTSFA 696 (829)
Q Consensus 636 -------------~-~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~-i~~~d-~~g~~~w~~~---~~~~~~~~~~~~~~ 696 (829)
+ +..+..+.....+..+.+++..++.++.++. +..|| .+|+.+..+. ....+....+.+
T Consensus 173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~-- 250 (355)
T 3vu4_A 173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST-- 250 (355)
T ss_dssp --------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT--
T ss_pred ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC--
Confidence 1 3334444444567778888899999999998 99999 8999988776 233343332111
Q ss_pred CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc----cccccccccccc--------ccccccCCCcEEEEEccCCcEE
Q 003331 697 LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI----TASAYIDEHLQL--------KLESCLSIDRLVCICTSSGSIH 764 (829)
Q Consensus 697 ~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~G~l~ 764 (829)
.+..+..++.|+.|..||..++............ ...........+ ..-+...++..+++++.||.++
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 2346788889999999998776432111111000 000000000000 0011234477899999999999
Q ss_pred EEEeecC
Q 003331 765 ILRVNLD 771 (829)
Q Consensus 765 ~~d~~~~ 771 (829)
.|+...+
T Consensus 331 ~~~~~~~ 337 (355)
T 3vu4_A 331 TFKVVFD 337 (355)
T ss_dssp EEEEEEE
T ss_pred EEEEEcC
Confidence 9988754
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.3e-11 Score=139.69 Aligned_cols=243 Identities=12% Similarity=0.072 Sum_probs=158.6
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcC--CCcEEEEEecCCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCe-
Q 003331 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYL--TGDIYWTFQTCGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYR- 591 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~--tG~~~w~~~~~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~- 591 (829)
....+..+++++..+++|+.||.|..||.. +++.+..+..+........+..+ +..+++++.||.|+.||..+++
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~ 89 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 334456677788889999999999999987 45566666555444445555544 6789999999999999999987
Q ss_pred -EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeee-------------c
Q 003331 592 -CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITS-------------A 655 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~-------------~ 655 (829)
.......+........+.++ +..+++++.+|.|..||..+.................+..+.+ +
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d 169 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKE 169 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGG
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCC
Confidence 45555545555556666665 6889999999999999988721122222222333334444544 4
Q ss_pred CCEEEEEeeCCeEEEEc-CCCCEEEE----eec-CCceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEec--
Q 003331 656 NRHVICCLVDGHVVALD-SSGSIIWR----CRT-GGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYSV-- 726 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~~g~~~w~----~~~-~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~~-- 726 (829)
+..+++++.+|.|..|| .++...+. +.. ...+....+.+... +..++.++.||.|..||..+++..+....
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 249 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 249 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSS
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEec
Confidence 67899999999999999 66643322 221 22232221111100 34678888999999999988753322111
Q ss_pred ----CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 727 ----GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 727 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
...+... ...+++..+++++.||.|++||...+
T Consensus 250 ~~~~~~~v~~l------------~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 250 EEKFPDVLWRA------------SWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SSCCSSCCCCE------------EECTTTCCEEEECSSSCEECCBCCSS
T ss_pred cCCCCCceEEE------------EEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 1111111 11234788999999999999998753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-09 Score=109.82 Aligned_cols=268 Identities=11% Similarity=0.054 Sum_probs=147.5
Q ss_pred ceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEE-ecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEE-Eee
Q 003331 521 SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTF-QTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCV-YKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~-w~~ 596 (829)
+..+..+ +.+|+++. ++.|+.||.. |+..... ...........++ .++.+|+++. ++.|+.+|.+ |+.. +..
T Consensus 19 ~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 94 (299)
T 2z2n_A 19 GITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTIS-SDGEVWFTENAANKIGRITKK-GIIKEYTL 94 (299)
T ss_dssp EEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred ceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEEC-CCCCEEEeCCCCCeEEEECCC-CcEEEEeC
Confidence 3444444 56888876 6889999987 7665322 1122222333343 4567888765 6789999976 5432 222
Q ss_pred ccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcC
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRHVICCLV-DGHVVALDS 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~ 673 (829)
.........++++. ++.+|+++. ++.++.+|. + |+.... ............+. .++.+|+++. ++.|+.+|.
T Consensus 95 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~--g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 95 PNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-D--GKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp SSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T--CCEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT
T ss_pred CCcCCCceeeEECC-CCCEEEEecCCceEEEECC-C--CCEEEecCCCCCCCCceEEEc-CCCCEEEEeCCCCEEEEEcC
Confidence 21222223344554 567888764 678999998 4 544322 11111122233333 3567888765 578999997
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCC
Q 003331 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 750 (829)
+|+.... ...........+..+.++.+|+++. ++.|+.+|. +|++.. +..... .......+ .
T Consensus 170 ~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~------------~ 234 (299)
T 2z2n_A 170 SGDITEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAG------------A 234 (299)
T ss_dssp TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEEC------------S
T ss_pred CCcEEEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEEC------------C
Confidence 6665432 1111111111123445678999875 678999998 787643 222211 11111111 1
Q ss_pred CcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003331 751 DRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 751 ~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++.+|+++ .++.|+++|.+ +. +..+..+ ........+.++.||+++..+.|+++++++++++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~~-g~--------------~~~~~~~~~~~~~~~i~~~~g~l~v~~~~~~l~~~~~~~~~~~ 299 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTSN-NI--------------IEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTLIKDNME 299 (299)
T ss_dssp TTCEEEEETTTTEEEEEETT-TE--------------EEEEECSSSSCCEEEEEECSSCEEEEETTTEEEEEEEC-----
T ss_pred CCCEEEeccCCceEEEECCC-Cc--------------eEEEeCCCCCCccceEEecCCCEEEEecCCcEEEEEcCcccCC
Confidence 56688887 56789999873 21 1112111 1112222226789999988889999999988764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-10 Score=121.56 Aligned_cols=239 Identities=8% Similarity=0.060 Sum_probs=151.0
Q ss_pred eceEEeeC-CcEEEEEEeCCEEEEEEcCC----------CcEEEEEecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEc
Q 003331 520 CSAAVLAD-FSQVVVGCYKGKIYFLDYLT----------GDIYWTFQTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDF 587 (829)
Q Consensus 520 ~~~~~~~~-~~~v~vg~~dg~l~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~ 587 (829)
....+.++ +..+++++.+|.|+.||..+ ++.+..+..+........+.+.+. .+++|+.+|.|+.||.
T Consensus 132 ~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 211 (430)
T 2xyi_A 132 NRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211 (430)
T ss_dssp SEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEET
T ss_pred EEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeC
Confidence 35566664 45788888899999999876 566666665554444555655545 8999999999999999
Q ss_pred CCCeE-------EEeeccCCcccccceeec-CCCEEEEEecCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecCC-
Q 003331 588 RNYRC-------VYKLPCGGSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSANR- 657 (829)
Q Consensus 588 ~tg~~-------~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~- 657 (829)
.++.. ...+..+........+.+ ++..+++++.+|.|..||+.+.. .+.+...........+..+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 212 NATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp TSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred CCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence 87422 122222333334445554 45677888899999999998721 134444444444445666666665
Q ss_pred EEEEEeeCCeEEEEc-CC-CCEEEEeecC-CceeecCcccccCCCeEEEEeeCCeEEEEeCCCC--------------cE
Q 003331 658 HVICCLVDGHVVALD-SS-GSIIWRCRTG-GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG--------------NL 720 (829)
Q Consensus 658 ~l~~~~~~g~i~~~d-~~-g~~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG--------------~~ 720 (829)
.+++|+.+|.|.+|| .+ +..+..+... ..+....+ .......+..++.+|.|..||..+. ++
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~-sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEE-CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 577889999999999 65 4555555432 23332221 1111235777888999999998762 33
Q ss_pred EEEEecCCc-cccccccccccccccccccCCCc-EEEEEccCCcEEEEEeecC
Q 003331 721 LWEYSVGDP-ITASAYIDEHLQLKLESCLSIDR-LVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 721 ~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~G~l~~~d~~~~ 771 (829)
+..+..+.. +....+ ...+. .+++++.+|.|.+|+...+
T Consensus 371 ~~~~~~h~~~v~~~~~------------~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 371 LFIHGGHTAKISDFSW------------NPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECCCCSSCEEEEEE------------CSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEcCCCCCCceEEEE------------CCCCCCEEEEEECCCCEEEeEcccc
Confidence 333322221 221111 12244 7888999999999998754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-09 Score=114.10 Aligned_cols=268 Identities=10% Similarity=0.054 Sum_probs=178.4
Q ss_pred CCeEEEEecCC-----CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003331 485 SDIYLFVGSHS-----HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+..++|+.... +.|..+|+.|++++++++.+... ...++++++.+|++.. ++.|..+|..+++
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 45678887653 68999999999999999887654 6788999999999873 5689999999999
Q ss_pred EEEEEecC-------CeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003331 550 IYWTFQTC-------GEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 550 ~~w~~~~~-------~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
++.++..+ +.......++++++.+|++.. ++.|..+|.++++.+.++..++... ........++..+.
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~---~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYH---IFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE---EEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCcee---eccCCCcEEEEEcC
Confidence 99887764 111233456778889999864 5789999999999998887654311 11111234455567
Q ss_pred CCeEEEEEccCCCceEEEee----ccC-CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecCCce---
Q 003331 621 SGRLTAISVKALPFHTLWLH----ELE-VPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTGGPI--- 687 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~----~~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~~~~--- 687 (829)
+|.+..++..+ ++..+.. ... .+.+....+..+++.+|+.+..+.++++| .++... |.......+
T Consensus 238 dG~~~~V~~~~--~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 238 DGSLARVDFAD--GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp TSSEEEEECCT--TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred CCCEEEEECCC--CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 88888888754 6655432 111 22223344566778888888889999999 554422 322110000
Q ss_pred -eec---CcccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003331 688 -FAG---PCTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 688 -~~~---~~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
... +......++.+|+... ++.|..+|..+++.+-++..+.......+. .++.
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~s------------pDg~~ 383 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVS------------QDAEP 383 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEEC------------CSSSC
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEc------------cCCCE
Confidence 000 0111112468898764 347999999999998777665432222111 2256
Q ss_pred EEEEEc-cCCcEEEEEeecC
Q 003331 753 LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~~~ 771 (829)
++|+.. .++.|.++|..++
T Consensus 384 ~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 384 LLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEcCCCCeEEEEECCCC
Confidence 788887 4899999999866
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.27 E-value=8.7e-09 Score=109.22 Aligned_cols=265 Identities=10% Similarity=0.018 Sum_probs=170.7
Q ss_pred CCeEEEEecC-C-C---cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003331 485 SDIYLFVGSH-S-H---KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs~-~-g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
+...+|+... . + .|+.||..+++++-+++.+... ...+++|++.+|+... ++.|..||..+++
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 4467887764 2 2 7899999999988776655432 6788999999999863 5679999999999
Q ss_pred EEEEEecC-------CeeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEe-eccCCcccccceeecCCC-EEEEE
Q 003331 550 IYWTFQTC-------GEVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHD-VLYVA 618 (829)
Q Consensus 550 ~~w~~~~~-------~~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~-~l~v~ 618 (829)
++.+...+ +.......++++++.+|++.. ++.|..+| ++++.+.. +..++. ..+...+. .++..
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHPGAPSTFYLL 183 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEeCCCceEEEE
Confidence 98877664 111234567778899999864 47799999 99999877 665443 12222233 34445
Q ss_pred ecCCeEEEEEccCCCceEEEeecc------CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--E--EEeecCC--
Q 003331 619 STSGRLTAISVKALPFHTLWLHEL------EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--I--WRCRTGG-- 685 (829)
Q Consensus 619 t~~g~l~~~~~~~~~g~~~w~~~~------~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~--w~~~~~~-- 685 (829)
+.+|.+..++. + |+..+.... ..+.+..+....+++.+|+.+..+.++++| .++.. + |......
T Consensus 184 ~~dg~~~~vd~-~--g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~ 260 (373)
T 2mad_H 184 CAQGGLAKTDH-A--GGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRK 260 (373)
T ss_pred cCCCCEEEEEC-C--CcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccc
Confidence 56888999998 6 776654321 122223344455566766666788999999 54432 1 2211100
Q ss_pred ceeecC-----cccccCCCeEEEEee----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003331 686 PIFAGP-----CTSFALPSQVLICSR----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 686 ~~~~~~-----~~~~~~~~~i~~~t~----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
.....| ......++.+|+... ++.|..+|.++++.+-++..+.......+. .+
T Consensus 261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s------------~D 328 (373)
T 2mad_H 261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVA------------QD 328 (373)
T ss_pred ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEEC------------CC
Confidence 000000 001123467898754 357999999999998777765533222221 12
Q ss_pred Cc-EEEEEc-cCCcEEEEEeecC
Q 003331 751 DR-LVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 751 ~~-~l~~~~-~~G~l~~~d~~~~ 771 (829)
+. .+|++. .++.|.++|..++
T Consensus 329 g~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 329 GGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CCeEEEEEcCCCCeEEEEECCCC
Confidence 55 678777 4889999999865
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.6e-09 Score=107.46 Aligned_cols=268 Identities=11% Similarity=0.097 Sum_probs=152.1
Q ss_pred ceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEE
Q 003331 478 PLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 478 p~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~ 553 (829)
|.-+..+.++.+|+++. ++.|+.||.. ++... +... ........+..+ +.+|+++. ++.|+.+|.. |+.. .
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~~-g~~~-~ 91 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPTPDAKVMCLTISSD-GEVWFTENAANKIGRITKK-GIIK-E 91 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE-E
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCcccCceeeEEECCC-CCEEEeCCCCCeEEEECCC-CcEE-E
Confidence 33344467788999987 5789999988 77653 2322 222223444444 56888876 6789999975 6543 2
Q ss_pred Eec--CCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEee-ccCCcccccceeecCCCEEEEEec-CCeEEEEE
Q 003331 554 FQT--CGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKL-PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAIS 628 (829)
Q Consensus 554 ~~~--~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~-~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~ 628 (829)
+.. .........++ .++.+|+++ .++.|+.+|+ +|+..... .........++++. ++.+|+++. ++.|+.+|
T Consensus 92 ~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 92 YTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEEC
T ss_pred EeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEc
Confidence 322 12222333343 456788875 4678999998 66654322 21222233444554 467888765 57899999
Q ss_pred ccCCCceEEEe-eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-
Q 003331 629 VKALPFHTLWL-HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS- 705 (829)
Q Consensus 629 ~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t- 705 (829)
. + |+.... ............+.. ++.+|+++. ++.|..+|.+|+... +...........+..+.++.+|+++
T Consensus 169 ~-~--g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 169 E-S--GDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITE-FKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp T-T--CCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEECSTTCEEEEET
T ss_pred C-C--CcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEE-EECCCCCCCceeEEECCCCCEEEecc
Confidence 8 4 655432 111111122333433 456888874 578999996665432 2222111111122345578899997
Q ss_pred eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 706 RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
.++.|+.+|+ +|++. .+....... .+. .+ .. .++.+|+++..++|..++.+++
T Consensus 244 ~~~~i~~~d~-~g~~~-~~~~~~~~~-~~~---~i------~~-~~g~l~v~~~~~~l~~~~~~~~ 296 (299)
T 2z2n_A 244 GANKIGRLTS-NNIIE-EYPIQIKSA-EPH---GI------CF-DGETIWFAMECDKIGKLTLIKD 296 (299)
T ss_dssp TTTEEEEEET-TTEEE-EEECSSSSC-CEE---EE------EE-CSSCEEEEETTTEEEEEEEC--
T ss_pred CCceEEEECC-CCceE-EEeCCCCCC-ccc---eE------Ee-cCCCEEEEecCCcEEEEEcCcc
Confidence 4688999998 56643 332221110 000 00 01 2778999977788999988743
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.9e-09 Score=111.10 Aligned_cols=229 Identities=5% Similarity=-0.018 Sum_probs=145.4
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC--cEEEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCc--EEEEEec
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRS--SVLWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGD--IYWTFQT 556 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg--~~~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~ 556 (829)
+.++..|..|+.|+.|..||..++ +.+-.+..+.....+..++. ++..+++++.|+.|..||..+|+ .+..+..
T Consensus 18 s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~ 97 (297)
T 2pm7_B 18 DYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV 97 (297)
T ss_dssp CTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECC
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeec
Confidence 345778999999999999998643 55555665655555666654 36789999999999999998885 3333433
Q ss_pred CCeeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeecC-------------CCEEEEEe
Q 003331 557 CGEVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDEV-------------HDVLYVAS 619 (829)
Q Consensus 557 ~~~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~~-------------~~~l~v~t 619 (829)
+........+.++ +..+++++.|+.++.||..++.. ...+..+.....+..+.++ +..++.++
T Consensus 98 h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs 177 (297)
T 2pm7_B 98 HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177 (297)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE
T ss_pred CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc
Confidence 3333344445543 56889999999999999887631 1122222222222222221 35788899
Q ss_pred cCCeEEEEEccCCCce----EEEeeccCCcceeeeeeeecC---CEEEEEeeCCeEEEEc-CCCCEEEEee------cCC
Q 003331 620 TSGRLTAISVKALPFH----TLWLHELEVPAFASLCITSAN---RHVICCLVDGHVVALD-SSGSIIWRCR------TGG 685 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~----~~w~~~~~~~~~~s~~~~~~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~------~~~ 685 (829)
.|+.|..||..+ ++ ....+..+.....+..+.+++ ..+..++.|+.|..|| .++...|... ...
T Consensus 178 ~D~~v~lwd~~~--~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 178 ADNLVKIWKYNS--DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (297)
T ss_dssp TTSCEEEEEEET--TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CCCcEEEEEEcC--CCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCC
Confidence 999999999886 43 233333333334556666653 5788889999999999 6543222211 112
Q ss_pred ceeecCccccc-CCCeEEEEeeCCeEEEEeCC
Q 003331 686 PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 686 ~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+.... .. .+..|..++.||.|..|+..
T Consensus 256 ~v~~~~---~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 256 VLWRAS---WSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEE---ECSSSCCEEEEETTSCEEEEEEC
T ss_pred cEEEEE---ECCCCCEEEEEcCCCcEEEEEEC
Confidence 222211 22 23457778889999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-10 Score=134.72 Aligned_cols=231 Identities=6% Similarity=-0.008 Sum_probs=155.6
Q ss_pred CCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEeeC--CcEEEEEEeCCEEEEEEcCCCc--EEEEEecCC
Q 003331 485 SDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVLAD--FSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~~~--~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~ 558 (829)
++..+++|+.+|.|..||.. +++....+..+.....+..++.+ +..+++|+.||.|+.||..+++ ....+..+.
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 46678899999999999987 44555555555555556777766 7899999999999999999987 444454444
Q ss_pred eeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeE--EEeeccCCcccccceeec-------------CCCEEEEEecC
Q 003331 559 EVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRC--VYKLPCGGSIFGSPAIDE-------------VHDVLYVASTS 621 (829)
Q Consensus 559 ~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~-------------~~~~l~v~t~~ 621 (829)
.......+.++ +..+++|+.||.++.||..++.. ......+........+.+ ++..+++++.+
T Consensus 100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d 179 (753)
T 3jro_A 100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (753)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETT
T ss_pred CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECC
Confidence 44455566665 78899999999999999987732 222222222333333333 35789999999
Q ss_pred CeEEEEEccCCCc--eEEEeeccCCcceeeeeeeec---CCEEEEEeeCCeEEEEc-CCCCEEEEeec------CCceee
Q 003331 622 GRLTAISVKALPF--HTLWLHELEVPAFASLCITSA---NRHVICCLVDGHVVALD-SSGSIIWRCRT------GGPIFA 689 (829)
Q Consensus 622 g~l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~---~~~l~~~~~~g~i~~~d-~~g~~~w~~~~------~~~~~~ 689 (829)
|.|..||..+... ........+.....+..+.++ +..+++++.+|.|.+|| .+++..+.... ...+..
T Consensus 180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 9999999886211 333333333444566677777 67888999999999999 66642222111 111111
Q ss_pred cCccccc-CCCeEEEEeeCCeEEEEeCCCC
Q 003331 690 GPCTSFA-LPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 690 ~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG 718 (829)
+... .+..+++++.||.|+.|+..++
T Consensus 260 ---l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 260 ---ASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ---EEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ---EEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 1122 2446888889999999998754
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.6e-12 Score=132.60 Aligned_cols=120 Identities=22% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCCCccEEEEecCCCCHhHHHHHH-HhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccc------cCC
Q 003331 16 VPSSLKLLVLSGEVLPLSMWDIIS-KLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLP------ISN 88 (829)
Q Consensus 16 ~~~~lr~i~~gGe~l~~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p------~~~ 88 (829)
.+++||.+++|||++++++.+++. +.+|+++++|.||+||+++.+.. +. ..++|+| +++
T Consensus 229 ~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~--~~------------~~~~G~~~~~~~~~~~ 294 (369)
T 3hgu_A 229 MKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRS--LL------------ITSESQQVIYDSFSPF 294 (369)
T ss_dssp HHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEE--CC------------BCTTCSSCEEECCTTT
T ss_pred ccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceec--cc------------cccCCCcccccCCCCC
Confidence 457899999999999999999999 89989999999999998865431 11 1157888 999
Q ss_pred cEEEEecC-CC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC--C-
Q 003331 89 CDIVLVES-DT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS--G- 161 (829)
Q Consensus 89 ~~~~i~d~-~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~--G- 161 (829)
++++|+|+ ++ ++|+.|||+|.+.. .+.| -..|+|||++++.+. |
T Consensus 295 ~~v~ivD~~~g~~vp~G~~GEl~vt~l~------------~~~~-----------------l~ry~tgD~~~~~~~~~g~ 345 (369)
T 3hgu_A 295 ITYDVVDSITAQTVEYGERGNVIVTHLS------------PWAF-----------------YPRVAERDTAIRLPGVSGF 345 (369)
T ss_dssp EEEEEECTTTCSBCCTTCEEEEEEEEEE------------TTEE-----------------EEEEEEEEEEEEECCSTTC
T ss_pred eEEEEECCCCCcCCCCCCceEEEEEEcC------------cccc-----------------cccccCCceEEEecCCCCC
Confidence 99999987 44 35677999998742 1111 123999999987543 2
Q ss_pred ------cEEEEeecCCcEEECCe
Q 003331 162 ------DLVFLGRKDRTIKINGQ 178 (829)
Q Consensus 162 ------~l~~~GR~dd~ik~~G~ 178 (829)
.+..++|.|+++|+.|.
T Consensus 346 ~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 346 AGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp SSCEEEEEEECC-----------
T ss_pred cCcccccceeccccCCCceeeec
Confidence 36778899999999885
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=113.70 Aligned_cols=272 Identities=10% Similarity=0.066 Sum_probs=160.4
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-eeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCC
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-VKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
.+..++..+++++.++.|+.||..+|+.++.+..+.. ......+.++++.+|+. ..++.|+.||..+++.++.+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 3444544556667789999999999999988876541 12344566666677765 457899999999999988776532
Q ss_pred ------cccccceeecCCCEEEEEecC------------CeEEEEEccCCCceEEE---eeccCCcceeeeeeeecCCEE
Q 003331 601 ------SIFGSPAIDEVHDVLYVASTS------------GRLTAISVKALPFHTLW---LHELEVPAFASLCITSANRHV 659 (829)
Q Consensus 601 ------~~~~~~~~~~~~~~l~v~t~~------------g~l~~~~~~~~~g~~~w---~~~~~~~~~~s~~~~~~~~~l 659 (829)
.....+.+++++..+|++..+ +.|+.||+.+ ++... ...... ......+.+++. +
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~-~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPR-QVYLMRAADDGS-L 161 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCS-SCCCEEECTTSC-E
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--ccccceeeeccCCC-cccceeECCCCc-E
Confidence 123455677777889988854 8899999886 43221 122111 123444666666 7
Q ss_pred EEEeeCCeEEEEc-CCCCEEEEeecCCc---eeecCc----ccccCCCeEEE------Ee-----------eCCeEEEEe
Q 003331 660 ICCLVDGHVVALD-SSGSIIWRCRTGGP---IFAGPC----TSFALPSQVLI------CS-----------RNGSIYSFE 714 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~w~~~~~~~---~~~~~~----~~~~~~~~i~~------~t-----------~~g~l~~~d 714 (829)
|+++ +.++++| .+|+....+..... ....+- .........+. -+ ....+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 7753 4599999 88988877654320 000000 00000000000 00 112344577
Q ss_pred CCCCcEE-EEEecCCccccccccccccccccccccC-CCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeecc
Q 003331 715 QESGNLL-WEYSVGDPITASAYIDEHLQLKLESCLS-IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLEL 792 (829)
Q Consensus 715 ~~tG~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (829)
..++++. |............ .... ++..+|++ ++.|++||..++ +.......
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-----------~~sp~dg~~l~~~--~~~v~~~d~~~~-------------~~~~~~~~ 293 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTG-----------LRSPKDPNQIYGV--LNRLAKYDLKQR-------------KLIKAANL 293 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEE-----------EECSSCTTEEEEE--ESEEEEEETTTT-------------EEEEEEEC
T ss_pred ccCCcEEecccccCCCcceee-----------EecCCCCCEEEEE--cCeEEEEECccC-------------eEEEEEcC
Confidence 7777764 2222111111111 1123 37788888 789999998765 22333332
Q ss_pred CCcccccceE--ECCEEEEeeeCCeEEEEeccccccc
Q 003331 793 QGDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 793 ~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
.... ....+ .+..||+++.++.|+.||.++++..
T Consensus 294 ~~~~-~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 294 DHTY-YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp SSCC-CEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCCc-cceEECCCCCEEEEecCCCeEEEEecccccee
Confidence 2221 12222 3568999888999999999988753
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-09 Score=113.65 Aligned_cols=238 Identities=9% Similarity=0.055 Sum_probs=145.3
Q ss_pred ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCCCe-
Q 003331 517 RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRNYR- 591 (829)
Q Consensus 517 ~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~tg~- 591 (829)
..+.+..++.++..|++|+.|+.|..||..+++. +..+..+........+.. ++..|++++.|+.+..||..+++
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence 3345667778888999999999999999988753 445554444334444432 35789999999999999999874
Q ss_pred -EEEeeccCCcccccceeecC--CCEEEEEecCCeEEEEEccCCCceEEEe----eccCCcceeeeeeeec---------
Q 003331 592 -CVYKLPCGGSIFGSPAIDEV--HDVLYVASTSGRLTAISVKALPFHTLWL----HELEVPAFASLCITSA--------- 655 (829)
Q Consensus 592 -~~w~~~~~~~~~~~~~~~~~--~~~l~v~t~~g~l~~~~~~~~~g~~~w~----~~~~~~~~~s~~~~~~--------- 655 (829)
....+..+.....+..+.++ +..++.++.+|.+..|+..+ +. .|. ...+........+.++
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~--~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG--EG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECS--SS-CEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCC--CC-CcceeeeeccccCCcceEEEccccCCcccccc
Confidence 44444444444445555554 45788899999999999875 31 121 1111111112222221
Q ss_pred --------CCEEEEEeeCCeEEEEc-CCCC---EEEEeecC-CceeecCccccc--CCCeEEEEeeCCeEEEEeCCCCcE
Q 003331 656 --------NRHVICCLVDGHVVALD-SSGS---IIWRCRTG-GPIFAGPCTSFA--LPSQVLICSRNGSIYSFEQESGNL 720 (829)
Q Consensus 656 --------~~~l~~~~~~g~i~~~d-~~g~---~~w~~~~~-~~~~~~~~~~~~--~~~~i~~~t~~g~l~~~d~~tG~~ 720 (829)
+..++.++.|+.|..|| .++. .+..+... ..+....+.+.. .+..+..++.||.|..|+..++..
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~ 250 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc
Confidence 34678888899999999 5442 22222221 122222111111 124688899999999999876311
Q ss_pred -EE---EE-ecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 721 -LW---EY-SVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 721 -~w---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
.| .+ .....+....+ .+++..+++++.||.|.+|+..
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~------------sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 251 NTWSPKLLHKFNDVVWHVSW------------SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCBCCEEEECSSCEEEEEE------------CTTTCCEEEEESSSCEEEEEEC
T ss_pred cchhhhhhhcCCCcEEEEEE------------cCCCCEEEEEcCCCeEEEEEEC
Confidence 01 11 12222222221 2337889999999999999876
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-09 Score=106.57 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=142.6
Q ss_pred ceEEeeCCCeEEEEe-cCCCcEEEEECCCCcEEEEEEcCC------ceeeceEEeeCCcEEEEEEe--CCEEEEEEcCCC
Q 003331 478 PLVVLKDSDIYLFVG-SHSHKFICADAKRSSVLWEIKLEG------RIECSAAVLADFSQVVVGCY--KGKIYFLDYLTG 548 (829)
Q Consensus 478 p~v~~~d~~~~l~ig-s~~g~l~~~d~~tg~~~w~~~~~~------~~~~~~~~~~~~~~v~vg~~--dg~l~~~d~~tG 548 (829)
|.-+.-+.++.+|++ +.++.|..||.. |+..+.+.... ......++...++.+|+++. ++.|+.|| .+|
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 433333456678887 467889999986 77777664311 11223444345678998885 78999999 788
Q ss_pred cEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEe-cCCe
Q 003331 549 DIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVAS-TSGR 623 (829)
Q Consensus 549 ~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t-~~g~ 623 (829)
+.+..+.... .......+++ ++.+|++. .++.|+.||. +|+.++.+.... .....++++. ++.+|++. .++.
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHC 186 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTE
T ss_pred cEEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCCE
Confidence 8887775432 1222334444 45577764 5678999995 567776664321 2223445555 46788875 4778
Q ss_pred EEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CC-eEEEEcCCCCEEEEeecCCceeecCcccccCCC
Q 003331 624 LTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DG-HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPS 699 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g-~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~ 699 (829)
|+.|+.+ |+.+..+.... ......++.. ++.+|+++. ++ .|.+|+.+|+.++.+...........+....++
T Consensus 187 i~~~~~~---g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 187 VKVFNYE---GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp EEEEETT---CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred EEEEcCC---CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCC
Confidence 9999975 56666554322 1223444444 457777765 43 899999778887776543221111112344577
Q ss_pred eEEEEeeCCeEEEEeCCC
Q 003331 700 QVLICSRNGSIYSFEQES 717 (829)
Q Consensus 700 ~i~~~t~~g~l~~~d~~t 717 (829)
.+|+++.++.|..|+...
T Consensus 263 ~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 263 SVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEEETTTEEEEEECSC
T ss_pred cEEEECCCCeEEEEEccc
Confidence 888888788888887643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-10 Score=125.15 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=128.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEE-----------EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc-EEEE
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVL-----------WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD-IYWT 553 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~-----------w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-~~w~ 553 (829)
.+.|..++.||.|..||+.+++.. ..+..+.....+..+.++ +.|++|+.||.|..||..+++ ....
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~ 303 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFY 303 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEE
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEE
Confidence 468888999999999999877421 123333344445566554 589999999999999998874 3344
Q ss_pred EecCC-eeeeee-eeecCC-CEEEEeccCCeEEEEEcCCCeEEEeecc--CCcccccceeecCCCEEEEEecCCeEEEEE
Q 003331 554 FQTCG-EVKCQP-VVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVASTSGRLTAIS 628 (829)
Q Consensus 554 ~~~~~-~~~~~~-~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~ 628 (829)
+..+. .+.+.. .+.+++ ..+.+++.|+.+..||..++++...+.. ......+..+.+++..+..++.++.+..||
T Consensus 304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 44444 333321 334444 6788999999999999988764332221 111233456676667888888899999999
Q ss_pred ccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 629 VKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..+ +..+..+..+.....+..+++++..++.|+.|+.|.++|
T Consensus 384 ~~~--~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 384 SRA--AFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp TTC--TTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred Ccc--cccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 887 665454444444556777888888999999999999999
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-08 Score=103.03 Aligned_cols=263 Identities=13% Similarity=0.069 Sum_probs=151.4
Q ss_pred cceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEE
Q 003331 477 SPLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYW 552 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w 552 (829)
.|.-+..+.++.+|+++. ++.|..+|.. ++... +..+. .......+..+ +.+|+++. ++.|+.+|.. |+..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~~-g~~~- 95 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSL-GDIWFTENGANKIGKLSKK-GGFT- 95 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEE-
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCC-CCEEEEecCCCeEEEECCC-CCeE-
Confidence 344444466788999884 6789999988 77653 33332 12223344433 56888876 5789999977 7764
Q ss_pred EEecC--CeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEe-eccCCcccccceeecCCCEEEEEec-CCeEEEE
Q 003331 553 TFQTC--GEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAI 627 (829)
Q Consensus 553 ~~~~~--~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~ 627 (829)
.+... ........++ .++.+|+++. ++.|+.+|.+ |+.... ............++. ++.+|+++. ++.|+.+
T Consensus 96 ~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEE
T ss_pred EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEE
Confidence 23322 2222233333 4567888765 6789999987 766532 221222223344554 355888876 5789999
Q ss_pred EccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEE-eecCCceeecCcccccCCCeEEE
Q 003331 628 SVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWR-CRTGGPIFAGPCTSFALPSQVLI 703 (829)
Q Consensus 628 ~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~ 703 (829)
+. + |+... +.... .......+. .++.+|+++. .+.|+.++.+|+.... ...... ....+..+.++.+|+
T Consensus 173 ~~-~--g~~~~-~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~--~~~~i~~d~~g~l~v 245 (300)
T 2qc5_A 173 TN-T--GKLEE-YPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTTGEISEYDIPTPNA--RPHAITAGKNSEIWF 245 (300)
T ss_dssp CT-T--CCEEE-EECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTTCCEEEEECSSTTC--CEEEEEECSTTCEEE
T ss_pred CC-C--CcEEE-eeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCC--CceEEEECCCCCEEE
Confidence 98 3 54432 22211 112233333 3567888875 4579999966665432 221111 111233455778999
Q ss_pred Eee-CCeEEEEeCCCCcEEEEEecCCc--cccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 704 CSR-NGSIYSFEQESGNLLWEYSVGDP--ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 704 ~t~-~g~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++. ++.|+.+|. +|++. .+..... .......+ .++.+|+++.+ +|+.+|++
T Consensus 246 ~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~------------~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 246 TEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFG------------KDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp EETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEEC------------TTSCEEEECSS-EEEEEEEC
T ss_pred eccCCCeEEEECC-CCcEE-EEECCccCCccceeEeC------------CCCCEEEEccC-ceEEeCCC
Confidence 985 478999998 57654 2322211 11111112 25779999875 89888764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-09 Score=118.39 Aligned_cols=231 Identities=11% Similarity=0.043 Sum_probs=154.1
Q ss_pred CeEEEEecCCCcEEEEECCC----------CcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcE----
Q 003331 486 DIYLFVGSHSHKFICADAKR----------SSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDI---- 550 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t----------g~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~---- 550 (829)
...+++++.+|.|+.||..+ ++....+..+.....+..+.+++. .+++|+.||.|+.||..++..
T Consensus 141 ~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 141 ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 45788889999999999876 566666666655555677777766 899999999999999887422
Q ss_pred ---EEEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCCC---eEEEeeccCCcccccceeecCCC-EEEEEecCC
Q 003331 551 ---YWTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSG 622 (829)
Q Consensus 551 ---~w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g 622 (829)
...+..+........+.+ ....+++++.++.|+.||..++ +.+..+..+........+.+++. .+++++.+|
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg 300 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC
Confidence 122333333333444554 5677888999999999999887 45666655555555566666555 577899999
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeeeeecCC-EEEEEeeCCeEEEEc-CC-C-------------CEEEEeecCC-
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCITSANR-HVICCLVDGHVVALD-SS-G-------------SIIWRCRTGG- 685 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~-~l~~~~~~g~i~~~d-~~-g-------------~~~w~~~~~~- 685 (829)
.|..||..+. +..+..+........+..+.+++. .++.++.++.|.+|| .+ + +++.......
T Consensus 301 ~v~vwd~~~~-~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 379 (430)
T 2xyi_A 301 TVALWDLRNL-KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379 (430)
T ss_dssp EEEEEETTCT-TSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS
T ss_pred eEEEEeCCCC-CCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC
Confidence 9999998862 233444444444445667776664 577888899999999 54 2 4444433222
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
.+.... ........+..++.+|.|..|+..++
T Consensus 380 ~v~~~~-~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 380 KISDFS-WNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEE-ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CceEEE-ECCCCCCEEEEEECCCCEEEeEcccc
Confidence 222221 11111226777888999999987654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-08 Score=104.08 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred CCCeEEEEecCC-------CcEEEEECCCCcE--------EEEEEcCCceeeceEEeeCCcEEEEEEe-----------C
Q 003331 484 DSDIYLFVGSHS-------HKFICADAKRSSV--------LWEIKLEGRIECSAAVLADFSQVVVGCY-----------K 537 (829)
Q Consensus 484 d~~~~l~igs~~-------g~l~~~d~~tg~~--------~w~~~~~~~~~~~~~~~~~~~~v~vg~~-----------d 537 (829)
+++..|..|+.+ +.|..|+...+.. .....+...-....++..+++.+++|+. |
T Consensus 24 ~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d 103 (365)
T 4h5i_A 24 NNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGN 103 (365)
T ss_dssp ETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCC
T ss_pred CCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCC
Confidence 345566665432 2478887665431 1222222211112345556667777754 4
Q ss_pred CEEEEEEcCCCc--EEEEE--ecC-----CeeeeeeeeecCCCEEEEe--ccCCeEEEEEcCCCeEEEeeccCCcccccc
Q 003331 538 GKIYFLDYLTGD--IYWTF--QTC-----GEVKCQPVVDAPRQLIWCG--SHDHNLYALDFRNYRCVYKLPCGGSIFGSP 606 (829)
Q Consensus 538 g~l~~~d~~tG~--~~w~~--~~~-----~~~~~~~~~~~~~~~i~~g--s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~ 606 (829)
+.+..|+..++. ..... ... ........+++++..+.++ +.|+.|+.||.++++++..+...+. ..+.
T Consensus 104 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-V~~v 182 (365)
T 4h5i_A 104 KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-VKDL 182 (365)
T ss_dssp CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-CCEE
T ss_pred CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-eEEE
Confidence 556666654432 22111 110 1112234566677776654 4689999999999999988875544 4456
Q ss_pred eeecCCCEEEEEecCCeEEEEEccCCCceEEEeec--cCCcceeeeeeeecCCEEEEEeeCC----eEEEEc-CCCCEE-
Q 003331 607 AIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE--LEVPAFASLCITSANRHVICCLVDG----HVVALD-SSGSII- 678 (829)
Q Consensus 607 ~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~--~~~~~~~s~~~~~~~~~l~~~~~~g----~i~~~d-~~g~~~- 678 (829)
.+.+++..+..++. +.+..|+..+ +..+.... .....+.+..+.+++..++.++.++ .+..++ ..+...
T Consensus 183 ~fspdg~~l~s~s~-~~~~~~~~~~--~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~ 259 (365)
T 4h5i_A 183 HFSTDGKVVAYITG-SSLEVISTVT--GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSV 259 (365)
T ss_dssp EECTTSSEEEEECS-SCEEEEETTT--CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEE
T ss_pred EEccCCceEEeccc-eeEEEEEecc--CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecc
Confidence 67776777777764 4577888776 55443322 2233445677788888888888776 355666 444321
Q ss_pred ---EEeec-CCceeecCcccccC-CCeEEEEeeCCeEEEEeCCCCcEEEEEe-c-CCccccccccccccccccccccCCC
Q 003331 679 ---WRCRT-GGPIFAGPCTSFAL-PSQVLICSRNGSIYSFEQESGNLLWEYS-V-GDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 679 ---w~~~~-~~~~~~~~~~~~~~-~~~i~~~t~~g~l~~~d~~tG~~~w~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
..... ...+.+.. ... +..|.+|+.|+.|..||..+++.+..+. . ...+....+. +++
T Consensus 260 ~~~~~~~~~~~~V~~~~---~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS------------pdg 324 (365)
T 4h5i_A 260 LRSKQVTNRFKGITSMD---VDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS------------PDS 324 (365)
T ss_dssp EEEEEEESSCSCEEEEE---ECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC------------TTS
T ss_pred eeeeeecCCCCCeEeEE---ECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC------------CCC
Confidence 11111 12232221 222 3467788999999999999999887753 2 2333333222 338
Q ss_pred cEEEEEccCCcEEEEEeecC
Q 003331 752 RLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~ 771 (829)
.+++.++.|++|.+||...+
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 89999999999999998643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-08 Score=106.65 Aligned_cols=265 Identities=10% Similarity=0.039 Sum_probs=168.7
Q ss_pred CeEEEEec------CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003331 486 DIYLFVGS------HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 486 ~~~l~igs------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
..++|+.. .++.++.||..+++++-++..+... ...++++++.+|+++. ++.|..||..+++
T Consensus 15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 45677654 3568999999999988776655433 6788899999999873 5679999999999
Q ss_pred EEEEEecCC------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEe-eccCCcccccceeecC-CCEEEEEe
Q 003331 550 IYWTFQTCG------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYK-LPCGGSIFGSPAIDEV-HDVLYVAS 619 (829)
Q Consensus 550 ~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~-~~~l~v~t 619 (829)
++.++.... .......++++++.+|++.. ++.|..||.++++.+.. +..++... ..+.++ ...++..+
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~--v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWS--VIPQPNRPRSFMTIC 170 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEE--EEECTTSSSEEEEEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcce--eEEcCCCCeeEEEEC
Confidence 988776532 22233456778889999864 57899999999998877 65543211 112221 23556667
Q ss_pred cCCeEEEEEccCCCceEEEeec------cC-CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE----EEeecC---
Q 003331 620 TSGRLTAISVKALPFHTLWLHE------LE-VPAFASLCITSANRHVICCLVDGHVVALD-SSGSII----WRCRTG--- 684 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~------~~-~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~----w~~~~~--- 684 (829)
.+|.+..++.+. .|+..+... .. .+. ......++..+++.+.++.++++| ..+... |.....
T Consensus 171 ~dg~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 171 GDGGLLTINLGE-DGKVASQSRSKQMFSVKDDPI--FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp TTSSEEEEEECT-TSSEEEEEECCCCSCTTTSCB--CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCcEEEEEECC-CCcEeeeccccceEcCCCCce--EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 788888777653 255442221 11 111 112234566777778889999999 544321 221110
Q ss_pred --CceeecC-ccccc-CCCeEEEEee-----------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccC
Q 003331 685 --GPIFAGP-CTSFA-LPSQVLICSR-----------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 685 --~~~~~~~-~~~~~-~~~~i~~~t~-----------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
...-..+ .+... .++.+|+... .+.|+.||.++++.+-++..+. ..... +. .
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia-~s-----------p 314 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMT-ID-----------Q 314 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEE-EE-----------T
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEE-EC-----------C
Confidence 0000000 01112 2478898765 3479999999999988887765 22222 22 2
Q ss_pred CCcEEEEEccCCcEEEEEeecC
Q 003331 750 IDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++|++.. +.|.+||..++
T Consensus 315 dg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 315 QRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEECS-SCEEEEECSSS
T ss_pred CCCEEEEeCC-CeEEEEECCCC
Confidence 3778998886 89999998865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5e-09 Score=108.94 Aligned_cols=230 Identities=8% Similarity=0.018 Sum_probs=143.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE--EEEEEcCCceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV--LWEIKLEGRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~--~w~~~~~~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~ 558 (829)
++..|..|+.|+.|..||..+++. +..+..+.....+..+.. ++..+++++.|+.|..||..+|+ ....+..+.
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 103 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCS
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCC
Confidence 467899999999999999988753 345555555455666654 36789999999999999999884 344444343
Q ss_pred eeeeeeeeecC--CCEEEEeccCCeEEEEEcCCCeEE---EeeccCCcccccceeecC-----------------CCEEE
Q 003331 559 EVKCQPVVDAP--RQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSPAIDEV-----------------HDVLY 616 (829)
Q Consensus 559 ~~~~~~~~~~~--~~~i~~gs~~g~l~~~d~~tg~~~---w~~~~~~~~~~~~~~~~~-----------------~~~l~ 616 (829)
.......+.++ +..+.+|+.|+.++.||..++... .....+........+.++ +..++
T Consensus 104 ~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 183 (316)
T 3bg1_A 104 SSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFA 183 (316)
T ss_dssp SCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEE
T ss_pred CceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEE
Confidence 33334455544 567889999999999998875321 111111111222222221 24678
Q ss_pred EEecCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecC----CEEEEEeeCCeEEEEc-CCCC-EEE---Ee-ecCC
Q 003331 617 VASTSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSAN----RHVICCLVDGHVVALD-SSGS-IIW---RC-RTGG 685 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~----~~l~~~~~~g~i~~~d-~~g~-~~w---~~-~~~~ 685 (829)
.++.|+.|..||..+.. .+.+..+..+.....+..+.+++ ..++.++.|+.|.+|+ .++. ..| .. ....
T Consensus 184 sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 263 (316)
T 3bg1_A 184 SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND 263 (316)
T ss_dssp CCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS
T ss_pred EecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC
Confidence 88889999999987410 12333333333334455565554 6789999999999998 5421 001 11 1122
Q ss_pred ceeecCcccccCCCeEEEEeeCCeEEEEeCC
Q 003331 686 PIFAGPCTSFALPSQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 686 ~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~ 716 (829)
.+....+.+ .+..|..++.||.|..|+..
T Consensus 264 ~v~~v~~sp--~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 264 VVWHVSWSI--TANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEECT--TTCCEEEEESSSCEEEEEEC
T ss_pred cEEEEEEcC--CCCEEEEEcCCCeEEEEEEC
Confidence 333322111 23467788899999999965
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1e-08 Score=111.02 Aligned_cols=255 Identities=13% Similarity=0.034 Sum_probs=151.6
Q ss_pred cEEEEEC--CCCcEEEE--EEcCCceeeceEEe--------------eCCcEEEEEEeC------CEEEEEEcCCCcEEE
Q 003331 497 KFICADA--KRSSVLWE--IKLEGRIECSAAVL--------------ADFSQVVVGCYK------GKIYFLDYLTGDIYW 552 (829)
Q Consensus 497 ~l~~~d~--~tg~~~w~--~~~~~~~~~~~~~~--------------~~~~~v~vg~~d------g~l~~~d~~tG~~~w 552 (829)
.++.||. .+|+.+.. +..+.......... ..+..++..+.+ +.|+.||..++...
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~- 172 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQF- 172 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCE-
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCE-
Confidence 7999999 99997744 33332111011110 013455554443 68999998755543
Q ss_pred EEecCCeeeeeeeeecCCCEEEEeccCC---eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCC--eEEE
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSG--RLTA 626 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~~g---~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g--~l~~ 626 (829)
.+..+......+.+.+++..|++++.++ .|+.||..+|+...... .......+.+++++..|+ .++.++ .|+.
T Consensus 173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~-~~~~~~~~~~spdg~~la~~~~~~g~~~i~~ 251 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS-FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 251 (415)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec-CCCcccCEEEcCCCCEEEEEEecCCCceEEE
Confidence 3333344456677888888888887764 89999999998764332 333455677887777776 445444 4999
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-C--eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEE
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-G--HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVL 702 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g--~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~ 702 (829)
||+.+ ++.. ...........+.+.+++..+++++.+ + .|+.+| .+++.. ...........+.... .+..|+
T Consensus 252 ~d~~~--~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~sp-dG~~l~ 326 (415)
T 2hqs_A 252 MDLAS--GQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSS-DGKFMV 326 (415)
T ss_dssp EETTT--CCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECT-TSSEEE
T ss_pred EECCC--CCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECC-CCCEEE
Confidence 99887 6543 333333344567778888888888764 3 688889 666543 2222221111121111 234566
Q ss_pred EEeeC---CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC---cEEEEEeecC
Q 003331 703 ICSRN---GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG---SIHILRVNLD 771 (829)
Q Consensus 703 ~~t~~---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G---~l~~~d~~~~ 771 (829)
+++.+ ..|+.||..+++... +.....+ ..+. ..+++..+++++.++ .|++||.+++
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~-~~~~-----------~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQV-LSSTFLD-ETPS-----------LAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEEE-CCCSSSC-EEEE-----------ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred EEECcCCceEEEEEECCCCCEEE-ecCCCCc-CCeE-----------EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 66654 579999999988742 2211111 1111 123367777777666 6999987643
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.1e-12 Score=142.41 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred ccCCCCCC----cchhhhccccccccc---cccccccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHH
Q 003331 255 LPMTSSGK----VDYASLSASTSFTIS---AQHDADETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVA 327 (829)
Q Consensus 255 lP~t~~GK----i~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~ 327 (829)
-|+|++|| +||+++..+...... ........|.+++|+.|+++|+++|+++.|+.+||||++|||||+|++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~e~~l~~~w~~~l~~~~i~~~~~ff~lGg~Sl~a~~l~ 83 (508)
T 4f6l_B 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRDPSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVV 83 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcCCCCCCcccHHHHhcCChhhhcccCCccCCCCCCCCHHHHHHHHHHHHHhCCCCCCCCCChHHcCchHHHHHHHH
Confidence 46666554 555555443222111 11223446778899999999999999999999999999999999999998
Q ss_pred HHc-----CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 328 HNL-----GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 328 ~~l-----~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+| .+++..+|++||++.||.+|.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~t~~~la~~~~~~~ 115 (508)
T 4f6l_B 84 SHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQ 115 (508)
T ss_dssp --------------------------------
T ss_pred HHHHHcCCCccHHHHhcCCcHHHHHHHHHhhc
Confidence 776 378899999999999999998754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-09 Score=109.97 Aligned_cols=277 Identities=12% Similarity=0.049 Sum_probs=171.5
Q ss_pred eCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCC
Q 003331 526 ADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNY 590 (829)
Q Consensus 526 ~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg 590 (829)
.++..+|+.+.. +.|..+|..|++++.++..+... ...++++++.+|++.. ++.|..+|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 355677877653 58999999999999999887654 5677888899999863 568999999999
Q ss_pred eEEEeeccC-------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC-CEEE
Q 003331 591 RCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN-RHVI 660 (829)
Q Consensus 591 ~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~-~~l~ 660 (829)
+.+..+..+ +..-....++++++++|++.. ++.|.++|..+ ++.+.++..... ..+.+.+ ..++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g~----~~~~p~g~~~~v 233 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPDC----YHIFPASPTVFY 233 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSE----EEEEEEETTEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC--CeEEEEEEcCCc----eeeccCCCcEEE
Confidence 998887664 122234567888899999874 57899999988 888777765432 1222222 3444
Q ss_pred EEeeCCeEEEEc-CCCCEEEEee----cCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE----EEEecCCcc
Q 003331 661 CCLVDGHVVALD-SSGSIIWRCR----TGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL----WEYSVGDPI 730 (829)
Q Consensus 661 ~~~~~g~i~~~d-~~g~~~w~~~----~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~----w~~~~~~~~ 730 (829)
..+.+|.+..++ .+++..+... ... +++.... ....++.+|+.+..|.++.+|..++... |.......+
T Consensus 234 ~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~-~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i 312 (426)
T 3c75_H 234 MNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPA-FSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAER 312 (426)
T ss_dssp EEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCE-ECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTG
T ss_pred EEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEee-ecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccc
Confidence 456678888888 7777765421 111 1111100 0112467888888899999998766532 221100100
Q ss_pred ccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 800 (829)
.. ........ ......+++++|+... ++.|.++|..+. +.......+.......
T Consensus 313 ~~-g~~p~g~~--~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~-------------kvv~~I~vg~~P~gia 376 (426)
T 3c75_H 313 AD-DWRPGGWQ--QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG-------------ERINKIELGHEIDSIN 376 (426)
T ss_dssp GG-TEEECSSS--CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEEEEEEECEEE
T ss_pred cc-ccccCCce--eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC-------------eEEEEEECCCCcCeEE
Confidence 00 00000000 0011123678888753 346999998865 4444444333211111
Q ss_pred eE-ECC-EEEEeee-CCeEEEEeccccccc
Q 003331 801 VM-IGG-RVFVGCR-DDYIYCIALETQHLE 827 (829)
Q Consensus 801 ~~-~~~-~l~vg~~-~g~l~~~d~~tg~~~ 827 (829)
+. ++. .+|+... ++.|..+|..++++.
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 11 345 6888774 899999999998864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.3e-08 Score=102.25 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=157.7
Q ss_pred CeEEEEe-cCCCcEEEEECC-CCc--EEEEEEcCCceeeceEEeeCCcEEEEEEeC-CEEEEEEcC--CCcEE--EEEec
Q 003331 486 DIYLFVG-SHSHKFICADAK-RSS--VLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYL--TGDIY--WTFQT 556 (829)
Q Consensus 486 ~~~l~ig-s~~g~l~~~d~~-tg~--~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-g~l~~~d~~--tG~~~--w~~~~ 556 (829)
+..+|++ +.++.|+.||.. +|+ .+........ .....+++++..+++++.+ +.|..|+.. +|+.. ..+..
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ-VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 82 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC-CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCC-CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence 4567777 568899999984 453 3333333332 3356788888889999876 899998876 67643 33443
Q ss_pred CCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC---CeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN---YRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t---g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
+. ......+.+++..+|+++. ++.++.||..+ ++......... ....+.+++++..+|++. .++.++.|++.+
T Consensus 83 ~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 83 PG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 33 2334456667777877765 77899999843 34444443332 344566777777898887 788999999875
Q ss_pred CCceEE--E--eeccC-CcceeeeeeeecCCEEEEEe-eCCeEEEEc-C--CCCEEE--Eee-cCCc---eeecCccccc
Q 003331 632 LPFHTL--W--LHELE-VPAFASLCITSANRHVICCL-VDGHVVALD-S--SGSIIW--RCR-TGGP---IFAGPCTSFA 696 (829)
Q Consensus 632 ~~g~~~--w--~~~~~-~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~--~g~~~w--~~~-~~~~---~~~~~~~~~~ 696 (829)
.++.. . ..... ........+.+++..+++.+ .++.+..++ . +|+... ... .... ......+...
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 239 (343)
T 1ri6_A 161 -DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT 239 (343)
T ss_dssp -TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred -CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence 13322 1 11111 11223456677778787776 678899998 3 354321 111 1110 0000012222
Q ss_pred CCC-eEEEEe-eCCeEEEEeCC--CCcEE--EEEecCCccccccccccccccccccccCCCcEEEEEc-cCCcEEEEEee
Q 003331 697 LPS-QVLICS-RNGSIYSFEQE--SGNLL--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVN 769 (829)
Q Consensus 697 ~~~-~i~~~t-~~g~l~~~d~~--tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~ 769 (829)
.++ .+|++. .++.|..||.. +++.. ........... ... ..++..+++++ .++.|.+|+.+
T Consensus 240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~-----------s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG-FNV-----------DHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC-EEE-----------CTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccce-EEE-----------CCCCCEEEEecCCCCeEEEEEEc
Confidence 333 677665 57889999987 44432 23333222111 111 22367788887 57889998665
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-08 Score=103.37 Aligned_cols=228 Identities=6% Similarity=-0.054 Sum_probs=139.2
Q ss_pred eceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeec
Q 003331 520 CSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 520 ~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~ 597 (829)
.++++.++++ .+|+++.++.|+.||..++ ...+...........++. ++.+|+++. ++.|+.||+++|+......
T Consensus 31 eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~ 107 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIAD 107 (296)
T ss_dssp EEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEEC
T ss_pred cCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEee
Confidence 3677777877 6778888899999998887 333433333333344444 455777765 4789999998998765432
Q ss_pred c-CCc---ccccceeecCCCEEEEE-----e-------------cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeec
Q 003331 598 C-GGS---IFGSPAIDEVHDVLYVA-----S-------------TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSA 655 (829)
Q Consensus 598 ~-~~~---~~~~~~~~~~~~~l~v~-----t-------------~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~ 655 (829)
. .+. ......+++ ++.+|++ + ..+.|+.++.+ |+..... .........++.++
T Consensus 108 ~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~-~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 108 SFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD---GTLSAPI-RDRVKPNGLAFLPS 182 (296)
T ss_dssp EETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT---SCEEEEE-CCCSSEEEEEECTT
T ss_pred ccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC---CCEEEee-cCCCCCccEEECCC
Confidence 2 111 123445555 5678884 3 13578888765 3332211 11122245566667
Q ss_pred CCEEEEEeeCCeEEEEc-C-CCCE-E--EEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003331 656 NRHVICCLVDGHVVALD-S-SGSI-I--WRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 656 ~~~l~~~~~~g~i~~~d-~-~g~~-~--w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
++.++..+.++.|++++ . +|++ . ..+... ......+..+.+|.+|+++ +++|++||++ |+.+..+..+..+
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~--~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~~ 258 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE--PGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQTT 258 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS--SSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSCC
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC--CCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCCc
Confidence 77775556678999999 4 6765 1 122111 0011123456688999999 8899999986 8877776655442
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
....+.. .+++.+|+++.+ +|+.++.+++
T Consensus 259 ~~~~f~~-----------~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 259 SNLCFGG-----------PEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CEEEEES-----------TTSCEEEEEETT-EEEEEECSCC
T ss_pred eeEEEEC-----------CCCCEEEEEcCC-eEEEEEcccc
Confidence 2211111 126789999865 6999988765
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-09 Score=117.80 Aligned_cols=226 Identities=13% Similarity=0.031 Sum_probs=139.7
Q ss_pred EEEEecCCCcEEEEECCCCcEEEE----EEcCCceeeceEEeeC------CcEEEEEEeCCEEEEEEcCCCcEE------
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWE----IKLEGRIECSAAVLAD------FSQVVVGCYKGKIYFLDYLTGDIY------ 551 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~----~~~~~~~~~~~~~~~~------~~~v~vg~~dg~l~~~d~~tG~~~------ 551 (829)
.+..++.|+.|..||..+++..+. +..+........+.++ ++.|.+++.|+.|..||..+++..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 355577889999999988875332 2222222334556554 468999999999999999877421
Q ss_pred -----EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe-EEEeeccCCcccccc--eeecCC-CEEEEEecCC
Q 003331 552 -----WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR-CVYKLPCGGSIFGSP--AIDEVH-DVLYVASTSG 622 (829)
Q Consensus 552 -----w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~-~~w~~~~~~~~~~~~--~~~~~~-~~l~v~t~~g 622 (829)
..+..+.....+..+.+ ++.|++|+.||.|..||..+++ +...+..+...+.+. ...+++ ..++.++.|+
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~ 333 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG 333 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS
T ss_pred ecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC
Confidence 12322333333344443 4689999999999999998773 333343343333333 234444 5788899999
Q ss_pred eEEEEEccCCCceEEEeeccCCc--ceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC-CceeecCcccccCC
Q 003331 623 RLTAISVKALPFHTLWLHELEVP--AFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG-GPIFAGPCTSFALP 698 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~--~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~-~~~~~~~~~~~~~~ 698 (829)
.+..||+.+ ++.......... ...+..+.+++..+..++.++.|..+| .++..+..+... ..+.+..+.+ .+
T Consensus 334 tvklWD~~~--~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp--~g 409 (524)
T 2j04_B 334 YFYIFNPKD--IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR--LH 409 (524)
T ss_dssp EEEEECGGG--HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS--SC
T ss_pred eEEEEECCC--CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC--CC
Confidence 999999886 543222211111 123556777777888888899999999 888765544322 2343332211 23
Q ss_pred CeEEEEeeCCeEEEEeCCCC
Q 003331 699 SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~tG 718 (829)
..+..|+.||.|..||...+
T Consensus 410 ~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 410 PMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CBCEEEETTTEEECCBSCSS
T ss_pred CeEEEEECCCEEEEEechHh
Confidence 46788999999999997653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-08 Score=101.25 Aligned_cols=276 Identities=11% Similarity=0.021 Sum_probs=163.4
Q ss_pred eCCcEEEEEEe--CC---EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEEEcCCC
Q 003331 526 ADFSQVVVGCY--KG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYALDFRNY 590 (829)
Q Consensus 526 ~~~~~v~vg~~--dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~d~~tg 590 (829)
.++..+|+... .. .|+.||..+++++-++..+... ...++++++.+|+.. .++.+..||..++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 45567777653 22 7899999999998777655432 566777889999985 2567999999999
Q ss_pred eEEEeeccC-------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecCCE-E
Q 003331 591 RCVYKLPCG-------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSANRH-V 659 (829)
Q Consensus 591 ~~~w~~~~~-------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~~~-l 659 (829)
+.+..+..+ +..-..+.++++++.+|++.. ++.|..+| ++ ++.+.. ...... ..+.+.++. +
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~~~~~----~~~~~~~~~~~ 180 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLSSPTC----YHIHPGAPSTF 180 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcCCCce----EEEEeCCCceE
Confidence 888777654 112235567888899999874 47799999 87 777766 544322 223334433 3
Q ss_pred EEEeeCCeEEEEcCCCCEEEEeec------CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE--EEEecCCcc-
Q 003331 660 ICCLVDGHVVALDSSGSIIWRCRT------GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL--WEYSVGDPI- 730 (829)
Q Consensus 660 ~~~~~~g~i~~~d~~g~~~w~~~~------~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~--w~~~~~~~~- 730 (829)
+..+.+|.+..+|.+|+..+.... ..+++..+.... .++.+|+.+..+.++.+|..++... -.+......
T Consensus 181 ~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQAN-KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEe-cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 344457778877765666544321 111111111111 2456666667889999998766422 122111100
Q ss_pred ccccccccccccccccccCCCcEEEEEcc----------CCcEEEEEeecCccccccccccccceeeeeeccCCcccccc
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTS----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSP 800 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 800 (829)
....+....... .....+++.+|+... ++.|+++|..++ +........+... ..
T Consensus 260 ~~~~~~p~g~~~--~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~-------------~vv~~i~~g~~p~-~i 323 (373)
T 2mad_H 260 KADTWRPGGWQQ--VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-------------QTSSQISLGHDVD-AI 323 (373)
T ss_pred cccceecCceEe--EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC-------------EEEEEEECCCCcC-eE
Confidence 000000000000 001224678888754 357999998865 4444554444222 22
Q ss_pred eE--ECC-EEEEee-eCCeEEEEeccccccc
Q 003331 801 VM--IGG-RVFVGC-RDDYIYCIALETQHLE 827 (829)
Q Consensus 801 ~~--~~~-~l~vg~-~~g~l~~~d~~tg~~~ 827 (829)
.+ ++. .+|++. .++.|..+|..++++.
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 22 344 577766 3899999999998865
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-08 Score=116.34 Aligned_cols=228 Identities=11% Similarity=0.070 Sum_probs=142.0
Q ss_pred eCCCeEEEEecC-CC-----cEEEEECCCCcEEEEEEcCCc------------------------eeeceEEeeCCcEEE
Q 003331 483 KDSDIYLFVGSH-SH-----KFICADAKRSSVLWEIKLEGR------------------------IECSAAVLADFSQVV 532 (829)
Q Consensus 483 ~d~~~~l~igs~-~g-----~l~~~d~~tg~~~w~~~~~~~------------------------~~~~~~~~~~~~~v~ 532 (829)
+.++..|+.++. ++ .|+.||..+|+....+..+.. ...++.+++|++.|+
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~ 124 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL 124 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE
Confidence 335667777776 77 899999999987655543221 135678999999888
Q ss_pred EEEeCCEEEEEEcCCC---cEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-c------
Q 003331 533 VGCYKGKIYFLDYLTG---DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-I------ 602 (829)
Q Consensus 533 vg~~dg~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-~------ 602 (829)
+++. +.|+.||..+| +... +..+......+.+++++..|++++ ++.|+.||..+|+.......+.. +
T Consensus 125 ~~~~-~~i~~~d~~~~~~~~~~~-l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~ 201 (741)
T 2ecf_A 125 FPLG-GELYLYDLKQEGKAAVRQ-LTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAE 201 (741)
T ss_dssp EEET-TEEEEEESSSCSTTSCCB-CCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCC
T ss_pred EEeC-CcEEEEECCCCCcceEEE-cccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccc
Confidence 8874 89999999888 5432 222333345567888888888776 46899999999887654433221 1
Q ss_pred ---------cccceeecCCCEEEEEecCC---------------------------------eEEEEEccCCCceEEEee
Q 003331 603 ---------FGSPAIDEVHDVLYVASTSG---------------------------------RLTAISVKALPFHTLWLH 640 (829)
Q Consensus 603 ---------~~~~~~~~~~~~l~v~t~~g---------------------------------~l~~~~~~~~~g~~~w~~ 640 (829)
...+.+++++..|++++.++ .|+.||+++. ++.....
T Consensus 202 ~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~ 280 (741)
T 2ecf_A 202 FVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ-AQTQWID 280 (741)
T ss_dssp HHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT-CCCEEEC
T ss_pred eeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC-CceEEec
Confidence 24567777778788776554 6777776530 2222211
Q ss_pred c--cCCcceeeeeeeecCCEEEEEee-----CCeEEEEc-CCCCEEEEeecCCc----eeecCcccccCCC-eEEEEeeC
Q 003331 641 E--LEVPAFASLCITSANRHVICCLV-----DGHVVALD-SSGSIIWRCRTGGP----IFAGPCTSFALPS-QVLICSRN 707 (829)
Q Consensus 641 ~--~~~~~~~s~~~~~~~~~l~~~~~-----~g~i~~~d-~~g~~~w~~~~~~~----~~~~~~~~~~~~~-~i~~~t~~ 707 (829)
. ..........+ +++..+++... +..|+.+| .+|+.......... ....+. ...++ .++.++.+
T Consensus 281 ~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~--~spdg~~~~~~~~~ 357 (741)
T 2ecf_A 281 LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR--FLDDGSILWSSERT 357 (741)
T ss_dssp CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE--ECTTSCEEEEECTT
T ss_pred CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE--ECCCCeEEEEecCC
Confidence 1 11223356677 88888887764 45789999 88876544332211 011111 22234 45555666
Q ss_pred C--eEEEEeCCC
Q 003331 708 G--SIYSFEQES 717 (829)
Q Consensus 708 g--~l~~~d~~t 717 (829)
| .|+.+|..+
T Consensus 358 g~~~l~~~~~~~ 369 (741)
T 2ecf_A 358 GFQHLYRIDSKG 369 (741)
T ss_dssp SSCEEEEECSSS
T ss_pred CccEEEEEcCCC
Confidence 6 567777543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=104.41 Aligned_cols=223 Identities=10% Similarity=0.015 Sum_probs=135.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEec-CCee---ee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQT-CGEV---KC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~-~~~~---~~ 562 (829)
.+|+++.++.|+.||+.++ . -.+..+........+..++ .+|+++. ++.|+.||.++|+....... .+.. ..
T Consensus 42 l~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 118 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ-L-SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN 118 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC-E-EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC
T ss_pred EEEEeCCCCEEEEEECCCC-e-EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC
Confidence 6888888899999999887 3 2344343333345565554 5777765 47899999989987654322 1111 11
Q ss_pred eeeeecCCCEEEE-----ec-------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 563 QPVVDAPRQLIWC-----GS-------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 563 ~~~~~~~~~~i~~-----gs-------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
...++ .++.+|+ |+ ..+.|+.+|.. |+...... .......+++++++..++..+.++.|
T Consensus 119 ~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~gi~~s~dg~~lv~~~~~~~i 195 (296)
T 3e5z_A 119 DVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-DRVKPNGLAFLPSGNLLVSDTGDNAT 195 (296)
T ss_dssp CEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-CCSSEEEEEECTTSCEEEEETTTTEE
T ss_pred CEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec-CCCCCccEEECCCCCEEEEeCCCCeE
Confidence 23344 4567888 43 14589999977 66543222 22223445667666777666667899
Q ss_pred EEEEccCCCceE---EEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 625 TAISVKALPFHT---LWLHELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 625 ~~~~~~~~~g~~---~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
+.|+.+. +|+. ...+..........++. .++.+|+++ +++|.+||.+|+.+..+.....+.+. +.....++.|
T Consensus 196 ~~~~~~~-~g~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~-~~~v~~~~~~g~~~~~~~~~~~~~~~-~f~~~d~~~L 271 (296)
T 3e5z_A 196 HRYCLNA-RGETEYQGVHFTVEPGKTDGLRVD-AGGLIWASA-GDGVHVLTPDGDELGRVLTPQTTSNL-CFGGPEGRTL 271 (296)
T ss_dssp EEEEECS-SSCEEEEEEEECCSSSCCCSEEEB-TTSCEEEEE-TTEEEEECTTSCEEEEEECSSCCCEE-EEESTTSCEE
T ss_pred EEEEECC-CCcCcCCCeEeeCCCCCCCeEEEC-CCCCEEEEc-CCeEEEECCCCCEEEEEECCCCceeE-EEECCCCCEE
Confidence 9999862 2543 11111111111233343 456799998 89999999668887776654431111 1111234579
Q ss_pred EEEeeCCeEEEEeCCCCcEE
Q 003331 702 LICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 702 ~~~t~~g~l~~~d~~tG~~~ 721 (829)
|+++.+ ++++++.+++++.
T Consensus 272 ~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 272 YMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp EEEETT-EEEEEECSCCBCC
T ss_pred EEEcCC-eEEEEEccccccc
Confidence 998865 6999999988764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-08 Score=102.28 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=139.2
Q ss_pred ceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEecCC------eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCe
Q 003331 521 SAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCG------EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYR 591 (829)
Q Consensus 521 ~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~ 591 (829)
..++..++ .+|++ ..++.|+.||.. |+.++.+...+ .......+.+.++.+|++.. ++.|+.|| .+|+
T Consensus 34 ~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~ 110 (286)
T 1q7f_A 34 GVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 110 (286)
T ss_dssp EEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred eEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCc
Confidence 34455554 46666 467899999965 88877764321 11223344346788998874 78999999 6788
Q ss_pred EEEeeccCC-cccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEe-eCC
Q 003331 592 CVYKLPCGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCL-VDG 666 (829)
Q Consensus 592 ~~w~~~~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~-~~g 666 (829)
.+..+.... .......++. ++.+|++. .++.|+.|+.+ |+.++.+.... ......++.. ++.+|++. .++
T Consensus 111 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~ 185 (286)
T 1q7f_A 111 FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAH 185 (286)
T ss_dssp EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGT
T ss_pred EEEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCC---CCEEEEeCCCCccCCcEEEEECC-CCCEEEEECCCC
Confidence 877664332 2223345555 35677775 46789999965 56666553221 1123344443 46688775 478
Q ss_pred eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-C-eEEEEeCCCCcEEEEEecCCccc--ccccccccccc
Q 003331 667 HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-G-SIYSFEQESGNLLWEYSVGDPIT--ASAYIDEHLQL 742 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-g-~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~ 742 (829)
.|.++|.+|+.++.+...+.......+..+.++.+|+++.. + .|..||. +|+.++.+....... ....++.
T Consensus 186 ~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~---- 260 (286)
T 1q7f_A 186 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD---- 260 (286)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET----
T ss_pred EEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC----
Confidence 99999977777776654321111112334557889998754 3 8999995 578777665433211 1111111
Q ss_pred ccccccCCCcEEEEEccCCcEEEEEee
Q 003331 743 KLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.+|+++.++.|.+|+..
T Consensus 261 --------~g~l~vs~~~~~v~v~~~~ 279 (286)
T 1q7f_A 261 --------DGSVVLASKDYRLYIYRYV 279 (286)
T ss_dssp --------TTEEEEEETTTEEEEEECS
T ss_pred --------CCcEEEECCCCeEEEEEcc
Confidence 5567877788889999764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-08 Score=102.28 Aligned_cols=268 Identities=11% Similarity=0.057 Sum_probs=165.1
Q ss_pred CCcEEEEEEe------CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc----------CCeEEEEEcCCC
Q 003331 527 DFSQVVVGCY------KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH----------DHNLYALDFRNY 590 (829)
Q Consensus 527 ~~~~v~vg~~------dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~----------~g~l~~~d~~tg 590 (829)
++..+|+... |+.|+.||..+|+++-++..+... ...++++++.+|+++. ++.|..||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 4567787652 679999999999998777655433 5677788889999863 457999999999
Q ss_pred eEEEeeccC------CcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe-eccCCcceeeeeeeecC-CEEE
Q 003331 591 RCVYKLPCG------GSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL-HELEVPAFASLCITSAN-RHVI 660 (829)
Q Consensus 591 ~~~w~~~~~------~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~-~~~~~~~~~s~~~~~~~-~~l~ 660 (829)
+.+..+... +.......+++++..+|++.. ++.|.+||.++ ++.+.. ...... ......+.+ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~~~~i~~~~~--~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK--GDYVEDVTAAAGC--WSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT--TEEEEEEGGGTTE--EEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC--CcEEEEEecCCCc--ceeEEcCCCCeeEE
Confidence 988877653 223345567877889999875 46899999988 777665 544322 112223332 3555
Q ss_pred EEeeCCeEEEEc--CCCCEEEEeec------CC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE--EEecCCc
Q 003331 661 CCLVDGHVVALD--SSGSIIWRCRT------GG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW--EYSVGDP 729 (829)
Q Consensus 661 ~~~~~g~i~~~d--~~g~~~w~~~~------~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w--~~~~~~~ 729 (829)
..+.+|.+..++ .+|+..+.... +. +++... ...+..+++.+.++.++.+|...++..- .+.....
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~ 244 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAP---ALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLND 244 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCC---EECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEe---cccCCEEEEEeCCCeEEEEEecCCCceecccccccCc
Confidence 566788888777 35776643221 11 111110 1123467777888999999987654321 1111110
Q ss_pred ----cccccccccccccccccccCCCcEEEEEcc-----------CCcEEEEEeecCccccccccccccceeeeeeccCC
Q 003331 730 ----ITASAYIDEHLQLKLESCLSIDRLVCICTS-----------SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQG 794 (829)
Q Consensus 730 ----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (829)
....+..... .....+++.+|+... .+.|++||..++ +.........
T Consensus 245 ~~~~~~~~p~g~~~-----~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------------~~v~~i~~~~ 306 (361)
T 2oiz_A 245 EDKAKNWVPGGYNL-----VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------------QRVARIPGRD 306 (361)
T ss_dssp HHHHTTCEECCSSC-----EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-------------EEEEEEECTT
T ss_pred cccccccccCCeeE-----EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-------------cEEEEEecCC
Confidence 0000000000 001223678888754 347999998865 4455555444
Q ss_pred cccccceE--ECCEEEEeeeCCeEEEEecccc
Q 003331 795 DIFSSPVM--IGGRVFVGCRDDYIYCIALETQ 824 (829)
Q Consensus 795 ~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg 824 (829)
.....+ ++..||+++. +.|..||.+++
T Consensus 307 --p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 --ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp --CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred --eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 222233 3568888886 99999999999
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-08 Score=107.21 Aligned_cols=214 Identities=13% Similarity=0.093 Sum_probs=139.9
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC---EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
+.|+.||..+++.. .+..+.....++.+++++..++.++.++ .|+.||..+|+..... ........+.+.+++..
T Consensus 159 ~~i~i~d~~g~~~~-~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCE-EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcccCEEEcCCCCE
Confidence 68999998755543 3333333456788999999999888775 8999999999886433 33334556778877776
Q ss_pred EE-EeccCC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-C--eEEEEEccCCCceEEEeeccCCcc
Q 003331 573 IW-CGSHDH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-G--RLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 573 i~-~gs~~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-g--~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
|+ +++.++ .|+.||..+++.. .+..+......+.+++++..|++++.+ + .|+.+|..+ ++.. ........
T Consensus 237 la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~~~-~l~~~~~~ 312 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQ-RITWEGSQ 312 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCE-ECCCSSSE
T ss_pred EEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CCEE-EEecCCCc
Confidence 66 555554 4999999998874 333334445567777777888877753 4 688899886 5432 22222233
Q ss_pred eeeeeeeecCCEEEEEeeC---CeEEEEc-CCCCEEEEeecCCceeecCcccccCC-CeEEEEeeCC---eEEEEeCCCC
Q 003331 647 FASLCITSANRHVICCLVD---GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALP-SQVLICSRNG---SIYSFEQESG 718 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~---g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~-~~i~~~t~~g---~l~~~d~~tG 718 (829)
...+.+++++..+++++.+ ..|+.+| .+|+.. .......+. .+. ...+ ..|++++.++ .|+.||..++
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~-~~~--~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDE-TPS--LAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCE-EEE--ECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcC-CeE--EcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 3566778888888888764 4799999 777763 232222111 111 2223 4566766665 7999998744
Q ss_pred c
Q 003331 719 N 719 (829)
Q Consensus 719 ~ 719 (829)
.
T Consensus 389 ~ 389 (415)
T 2hqs_A 389 F 389 (415)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-08 Score=106.28 Aligned_cols=187 Identities=11% Similarity=0.035 Sum_probs=137.7
Q ss_pred eeCCCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--C
Q 003331 482 LKDSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--C 557 (829)
Q Consensus 482 ~~d~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~ 557 (829)
++.++..+.+++ .|+.|+.||+.+++.+..+..+.. ..+..+++++..+.+++ ++.+..|+..+|+.+..... +
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~-V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~ 218 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGE-VKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDK 218 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSC-CCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCT
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCc-eEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCC
Confidence 344555665544 678999999999999988775554 35678889988888887 55688888888887654322 3
Q ss_pred CeeeeeeeeecCCCEEEEeccCC----eEEEEEcCCCeEEE----eeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDH----NLYALDFRNYRCVY----KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g----~l~~~d~~tg~~~w----~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
........+.+++..+++++.++ .++.||...+...- .+..+.....+..+++++..|.+++.|+.|..||.
T Consensus 219 ~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 219 NWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL 298 (365)
T ss_dssp TEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC
Confidence 44445556677777888887776 57788877765422 22223334456667787889999999999999999
Q ss_pred cCCCceEEEee-ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 630 KALPFHTLWLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 630 ~~~~g~~~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
.+ ++.+..+ ..+.....+.++++++..++.++.|++|.+|+
T Consensus 299 ~~--~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 299 KD--LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TT--TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CC--CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 88 8888765 34455557788899999999999999999998
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.1e-08 Score=99.60 Aligned_cols=261 Identities=12% Similarity=0.027 Sum_probs=144.3
Q ss_pred eEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEE-Eee
Q 003331 522 AAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCV-YKL 596 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~-w~~ 596 (829)
..+..+ +.+|+++. ++.|+.+|.. |+... +.... .......++ .++.+|+++. ++.|+.+|.. |+.. +..
T Consensus 25 i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~ 99 (300)
T 2qc5_A 25 ITSSED-GKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSKK-GGFTEYPL 99 (300)
T ss_dssp EEECTT-SCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred eeECCC-CCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEEC-CCCCEEEEecCCCeEEEECCC-CCeEEecC
Confidence 344444 56888874 6899999977 77653 33221 122223333 4567888765 5789999988 6654 222
Q ss_pred ccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEE-EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcC
Q 003331 597 PCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTL-WLHELEVPAFASLCITSANRHVICCLV-DGHVVALDS 673 (829)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~-w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~ 673 (829)
.........+.++. ++.+|+++. ++.|+.++.+ |+.. +.............+.. ++.+|+++. ++.|+.++.
T Consensus 100 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 100 PQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD---GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN 174 (300)
T ss_dssp SSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT---SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT
T ss_pred CCCCCCCccceECC-CCCEEEEccCCCeEEEECCC---CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC
Confidence 21222223344454 567888776 6789999876 4443 22211112223333433 445888775 578999996
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCC
Q 003331 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
+|+... +...........+..+.++.+|+++. ++.|+.+|. +|++...... ..........+ .+
T Consensus 175 ~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d------------~~ 240 (300)
T 2qc5_A 175 TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG------------KN 240 (300)
T ss_dssp TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC------------ST
T ss_pred CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC------------CC
Confidence 666542 22211111111223445778999976 457999998 6776543211 11111111112 15
Q ss_pred cEEEEEcc-CCcEEEEEeecCccccccccccccceeeeeeccC--CcccccceEE-CCEEEEeeeCCeEEEEecc
Q 003331 752 RLVCICTS-SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ--GDIFSSPVMI-GGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 752 ~~l~~~~~-~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~-~~~l~vg~~~g~l~~~d~~ 822 (829)
+.+|+++. ++.|+++|.. +. +..+.++ .....+..+. ++.||+++.+ .|+.+|++
T Consensus 241 g~l~v~~~~~~~i~~~~~~-g~--------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~p~ 299 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITND-NT--------------IQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLNLN 299 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SC--------------EEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEEEC
T ss_pred CCEEEeccCCCeEEEECCC-Cc--------------EEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeCCC
Confidence 56888875 4789999873 21 1112222 1122233333 6889999985 89999875
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-07 Score=99.47 Aligned_cols=276 Identities=13% Similarity=0.118 Sum_probs=153.8
Q ss_pred cEEEEE-EeCCEEEEEEcC-CCc--EEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcC--CCeEE--EeeccC
Q 003331 529 SQVVVG-CYKGKIYFLDYL-TGD--IYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFR--NYRCV--YKLPCG 599 (829)
Q Consensus 529 ~~v~vg-~~dg~l~~~d~~-tG~--~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~--tg~~~--w~~~~~ 599 (829)
..+|++ ..++.|+.||.. +|+ .+..+..... .....+.+++..+|+++.+ +.+..|+.. +|+.. ..+...
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ-VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC-CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCC-CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 356666 558999999974 553 3333433333 2334566677778888776 899998876 66643 333333
Q ss_pred CcccccceeecCCCEEEEEec-CCeEEEEEccCC-CceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CC-
Q 003331 600 GSIFGSPAIDEVHDVLYVAST-SGRLTAISVKAL-PFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SS- 674 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~-~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~- 674 (829)
+ ....+.+++++..+|++.. ++.+..|+..+. .++......... ......+.+++..+++++ .++.+..|| .+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 3 3345567777778888775 778999998420 133333333222 234556777788898887 789999999 65
Q ss_pred CCEEE------EeecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCC--CCcEEEEEec---CCccccccccccccc
Q 003331 675 GSIIW------RCRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQE--SGNLLWEYSV---GDPITASAYIDEHLQ 741 (829)
Q Consensus 675 g~~~w------~~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~--tG~~~w~~~~---~~~~~~~~~~~~~~~ 741 (829)
|+... ....+..+.. +....++ .+|+++ .++.+..|+.. +|++...... +.........
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~---~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----- 233 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRH---MVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA----- 233 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEE---EEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE-----
T ss_pred CceeeecccccccCCCCCcce---EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCc-----
Confidence 76532 1112212211 1122334 577665 67889999984 4655322111 1110000000
Q ss_pred cccccccCCCcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-eCCeEE
Q 003331 742 LKLESCLSIDRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIY 817 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~-~~g~l~ 817 (829)
.......++..+|+.. .++.|.+||....... .+........+. .....+ .+..||+++ .++.+.
T Consensus 234 -~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~---------~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~ 302 (343)
T 1ri6_A 234 -ADIHITPDGRHLYACDRTASLITVFSVSEDGSV---------LSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHIS 302 (343)
T ss_dssp -EEEEECTTSSEEEEEETTTTEEEEEEECTTSCC---------EEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEE
T ss_pred -cceEECCCCCEEEEEecCCCEEEEEEEcCCCCc---------eEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEE
Confidence 0001123366777554 6889999998731000 122222222222 222222 345788888 468888
Q ss_pred EE--ecccccc
Q 003331 818 CI--ALETQHL 826 (829)
Q Consensus 818 ~~--d~~tg~~ 826 (829)
.| |.++|++
T Consensus 303 v~~~d~~~g~~ 313 (343)
T 1ri6_A 303 VYEIVGEQGLL 313 (343)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEcCCCcee
Confidence 88 5557654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-08 Score=102.40 Aligned_cols=185 Identities=11% Similarity=-0.002 Sum_probs=122.4
Q ss_pred CeEEEEec---CCCcEEEEEC-CCCcEEEEEEcCCceeeceEEee---CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 486 DIYLFVGS---HSHKFICADA-KRSSVLWEIKLEGRIECSAAVLA---DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 486 ~~~l~igs---~~g~l~~~d~-~tg~~~w~~~~~~~~~~~~~~~~---~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
++++...+ +++.|..|+. .+|+.+-....+..-.....++. ++..++.|+.|+.|..||++||+.+.++..+.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 45555553 5889999998 55887776666554333445555 66789999999999999999999999886433
Q ss_pred e---eeeeeeeecCCCEE------------EEeccCCeEEEEEcCCCeEEEeecc---CCcccccceeecCCCEEEEEec
Q 003331 559 E---VKCQPVVDAPRQLI------------WCGSHDHNLYALDFRNYRCVYKLPC---GGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 559 ~---~~~~~~~~~~~~~i------------~~gs~~g~l~~~d~~tg~~~w~~~~---~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
. ......+.+++..+ ..|+.|+.+..||+.+|+.+..+.. .+........+.++..+..++.
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT 303 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEET
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcC
Confidence 2 12222344444433 3467788999999999988754421 1111000011111245677788
Q ss_pred CCeEEEEEccCCCceEEEeeccCCc-ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 621 SGRLTAISVKALPFHTLWLHELEVP-AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~~~~-~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|+.|..||+.+ |+.+-.+..+.. ......+++++..++.|+.|+.|.+||
T Consensus 304 DgTIkIWDl~t--Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 304 SGTIAIWDLLL--GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp TSCEEEEETTT--CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCcEEEEECCC--CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 99999999998 888877754433 233467888899999999999999886
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=7.2e-08 Score=97.91 Aligned_cols=182 Identities=8% Similarity=-0.028 Sum_probs=113.8
Q ss_pred CCEEEEec---cCCeEEEEEc-CCCeEEEeeccCCccccccee---ecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 570 RQLIWCGS---HDHNLYALDF-RNYRCVYKLPCGGSIFGSPAI---DEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 570 ~~~i~~gs---~~g~l~~~d~-~tg~~~w~~~~~~~~~~~~~~---~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
++.++..+ +++.|..|+. .+|+.+-.............+ ++++..+..++.|+.|..||+++ |+.+..+..
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~tL~g 221 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKKMHI 221 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEEEEC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--CcEEEEEcC
Confidence 45555553 5899999998 558877665554433333333 33567888889999999999998 988877753
Q ss_pred CCc---ceeeeeeeecCCEE------------EEEeeCCeEEEEc-CCCCEEEEee----cCC--ceeecCcccccCCCe
Q 003331 643 EVP---AFASLCITSANRHV------------ICCLVDGHVVALD-SSGSIIWRCR----TGG--PIFAGPCTSFALPSQ 700 (829)
Q Consensus 643 ~~~---~~~s~~~~~~~~~l------------~~~~~~g~i~~~d-~~g~~~w~~~----~~~--~~~~~~~~~~~~~~~ 700 (829)
+.. .....++.+++..+ ..|+.++.+..+| .+|+.+..+. .+. ..++. ...+..
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg----~~sg~~ 297 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG----DVKDHC 297 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE----EEETTE
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc----ccCCCE
Confidence 221 11223455555444 3355678888899 8887654332 111 11110 001234
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+..++.|+.|..||..+|+.+-++..+.. +.....+ .+++.+++.|+.|++|++||.
T Consensus 298 lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vaf-----------SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 298 AAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKW-----------SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEE-----------CSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEE-----------CCCCCEEEEEECCCcEEEecC
Confidence 66677899999999999999888764332 2221111 223789999999999999985
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-07 Score=97.40 Aligned_cols=269 Identities=11% Similarity=0.064 Sum_probs=147.1
Q ss_pred eEEEEecCCC------cEEEEECCCCcEEEE-EEcCCceeeceEEeeCCcEEEEEEe---CCEEEEEEcCCCcEE--EEE
Q 003331 487 IYLFVGSHSH------KFICADAKRSSVLWE-IKLEGRIECSAAVLADFSQVVVGCY---KGKIYFLDYLTGDIY--WTF 554 (829)
Q Consensus 487 ~~l~igs~~g------~l~~~d~~tg~~~w~-~~~~~~~~~~~~~~~~~~~v~vg~~---dg~l~~~d~~tG~~~--w~~ 554 (829)
.++|+|+..+ .++.+|..+|+.... ............+++++. +|+.+. ++.|+.||..+|+.. ...
T Consensus 3 ~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 3 ERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred cEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 4688886532 266777888886542 111122223567777776 887776 478999999887743 222
Q ss_pred ecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcC-CCeE--EEeeccCCc---------ccccceeecCCCEEEEEec-
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFR-NYRC--VYKLPCGGS---------IFGSPAIDEVHDVLYVAST- 620 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~-tg~~--~w~~~~~~~---------~~~~~~~~~~~~~l~v~t~- 620 (829)
...........+++++..+|+++ .++.+..||.. +|+. +......+. ....+.+++++. +|+...
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 22222233455677778888887 56889999984 4443 333322211 122355666566 666654
Q ss_pred CCeEEEEEccCCCceEEEe--eccC-CcceeeeeeeecCCEEEEEe-eCCeEEEEc-C--CCCEEE--EeecCCce----
Q 003331 621 SGRLTAISVKALPFHTLWL--HELE-VPAFASLCITSANRHVICCL-VDGHVVALD-S--SGSIIW--RCRTGGPI---- 687 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~--~~~~-~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~--~g~~~w--~~~~~~~~---- 687 (829)
++.+..|+++. +|+.... .... ........+.++++.+|+.+ .++.+.+++ . +|+... .......-
T Consensus 161 ~~~v~~~~~~~-~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 161 SDKVYVYNVSD-AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTEEEEEEECT-TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCEEEEEEECC-CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 67799999882 2543321 1111 11223456777788788764 467788877 3 465421 11111100
Q ss_pred eecCcccccCCC-eEEEEee-CCeEEEEeCC-CCcEE--EEEecCCccccccccccccccccccccCCCcEEEEEccC-C
Q 003331 688 FAGPCTSFALPS-QVLICSR-NGSIYSFEQE-SGNLL--WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS-G 761 (829)
Q Consensus 688 ~~~~~~~~~~~~-~i~~~t~-~g~l~~~d~~-tG~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-G 761 (829)
.....+....++ .+|+... ++.|..|+.. +|++. ..............+ ..++.++|+++.+ +
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------spdg~~l~v~~~~~~ 308 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDL-----------DPTEAFVVVVNQNTD 308 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEE-----------CTTSSEEEEEETTTT
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEE-----------CCCCCEEEEEEcCCC
Confidence 000011223344 5777654 7889999976 34332 233321111111111 2236778887754 7
Q ss_pred cEEEEEee
Q 003331 762 SIHILRVN 769 (829)
Q Consensus 762 ~l~~~d~~ 769 (829)
.+.+|+.+
T Consensus 309 ~v~v~~~d 316 (347)
T 3hfq_A 309 NATLYARD 316 (347)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 78888554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.2e-08 Score=113.11 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=114.3
Q ss_pred EEEecCCCcEEEEECCCCcE--EEEEEcCC----------------ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003331 489 LFVGSHSHKFICADAKRSSV--LWEIKLEG----------------RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~--~w~~~~~~----------------~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
++.++.++ | .||..||+. .-.+.... ....+..++++ +.+++. .++.|+.||..+|+.
T Consensus 38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~ 113 (706)
T 2z3z_A 38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKV 113 (706)
T ss_dssp EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEE
T ss_pred EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCCce
Confidence 33344555 8 999999986 33222210 12345677778 666665 479999999999987
Q ss_pred EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----CeEEEeeccCCc-c-------------cccceeecC
Q 003331 551 YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YRCVYKLPCGGS-I-------------FGSPAIDEV 611 (829)
Q Consensus 551 ~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~~~w~~~~~~~-~-------------~~~~~~~~~ 611 (829)
........ ....+.+++++..|++. .++.|+.||..+ |+.......+.. + ...+.++++
T Consensus 114 ~~l~~~~~-~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD 191 (706)
T 2z3z_A 114 TYLFDTNE-ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK 191 (706)
T ss_dssp EEEECCTT-CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT
T ss_pred EEccCCcc-cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC
Confidence 65443322 23456677777777774 678999999998 877654433322 1 256677887
Q ss_pred CCEEEEEe---------------------------------cCCeEEEEEccCCCceEEEeecc--CCcceeeeeeeecC
Q 003331 612 HDVLYVAS---------------------------------TSGRLTAISVKALPFHTLWLHEL--EVPAFASLCITSAN 656 (829)
Q Consensus 612 ~~~l~v~t---------------------------------~~g~l~~~~~~~~~g~~~w~~~~--~~~~~~s~~~~~~~ 656 (829)
+..|++++ .+..|+.||+++ |+....... .........+++++
T Consensus 192 g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~spdg 269 (706)
T 2z3z_A 192 GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFLTNLSWSPDE 269 (706)
T ss_dssp SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT--TEEEECCCCSCTTCEEEEEEECTTS
T ss_pred CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC--CceEeeccCCCCceeEeeEEEECCC
Confidence 88888776 335789999887 765544321 12223566777888
Q ss_pred CEEEEEeeCC-----eEEEEc-CCCC
Q 003331 657 RHVICCLVDG-----HVVALD-SSGS 676 (829)
Q Consensus 657 ~~l~~~~~~g-----~i~~~d-~~g~ 676 (829)
..+++++.+. .|+.+| .+|+
T Consensus 270 ~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 270 NILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp SEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred CEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 8888877665 899999 7873
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-07 Score=99.26 Aligned_cols=232 Identities=8% Similarity=0.067 Sum_probs=133.0
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEE
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVY 594 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w 594 (829)
..+.+..++..+++++.++.|+.||.++|+................+++ ++.+|+++.. +.|+.||.++++...
T Consensus 48 ~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~ 126 (333)
T 2dg1_A 48 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQD 126 (333)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred cCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence 3566666655444566788999999998887643322222233334443 4567777654 489999998887542
Q ss_pred eec--cCCcccccceeecCCCEEEEEecC-------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-e
Q 003331 595 KLP--CGGSIFGSPAIDEVHDVLYVASTS-------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-V 664 (829)
Q Consensus 595 ~~~--~~~~~~~~~~~~~~~~~l~v~t~~-------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~ 664 (829)
... ........+.+++ ++.+|+++.. +.|+.++.++ ++...... .........+.++++.+|++. .
T Consensus 127 ~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 127 IIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQ-NISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp EECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEE-EESSEEEEEECTTSSEEEEEEGG
T ss_pred EEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCC--CEEEEeec-CCCcccceEECCCCCEEEEEeCC
Confidence 222 1122233445555 4678888763 5788888765 43322111 111123445566667788775 4
Q ss_pred CCeEEEEc-C-CCCEEEEee------cCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCc------
Q 003331 665 DGHVVALD-S-SGSIIWRCR------TGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDP------ 729 (829)
Q Consensus 665 ~g~i~~~d-~-~g~~~w~~~------~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~------ 729 (829)
++.|++++ . +|..+..+. ..+. .....+..+.++.+|+++. ++.|++||+ +|+.+..+..+..
T Consensus 203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~ 280 (333)
T 2dg1_A 203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 280 (333)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCcccccc
Confidence 68899999 4 455433211 1110 0111133556788999975 478999998 5777666654432
Q ss_pred cccccccccccccccccccCCCcEEEEEccCC------cEEEEEee
Q 003331 730 ITASAYIDEHLQLKLESCLSIDRLVCICTSSG------SIHILRVN 769 (829)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G------~l~~~d~~ 769 (829)
........ .+++.+|+++.+| .|+.++..
T Consensus 281 ~~~~~~~~-----------~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 281 RSTHPQFI-----------PGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp BCCEEEEC-----------TTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CcceEEEC-----------CCCCEEEEEeCccCCCCCceEEEEecc
Confidence 11111111 2256888887764 57777654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-07 Score=97.08 Aligned_cols=218 Identities=13% Similarity=0.090 Sum_probs=127.0
Q ss_pred EECCCCcEEEEEEcCCceeec-----eEEeeCCcEEEEEEe-CC--EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCE
Q 003331 501 ADAKRSSVLWEIKLEGRIECS-----AAVLADFSQVVVGCY-KG--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQL 572 (829)
Q Consensus 501 ~d~~tg~~~w~~~~~~~~~~~-----~~~~~~~~~v~vg~~-dg--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 572 (829)
+|..+|.....+..+...... +.+++|+..|++.+. ++ .|+.+|+.+|+.......+......+.+.+++..
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 466666655444333222222 678899988888876 55 4999999999887654433333335667888888
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCCcccc--cceeecCCCEEEEE----------------------ecCCeEEEEE
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYKLPCGGSIFG--SPAIDEVHDVLYVA----------------------STSGRLTAIS 628 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~--~~~~~~~~~~l~v~----------------------t~~g~l~~~~ 628 (829)
|++.+.++.++.||..+|+............. ....+.++..++.. ..++.|+.+|
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 99988888999999999987655544332221 11223333444321 1235789999
Q ss_pred ccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeC------CeEEEEcCCCCEEEEeecCC--ceeecCcccccCCC
Q 003331 629 VKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVD------GHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPS 699 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~------g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~ 699 (829)
+.+ |+....... ......+.+++ +++.+++.... ..|+.+|.++.......... .....+....+ +.
T Consensus 175 ~~~--g~~~~l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spd-g~ 250 (388)
T 3pe7_A 175 LKT--GESTVILQE-NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPD-GS 250 (388)
T ss_dssp TTT--CCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTT-SS
T ss_pred CCC--CceEEeecC-CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCC-CC
Confidence 887 654433322 22235667777 77777666542 37888883333333332222 11222222222 22
Q ss_pred eE-EEEeeCC----eEEEEeCCCCcEEE
Q 003331 700 QV-LICSRNG----SIYSFEQESGNLLW 722 (829)
Q Consensus 700 ~i-~~~t~~g----~l~~~d~~tG~~~w 722 (829)
.| |+...++ .|+.||..+|+...
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQ 278 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEE
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEE
Confidence 35 4444433 39999999998644
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-07 Score=98.08 Aligned_cols=276 Identities=13% Similarity=0.097 Sum_probs=145.3
Q ss_pred EEEEEEeCC----E--EEEEEcCCCcEEEEE-ecCCeeeeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEE--eec
Q 003331 530 QVVVGCYKG----K--IYFLDYLTGDIYWTF-QTCGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVY--KLP 597 (829)
Q Consensus 530 ~v~vg~~dg----~--l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w--~~~ 597 (829)
.+|+|++.+ . ++.+|.++|+..... ...........+++++. +|+.+. ++.|+.||..+|+... ...
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 578887642 3 667777788875421 11112222344555444 887765 4789999998887432 222
Q ss_pred cCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCce--EEEeeccCC---------cceeeeeeeecCCEEEEEee-
Q 003331 598 CGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFH--TLWLHELEV---------PAFASLCITSANRHVICCLV- 664 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~--~~w~~~~~~---------~~~~s~~~~~~~~~l~~~~~- 664 (829)
........+.+++++..+|++. .++.+..|+++. +|. .+....... .......+.+++. +|+...
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~ 160 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG 160 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC
Confidence 2233334556777778899888 578899999853 133 333332211 1123456666777 666554
Q ss_pred CCeEEEEc-C-CCCEEEEe--ec--CCceeecCcccccCCCe-EEEEe-eCCeEEEEeCC--CCcEEEEE--ec-CCccc
Q 003331 665 DGHVVALD-S-SGSIIWRC--RT--GGPIFAGPCTSFALPSQ-VLICS-RNGSIYSFEQE--SGNLLWEY--SV-GDPIT 731 (829)
Q Consensus 665 ~g~i~~~d-~-~g~~~w~~--~~--~~~~~~~~~~~~~~~~~-i~~~t-~~g~l~~~d~~--tG~~~w~~--~~-~~~~~ 731 (829)
++.+.+|+ . +|++.... .. +..... +....++. +|+.+ .++.+..|+.. +|++.... .. +....
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~---~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH---LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTTCCEEE---EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCCCCCce---EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 66799999 5 67654221 11 111111 12233444 77754 46777777655 56653221 11 11000
Q ss_pred cccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEE
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVF 808 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~ 808 (829)
... ........+++.++|+.. .++.|.+|+.+.... ..........+.......+ ++..||
T Consensus 238 ~~~------~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~----------~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 238 AHN------GAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH----------LTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp SCC------EEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC----------EEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred CCC------cceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc----------EEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 000 000011223466777655 478899999863210 1222222222222222222 345788
Q ss_pred EeeeC-CeEEEE--eccccccc
Q 003331 809 VGCRD-DYIYCI--ALETQHLE 827 (829)
Q Consensus 809 vg~~~-g~l~~~--d~~tg~~~ 827 (829)
+++.+ +.+..| |.++|+++
T Consensus 302 v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 302 VVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEETTTTEEEEEEECTTTCCEE
T ss_pred EEEcCCCcEEEEEEeCCCCeEE
Confidence 88765 777777 77788764
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-07 Score=102.42 Aligned_cols=146 Identities=6% Similarity=-0.045 Sum_probs=93.6
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEE-----cCCceeeceEEee--------CCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIK-----LEGRIECSAAVLA--------DFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~-----~~~~~~~~~~~~~--------~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
...+..++.|+.|..||..+++...... .+...+.+..+++ ++..|..++.|++|..||..++..+.
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~ 180 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL 180 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee
Confidence 4568888999999999999887654332 2333344556654 66789999999999999998877665
Q ss_pred EEecCCeeeeeeeeecCC-CEEEEeccCCeEEEEEcCCCeEEEeeccCC-------------------------cccccc
Q 003331 553 TFQTCGEVKCQPVVDAPR-QLIWCGSHDHNLYALDFRNYRCVYKLPCGG-------------------------SIFGSP 606 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~-~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-------------------------~~~~~~ 606 (829)
....+.....+..+.+++ ..+.+++.|+.++.||..+++......... ......
T Consensus 181 ~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v 260 (393)
T 4gq1_A 181 AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANV 260 (393)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEE
T ss_pred eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceee
Confidence 543333333345566554 468889999999999999987654332110 001111
Q ss_pred ee-ecCCCEEEEEecCCeEEEEEccC
Q 003331 607 AI-DEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 607 ~~-~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.+ ..++..++.++.++.+..||+.+
T Consensus 261 ~~~~~dg~~l~s~s~d~~i~vwd~~~ 286 (393)
T 4gq1_A 261 RWIGSDGSGILAMCKSGAWLRWNLFA 286 (393)
T ss_dssp EEETTTTCEEEEECTTSEEEEEEC--
T ss_pred eeecCCCCEEEEEeCCCCEEEEECcc
Confidence 12 23456777788888888888765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=91.89 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=147.6
Q ss_pred CeEEEEecCC----CcEE--EEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC----CEEEEE--EcCCCcEEE-
Q 003331 486 DIYLFVGSHS----HKFI--CADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK----GKIYFL--DYLTGDIYW- 552 (829)
Q Consensus 486 ~~~l~igs~~----g~l~--~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~--d~~tG~~~w- 552 (829)
..++|+|+.. +.|+ .+|..+|+................+++++..||+++.+ +.+..| +..+|+...
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 4578898753 3444 45678888765443322222346788898999999875 677655 444576543
Q ss_pred -EEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEee----ccCC-cc---------cccceeecCCCEEE
Q 003331 553 -TFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKL----PCGG-SI---------FGSPAIDEVHDVLY 616 (829)
Q Consensus 553 -~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~----~~~~-~~---------~~~~~~~~~~~~l~ 616 (829)
.....+.......+ +++.+|+++ .++.+..|+..+...+... ...+ .. ...+.+++++..+|
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 23322222222223 557777776 4678999998653322111 1111 00 12356777677788
Q ss_pred EEec-CCeEEEEEccCCCc----e-EE-----Eeecc-CCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEEE--
Q 003331 617 VAST-SGRLTAISVKALPF----H-TL-----WLHEL-EVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIWR-- 680 (829)
Q Consensus 617 v~t~-~g~l~~~~~~~~~g----~-~~-----w~~~~-~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w~-- 680 (829)
++.. ++.+..|+.+...+ + .. ..... .........+.+++..+|+.+ .++.|.+|+ .+|++...
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 7765 67888898775433 2 11 11111 112224566777888888887 578899999 77755322
Q ss_pred eecCCceeecC-cccccCCC-eEEEEeeC--CeEEEEeC--CCCcEEE--EEecCCccccccccccccccccccccCCCc
Q 003331 681 CRTGGPIFAGP-CTSFALPS-QVLICSRN--GSIYSFEQ--ESGNLLW--EYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 681 ~~~~~~~~~~~-~~~~~~~~-~i~~~t~~--g~l~~~d~--~tG~~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
......-...+ .+....++ .+|++..+ +.|..|+. .+|++.. ....+..... .. ..+++.
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~-~~-----------~spdg~ 318 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRN-FI-----------ITPNGK 318 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCE-EE-----------ECTTSC
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCce-EE-----------ECCCCC
Confidence 22111000000 11222344 57777655 67888776 4677432 3332111111 11 122367
Q ss_pred EEEEEc-cCCcEEEEEee
Q 003331 753 LVCICT-SSGSIHILRVN 769 (829)
Q Consensus 753 ~l~~~~-~~G~l~~~d~~ 769 (829)
++++++ .++.|.+|+.+
T Consensus 319 ~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 788877 56778886554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-07 Score=107.89 Aligned_cols=266 Identities=10% Similarity=0.037 Sum_probs=156.5
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-----CcEEEEEecCCe-e
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-----GDIYWTFQTCGE-V 560 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-----G~~~w~~~~~~~-~ 560 (829)
+.+.+++ ++.++.||..+|+........ .....+.++++++.|++. .++.|+.||..+ |+.+.....+.. +
T Consensus 93 ~~~~~~~-~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~ 169 (706)
T 2z3z_A 93 GLVVLFT-QGGLVGFDMLARKVTYLFDTN-EETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL 169 (706)
T ss_dssp TEEEEEE-TTEEEEEETTTTEEEEEECCT-TCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred CeEEEEE-CCEEEEEECCCCceEEccCCc-ccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence 5555544 488999999998875443332 234577899998888774 689999999988 877643222211 1
Q ss_pred -------------eeeeeeecCCCEEEEec---------------------------------cCCeEEEEEcCCCeEEE
Q 003331 561 -------------KCQPVVDAPRQLIWCGS---------------------------------HDHNLYALDFRNYRCVY 594 (829)
Q Consensus 561 -------------~~~~~~~~~~~~i~~gs---------------------------------~~g~l~~~d~~tg~~~w 594 (829)
...+.+++++..|++++ .+..|+.||.++|+..+
T Consensus 170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~ 249 (706)
T 2z3z_A 170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY 249 (706)
T ss_dssp EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence 24566777788888776 33579999999998776
Q ss_pred eecc--CCcccccceeecCCCEEEEEecCC-----eEEEEEccCCCc-eEEEeeccCCc----ceeeeeeee--cCCEEE
Q 003331 595 KLPC--GGSIFGSPAIDEVHDVLYVASTSG-----RLTAISVKALPF-HTLWLHELEVP----AFASLCITS--ANRHVI 660 (829)
Q Consensus 595 ~~~~--~~~~~~~~~~~~~~~~l~v~t~~g-----~l~~~~~~~~~g-~~~w~~~~~~~----~~~s~~~~~--~~~~l~ 660 (829)
.... .......+.+++++..|++++.++ .|+.||+.+ | ........... ....+.+++ ++..++
T Consensus 250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET--GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT--CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC--CceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 5432 223345566777778888877664 899999887 6 32221111111 113446666 666777
Q ss_pred EEeeCCeEEEE--cCCCCEEEEeecCC-ceeecCcccccCCCeEEEEee-CC----eEEEEeCCCCcEEEEEecCCcccc
Q 003331 661 CCLVDGHVVAL--DSSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSR-NG----SIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 661 ~~~~~g~i~~~--d~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~-~g----~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
++..++.+.++ +.+|+.+..+..+. .+........ .++.|++.+. ++ .|+.+|..+++.. .+.....+..
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~ 405 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGKTK-DLTPESGMHR 405 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESCCSSSEEE
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCCce-eccCCCceEE
Confidence 77666654444 44566554443322 1221111111 2345665544 43 7999998887632 2121222211
Q ss_pred ccccccccccccccccCCCcEEEEEccC----CcEEEEEeecC
Q 003331 733 SAYIDEHLQLKLESCLSIDRLVCICTSS----GSIHILRVNLD 771 (829)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G~l~~~d~~~~ 771 (829)
+. ...++..+++...+ +.|++||..++
T Consensus 406 -~~-----------~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 406 -TQ-----------LSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp -EE-----------ECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred -EE-----------ECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 11 12235556555333 45999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.7e-07 Score=93.62 Aligned_cols=272 Identities=9% Similarity=0.016 Sum_probs=154.7
Q ss_pred eEEEEecCC--CcEEE--EECCCCcEEEE--EEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcC-CCcEEEEEe--c
Q 003331 487 IYLFVGSHS--HKFIC--ADAKRSSVLWE--IKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYL-TGDIYWTFQ--T 556 (829)
Q Consensus 487 ~~l~igs~~--g~l~~--~d~~tg~~~w~--~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~-tG~~~w~~~--~ 556 (829)
..+|+|+.. +.|+. +|..+|++.-. ..... .......++++++.+|+++.+ .+..||.. +|++..... .
T Consensus 3 ~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~ 81 (365)
T 1jof_A 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred EEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence 468999874 45665 45678876422 21121 122356678888899999887 89999987 888754332 2
Q ss_pred CCeeeeeeeeecCCCE--EEEec-------------cCCeEEEEEcC-CCeEEEeecc----CCcccccceeecCCCEEE
Q 003331 557 CGEVKCQPVVDAPRQL--IWCGS-------------HDHNLYALDFR-NYRCVYKLPC----GGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~--i~~gs-------------~~g~l~~~d~~-tg~~~w~~~~----~~~~~~~~~~~~~~~~l~ 616 (829)
.+. .....+++++.. +++++ .++.+..|+.. +|++.-.... .......+.+++++..+|
T Consensus 82 ~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 82 GGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 222 222344555553 44443 57888899886 5765433321 223334566777777888
Q ss_pred EEec-CCeEEEEEcc-CCCceEE--EeeccC--CcceeeeeeeecCCEEEEEee-CCeEEEEc---CCCCEEE---Eeec
Q 003331 617 VAST-SGRLTAISVK-ALPFHTL--WLHELE--VPAFASLCITSANRHVICCLV-DGHVVALD---SSGSIIW---RCRT 683 (829)
Q Consensus 617 v~t~-~g~l~~~~~~-~~~g~~~--w~~~~~--~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d---~~g~~~w---~~~~ 683 (829)
++.. ++.|+.|+.+ + |+.. ...... ........+.+++..+|+++. ++.+.+++ .+|++.. ....
T Consensus 161 ~~~~~~~~v~~~~~~~~--g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 238 (365)
T 1jof_A 161 SADLTANKLWTHRKLAS--GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEETTTTEEEEEEECTT--SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EEcCCCCEEEEEEECCC--CCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEc
Confidence 8764 5789999988 5 6543 222211 222345677778889988875 57777775 3677532 1221
Q ss_pred -CCce---e-------ecCccc-ccCCC-eEEEEeeCC------eEEEEeCC-CCcEEEE---EecC-Cccccccccccc
Q 003331 684 -GGPI---F-------AGPCTS-FALPS-QVLICSRNG------SIYSFEQE-SGNLLWE---YSVG-DPITASAYIDEH 739 (829)
Q Consensus 684 -~~~~---~-------~~~~~~-~~~~~-~i~~~t~~g------~l~~~d~~-tG~~~w~---~~~~-~~~~~~~~~~~~ 739 (829)
.... . ....+. ...++ .+|+++.+. .|..|+.. +|++... .... .......+...
T Consensus 239 ~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~- 317 (365)
T 1jof_A 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC- 317 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC-
T ss_pred CCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC-
Confidence 1100 0 001122 22344 678776533 78899875 6876532 2111 11111111110
Q ss_pred cccccccccCCCcEEEEEccC-CcEEEEEeecC
Q 003331 740 LQLKLESCLSIDRLVCICTSS-GSIHILRVNLD 771 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~~-G~l~~~d~~~~ 771 (829)
. . +++++++++.+ +.|.+|+.+.+
T Consensus 318 ------~-~-dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 ------P-W-SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ------T-T-CTTEEEEECSSSCEEEEEEEETT
T ss_pred ------C-c-CCCEEEEEEcCCCeEEEEEEchh
Confidence 0 0 37888888764 88999988743
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-07 Score=91.66 Aligned_cols=223 Identities=9% Similarity=-0.081 Sum_probs=133.4
Q ss_pred cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecC-CeeeeeeeeecCC
Q 003331 493 SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTC-GEVKCQPVVDAPR 570 (829)
Q Consensus 493 s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~-~~~~~~~~~~~~~ 570 (829)
+.++.|+.||..+++.......... ..++.+++++..+++++ ++.|+.||..+ ++........ ......+.+.+++
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3567899999999988755544333 44678888988888876 88999999999 8776544333 1333456677777
Q ss_pred CEEEEecc----CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 571 QLIWCGSH----DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 571 ~~i~~gs~----~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
..+++++. ...|+.++..+++... +..... ...+.+.+++..++ .+..++.+..|+.+..+++.. .......
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 173 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRL-MTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET-RLTHGEG 173 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEE-CCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCSSS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEE-eecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcce-EcccCCC
Confidence 78888763 3578888887776432 222222 33456666667666 566677655555432224433 2222223
Q ss_pred ceeeeeeeecCCEEEEEee-CCeEEEEc--CCCCEEEEeecCCceeecCcccccCCCeEEEEeeC-----------CeEE
Q 003331 646 AFASLCITSANRHVICCLV-DGHVVALD--SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN-----------GSIY 711 (829)
Q Consensus 646 ~~~s~~~~~~~~~l~~~~~-~g~i~~~d--~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~-----------g~l~ 711 (829)
....+.+.+++..+++++. ++.+.+++ .++.....+.........+.... .+..|++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 3355667777777777653 55555444 24444333332222111111111 23456666554 4699
Q ss_pred EEeCCCCcEE
Q 003331 712 SFEQESGNLL 721 (829)
Q Consensus 712 ~~d~~tG~~~ 721 (829)
.||.++++..
T Consensus 253 ~~d~~~~~~~ 262 (297)
T 2ojh_A 253 LMDMDGGNVE 262 (297)
T ss_dssp EEETTSCSCE
T ss_pred EEecCCCCce
Confidence 9999988764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.8e-07 Score=96.24 Aligned_cols=232 Identities=10% Similarity=0.016 Sum_probs=134.8
Q ss_pred CCeEEEEecC-CC--cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeee
Q 003331 485 SDIYLFVGSH-SH--KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 485 ~~~~l~igs~-~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++..|+..+. ++ .|+.+|+.+|+.......+......+.+++++..|++...++.|+.||+.+|+....+..+....
T Consensus 46 Dg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~ 125 (388)
T 3pe7_A 46 DGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWV 125 (388)
T ss_dssp TSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEE
T ss_pred CCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcc
Confidence 3444555554 55 49999999998765444333332356789999999999888899999999998876555544332
Q ss_pred ee--eeeecCCCEEEE----------------------eccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEE
Q 003331 562 CQ--PVVDAPRQLIWC----------------------GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLY 616 (829)
Q Consensus 562 ~~--~~~~~~~~~i~~----------------------gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~ 616 (829)
.. ....+++..++. ...+..|+.+|..+|+........ .....+.+++ ++..|+
T Consensus 126 ~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~ 204 (388)
T 3pe7_A 126 GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVA 204 (388)
T ss_dssp EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEE
T ss_pred cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEE
Confidence 21 122334444432 123467999999999766544332 2335566776 666665
Q ss_pred EEecC------CeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEee-CC----eEEEEc-CCCCEEEEee
Q 003331 617 VASTS------GRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLV-DG----HVVALD-SSGSIIWRCR 682 (829)
Q Consensus 617 v~t~~------g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~-~g----~i~~~d-~~g~~~w~~~ 682 (829)
+.... ..|+.++.++ +.. ....... .....+.+++++..+++.+. ++ .|+.+| .+|+......
T Consensus 205 ~~~~~~~~~~~~~l~~~d~~~--~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 205 FCHEGPHDLVDARMWLINEDG--TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp EEECSCTTTSSCSEEEEETTS--CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred EEEecCCCCCcceEEEEeCCC--Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence 55542 3788898775 332 2222222 12345677778876655443 22 399999 8887533222
Q ss_pred cCCc--eeecC---cccccCCCeEEEE---------eeCCeEEEEeCCCCcEE
Q 003331 683 TGGP--IFAGP---CTSFALPSQVLIC---------SRNGSIYSFEQESGNLL 721 (829)
Q Consensus 683 ~~~~--~~~~~---~~~~~~~~~i~~~---------t~~g~l~~~d~~tG~~~ 721 (829)
.... ....+ ....+ +..|++. ..+..|+.||..+|+..
T Consensus 282 ~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGD-GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH 333 (388)
T ss_dssp ECCEEEEEECTTSSEEEEE-ECCC------------CCCCEEEEEETTTTEEE
T ss_pred CCCceeeeecCCCCeEccC-CCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence 2220 00101 11111 1223332 34568999999988764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-07 Score=107.91 Aligned_cols=232 Identities=11% Similarity=0.048 Sum_probs=144.4
Q ss_pred eeceEEeeCCcEEEEEEe-CC-----EEEEEEcCCCcEEEEEecCC------------------------eeeeeeeeec
Q 003331 519 ECSAAVLADFSQVVVGCY-KG-----KIYFLDYLTGDIYWTFQTCG------------------------EVKCQPVVDA 568 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~-dg-----~l~~~d~~tG~~~w~~~~~~------------------------~~~~~~~~~~ 568 (829)
...+.+++||..|++++. ++ .|+.||..+|+.......+. .....+.+++
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 346788889999998887 77 89999999998766554321 1134567777
Q ss_pred CCCEEEEeccCCeEEEEEcCCC---eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc
Q 003331 569 PRQLIWCGSHDHNLYALDFRNY---RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP 645 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~ 645 (829)
++..|++++. +.|+.||..+| +.. .+.........+.+++++..|++++ ++.|+.||..+ |+..........
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~--g~~~~~~~~~~~ 193 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVR-QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS--GRQMQLTADGST 193 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCC-BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT--TEEEECCCCCCS
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEE-EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC--CCEEEeccCCcc
Confidence 8888888775 89999999988 443 2322333445677888778787776 56899999987 665433222211
Q ss_pred -c---------------eeeeeeeecCCEEEEEeeCC---------------------------------eEEEEc-CC-
Q 003331 646 -A---------------FASLCITSANRHVICCLVDG---------------------------------HVVALD-SS- 674 (829)
Q Consensus 646 -~---------------~~s~~~~~~~~~l~~~~~~g---------------------------------~i~~~d-~~- 674 (829)
. ..++.+++++..+++++.++ .|+.+| .+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 24567778888888887654 778888 66
Q ss_pred CCEEEEeec--CCceeecCcccccCCCeEEEEee-----CCeEEEEeCCCCcEEEEEecCCcc----ccccccccccccc
Q 003331 675 GSIIWRCRT--GGPIFAGPCTSFALPSQVLICSR-----NGSIYSFEQESGNLLWEYSVGDPI----TASAYIDEHLQLK 743 (829)
Q Consensus 675 g~~~w~~~~--~~~~~~~~~~~~~~~~~i~~~t~-----~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~~~~~~~ 743 (829)
++....... .......... -.+..|++.+. +..|+.||..+|+........... ...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-------- 343 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR-------- 343 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE--------
T ss_pred CceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE--------
Confidence 765433211 1111111111 12345665543 457999999999876544332211 01111
Q ss_pred cccccCCCcEEEEEccCCcEEEEEe
Q 003331 744 LESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 744 ~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
...++..++++..+|.+.+|..
T Consensus 344 ---~spdg~~~~~~~~~g~~~l~~~ 365 (741)
T 2ecf_A 344 ---FLDDGSILWSSERTGFQHLYRI 365 (741)
T ss_dssp ---ECTTSCEEEEECTTSSCEEEEE
T ss_pred ---ECCCCeEEEEecCCCccEEEEE
Confidence 1223667788888885444443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-06 Score=107.27 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=70.1
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCCeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.|...+. +.|+.||..+|+.. .+..+.....++.+++||..|+..+.+ ..|+.||..+|+.. .+..+....
T Consensus 26 ~iaf~~~-~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~-~lt~~~~~~ 102 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK-RITYFSGKS 102 (1045)
T ss_dssp EEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE-ECCCCCEEE
T ss_pred EEEEEEC-CcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeE-EcccCCCcc
Confidence 4444443 57999999888754 444455556788999999988877653 37999999888753 344344333
Q ss_pred -------eeeeeecCCCEEEEeccC------CeEEEEEcCCCeEE
Q 003331 562 -------CQPVVDAPRQLIWCGSHD------HNLYALDFRNYRCV 593 (829)
Q Consensus 562 -------~~~~~~~~~~~i~~gs~~------g~l~~~d~~tg~~~ 593 (829)
..+.+++++..+++++.+ ..|+.+|..+|+..
T Consensus 103 ~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV 147 (1045)
T ss_dssp ETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred cccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE
Confidence 566777766666666533 46999998877654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-06 Score=92.90 Aligned_cols=289 Identities=13% Similarity=0.095 Sum_probs=172.3
Q ss_pred cccccccccccccccceEEeeCCCeEEEEecCCCcEEEEECC--CCcEEEEEEcCCceeeceEEe----eCCcEEEEEEe
Q 003331 463 QELWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAK--RSSVLWEIKLEGRIECSAAVL----ADFSQVVVGCY 536 (829)
Q Consensus 463 ~~~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~--tg~~~w~~~~~~~~~~~~~~~----~~~~~v~vg~~ 536 (829)
+++.++.++.... -+.++.++.++|+++.++.|..||+. +++...+...+... ....++ ++++++|++++
T Consensus 188 ~v~~~i~~g~~p~---~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P-~~ia~s~~~~pDGk~l~v~n~ 263 (567)
T 1qks_A 188 EIKTVLDTGYAVH---ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-RSIETSKMEGWEDKYAIAGAY 263 (567)
T ss_dssp CEEEEEECSSCEE---EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-EEEEECCSTTCTTTEEEEEEE
T ss_pred eEEEEEeCCCCcc---ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCC-ceeEEccccCCCCCEEEEEEc
Confidence 3444555544322 23345567899999999999999995 88988887765543 356677 48899999877
Q ss_pred C-CEEEEEEcCCCcEEEEEecCCe----------eeeeeee-ecCCCEEEE-eccCCeEEEEEcCCCeEEE--eeccCCc
Q 003331 537 K-GKIYFLDYLTGDIYWTFQTCGE----------VKCQPVV-DAPRQLIWC-GSHDHNLYALDFRNYRCVY--KLPCGGS 601 (829)
Q Consensus 537 d-g~l~~~d~~tG~~~w~~~~~~~----------~~~~~~~-~~~~~~i~~-gs~~g~l~~~d~~tg~~~w--~~~~~~~ 601 (829)
. +.+..+|..|.+++.++.+.+. .....++ ...+..+++ -...|.|..+|..+.+.+- .+..+ .
T Consensus 264 ~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~-~ 342 (567)
T 1qks_A 264 WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-R 342 (567)
T ss_dssp ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-S
T ss_pred cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc-c
Confidence 4 8899999999999988776431 1111222 222233333 3445778888876643221 22111 1
Q ss_pred ccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeecc-CC-cce-eeee-eeecCCEEEEEee--CCeEEEEc-C
Q 003331 602 IFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL-EV-PAF-ASLC-ITSANRHVICCLV--DGHVVALD-S 673 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~-~~-~~~-~s~~-~~~~~~~l~~~~~--~g~i~~~d-~ 673 (829)
..-...++.++.++|++. .++.|.++|.++ ++....... .. +.. .... ..++++.+|+.+. ++.|.++| .
T Consensus 343 ~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANARNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cccCceECCCCCEEEEEeCCCCeEEEEECCC--CcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence 112234566677888876 467899999988 888887766 32 211 1112 3445678887653 57899999 5
Q ss_pred C-------CCEEEEeecCCceeecCcccc-cCCCeEEEEee-------CCeEEEEeCCCC-----cEEEEE-ec------
Q 003331 674 S-------GSIIWRCRTGGPIFAGPCTSF-ALPSQVLICSR-------NGSIYSFEQESG-----NLLWEY-SV------ 726 (829)
Q Consensus 674 ~-------g~~~w~~~~~~~~~~~~~~~~-~~~~~i~~~t~-------~g~l~~~d~~tG-----~~~w~~-~~------ 726 (829)
+ -+.+.+....+. ...++.. -....+|+.+. .+.|..||..+. ...++. ..
T Consensus 421 ~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~ 498 (567)
T 1qks_A 421 PEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI 498 (567)
T ss_dssp TTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred CCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccccc
Confidence 5 344444444321 0111111 12457999873 358999998776 222211 11
Q ss_pred C--CccccccccccccccccccccCCCcEEEEEcc-----CCcEEEEEeecC
Q 003331 727 G--DPITASAYIDEHLQLKLESCLSIDRLVCICTS-----SGSIHILRVNLD 771 (829)
Q Consensus 727 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~G~l~~~d~~~~ 771 (829)
+ ..-...+. ...++..+|++.. ++.|.++|.+++
T Consensus 499 ~~~~~~~~~~~-----------~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 499 TEGQPRVVQGE-----------FNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CSSCCEEEEEE-----------ECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcceEeee-----------ECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 0 00000011 1234788998853 688999998865
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-08 Score=112.07 Aligned_cols=185 Identities=9% Similarity=-0.056 Sum_probs=120.1
Q ss_pred ecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeCCcEEEEEEeC---------CEEEEEEcCCCcEEEEEecCCe
Q 003331 492 GSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLADFSQVVVGCYK---------GKIYFLDYLTGDIYWTFQTCGE 559 (829)
Q Consensus 492 gs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~v~vg~~d---------g~l~~~d~~tG~~~w~~~~~~~ 559 (829)
.+.+|.|+.||+.+|+....+..+.. ...++.+++|+..|++++.+ +.++.||..+|+.. .+.....
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~ 111 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEV 111 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTC
T ss_pred EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCcc
Confidence 36788999999999988765554332 13467899999988888653 78999999999862 2322211
Q ss_pred ---eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc------------------cccceeecCCCEEEEE
Q 003331 560 ---VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI------------------FGSPAIDEVHDVLYVA 618 (829)
Q Consensus 560 ---~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~------------------~~~~~~~~~~~~l~v~ 618 (829)
....+.+++++..|.+++. +.|+.||..+|+.......+... ...+.+++++..|+++
T Consensus 112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~ 190 (723)
T 1xfd_A 112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (723)
T ss_dssp CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence 1345677777777777765 78999999998776544332211 1356677777888776
Q ss_pred ecCC----------------------------------eEEEEEccCCCceEEEeeccC------CcceeeeeeeecCCE
Q 003331 619 STSG----------------------------------RLTAISVKALPFHTLWLHELE------VPAFASLCITSANRH 658 (829)
Q Consensus 619 t~~g----------------------------------~l~~~~~~~~~g~~~w~~~~~------~~~~~s~~~~~~~~~ 658 (829)
+.++ .|+.||+.+ ++........ ......+.+++++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~ 268 (723)
T 1xfd_A 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPPDDPRMREYYITMVKWATSTKV 268 (723)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCCCCGGGSSEEEEEEEESSSSEE
T ss_pred EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCCccCCCccceeEEEEEeCCCeE
Confidence 6432 688888876 5432222221 122345667777666
Q ss_pred EEEEeeC----CeEEEEc-CCCCEEEE
Q 003331 659 VICCLVD----GHVVALD-SSGSIIWR 680 (829)
Q Consensus 659 l~~~~~~----g~i~~~d-~~g~~~w~ 680 (829)
+++.+.. ..|+.+| .+|+....
T Consensus 269 l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 269 AVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp EEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred EEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 6555432 4688889 78876543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.85 E-value=3.1e-07 Score=95.04 Aligned_cols=228 Identities=10% Similarity=0.083 Sum_probs=132.0
Q ss_pred ceEEeeCCcEEEEE--------EeCCEEEEEEcCCCcEEEEEe-----cCCeeeeeeeeecCCCEEEEeccCCeEEEEEc
Q 003331 521 SAAVLADFSQVVVG--------CYKGKIYFLDYLTGDIYWTFQ-----TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDF 587 (829)
Q Consensus 521 ~~~~~~~~~~v~vg--------~~dg~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~ 587 (829)
.+++..+ +.+|++ +.++.|+.||..+|+...... .... .....++.+++.+|+++..+.|+.||.
T Consensus 22 ~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-~~~i~~~~~~g~l~v~~~~~~l~~~d~ 99 (314)
T 1pjx_A 22 GPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGI-PAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp EEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECC-EEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCC-CceEEEecCCCcEEEEECCCCEEEEeC
Confidence 4455544 456666 678899999988888753221 1111 222334433378999887778999998
Q ss_pred CCCeEEEe-eccC-C---cccccceeecCCCEEEEEecC----------------CeEEEEEccCCCceEEEeeccCCcc
Q 003331 588 RNYRCVYK-LPCG-G---SIFGSPAIDEVHDVLYVASTS----------------GRLTAISVKALPFHTLWLHELEVPA 646 (829)
Q Consensus 588 ~tg~~~w~-~~~~-~---~~~~~~~~~~~~~~l~v~t~~----------------g~l~~~~~~~~~g~~~w~~~~~~~~ 646 (829)
+ |+.... .... . .......++. ++.+|+++.. +.|+.++.+ |+........ ..
T Consensus 100 ~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~-~~ 173 (314)
T 1pjx_A 100 D-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQVDTAF-QF 173 (314)
T ss_dssp T-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEEEEEE-SS
T ss_pred C-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC---CCEEEeccCC-CC
Confidence 8 877644 3221 1 1123344554 5678888753 568888765 4433221111 11
Q ss_pred eeeeeee----ecCCEEEEEe-eCCeEEEEc-C-CCCEE----E-EeecC--CceeecCcccccCCCeEEEEee-CCeEE
Q 003331 647 FASLCIT----SANRHVICCL-VDGHVVALD-S-SGSII----W-RCRTG--GPIFAGPCTSFALPSQVLICSR-NGSIY 711 (829)
Q Consensus 647 ~~s~~~~----~~~~~l~~~~-~~g~i~~~d-~-~g~~~----w-~~~~~--~~~~~~~~~~~~~~~~i~~~t~-~g~l~ 711 (829)
.....+. ++++.+|++. .++.|++++ . +|+.. + .+... .... .+..+.++.+|+++. ++.|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD---GMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE---EEEEBTTCCEEEEEETTTEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCC---ceEECCCCCEEEEEcCCCEEE
Confidence 1233444 4555788775 468899998 4 56532 1 11111 1111 123456789999974 67899
Q ss_pred EEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc-CCcEEEEEeec
Q 003331 712 SFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVNL 770 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~~ 770 (829)
+||+++|+....+..+.........+ .+++.+|+++. ++.|+.++...
T Consensus 251 ~~d~~~g~~~~~~~~~~~~~~~i~~~-----------~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQPKMRIRCPFEKPSNLHFK-----------PQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEEC-----------TTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCcEeEEEeCCCCCceeEEEC-----------CCCCEEEEEeCCCCeEEEEeCCC
Confidence 99998888766665442221211122 12555888764 57899998763
|
| >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-09 Score=85.50 Aligned_cols=69 Identities=25% Similarity=0.313 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 285 TKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+.+++++.++++|+++|+. +.++++++||++|+|||.+++|...| .++...+|++||+..|+.++.+.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~~l~~~ 86 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL 86 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHH
Confidence 34567899999999999998 77999999999999999999998765 47888999999999999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-08 Score=104.09 Aligned_cols=245 Identities=9% Similarity=0.023 Sum_probs=149.0
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCc--EEEEEecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGD--IYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~--~~w~~~~~~~~~~ 562 (829)
++..+..++.|+.|. |.++++.+ +.+......+.++++| .++ .|+..+++ .+.+.. +.....
T Consensus 26 DG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~---~~~~~~~~~~~~~~~~-~~~~V~ 89 (588)
T 2j04_A 26 DGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FEN---KLDFELAQQNGLLNSQ-PVCYPR 89 (588)
T ss_dssp TSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCC---TTTTSCCCSSCSSTTS-CSCCEE
T ss_pred CCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------Ccc---eEEEEeCCCceEeecC-CCCcEE
Confidence 566777778888777 77777644 3333333456666665 233 33444433 221211 234445
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc-----ccccceeecCCCEEEEEecCCeEEEEEccCCCce--
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS-----IFGSPAIDEVHDVLYVASTSGRLTAISVKALPFH-- 635 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~-- 635 (829)
...+++++..|.+++.+|.++.||.++ ++-.+. +.. ...+.++++++..|++++.+|.|..||+++ +.
T Consensus 90 ~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~--~~l~ 164 (588)
T 2j04_A 90 VCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK--NSEN 164 (588)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC--CTTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC--Cccc
Confidence 566788888999999999999999543 333334 332 245677888899999999999999999987 53
Q ss_pred -----EEEeecc----CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCE--EEE-ee-cC-CceeecCcccccCCCe
Q 003331 636 -----TLWLHEL----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSI--IWR-CR-TG-GPIFAGPCTSFALPSQ 700 (829)
Q Consensus 636 -----~~w~~~~----~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~--~w~-~~-~~-~~~~~~~~~~~~~~~~ 700 (829)
.+..... +.....+.+.++++ +.+++.|+.++.|| .+++. +++ .. .. ..+.+.. .. ++.
T Consensus 165 ~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva---Fs-g~~ 238 (588)
T 2j04_A 165 TPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK---IV-DYK 238 (588)
T ss_dssp CCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE---EE-TTE
T ss_pred cccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE---EE-CCE
Confidence 2333321 22344566677655 78888899999999 65553 122 21 11 1222222 22 345
Q ss_pred EEEEeeCCeEEEEeCCCCcE-EEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 701 VLICSRNGSIYSFEQESGNL-LWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+..++ ++.|..||..+++. ...+.....+...++.+ ..++..+.++..+|. .+|..
T Consensus 239 LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~----------s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 239 VVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNH----------EKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETT----------CSSCEEEEECSSCEE-EEEES
T ss_pred EEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeee----------CCCCCEEEEEcCCCC-EEEee
Confidence 55555 79999999998888 44444333333333211 112557778888888 55554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-06 Score=89.94 Aligned_cols=224 Identities=15% Similarity=0.139 Sum_probs=129.0
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEec--
Q 003331 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQT-- 556 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~-- 556 (829)
.++.||+ ++.++.|+.||..+++................+..++ .+|+++.. +.|+.||.++++.......
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 4555775 6778899999999988764332222223345555554 57777654 4899999888876533221
Q ss_pred CCeeeeeeeeecCCCEEEEecc-------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSH-------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAIS 628 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~ 628 (829)
.........++ .++.+|+++. .+.|+.+|.++++....... ......+.+++++..+|++. .++.|+.|+
T Consensus 133 ~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d 210 (333)
T 2dg1_A 133 TAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-ISVANGIALSTDEKVLWVTETTANRLHRIA 210 (333)
T ss_dssp SCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred cCCcccceEEC-CCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-CCcccceEECCCCCEEEEEeCCCCeEEEEE
Confidence 11222233444 3567888765 36799999887765432211 11223455666566788775 467899999
Q ss_pred ccCCCceEEEee------ccCC-cceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCc------eeecCccc
Q 003331 629 VKALPFHTLWLH------ELEV-PAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGP------IFAGPCTS 694 (829)
Q Consensus 629 ~~~~~g~~~w~~------~~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~------~~~~~~~~ 694 (829)
.++. |.....+ .... .......+. .++.+|+++. ++.|.++|.+|+.+..+..... .... +.
T Consensus 211 ~~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~--~~ 286 (333)
T 2dg1_A 211 LEDD-GVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTH--PQ 286 (333)
T ss_dssp ECTT-SSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCE--EE
T ss_pred ecCC-CcCcccccceEEEecCCCCCCCceEEC-CCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcce--EE
Confidence 8631 3222111 1111 111223333 3567888875 4789999966777666654432 1111 11
Q ss_pred ccCC-CeEEEEeeCC------eEEEEeC
Q 003331 695 FALP-SQVLICSRNG------SIYSFEQ 715 (829)
Q Consensus 695 ~~~~-~~i~~~t~~g------~l~~~d~ 715 (829)
...+ +.||+++.++ .|++++.
T Consensus 287 ~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 287 FIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp ECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 2233 5899988774 4666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-07 Score=98.25 Aligned_cols=218 Identities=10% Similarity=0.055 Sum_probs=119.1
Q ss_pred EEEECCCCcEEEEEEcCCce-----eeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCC
Q 003331 499 ICADAKRSSVLWEIKLEGRI-----ECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 499 ~~~d~~tg~~~w~~~~~~~~-----~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~ 570 (829)
..+|..+|+....+...... ...+.++++++.|+..... ..|+.+|..+|+..............+.+.+++
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577777765544332211 3456788888887666543 479999998887654322222222235667778
Q ss_pred CEEEEeccCCeEEEEEcCCCeEEEeeccCCccccc-------------------ceeecCCCEEEEE-----ecCCeEEE
Q 003331 571 QLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGS-------------------PAIDEVHDVLYVA-----STSGRLTA 626 (829)
Q Consensus 571 ~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~-------------------~~~~~~~~~l~v~-----t~~g~l~~ 626 (829)
..|++.+.++.|+.+|..+|+.............. +.+.+++..+++. ..+..|+.
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 88888888889999999998765544322211000 1122222322222 23457888
Q ss_pred EEccCCCceEEEeeccCCcceeeeeeee-cCCEEEEEeeC------CeEEEEc-CCCCEEEEeecC--CceeecCccccc
Q 003331 627 ISVKALPFHTLWLHELEVPAFASLCITS-ANRHVICCLVD------GHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFA 696 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~~s~~~~~-~~~~l~~~~~~------g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~ 696 (829)
+|+.+ |+....... ......+.+.+ +++.+++.+.+ ..|+.+| .+++.. ..... ......+. ..
T Consensus 173 ~d~~~--g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~--~s 246 (396)
T 3c5m_A 173 VDIET--GELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEF--WI 246 (396)
T ss_dssp EETTT--CCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEE--EC
T ss_pred EECCC--CcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceE--EC
Confidence 99887 654433322 22234555666 45556665533 3588888 444422 22111 11111111 12
Q ss_pred CCC-eEEEEeeC-----CeEEEEeCCCCcEEE
Q 003331 697 LPS-QVLICSRN-----GSIYSFEQESGNLLW 722 (829)
Q Consensus 697 ~~~-~i~~~t~~-----g~l~~~d~~tG~~~w 722 (829)
.++ .|++.+.+ +.|+.||..+|+...
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp TTSSCEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred CCCCEEEEEecCCCCccceEEEEECCCCCeEE
Confidence 233 45555443 349999999987654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-07 Score=94.19 Aligned_cols=223 Identities=12% Similarity=0.107 Sum_probs=128.9
Q ss_pred CCeEEEEe--------cCCCcEEEEECCCCcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003331 485 SDIYLFVG--------SHSHKFICADAKRSSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 485 ~~~~l~ig--------s~~g~l~~~d~~tg~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
.++.+|++ +.++.|+.||+.+|+... +.. .........+..+++.+|+++..++|+.||.+ |+..
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFE 104 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEE
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEE
Confidence 56678877 567889999998888653 222 11112234454453689999877789999987 8875
Q ss_pred EE-EecCC----eeeeeeeeecCCCEEEEeccC----------------CeEEEEEcCCCeEEEeeccCCcccccceee-
Q 003331 552 WT-FQTCG----EVKCQPVVDAPRQLIWCGSHD----------------HNLYALDFRNYRCVYKLPCGGSIFGSPAID- 609 (829)
Q Consensus 552 w~-~~~~~----~~~~~~~~~~~~~~i~~gs~~----------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~- 609 (829)
.. ..... .......++ .++.+|+++.. +.|+.+|.. |+......... .....+++
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-~~~~i~~~~ 181 (314)
T 1pjx_A 105 EIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ-FPNGIAVRH 181 (314)
T ss_dssp ECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES-SEEEEEEEE
T ss_pred EEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC-CcceEEEec
Confidence 43 22111 111223333 45678887643 579999976 76544322111 11233445
Q ss_pred ---cCCCEEEEEe-cCCeEEEEEcc-CCCceE----EE-eeccCC-cceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCC
Q 003331 610 ---EVHDVLYVAS-TSGRLTAISVK-ALPFHT----LW-LHELEV-PAFASLCITSANRHVICCL-VDGHVVALD-SSGS 676 (829)
Q Consensus 610 ---~~~~~l~v~t-~~g~l~~~~~~-~~~g~~----~w-~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~ 676 (829)
.+++.+|++. .++.|+.|+.+ + |+. .+ ...... ......++. .++.+|+++ .+++|.++| .+|+
T Consensus 182 ~~d~dg~~l~v~~~~~~~i~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 182 MNDGRPYQLIVAETPTKKLWSYDIKGP--AKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp CTTSCEEEEEEEETTTTEEEEEEEEET--TEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBS
T ss_pred ccCCCCCEEEEEECCCCeEEEEECCCC--CccccceEEEECCCCCCCCCCceEEC-CCCCEEEEEcCCCEEEEEcCCCCc
Confidence 5445788875 46789999976 3 432 11 111111 111223333 456888886 467899999 6687
Q ss_pred EEEEeecCCceeecCcccccCCCe-EEEEee-CCeEEEEeCCC
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQ-VLICSR-NGSIYSFEQES 717 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~-i~~~t~-~g~l~~~d~~t 717 (829)
.+..+......... +....++. ||+++. ++.|+.++...
T Consensus 259 ~~~~~~~~~~~~~~--i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 259 PKMRIRCPFEKPSN--LHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CSEEEECSSSCEEE--EEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EeEEEeCCCCCcee--EEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 66555443211111 12234554 898875 46799998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-07 Score=110.05 Aligned_cols=221 Identities=10% Similarity=0.052 Sum_probs=139.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCC-----------ceeeceEEe-eCCcEEEEEEeCCEEEEEEcCCCcEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEG-----------RIECSAAVL-ADFSQVVVGCYKGKIYFLDYLTGDIYW 552 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-----------~~~~~~~~~-~~~~~v~vg~~dg~l~~~d~~tG~~~w 552 (829)
++..|..+ .++.|+.||..++++. .+..+. ....++.++ +++..+++++ ++.|+.++..+++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE
T ss_pred CCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE
Confidence 34445444 4678999998655443 332211 123467788 8888787776 8899999998887654
Q ss_pred EEecCCe-eeeeeeeecCCCEEEEeccCCeEE-EEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 553 TFQTCGE-VKCQPVVDAPRQLIWCGSHDHNLY-ALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 553 ~~~~~~~-~~~~~~~~~~~~~i~~gs~~g~l~-~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
...+.. ....+.+. ++..+++++.++.++ .+|..+++..... .+......+.+++++..|++++.++.++.||++
T Consensus 332 -~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~ 408 (1045)
T 1k32_A 332 -VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE 408 (1045)
T ss_dssp -CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred -ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence 222222 33445566 556677777788899 9999888765433 333344567778878899999999999999998
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC----------eEEEEc-CCCCEEEEeecCC-ceeecCcccccCC
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG----------HVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALP 698 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g----------~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~ 698 (829)
+ |+................+++++..+++++.++ .|+.+| .+|+ ........ .... +... ..+
T Consensus 409 t--g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~-~~~s-pdG 483 (1045)
T 1k32_A 409 T--GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYA-PAFD-ADS 483 (1045)
T ss_dssp T--CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEE-EEEC-TTS
T ss_pred C--CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCC-ceEc-CCC
Confidence 7 766554433333345677788888887776543 899999 7666 33332222 1211 1111 123
Q ss_pred CeEEEEeeCCeEEEEeCC
Q 003331 699 SQVLICSRNGSIYSFEQE 716 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~ 716 (829)
..|++++.++....|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 457777776655555543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-07 Score=92.59 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=126.1
Q ss_pred cceEEeeCCCeEEEE-e-cCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE
Q 003331 477 SPLVVLKDSDIYLFV-G-SHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT 553 (829)
Q Consensus 477 sp~v~~~d~~~~l~i-g-s~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~ 553 (829)
.|.-+.-+.++.+|+ + +.++.|+.||..++... ...... ......++..++ .+|+++.++.|+.||..++.. +.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTCSCC-EE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCC-CEEEEcCCCEEEEEeCCCceE-ee
Confidence 343333445677998 7 56788999998765532 222221 112244555554 588887788999999765543 33
Q ss_pred EecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEcc
Q 003331 554 FQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVK 630 (829)
Q Consensus 554 ~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~ 630 (829)
+...+ .......++. ++.+|++. .++.|+.+|..+................++++. ++.+|++.. ++.|+.++.+
T Consensus 102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTT
T ss_pred eecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecC
Confidence 33222 1222333443 45678764 467899998766544432222212233455555 355888765 5789999987
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecC-cccccCCCeEEEEe-eC
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICS-RN 707 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t-~~ 707 (829)
+ +................++.. ++.+|+++. ++.|..++.++.........+ +..+ .+..+.++.+|++. .+
T Consensus 180 ~--~~~~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~--~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 180 S--NNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG--LNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp T--CCEEECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCCCS--CSCEEEEEECTTCCEEEEEGGG
T ss_pred C--CceEeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeeccCC--CCCceeEEECCCCCEEEEECCC
Confidence 5 333222111112223334433 458888875 578999994444433332211 1111 12234466788775 46
Q ss_pred CeEEEEeCCCCc
Q 003331 708 GSIYSFEQESGN 719 (829)
Q Consensus 708 g~l~~~d~~tG~ 719 (829)
+.|..++....+
T Consensus 255 ~~v~~~~~~~~~ 266 (270)
T 1rwi_B 255 DRVVKLTSLEHH 266 (270)
T ss_dssp TEEEEECCCGGG
T ss_pred CEEEEEcCCCcc
Confidence 788888876544
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-06 Score=89.12 Aligned_cols=275 Identities=12% Similarity=0.071 Sum_probs=144.0
Q ss_pred cEEEEEEeC----CEEEE--EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC----CeEEEEE--cCCCeEEEe-
Q 003331 529 SQVVVGCYK----GKIYF--LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD----HNLYALD--FRNYRCVYK- 595 (829)
Q Consensus 529 ~~v~vg~~d----g~l~~--~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~----g~l~~~d--~~tg~~~w~- 595 (829)
..+|+|++. +.|+. +|.++|+................+++++..||+++.+ +.+..|+ ..+|+....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 368888774 35554 5667888765443322222334667777889998875 6776655 445765432
Q ss_pred -eccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEE-----eeccCC--------cceeeeeeeecCCEEE
Q 003331 596 -LPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLW-----LHELEV--------PAFASLCITSANRHVI 660 (829)
Q Consensus 596 -~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w-----~~~~~~--------~~~~s~~~~~~~~~l~ 660 (829)
....+.......+ +++.+|++.. ++.+..|++.+. |.... ...... +......+.+++..++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 2222222222233 4578888774 678999998741 32110 011000 1113456777788788
Q ss_pred EEee-CCeEEEEc-C--CC----C-E-------EEEeecCCceeecCcccccCCC-eEEEEe-eCCeEEEEeCCCCcEEE
Q 003331 661 CCLV-DGHVVALD-S--SG----S-I-------IWRCRTGGPIFAGPCTSFALPS-QVLICS-RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 661 ~~~~-~g~i~~~d-~--~g----~-~-------~w~~~~~~~~~~~~~~~~~~~~-~i~~~t-~~g~l~~~d~~tG~~~w 722 (829)
++.. ++.+.+|+ . ++ + + ......+..... +....++ .+|+.+ .++.|..|+..+|++..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRH---LIFNSDGKFAYLINEIGGTVIAFRYADGMLDE 247 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEE---EEECTTSSEEEEEETTTCEEEEEEEETTEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeE---EEEcCCCCEEEEEcCCCCeEEEEEecCCceEE
Confidence 7764 67788876 3 33 2 2 112222221111 1223344 588877 57899999988887643
Q ss_pred EEecC--CccccccccccccccccccccCCCcEEEEEccC--CcEEEEEeecCccccccccccccceeeeeeccCCcccc
Q 003331 723 EYSVG--DPITASAYIDEHLQLKLESCLSIDRLVCICTSS--GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS 798 (829)
Q Consensus 723 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (829)
..... ..-...+. ......++.++|++..+ +.|.+|+.+.. .+. ......... +....
T Consensus 248 ~~~~~~~~~~~~~~~--------~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~--------~~~~~~~~~-g~~~~ 309 (361)
T 3scy_A 248 IQTVAADTVNAQGSG--------DIHLSPDGKYLYASNRLKADGVAIFKVDET-NGT--------LTKVGYQLT-GIHPR 309 (361)
T ss_dssp EEEEESCSSCCCCEE--------EEEECTTSSEEEEEECSSSCEEEEEEECTT-TCC--------EEEEEEEEC-SSCCC
T ss_pred eEEEecCCCCCCCcc--------cEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCc--------EEEeeEecC-CCCCc
Confidence 32211 11000000 01122347778887765 78999988521 000 012222222 21112
Q ss_pred cceE--ECCEEEEee-eCCeEEE--Eeccccccc
Q 003331 799 SPVM--IGGRVFVGC-RDDYIYC--IALETQHLE 827 (829)
Q Consensus 799 s~~~--~~~~l~vg~-~~g~l~~--~d~~tg~~~ 827 (829)
...+ ++..||+++ .++.+.. +|.++|+++
T Consensus 310 ~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 310 NFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 2222 345788887 4566666 677788764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-06 Score=90.14 Aligned_cols=213 Identities=13% Similarity=0.093 Sum_probs=124.2
Q ss_pred cEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCc--EEEEEecC-------Ce--eeee
Q 003331 497 KFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGD--IYWTFQTC-------GE--VKCQ 563 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~--~~w~~~~~-------~~--~~~~ 563 (829)
.|+.+|..+|++...+.... ......++..++. +|+.. .++.|+.||. +|+ .+..+... +. ....
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcE
Confidence 69999999999875543221 1123455666655 66654 4689999996 454 45544321 11 1233
Q ss_pred eeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCc----------ccccceeecCCCEEEEEec-CCeEEEEEcc
Q 003331 564 PVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGS----------IFGSPAIDEVHDVLYVAST-SGRLTAISVK 630 (829)
Q Consensus 564 ~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~----------~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~ 630 (829)
.+++++++.+|+.. .++.|+.|| .+|+.++.+...+. ....++++++++.+|++.. ++.|..|+++
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~ 226 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD 226 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC
Confidence 44554367777776 378999999 67888877643221 1234566765588888764 6689999988
Q ss_pred CCCceEEEeeccCC--cceeeeeeeecCCEEEEEe--------eCCeEEEEc-CCCCEEEEeecCCceeecC-cccccCC
Q 003331 631 ALPFHTLWLHELEV--PAFASLCITSANRHVICCL--------VDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALP 698 (829)
Q Consensus 631 ~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~--------~~g~i~~~d-~~g~~~w~~~~~~~~~~~~-~~~~~~~ 698 (829)
+ |+.+..+.... .......+.+ +.++... .+..++.++ .+|+++..+......+..| .+..+.+
T Consensus 227 ~--G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 227 T--KEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED 302 (329)
T ss_dssp T--CCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred C--CcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence 6 77776664321 1112222322 3443332 234688899 8888877654222212222 1234446
Q ss_pred CeEEEEe-eCCeEEEEeCC
Q 003331 699 SQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 699 ~~i~~~t-~~g~l~~~d~~ 716 (829)
+.+|++. .++.|..|+..
T Consensus 303 G~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp SEEEEEESSSCCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEeCC
Confidence 6777764 35567777643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.9e-07 Score=87.64 Aligned_cols=179 Identities=10% Similarity=0.020 Sum_probs=127.7
Q ss_pred CeEEEEecC---CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC-Cee
Q 003331 486 DIYLFVGSH---SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC-GEV 560 (829)
Q Consensus 486 ~~~l~igs~---~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~-~~~ 560 (829)
++.||+++. ++.|..+|+.||+++.+..++.... ...+..+++.+|+.++ ++.+..+|.+|++++.++..+ ..-
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g 109 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG 109 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe
Confidence 369999874 4789999999999998887765432 2234445679999886 578999999999999988766 321
Q ss_pred eeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--cc---ccceeecCCCEEEEEec-CCeEEEEEccCCCc
Q 003331 561 KCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--IF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPF 634 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g 634 (829)
. .+..+++.+|++..++.|+.+|+++.+.+-++..+.. .. ....+. ++.+|+..+ ++.|.++|+++ |
T Consensus 110 --~-glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~t--g 182 (266)
T 2iwa_A 110 --W-GLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKD--G 182 (266)
T ss_dssp --C-EEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTT--C
T ss_pred --E-EEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCC--C
Confidence 1 1333567888887788999999999998887765421 11 112233 378999885 57899999998 8
Q ss_pred eEEEeeccCC-------------cceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003331 635 HTLWLHELEV-------------PAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 635 ~~~w~~~~~~-------------~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
+.+-.+.... ......++.++++++|+... .+.++.++
T Consensus 183 ~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~ 234 (266)
T 2iwa_A 183 TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK 234 (266)
T ss_dssp CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence 8776665431 12245567777888888764 46777777
|
| >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-09 Score=86.24 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=59.9
Q ss_pred cccHHHHHHHHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 286 KASDLLQVIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
....+++.++++|+++|+. +.++++++||++|+|||.|++|...| .++...+|++||+..|+.++.+.
T Consensus 17 ~~~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~ 93 (95)
T 2ju1_A 17 RTAELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAE 93 (95)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHHHHHHH
Confidence 3456888999999999993 67999999999999999999999876 47888999999999999998764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-06 Score=90.19 Aligned_cols=214 Identities=15% Similarity=0.100 Sum_probs=125.9
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-CEEEEEEcCCCcEEEEEec-CCee---e
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQT-CGEV---K 561 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~-~~~~---~ 561 (829)
..+|++..++.|+.||. +|+.. .+...........+..++ .+|+++.. +.|+.+|.. |+....... .+.. .
T Consensus 58 ~l~~~d~~~~~i~~~~~-~g~~~-~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~ 133 (305)
T 3dr2_A 58 TLVWSDLVGRRVLGWRE-DGTVD-VLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSP 133 (305)
T ss_dssp EEEEEETTTTEEEEEET-TSCEE-EEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCC
T ss_pred EEEEEECCCCEEEEEeC-CCCEE-EEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCC
Confidence 36788888899999998 56543 233333333345565554 57887654 789999975 776443221 1111 1
Q ss_pred eeeeeecCCCEEEE-----ecc-------------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--
Q 003331 562 CQPVVDAPRQLIWC-----GSH-------------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS-- 621 (829)
Q Consensus 562 ~~~~~~~~~~~i~~-----gs~-------------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-- 621 (829)
...+++ .++.+|+ |+. .+.|+.+|+++|+..... .......+++++++..+|++...
T Consensus 134 ~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~ 210 (305)
T 3dr2_A 134 NDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQ 210 (305)
T ss_dssp CCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC-
T ss_pred CCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCc
Confidence 122333 4677888 442 357999999888754332 11122345677767789988765
Q ss_pred ----CeEEEEEccCCCceEEEee----ccCCcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcc
Q 003331 622 ----GRLTAISVKALPFHTLWLH----ELEVPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCT 693 (829)
Q Consensus 622 ----g~l~~~~~~~~~g~~~w~~----~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~ 693 (829)
+.|++++.+. +. +... ...........+. .++.+|+++ .++|++|+.+|+.+..+.....+.+. .
T Consensus 211 ~~~~~~i~~~~~~~--~~-l~~~~~~~~~~~~~pdgi~~d-~~G~lwv~~-~~gv~~~~~~g~~~~~~~~~~~~~~~--~ 283 (305)
T 3dr2_A 211 GHGSVEITAFAWRD--GA-LHDRRHFASVPDGLPDGFCVD-RGGWLWSSS-GTGVCVFDSDGQLLGHIPTPGTASNC--T 283 (305)
T ss_dssp --CCCEEEEEEEET--TE-EEEEEEEECCSSSCCCSEEEC-TTSCEEECC-SSEEEEECTTSCEEEEEECSSCCCEE--E
T ss_pred CCCCCEEEEEEecC--CC-ccCCeEEEECCCCCCCeEEEC-CCCCEEEec-CCcEEEECCCCCEEEEEECCCceeEE--E
Confidence 6899999875 32 1110 1111111123333 456699998 45799999778887776655422111 1
Q ss_pred cccCCCeEEEEeeCCeEEEEeC
Q 003331 694 SFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 694 ~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
....++.||+++.+ .|++++.
T Consensus 284 f~~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 284 FDQAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp ECTTSCEEEEEETT-EEEEEEC
T ss_pred EeCCCCEEEEEcCC-eEEEEEC
Confidence 11234579988864 6888874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.5e-07 Score=100.39 Aligned_cols=225 Identities=9% Similarity=0.009 Sum_probs=134.8
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe---CC--EEEEEEc-CCCcEEEEEecC
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY---KG--KIYFLDY-LTGDIYWTFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~---dg--~l~~~d~-~tG~~~w~~~~~ 557 (829)
++..|..++. +|.+..|+..+|+.......+.....++.++++ ..+|++.. +. .|+.++. .+|... .....
T Consensus 32 DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~ 109 (582)
T 3o4h_A 32 DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV 109 (582)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS
T ss_pred CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC
Confidence 4455555554 888888988777654322222233446667766 66776654 22 6778886 134333 22222
Q ss_pred CeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC----CeEEEEEccCC
Q 003331 558 GEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS----GRLTAISVKAL 632 (829)
Q Consensus 558 ~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~----g~l~~~~~~~~ 632 (829)
.... ...+..+ ++.+++...++.+..||.++|+......... .++.+++++..|+.++.+ +.|+.+|+++
T Consensus 110 ~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~- 184 (582)
T 3o4h_A 110 KPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS- 184 (582)
T ss_dssp CSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTT-
T ss_pred CCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC-
Confidence 2222 2234433 4556666666677799999998765544333 566777778888876665 6799999887
Q ss_pred CceEEEeeccCCcceeeeeeeecCCEEEEEeeCC--eEEEEc-CCCCEEEEeecCCceeecCc------ccccCCCe-EE
Q 003331 633 PFHTLWLHELEVPAFASLCITSANRHVICCLVDG--HVVALD-SSGSIIWRCRTGGPIFAGPC------TSFALPSQ-VL 702 (829)
Q Consensus 633 ~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g--~i~~~d-~~g~~~w~~~~~~~~~~~~~------~~~~~~~~-i~ 702 (829)
|+.. ..........++.+++++..++.+..++ .|+.+| .+|+.. ...........+. .....++. ++
T Consensus 185 -g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 261 (582)
T 3o4h_A 185 -GGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAV 261 (582)
T ss_dssp -CCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEE
T ss_pred -CCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEE
Confidence 6544 2222333346788888999999776777 899999 778776 4332211111111 00122444 45
Q ss_pred EEeeCCeEEEEeCCCCcEE
Q 003331 703 ICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~ 721 (829)
.++.+|.+..|+. |+.+
T Consensus 262 ~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 262 VARREGRSAVFID--GERV 278 (582)
T ss_dssp EEEETTEEEEEET--TEEE
T ss_pred EEEcCCcEEEEEE--CCee
Confidence 5677899999997 7654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-06 Score=89.50 Aligned_cols=223 Identities=10% Similarity=0.078 Sum_probs=128.6
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-CeEEEEEcCCCeEEEeecc
Q 003331 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-HNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-g~l~~~d~~tg~~~w~~~~ 598 (829)
.+++..+++ .+|++..++.|+.|+. +|+.. .+...........++. ++.+|+++.. +.|+.+|.. |+.......
T Consensus 49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~ 124 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGR 124 (305)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECE
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEec
Confidence 466666766 5667777889999997 66643 2322333333344444 4568887654 689999976 765433221
Q ss_pred -CCc---ccccceeecCCCEEEEE-----ec-------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC
Q 003331 599 -GGS---IFGSPAIDEVHDVLYVA-----ST-------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN 656 (829)
Q Consensus 599 -~~~---~~~~~~~~~~~~~l~v~-----t~-------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 656 (829)
.+. ....++++. ++.+|+. +. .+.|+.+|+++ |+........ .....++.+++
T Consensus 125 ~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~--~p~gl~~spdg 199 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLD--HPNGLAFSPDE 199 (305)
T ss_dssp ETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCEEEEEES--SEEEEEECTTS
T ss_pred cCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEEEEecCC--CCcceEEcCCC
Confidence 111 123445555 5678883 32 35799999876 5432211221 12345677778
Q ss_pred CEEEEEeeC------CeEEEEc-CCCCEEEEeec--CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecC
Q 003331 657 RHVICCLVD------GHVVALD-SSGSIIWRCRT--GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 657 ~~l~~~~~~------g~i~~~d-~~g~~~w~~~~--~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
..+|++... +.|++++ ..+. +..... .........+..+.+|.+|+++.+ +|++|++ +|+.+..+..+
T Consensus 200 ~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~ 276 (305)
T 3dr2_A 200 QTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTP 276 (305)
T ss_dssp SEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECS
T ss_pred CEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECC
Confidence 888888765 6899998 4433 211110 000001112345667889999954 5999998 58877776655
Q ss_pred CccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 728 DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.......+. .+++.+|+++.+ .|+.++.
T Consensus 277 ~~~~~~~f~------------~d~~~L~it~~~-~l~~~~~ 304 (305)
T 3dr2_A 277 GTASNCTFD------------QAQQRLFITGGP-CLWMLPL 304 (305)
T ss_dssp SCCCEEEEC------------TTSCEEEEEETT-EEEEEEC
T ss_pred CceeEEEEe------------CCCCEEEEEcCC-eEEEEEC
Confidence 432221111 236789998865 5887753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=9.6e-07 Score=92.36 Aligned_cols=260 Identities=9% Similarity=-0.125 Sum_probs=158.7
Q ss_pred CeEEEEecCC-C----cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcE
Q 003331 486 DIYLFVGSHS-H----KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDI 550 (829)
Q Consensus 486 ~~~l~igs~~-g----~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~ 550 (829)
..++|+.... + .|..+|..|++++-++..+... ...++++++.+|+++. ++.|..||+.|+++
T Consensus 31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v 108 (368)
T 1mda_H 31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP 108 (368)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred CCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence 3457776542 2 7889999999999988887664 5788899999999973 57899999999999
Q ss_pred EEEEecCC-------eeeeeeeeecCCCEEEEecc--CCeEEE--EEcCCCeEEEeeccCCcccccceeecCCCEEEE-E
Q 003331 551 YWTFQTCG-------EVKCQPVVDAPRQLIWCGSH--DHNLYA--LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYV-A 618 (829)
Q Consensus 551 ~w~~~~~~-------~~~~~~~~~~~~~~i~~gs~--~g~l~~--~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v-~ 618 (829)
+.++..++ .-.....++++++.+|++.. +..+.. +|..+ +..+..++... +..+++..|+ .
T Consensus 109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~----~~p~g~~~~~~~ 181 (368)
T 1mda_H 109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFH----IHPGAAATHYLG 181 (368)
T ss_dssp EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCC----CEEEETTEEECC
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceE----EccCCCeEEEEE
Confidence 99887651 11233456778889999864 356777 88877 34444433211 1222333443 4
Q ss_pred ecCCeEEEEEccC---CCceEEEeec----cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCC--EE--EEeecC--
Q 003331 619 STSGRLTAISVKA---LPFHTLWLHE----LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGS--II--WRCRTG-- 684 (829)
Q Consensus 619 t~~g~l~~~~~~~---~~g~~~w~~~----~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~--~~--w~~~~~-- 684 (829)
+.+|.+..++.++ ..++..|... .+.... . ..+++.+|+.+. +.++.+| .++. .+ |.+...
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~ 256 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccc
Confidence 5678888888763 0144443211 111111 2 456677777777 9999999 5432 21 322110
Q ss_pred ---C-ceeecCccc-ccCCCeEEEEee-C--------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003331 685 ---G-PIFAGPCTS-FALPSQVLICSR-N--------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 685 ---~-~~~~~~~~~-~~~~~~i~~~t~-~--------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
+ .......+. ...++.+|++.. + +.+..+|.++++.+-++..+.......+. .+
T Consensus 257 ~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s------------~D 324 (368)
T 1mda_H 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA------------QD 324 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEEC------------CS
T ss_pred cccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEEC------------CC
Confidence 0 000000011 123468998765 3 36789999999987665544322211111 12
Q ss_pred CcEEEEEcc--CCcEEEEEeecC
Q 003331 751 DRLVCICTS--SGSIHILRVNLD 771 (829)
Q Consensus 751 ~~~l~~~~~--~G~l~~~d~~~~ 771 (829)
+..+|+.+. ++.|.++|..++
T Consensus 325 g~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 325 GASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp SSCEEEEEETTTTEEEEEESSSC
T ss_pred CCEEEEEccCCCCeEEEEECCCC
Confidence 555565554 899999999876
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.75 E-value=9e-07 Score=85.97 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=119.9
Q ss_pred CeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003331 486 DIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
++.||+++.+ ..|..+|++||+++-+..++.... ...+..+++.||+.++ ++.++.||++|++++-++..+..-.
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F-geGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF-GEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC-EEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc-eeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce
Confidence 4689998853 379999999999999888876542 2234445679999986 6789999999999999988765321
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC--Cccccc---ceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG--GSIFGS---PAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~--~~~~~~---~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
.+..+++.+|+...++.|+.+|++|.+.+-++... +..... .... ++.||+..+ ++.|.++|+++ |+
T Consensus 131 ---glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~t--G~ 203 (262)
T 3nol_A 131 ---GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPET--GK 203 (262)
T ss_dssp ---CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTT--CB
T ss_pred ---EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCC--Cc
Confidence 12234678888877788999999999988876653 222211 2233 478999885 67899999998 88
Q ss_pred EEEeeccCC------------cceeeeeeeecCCEEEEEe
Q 003331 636 TLWLHELEV------------PAFASLCITSANRHVICCL 663 (829)
Q Consensus 636 ~~w~~~~~~------------~~~~s~~~~~~~~~l~~~~ 663 (829)
.+-.++... .....+++.++.+++|+.+
T Consensus 204 V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 204 VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 776665531 1223445555566666654
|
| >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=82.78 Aligned_cols=69 Identities=17% Similarity=0.268 Sum_probs=60.8
Q ss_pred ccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcc--hhhhcCCCHHHHHHHHHhh
Q 003331 285 TKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDM--RLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~--~~~~~~pt~~~la~~l~~~ 353 (829)
.+.+++++.++++|+++|+. +.+.++++||++|+|||.+++|..+| .++. ..+|++||+..|+.++.+.
T Consensus 7 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~l~~~ 85 (89)
T 2kr5_A 7 GVSNEKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGS 85 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHHHHHh
Confidence 44568899999999999998 67999999999999999999998865 3677 8899999999999998763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-06 Score=85.14 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=114.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC---eee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---EVK 561 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~---~~~ 561 (829)
.+..+|+...++.|+.||+.+++.. .+..+..+ ....+..++. +|++. +++|+.||.++|+......... ...
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~-~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~ 99 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPV-SSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDKKNNR 99 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCE-EEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCce-EEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCC
Confidence 3445666667889999999988763 23444433 3456666655 78876 6789999999998765433221 111
Q ss_pred eeeeeecCCCEEEEecc------------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEE
Q 003331 562 CQPVVDAPRQLIWCGSH------------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAIS 628 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~------------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~ 628 (829)
..-+..+.++.+|+++. .+.||.+|.. |+...... .......+++++++..+|+.. .++.|++++
T Consensus 100 ~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~-~~~~pngi~~spdg~~lyv~~~~~~~i~~~~ 177 (297)
T 3g4e_A 100 FNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD-QVDISNGLDWSLDHKIFYYIDSLSYSVDAFD 177 (297)
T ss_dssp EEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE-EESBEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee-ccccccceEEcCCCCEEEEecCCCCcEEEEe
Confidence 12222334567898863 3578999865 44332211 111223456666667787654 467899998
Q ss_pred ccCCCceEE-----EeeccCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecC
Q 003331 629 VKALPFHTL-----WLHELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 629 ~~~~~g~~~-----w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~ 684 (829)
.+..+|... ..+..........++. .++.+|+++.. +.|.++| .+|+++-.+..+
T Consensus 178 ~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 178 YDLQTGQISNRRSVYKLEKEEQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp ECTTTCCEEEEEEEEECCGGGCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred ccCCCCcccCcEEEEECCCCCCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 742236432 1111111111233333 45689998764 5699999 679988776654
|
| >2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=84.65 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..+.+++.++++|+++|++ +.+..+++||++|+|||.+++|...| .++...+|++||+..|+.++.+..
T Consensus 18 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~~l~~~~ 94 (99)
T 2liu_A 18 NLSEIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSGYIAQIL 94 (99)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHh
Confidence 4567899999999999998 77999999999999999999998765 478889999999999999987653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7e-06 Score=85.34 Aligned_cols=191 Identities=14% Similarity=0.113 Sum_probs=113.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC----ee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG----EV 560 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~----~~ 560 (829)
.+..+|+...++.|+.||..+++.. .+..+..+ .+..+..+ +.+|+++ +.+|+.||..+|+......... ..
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-~~i~~~~d-g~l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~ 135 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKISD-SKQLIAS-DDGLFLRDTATGVLTLHAELESDLPGNR 135 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEET-TEEEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-eEEEEeCC-CeEEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCC
Confidence 3556777777889999999988754 23334332 34455566 5678877 5569999999998754333211 11
Q ss_pred eeeeeeecCCCEEEEecc-------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCC
Q 003331 561 KCQPVVDAPRQLIWCGSH-------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKAL 632 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~ 632 (829)
.....++ .++.+|+++. .+.|+.+| +|+...... .......++++.++..+|++. .++.|++++.+..
T Consensus 136 ~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~ 211 (326)
T 2ghs_A 136 SNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 211 (326)
T ss_dssp EEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred CCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc
Confidence 2223344 4566888764 36799999 576543221 111223456666667787765 4678999998611
Q ss_pred Cc-e----EEE-eeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecC
Q 003331 633 PF-H----TLW-LHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 633 ~g-~----~~w-~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~ 684 (829)
+| + ..+ .............+ ..++.+|+++. +++|+++|.+|+.+..+..+
T Consensus 212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~-d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 212 TGLPTGKAEVFIDSTGIKGGMDGSVC-DAEGHIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp TCCBSSCCEEEEECTTSSSEEEEEEE-CTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred cCCcccCceEEEECCCCCCCCCeeEE-CCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 25 3 122 11111111122233 34568999875 47899999667776555543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.72 E-value=2.6e-06 Score=87.26 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=116.7
Q ss_pred ceEEeeCCcE-EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 521 SAAVLADFSQ-VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~~-v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.+..+++. +|+...++.|++||..+++.. .+.....+ ....++.+ +.+|+++ ++.|+.+|.++|+........
T Consensus 17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~-~~i~~~~d-G~l~v~~-~~~l~~~d~~~g~~~~~~~~~ 92 (297)
T 3g4e_A 17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPV-SSVALRQS-GGYVATI-GTKFCALNWKEQSAVVLATVD 92 (297)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEECSSCE-EEEEEBTT-SSEEEEE-TTEEEEEETTTTEEEEEEECC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeCCCce-EEEEECCC-CCEEEEE-CCeEEEEECCCCcEEEEEecC
Confidence 4566654444 455556789999999888763 23334333 33344444 4488876 568999999999865443321
Q ss_pred ----CcccccceeecCCCEEEEEec------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe
Q 003331 600 ----GSIFGSPAIDEVHDVLYVAST------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL 663 (829)
Q Consensus 600 ----~~~~~~~~~~~~~~~l~v~t~------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~ 663 (829)
........+++ ++.+|+++. .+.|+.++.+ |+...... ........++.++++.+|+..
T Consensus 93 ~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~~~~-~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 93 NDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPD---HHVKKYFD-QVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp TTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTT---SCEEEEEE-EESBEEEEEECTTSCEEEEEE
T ss_pred CCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECC---CCEEEEee-ccccccceEEcCCCCEEEEec
Confidence 11223345555 466888873 3468888765 33221111 111123456666777777664
Q ss_pred -eCCeEEEEc---CCCCEEEE--e-ecCCceeecCcccccCCCeEEEEeeC-CeEEEEeCCCCcEEEEEecCC
Q 003331 664 -VDGHVVALD---SSGSIIWR--C-RTGGPIFAGPCTSFALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 664 -~~g~i~~~d---~~g~~~w~--~-~~~~~~~~~~~~~~~~~~~i~~~t~~-g~l~~~d~~tG~~~w~~~~~~ 728 (829)
.++.|++++ .+|.+... + ...........+..+.+|.+|+++.+ +.|++||+++|+++-.+..+.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~ 240 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV 240 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSS
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC
Confidence 467888886 46654211 1 11100000111235567899999864 569999999999987777653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.7e-06 Score=86.55 Aligned_cols=228 Identities=11% Similarity=-0.000 Sum_probs=129.4
Q ss_pred CCe-EEEEecCCCcEEEEECCCCcEE-EEEEcC--------C----------ceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 485 SDI-YLFVGSHSHKFICADAKRSSVL-WEIKLE--------G----------RIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 485 ~~~-~l~igs~~g~l~~~d~~tg~~~-w~~~~~--------~----------~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
.++ .+|+++.++.|+.||..+++.. |..... + .......+..+++.||++...++|+.+|
T Consensus 28 ~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d 107 (322)
T 2fp8_A 28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVG 107 (322)
T ss_dssp TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEe
Confidence 344 4999999999999998876643 322110 0 0112233443357899998788899999
Q ss_pred cCCCcEEEEEe-cCCee--eeeeeeecC-CCEEEEeccC------------------CeEEEEEcCCCeEEEeeccCCcc
Q 003331 545 YLTGDIYWTFQ-TCGEV--KCQPVVDAP-RQLIWCGSHD------------------HNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 545 ~~tG~~~w~~~-~~~~~--~~~~~~~~~-~~~i~~gs~~------------------g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
..+|+...... ..+.. ...-+..+. ++.+|++... +.|+.+|+.+++....... ...
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~ 186 (322)
T 2fp8_A 108 SEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHV 186 (322)
T ss_dssp TTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESC
T ss_pred CCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-Ccc
Confidence 87775432211 11111 111223334 6789987543 6799999988875432211 111
Q ss_pred cccceeecCCCEEEEEe-cCCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecCCEEEEEeeC-----------CeEE
Q 003331 603 FGSPAIDEVHDVLYVAS-TSGRLTAISVKALP-FHTLWLHELEVPAFASLCITSANRHVICCLVD-----------GHVV 669 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-----------g~i~ 669 (829)
...++++++++.+|++. ..+.|++++.++.. +.......... .....+. .++.+|++... +.|+
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d-~~G~l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRN-ADGHFWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEEC-TTSCEEEEEEEETTSSTTSCEEEEEE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEEC-CCCCEEEEecCcccccccCCCccEEE
Confidence 22345666567898884 45789999987411 12111111211 2233333 35679998754 5789
Q ss_pred EEcCCCCEEEEeecCCce-eecCcccccCCCeEEEEe-eCCeEEEEeCC
Q 003331 670 ALDSSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 670 ~~d~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
++|.+|+.+-.+...... +..+......++.||+++ .++.|.+++..
T Consensus 264 ~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 264 KFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred EECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence 999778877665543211 122211122367888886 35678888764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.5e-06 Score=94.74 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=133.3
Q ss_pred eceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc---CC--eEEEEEc--CCCe
Q 003331 520 CSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH---DH--NLYALDF--RNYR 591 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~---~g--~l~~~d~--~tg~ 591 (829)
.+..++.||+.|+.++. ++.+..|+..+|+.......+......+.++++ ..+|+++. +. .|+.++. ..+.
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~ 103 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEE 103 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCC
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCcc
Confidence 35677889888887766 899989988677664432222234455666655 56666553 22 5777776 4333
Q ss_pred EEEeeccCCcccccceeecCCC-EEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC----C
Q 003331 592 CVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD----G 666 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~----g 666 (829)
. ......... ...+..+++ .+++...++.+..||+++ |+......... .++.+++++..+++++.+ .
T Consensus 104 ~--~l~~~~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~--g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 104 Q--RLEAVKPMR-ILSGVDTGEAVVFTGATEDRVALYALDG--GGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp E--ECTTSCSBE-EEEEEECSSCEEEEEECSSCEEEEEEET--TEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEE
T ss_pred c--cccCCCCce-eeeeCCCCCeEEEEecCCCCceEEEccC--CcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCe
Confidence 3 222111111 224444444 566666666677999987 66443332222 567788899999877765 6
Q ss_pred eEEEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEEeeCC--eEEEEeCCCCcEEEEEecCCcccccccccccccc
Q 003331 667 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLICSRNG--SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQL 742 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~ 742 (829)
.|+.+| .+|+.. ...........+.. ..|| .|+.+..+| .|+.||.++|+.. ...........+... ..
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~---~~ 248 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASI--SPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT---AI 248 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEE--CTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS---EE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceE--CCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc---cc
Confidence 799999 777765 33222222222222 2244 566555667 8999999999887 332222111111100 00
Q ss_pred ccccccCCCcEEEEEccCCcEEEEEe
Q 003331 743 KLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
......+++..++.++.+|.+.+|+.
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 00001233666777888999999987
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.5e-06 Score=82.14 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=110.0
Q ss_pred CeEEEEecCC---CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003331 486 DIYLFVGSHS---HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 486 ~~~l~igs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
+++||.++.. ..|..+|+.||+++-+..++..... ..+...++.||+.++ ++.++.||.+|++++-++..++.-.
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fg-eGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw 108 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFG-AGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW 108 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcce-eEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce
Confidence 4789998864 3799999999999998888765432 233445678999875 6789999999999999988765322
Q ss_pred eeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccc-eeecCCCEEEEEec-CCeEEEEEccCCCceEE
Q 003331 562 CQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSP-AIDEVHDVLYVAST-SGRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~-~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~ 637 (829)
.+..+++.+|++..++.|+.+|++|.+.+-++.... .....+ -+.-.++.||+..+ +..|.++|+++ |+.+
T Consensus 109 ---glt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~t--G~V~ 183 (243)
T 3mbr_X 109 ---ALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPAS--GKVV 183 (243)
T ss_dssp ---EEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTT--CBEE
T ss_pred ---EEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCC--CCEE
Confidence 122356789998888899999999999887776532 111111 11112588999885 66899999998 8877
Q ss_pred Eeecc
Q 003331 638 WLHEL 642 (829)
Q Consensus 638 w~~~~ 642 (829)
-.++.
T Consensus 184 ~~idl 188 (243)
T 3mbr_X 184 AWIDL 188 (243)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-06 Score=89.72 Aligned_cols=218 Identities=13% Similarity=0.126 Sum_probs=123.3
Q ss_pred CCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCe-EEEeeccC-------C--cccc
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYR-CVYKLPCG-------G--SIFG 604 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~-~~w~~~~~-------~--~~~~ 604 (829)
++.|+.||..+|+++..+.... ......+++.++. +|+. +.++.|+.||..... .+..+... . ....
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc
Confidence 5679999998999876554222 1122334554444 6665 556889999975432 44443211 1 1122
Q ss_pred cceeecCCCEEEEEe--cCCeEEEEEccCCCceEEEeeccCCc----------ceeeeeeeecCCEEEEEee-CCeEEEE
Q 003331 605 SPAIDEVHDVLYVAS--TSGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLV-DGHVVAL 671 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t--~~g~l~~~~~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~l~~~~~-~g~i~~~ 671 (829)
.++++++++.+|++. .++.|+.|+.+ |+.++.+..... .....++.++++.+|++.. ++.|.+|
T Consensus 147 ~ia~~~~~g~lyv~d~~~~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~ 223 (329)
T 3fvz_A 147 DVAVEPSTGAVFVSDGYCNSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223 (329)
T ss_dssp EEEECTTTCCEEEEECSSCCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence 345665467788877 37889999954 777766532211 1234555556588888764 6789999
Q ss_pred c-CCCCEEEEeecC---Cceee---cCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccc---ccccccc
Q 003331 672 D-SSGSIIWRCRTG---GPIFA---GPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITAS---AYIDEHL 740 (829)
Q Consensus 672 d-~~g~~~w~~~~~---~~~~~---~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~---~~~~~~~ 740 (829)
+ .+|+.+..+... ..++. .|-+....++.+|++. .++.++.||..+|+++..+......... ..++.
T Consensus 224 ~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-- 301 (329)
T 3fvz_A 224 KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-- 301 (329)
T ss_dssp ETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT--
T ss_pred ECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC--
Confidence 9 669988776432 12221 1111111123333332 2457999999999988766422111111 11111
Q ss_pred ccccccccCCCcEEEEE-ccCCcEEEEEeec
Q 003331 741 QLKLESCLSIDRLVCIC-TSSGSIHILRVNL 770 (829)
Q Consensus 741 ~~~~~~~~~~~~~l~~~-~~~G~l~~~d~~~ 770 (829)
++.+|++ ..++.|++|+.+.
T Consensus 302 ----------dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 302 ----------DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ----------TSEEEEEESSSCCEEEEEEEE
T ss_pred ----------CCCEEEEECCCCEEEEEeCCc
Confidence 3456655 4577899998763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-06 Score=91.22 Aligned_cols=218 Identities=6% Similarity=-0.063 Sum_probs=122.9
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeee------------
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQ------------ 563 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~------------ 563 (829)
..|+.+|..+|+..............+.++++++.|+..+.++.|+.+|..+|+....+..+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 36899999988764322222222223667889999988888889999999999876554433221100
Q ss_pred -------eeeecCCCEEEEe-----ccCCeEEEEEcCCCeEEEeeccCCcccccceeec-CCCEEEEEecC------CeE
Q 003331 564 -------PVVDAPRQLIWCG-----SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE-VHDVLYVASTS------GRL 624 (829)
Q Consensus 564 -------~~~~~~~~~i~~g-----s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~-~~~~l~v~t~~------g~l 624 (829)
+.+.+++..+++. ..+..|+.+|..+|+....... ......+.+.+ +++.+++.+.+ ..|
T Consensus 140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD-TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC-CcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 1112222222222 2445799999999887655432 22234455555 44556555433 358
Q ss_pred EEEEccCCCceEEEeeccC-CcceeeeeeeecCCEEEEEeeC-----CeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003331 625 TAISVKALPFHTLWLHELE-VPAFASLCITSANRHVICCLVD-----GHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~~~~~~-----g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
+.++.++ ++........ ......+.+++++..+++.+.+ +.|+.+| .+|+......... .. +. ...
T Consensus 219 ~~~d~~~--~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~-~~--~s~ 291 (396)
T 3c5m_A 219 WLVNEDG--SNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CS-HL--MSN 291 (396)
T ss_dssp EEEETTS--CCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EE-EE--EEC
T ss_pred EEEECCC--CceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CC-CC--ccC
Confidence 8888775 4322211111 1123455677777777666543 3499999 7776543222222 11 21 222
Q ss_pred -CCeEEEE-e----------------eCCeEEEEeCCCCcEE
Q 003331 698 -PSQVLIC-S----------------RNGSIYSFEQESGNLL 721 (829)
Q Consensus 698 -~~~i~~~-t----------------~~g~l~~~d~~tG~~~ 721 (829)
++.+++. + .++.|+.||..+|+..
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 333 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ 333 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence 3444433 2 2467999999888764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.2e-06 Score=87.55 Aligned_cols=196 Identities=10% Similarity=0.006 Sum_probs=120.7
Q ss_pred cceEEeeCCCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC--EEEEEEcCCCcEEEE
Q 003331 477 SPLVVLKDSDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG--KIYFLDYLTGDIYWT 553 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg--~l~~~d~~tG~~~w~ 553 (829)
.|.-+.-+.++.||+... ++.|+.||+.++++.......... . +++..+++.+|++..++ .|+.+|..++.....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 344333345667888764 578999999988776433333222 2 67788888999998765 899999877765333
Q ss_pred E-e--c-CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee---ccCCccc---ccceeecCCCEEEEEec-CC
Q 003331 554 F-Q--T-CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL---PCGGSIF---GSPAIDEVHDVLYVAST-SG 622 (829)
Q Consensus 554 ~-~--~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~---~~~~~~~---~~~~~~~~~~~l~v~t~-~g 622 (829)
. . . .........+++.++.||+...++.|+.||..++...... ..+.... ..++++++++.+|++.. ++
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 3 0 1 1112233455555789999877888999999888654331 1111111 25667776788888764 57
Q ss_pred eEEEEEccCCCceEEEeeccC-C-------------cceeeeeeeecCCEEEEEe--eCCeEEEEc-CCCCEE
Q 003331 623 RLTAISVKALPFHTLWLHELE-V-------------PAFASLCITSANRHVICCL--VDGHVVALD-SSGSII 678 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~-~-------------~~~~s~~~~~~~~~l~~~~--~~g~i~~~d-~~g~~~ 678 (829)
.|+.++.+. +........ . ......++.+++ .+|++. .++.|..++ .+|.+.
T Consensus 290 ~I~~~~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 290 SVYKITPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEEecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCEEE
Confidence 899998763 322211111 0 011234454444 477775 467899999 888754
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-08 Score=113.08 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=64.4
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..|.+++|+.|+++|+++|+++.|+.+||||++|||||+||+|+.++ ++++..+|++||+++||..+....
T Consensus 5 ~~p~~~~e~~l~~iw~~vL~~~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~~~~~~~ 81 (520)
T 2jgp_A 5 VAPRSVWEARLAQVWEQVLNVPQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETA 81 (520)
T ss_dssp CCCCSHHHHHHHHHHHHHHTCSCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhc
Confidence 45778999999999999999999999999999999999999998754 478999999999999999998654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-06 Score=80.88 Aligned_cols=170 Identities=9% Similarity=0.044 Sum_probs=116.5
Q ss_pred EEEEEecCCeee-eeeeeecCCCEEEEeccC-C--eEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCe
Q 003331 550 IYWTFQTCGEVK-CQPVVDAPRQLIWCGSHD-H--NLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 550 ~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~~-g--~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~ 623 (829)
++.++....... ....+. ++.+|.++.+ | .|..+|++||+.+.+.......+.- .... ++.||+.++ ++.
T Consensus 33 vv~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEecCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCE
Confidence 444554443332 223344 4688887643 3 7999999999999988776554432 3333 489999986 678
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecC--CceeecCcccccCCCe
Q 003331 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTG--GPIFAGPCTSFALPSQ 700 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~--~~~~~~~~~~~~~~~~ 700 (829)
+++||+++ ++.+-++.... ....++.+++.+|+...++.|..+| .+.+++-+.... +..+..+.-..-.++.
T Consensus 109 v~v~D~~t--~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~ 183 (262)
T 3nol_A 109 GFVWNIRN--LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGE 183 (262)
T ss_dssp EEEEETTT--CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTE
T ss_pred EEEEECcc--CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCE
Confidence 99999998 88887776643 2234556788999988778899999 888888776653 1111111001112679
Q ss_pred EEEEee-CCeEEEEeCCCCcEEEEEecCC
Q 003331 701 VLICSR-NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 701 i~~~t~-~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
||+... ++.|..+|++||+++-.++...
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~ 212 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNG 212 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence 999874 7789999999999987777653
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.7e-07 Score=95.94 Aligned_cols=184 Identities=10% Similarity=0.003 Sum_probs=110.2
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecC------
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTC------ 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~------ 557 (829)
++..|..|+.|+.|..||..++........+.....+..+.+++. .+++++.|+.|..||..+++........
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 356788899999999999988876655544444445677877654 6889999999999999998765432210
Q ss_pred --------------------CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC------------------
Q 003331 558 --------------------GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------ 599 (829)
Q Consensus 558 --------------------~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------ 599 (829)
..+........++..|+.++.|+.+..||..+++....+...
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 011111112246678999999999999999887654332211
Q ss_pred -CcccccceeecCCCE-EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEE
Q 003331 600 -GSIFGSPAIDEVHDV-LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 671 (829)
Q Consensus 600 -~~~~~~~~~~~~~~~-l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~ 671 (829)
............++. +..++.+|.|+.||..+ ++.............+.++.+++..+.+++.+ ++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~--~~~~~~~~~~~~~V~svafspdG~~LA~as~~-Gv~lv 385 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYE--KDSNSIPIQLGMPIVDFCWHQDGSHLAIATEG-SVLLT 385 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTC--TTCCEEEEECSSCEEEEEECTTSSEEEEEESS-EEEEE
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCC--CcEEEEecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEE
Confidence 011111112222343 34466789999999887 65544433333344677888888888888754 45444
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.8e-06 Score=80.54 Aligned_cols=216 Identities=7% Similarity=-0.010 Sum_probs=134.7
Q ss_pred CcEEEEEecCCee-eeeeeeecCCCEEEEecc---CCeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCEEEEEec-C
Q 003331 548 GDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSH---DHNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDVLYVAST-S 621 (829)
Q Consensus 548 G~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~---~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~l~v~t~-~ 621 (829)
.+++.++..+... .....++++ +.+|+++. ++.|..+|.++|+.+.++..+...+. ...++ ++.+|+.++ +
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 3455556554432 223344433 78999864 47899999999999988876554333 23333 479999886 5
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecC-cccccC
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGP-CTSFAL 697 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~-~~~~~~ 697 (829)
+.+.++|.++ ++.+.++..+.+ ....+..+++.+|++..++.|..+| .+.+..-+...+.. ....+ .+...
T Consensus 86 ~~v~viD~~t--~~v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 86 NIGFIYDRRT--LSNIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp SEEEEEETTT--TEEEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CEEEEEECCC--CcEEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 7899999987 888887765511 1234566788999988888999999 88888777665421 11111 11112
Q ss_pred CCeEEEEee-CCeEEEEeCCCCcEEEEEecCCcccc--ccccccccccccccccCCCcEEEEEc-cCCcEEEEEeecC
Q 003331 698 PSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPITA--SAYIDEHLQLKLESCLSIDRLVCICT-SSGSIHILRVNLD 771 (829)
Q Consensus 698 ~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~~~ 771 (829)
++.+|+... ++.|..+|+++|+++-.++.+..... .........+.+-.....++.+|++. ..+.|+.++....
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 678998874 68999999999999877765321000 00000000011111122355666654 5778999988753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=83.81 Aligned_cols=148 Identities=10% Similarity=0.003 Sum_probs=108.3
Q ss_pred CeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
++.||+++. +|.|..+|++||+++.+. ++.... ...+..+++.||+.++ ++.++.||++|++++-++....+-. .
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F-geGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-G 140 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF-AEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-G 140 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC-EEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-C
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc-eeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-E
Confidence 578998875 467999999999999888 766532 2234456678999875 6789999999999999988754422 1
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--ccc---ccceeecCCCEEEEEec-CCeEEEEEccCCCceEE
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIF---GSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTL 637 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~---~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~ 637 (829)
+ ..+++.+|++..++.|+.+|++|.+.+-++.... ... .-..+. ++.||+..+ +..|.++|+++ |+.+
T Consensus 141 -L-t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~T--G~V~ 214 (268)
T 3nok_A 141 -L-CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPAT--GTVV 214 (268)
T ss_dssp -E-EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTT--CBEE
T ss_pred -E-ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCC--CcEE
Confidence 1 2245789998878899999999999888776532 111 111223 478999885 66899999988 8877
Q ss_pred Eeecc
Q 003331 638 WLHEL 642 (829)
Q Consensus 638 w~~~~ 642 (829)
-.++.
T Consensus 215 ~~Idl 219 (268)
T 3nok_A 215 GVIDA 219 (268)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-06 Score=83.97 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=121.5
Q ss_pred EeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-CeEEEeeccC-CcccccceeecCC
Q 003331 535 CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLPCG-GSIFGSPAIDEVH 612 (829)
Q Consensus 535 ~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~~~-~~~~~~~~~~~~~ 612 (829)
..++.|+.||..+++.......... ...+.+.+++..+++++ ++.|+.||..+ ++........ ......+.+.+++
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQTPEL-FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEEESSC-CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CcceeEEEEeCCCCceeeeccCCcc-eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 3577899999999988765554433 34556777777777775 78999999999 8766544333 2345567777777
Q ss_pred CEEEEEec----CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEE-EEeeCCeEEEE--c-CCCCEEEEeecC
Q 003331 613 DVLYVAST----SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVI-CCLVDGHVVAL--D-SSGSIIWRCRTG 684 (829)
Q Consensus 613 ~~l~v~t~----~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~-~~~~~g~i~~~--d-~~g~~~w~~~~~ 684 (829)
..++++.. ...|+.++..+ +... ....... ...+.+.+++..++ .+..++.+.++ + .+++........
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~--~~~~-~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTG--GTPR-LMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTC--CCCE-ECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CEEEEEEeCCCCcceEEEEECCC--CceE-EeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 88888773 35677777765 4322 2222222 34456777777776 56667755444 4 444443222222
Q ss_pred CceeecCcccccCCC-eEEEEee-CCe--EEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 685 GPIFAGPCTSFALPS-QVLICSR-NGS--IYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~-~i~~~t~-~g~--l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
..+.. .. ...++ .+++++. ++. |+.++..+++.. .+.........+. ...++..+++++.+
T Consensus 173 ~~~~~-~~--~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~-----------~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 173 GRNDG-PD--YSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE-RITDSAYGDWFPH-----------PSPSGDKVVFVSYD 237 (297)
T ss_dssp SCEEE-EE--ECTTSSEEEEEECTTSSCEEEEEETTSSCEE-ECCCCSEEEEEEE-----------ECTTSSEEEEEEEE
T ss_pred Ccccc-ce--ECCCCCEEEEEecCCCCccEEEECCCCCCcE-EEecCCcccCCeE-----------ECCCCCEEEEEEcC
Confidence 22221 11 12233 4665543 554 444554444432 2221111111111 12336677776654
Q ss_pred -----------CcEEEEEeecC
Q 003331 761 -----------GSIHILRVNLD 771 (829)
Q Consensus 761 -----------G~l~~~d~~~~ 771 (829)
+.|++||.+++
T Consensus 238 ~~~~~~~~~~~~~l~~~d~~~~ 259 (297)
T 2ojh_A 238 ADVFDHPRDLDVRVQLMDMDGG 259 (297)
T ss_dssp TTCCSCCSSEEEEEEEEETTSC
T ss_pred CCCCcccccCceEEEEEecCCC
Confidence 45999998755
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-06 Score=86.25 Aligned_cols=234 Identities=11% Similarity=0.118 Sum_probs=139.0
Q ss_pred eeCCCeEEEEecCCCcEEEEECC-CCcEEEEEE--cCCceeeceEEeeCCcE--EEEEE-------------eCCEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAK-RSSVLWEIK--LEGRIECSAAVLADFSQ--VVVGC-------------YKGKIYFL 543 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~-tg~~~w~~~--~~~~~~~~~~~~~~~~~--v~vg~-------------~dg~l~~~ 543 (829)
++.++..||+++.+ .+..||.. +|++..... ..+. .....++++++. ++++. .++.+..|
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~ 124 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF 124 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence 34456678988877 79999987 888754322 2222 234567778774 44442 47888888
Q ss_pred EcC-CCcEEEEEec----CCeeeeeeeeecCCCEEEEecc-CCeEEEEEcC-CCeEEE--eecc--CCcccccceeecCC
Q 003331 544 DYL-TGDIYWTFQT----CGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR-NYRCVY--KLPC--GGSIFGSPAIDEVH 612 (829)
Q Consensus 544 d~~-tG~~~w~~~~----~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~-tg~~~w--~~~~--~~~~~~~~~~~~~~ 612 (829)
+.. +|++.-.... .........+++++..+|+++. ++.|+.||.. +|+... .... ++.......+++++
T Consensus 125 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 125 SVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp EECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 876 5776543331 2233445567777778887653 5789999998 787643 2221 12223445677777
Q ss_pred CEEEEEec-CCeEEEEEccCCCceEEE---eec-cCC-----c-------ceeeee-eeecCCEEEEEeeCC------eE
Q 003331 613 DVLYVAST-SGRLTAISVKALPFHTLW---LHE-LEV-----P-------AFASLC-ITSANRHVICCLVDG------HV 668 (829)
Q Consensus 613 ~~l~v~t~-~g~l~~~~~~~~~g~~~w---~~~-~~~-----~-------~~~s~~-~~~~~~~l~~~~~~g------~i 668 (829)
..+|++.. ++.+.+|+.+..+|+... ... ... . ...... ++++++.+|+++.+. .|
T Consensus 205 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i 284 (365)
T 1jof_A 205 NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYI 284 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEE
T ss_pred CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeE
Confidence 88998875 678888876543365432 121 111 1 234566 778888898877533 78
Q ss_pred EEEc-C-CCCEEEE---eecC-CceeecCccccc--CCCeEEEEeeC-CeEEEEeCCCC
Q 003331 669 VALD-S-SGSIIWR---CRTG-GPIFAGPCTSFA--LPSQVLICSRN-GSIYSFEQESG 718 (829)
Q Consensus 669 ~~~d-~-~g~~~w~---~~~~-~~~~~~~~~~~~--~~~~i~~~t~~-g~l~~~d~~tG 718 (829)
.+|+ . +|++... .... ...... .+... .++.|++++.+ +.|..|+.+..
T Consensus 285 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 285 AGFKLRDCGSIEKQLFLSPTPTSGGHSN-AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECTTSCEEEEEEEEECSSCCTTCC-CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEEEECCCCCEEEeeeeeecCCCCcccc-eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8888 4 6775431 2111 111110 01110 25578888764 78888876655
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-06 Score=86.96 Aligned_cols=189 Identities=15% Similarity=0.121 Sum_probs=100.5
Q ss_pred ceEEeeCCcEEEE-E-EeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 521 SAAVLADFSQVVV-G-CYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 521 ~~~~~~~~~~v~v-g-~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
..++..++ .+|+ + +.++.|+.||..++... .+.... .......++. ++.+|+++.++.|+.||..++.. +.+.
T Consensus 28 ~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~i~~~d~~~~~~-~~~~ 103 (270)
T 1rwi_B 28 GVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQ-TVLP 103 (270)
T ss_dssp EEEECTTC-CEEEEECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCC-EECC
T ss_pred ceEECCCC-CEEEEccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECC-CCCEEEEcCCCEEEEEeCCCceE-eeee
Confidence 34454554 5787 6 45788999997665433 222221 1122233443 45688887688999999776543 3332
Q ss_pred cCC-cccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-C
Q 003331 598 CGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-S 673 (829)
Q Consensus 598 ~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~ 673 (829)
..+ .....+.++. ++.+|++. .++.|+.++..+ ..................+.. ++.+|++.. ++.|+.+| .
T Consensus 104 ~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 104 FDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTC--CSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTT
T ss_pred cCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCC--ceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEecC
Confidence 222 2223344554 45688875 467899997544 332221111111122334443 445888764 57899999 4
Q ss_pred CCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCc
Q 003331 674 SGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGN 719 (829)
Q Consensus 674 ~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~ 719 (829)
++... ...... ......+..+.++.+|+++. ++.|+.|+..+..
T Consensus 180 ~~~~~-~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 180 SNNQV-VLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp TCCEE-ECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCceE-eecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 44432 222111 11111233455679999875 5689999986544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-05 Score=77.28 Aligned_cols=169 Identities=9% Similarity=-0.000 Sum_probs=116.9
Q ss_pred EEEEEecCCeee-eeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCe
Q 003331 550 IYWTFQTCGEVK-CQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 550 ~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~ 623 (829)
++.++....... ....+++ +.+|.++.. ..|..+|+++|+.+-+.......+.- .... ++.||+.++ ++.
T Consensus 11 v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 444554433322 2333443 789988654 37999999999999988776655432 3333 489999885 678
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecCcccccCCCe
Q 003331 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSFALPSQ 700 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~~~~~~~~~~ 700 (829)
+++||.++ ++.+-++..... ...++.+++.+|++..++.|+.+| .+.+++-+.+.... .+....-..-.++.
T Consensus 87 v~v~D~~t--l~~~~ti~~~~~---Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~ 161 (243)
T 3mbr_X 87 GFVYDLAT--LTPRARFRYPGE---GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGE 161 (243)
T ss_dssp EEEEETTT--TEEEEEEECSSC---CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTE
T ss_pred EEEEECCc--CcEEEEEeCCCC---ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCE
Confidence 99999988 888887766532 234556788999998889999999 88888876665321 11111001123788
Q ss_pred EEEEe-eCCeEEEEeCCCCcEEEEEecC
Q 003331 701 VLICS-RNGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 701 i~~~t-~~g~l~~~d~~tG~~~w~~~~~ 727 (829)
||+.. .+..|..+|+++|+++-.++..
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECG
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECC
Confidence 99887 4778999999999998777754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-05 Score=84.13 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=120.5
Q ss_pred ceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC--eEEEEEcCCCeEEEee-
Q 003331 521 SAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH--NLYALDFRNYRCVYKL- 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~- 596 (829)
..++..+ +.||+... ++.|+.||..+|++....... .... +.++.+++.+|++..++ .|+.+|..++......
T Consensus 135 ~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g 211 (409)
T 3hrp_A 135 GIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIG 211 (409)
T ss_dssp EEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEE
T ss_pred EEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEee
Confidence 3445555 45777654 578999998888776444332 2223 66777778899888765 7999998876543222
Q ss_pred --cc-CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee---ccCCcce---eeeeeeecCCEEEEEee-CC
Q 003331 597 --PC-GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH---ELEVPAF---ASLCITSANRHVICCLV-DG 666 (829)
Q Consensus 597 --~~-~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~---~~~~~~~---~s~~~~~~~~~l~~~~~-~g 666 (829)
.. .........++++++.||+...++.|+.||.++ +...... ....... ...++.++++.+|++.. ++
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~--~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKT--QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTT--CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCC--CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 11 122234456666678999987788899999886 4332220 1111111 15566666788888764 57
Q ss_pred eEEEEcCCCCEEEEeecC---C--------ceeecC-cccccCCCeEEEEe--eCCeEEEEeCCCCcEEE
Q 003331 667 HVVALDSSGSIIWRCRTG---G--------PIFAGP-CTSFALPSQVLICS--RNGSIYSFEQESGNLLW 722 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~---~--------~~~~~~-~~~~~~~~~i~~~t--~~g~l~~~d~~tG~~~w 722 (829)
.|+.++.+|+........ + ..+..| .+..+.++.+|++. .++.|+.|+..+|++.-
T Consensus 290 ~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~ 359 (409)
T 3hrp_A 290 SVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359 (409)
T ss_dssp EEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence 899999666543222211 0 001122 13345567799885 46789999987887643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=83.91 Aligned_cols=195 Identities=8% Similarity=0.038 Sum_probs=113.6
Q ss_pred ceEEeeCCc-EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 521 SAAVLADFS-QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~-~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
.+.+..+++ .+|++..++.|+.||..+|+.. .+.....+ ....+.+ ++.+|+++. ..|+.+|.++|+........
T Consensus 53 gp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-~~i~~~~-dg~l~v~~~-~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKIS-DSKQLIASD-DGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEE-TTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred CCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-eEEEEeC-CCeEEEEEC-CCEEEEECCCCcEEEEeeCC
Confidence 345555434 4455556789999998888754 23333333 2333443 467888874 46999999998865433221
Q ss_pred C----cccccceeecCCCEEEEEec-------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCe
Q 003331 600 G----SIFGSPAIDEVHDVLYVAST-------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGH 667 (829)
Q Consensus 600 ~----~~~~~~~~~~~~~~l~v~t~-------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~ 667 (829)
. .......+++ ++.+|+++. .+.|+.++ + |+...... ........++.++++.+|+.. .++.
T Consensus 129 ~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~--g~~~~~~~-~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--K--GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--T--TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred CCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--C--CcEEEeeC-CCcccCCeEEcCCCCEEEEEECCCCE
Confidence 1 1233445555 456888874 36788888 3 55432211 111123455666777787764 4578
Q ss_pred EEEEc-C--CC-CE----EEE-eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCC
Q 003331 668 VVALD-S--SG-SI----IWR-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 668 i~~~d-~--~g-~~----~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
|++++ . +| ++ .+. +...... ...+..+.++.+|+++. ++.|++||+ +|+.+..+..+.
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~--p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGG--MDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSE--EEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCC--CCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC
Confidence 99998 5 66 32 121 1111111 11233556789999985 478999998 677766665543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.1e-09 Score=135.03 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhcCCCccc
Q 003331 290 LLQVIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKKGLCNLD 360 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~~~~~~~ 360 (829)
.++.+.+.|+++|+++ .|+++++||++|||||+|++|.+.|+ +++..|+. +|+..|+..+..........
T Consensus 2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~~~~~~~~~~~~ 2202 (2512)
T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQELSSKTSTDADPA 2202 (2512)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHHHhhcccccccc
Confidence 4567899999999974 58999999999999999999998763 77788887 89999988775432211000
Q ss_pred cc---------------cc---------cccc---cCcccccccccccCccccchhhhhhcccccCCccccCCcccccCC
Q 003331 361 VS---------------AD---------ANWK---LNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKD 413 (829)
Q Consensus 361 ~~---------------~~---------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~ 413 (829)
.. .. .... ......++||+|+..|....|..+++.|. .++|++|.++....
T Consensus 2203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~Lfc~~~agG~~~~y~~l~~~l~--~~v~~lq~pg~~~~ 2280 (2512)
T 2vz8_A 2203 TPTSHEDSPVRQQATLNLSTLLVNPEGPTLTRLNSVQSAERPLFLVHPIEGSITVFHGLAAKLS--IPTYGLQCTGAAPL 2280 (2512)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccCceeeecccccCCCCCeEEeCCccccHHHHHHHHHhhC--CcEEEEecCCCCCC
Confidence 00 00 0000 11123579999999999999999999996 89999987542000
Q ss_pred --------------CCCccCCCCCC-eeeecccccee--ecccccc
Q 003331 414 --------------GLPWNLSSVPM-SCSFSRCNKVM--HEEKIRG 442 (829)
Q Consensus 414 --------------~~~~~~~~~~~-~~s~~~~~~~~--~~~~~~~ 442 (829)
..-.+..||.| |||+|+.+|++ .+++.++
T Consensus 2281 ~~i~~la~~~~~~i~~~~p~gpy~L~G~S~Gg~lA~evA~~L~~~G 2326 (2512)
T 2vz8_A 2281 DSIQSLASYYIECIRQVQPEGPYRIAGYSYGACVAFEMCSQLQAQQ 2326 (2512)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEEECHhHHHHHHHHHHHHHcC
Confidence 00112338999 99999999988 4444443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.2e-06 Score=89.61 Aligned_cols=237 Identities=11% Similarity=-0.019 Sum_probs=149.1
Q ss_pred ceEEeeCCCeEEEEec----------CCCcEEEEECCCCcEEEEEEcCC-------ceeeceEEeeCCcEEEEEEe--CC
Q 003331 478 PLVVLKDSDIYLFVGS----------HSHKFICADAKRSSVLWEIKLEG-------RIECSAAVLADFSQVVVGCY--KG 538 (829)
Q Consensus 478 p~v~~~d~~~~l~igs----------~~g~l~~~d~~tg~~~w~~~~~~-------~~~~~~~~~~~~~~v~vg~~--dg 538 (829)
|-+.++.++..+|++. .++.|..||+.|+++..+..+++ ..-....+++|++.+|+... ++
T Consensus 68 P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~ 147 (368)
T 1mda_H 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCC
Confidence 3455566788999986 35789999999999998887651 11125678899999999986 35
Q ss_pred EEEE--EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCC-----CeEEEeec----cCCcccccce
Q 003331 539 KIYF--LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRN-----YRCVYKLP----CGGSIFGSPA 607 (829)
Q Consensus 539 ~l~~--~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~t-----g~~~w~~~----~~~~~~~~~~ 607 (829)
.+.. +|+.+ +.++..++... +..+.....+..+.++.+..+|.++ |+..+... .+.. |.
T Consensus 148 ~v~V~~iD~~t---v~~i~v~~~~~---~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~----P~ 217 (368)
T 1mda_H 148 AAGLSVPGASD---DQLTKSASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ----AA 217 (368)
T ss_dssp EEEEEETTTEE---EEEEECSSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC----CE
T ss_pred eEEEEEEchhh---ceEEECCCceE---EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCC----cc
Confidence 6777 89877 44454433211 1222223334456778888899887 66655321 1111 11
Q ss_pred eecCCCEEEEEecCCeEEEEEccCCCceEE--EeeccC-----C--cc-eeeeeeeecCCEEEEEee-C--------CeE
Q 003331 608 IDEVHDVLYVASTSGRLTAISVKALPFHTL--WLHELE-----V--PA-FASLCITSANRHVICCLV-D--------GHV 668 (829)
Q Consensus 608 ~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~--w~~~~~-----~--~~-~~s~~~~~~~~~l~~~~~-~--------g~i 668 (829)
...+++.+|+.+. +.++.+|..+..-+.+ |..... . +. .....+.++++++|++.. . +.+
T Consensus 218 ~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 218 QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 2444577777777 8899999864211222 322110 0 00 011356778899999765 3 467
Q ss_pred EEEc-CCCCEEEEeecCCceeecCcccccCCC-eEEEEee--CCeEEEEeCCCCcEEEEEecCC
Q 003331 669 VALD-SSGSIIWRCRTGGPIFAGPCTSFALPS-QVLICSR--NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~--~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
.++| .+++.+-++..+...... ....++ .+|+.+. ++.|..+|..+++++-++..+.
T Consensus 297 ~ViD~~t~~vv~~i~vg~~p~gi---~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGHDSDAI---IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEESSSCCEEECCEEEEEECEE---EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred EEEECCCCeEEEEEECCCCcceE---EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 7999 899888777655432221 222344 4777765 7999999999999987766544
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=8.5e-06 Score=84.57 Aligned_cols=230 Identities=14% Similarity=0.136 Sum_probs=130.4
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE-EEEecC--------C----------eeeeeeeeecCCCEEEEeccCCe
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIY-WTFQTC--------G----------EVKCQPVVDAPRQLIWCGSHDHN 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~-w~~~~~--------~----------~~~~~~~~~~~~~~i~~gs~~g~ 581 (829)
.+++..++..+|++..++.|+.||..+++.. |..... + .......++..++.||+++..+.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~ 102 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYH 102 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCC
Confidence 3455556556999988999999998776553 322110 0 01122334434688999977778
Q ss_pred EEEEEcCCCeEEEeec-cCCc---ccccceeecCCCEEEEEecC------------------CeEEEEEccCCCceEEEe
Q 003331 582 LYALDFRNYRCVYKLP-CGGS---IFGSPAIDEVHDVLYVASTS------------------GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~-~~~~---~~~~~~~~~~~~~l~v~t~~------------------g~l~~~~~~~~~g~~~w~ 639 (829)
++.+|..+|+...... ..+. ......++..++.+|++... |.|+.+|.++ ++....
T Consensus 103 i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~~~~~ 180 (322)
T 2fp8_A 103 LSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST--KETTLL 180 (322)
T ss_dssp EEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT--TEEEEE
T ss_pred EEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC--CEEEEe
Confidence 9999988765332211 1111 11223444325689987643 6799999876 543221
Q ss_pred e-ccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CC---CCEEEEeecCCceeecCcccccCCCeEEEEeeC------
Q 003331 640 H-ELEVPAFASLCITSANRHVICCL-VDGHVVALD-SS---GSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN------ 707 (829)
Q Consensus 640 ~-~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~---g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~------ 707 (829)
. ....+ ...++.++++.+|++. .++.|++++ .. +.........+ . .-+..+.+|.+|+++..
T Consensus 181 ~~~~~~p--~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P---~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 181 LKELHVP--GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-P---GNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEESCC--CEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-E---EEEEECTTSCEEEEEEEETTSST
T ss_pred ccCCccC--cceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-C---CCeEECCCCCEEEEecCcccccc
Confidence 1 11111 2345666667788885 457899998 43 22211111212 1 11335567889999754
Q ss_pred -----CeEEEEeCCCCcEEEEEecCCcc-ccccccccccccccccccCCCcEEEEEcc-CCcEEEEEee
Q 003331 708 -----GSIYSFEQESGNLLWEYSVGDPI-TASAYIDEHLQLKLESCLSIDRLVCICTS-SGSIHILRVN 769 (829)
Q Consensus 708 -----g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~G~l~~~d~~ 769 (829)
+.|+++|+ +|+++-.+..+... ...+. .+...++.+|+++. ++.|.+++..
T Consensus 255 ~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~----------~~~~~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 255 HGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFE----------QIQEHDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCC----------EEEEETTEEEEECSSCSEEEEEEC-
T ss_pred cCCCccEEEEECC-CCCEEEEEECCCCCccccce----------EEEEeCCEEEEeecCCCceEEEecc
Confidence 67999997 48877666554321 01010 00112678888864 5678888765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.7e-05 Score=88.57 Aligned_cols=260 Identities=8% Similarity=-0.023 Sum_probs=144.6
Q ss_pred cEEEEECCCCcEEEEEEc------CCceeeceEEeeCCcEEEEEEeCC-----EEEEEEcCCCcEEEEEecCCeeeeeee
Q 003331 497 KFICADAKRSSVLWEIKL------EGRIECSAAVLADFSQVVVGCYKG-----KIYFLDYLTGDIYWTFQTCGEVKCQPV 565 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~------~~~~~~~~~~~~~~~~v~vg~~dg-----~l~~~d~~tG~~~w~~~~~~~~~~~~~ 565 (829)
.++..+..+|+..-.++. +......+.+++|+..|+.+..++ .|+.+|+.+|+.+-..... .-...+.
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 567776655553211211 112345678899998887766543 7999999999876432111 1124466
Q ss_pred eecCCCEEEEeccCCe----------------EEEEEcCCCe----EEEeeccCCcccccceeecCCCEEEEEec-----
Q 003331 566 VDAPRQLIWCGSHDHN----------------LYALDFRNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVAST----- 620 (829)
Q Consensus 566 ~~~~~~~i~~gs~~g~----------------l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~----- 620 (829)
+.+++..|++++.++. |+.++..+++ +++...........+.+++++..|++.+.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 7777788888776655 9999998875 33332212222345667777788877664
Q ss_pred CCeEEEEEccC------CCceEEEeeccCCcceeeeeeeecCCEEEEEeeC----CeEEEEc-CCCCE-EEEeecCC-c-
Q 003331 621 SGRLTAISVKA------LPFHTLWLHELEVPAFASLCITSANRHVICCLVD----GHVVALD-SSGSI-IWRCRTGG-P- 686 (829)
Q Consensus 621 ~g~l~~~~~~~------~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~----g~i~~~d-~~g~~-~w~~~~~~-~- 686 (829)
+..++.+|+++ ...... .+...... ....+..+++.+++.+.. +.|+.+| .++.. .|+.-... .
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~-~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 335 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWV-KLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK 335 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCE-EEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS
T ss_pred ccEEEEEECcccccccCCccceE-EeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC
Confidence 56799999874 111111 11111111 122356678888887653 3599999 66542 23322111 1
Q ss_pred -eeecCcccccCCCeEE-EEeeCC--eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc----
Q 003331 687 -IFAGPCTSFALPSQVL-ICSRNG--SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT---- 758 (829)
Q Consensus 687 -~~~~~~~~~~~~~~i~-~~t~~g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 758 (829)
...... ...++.++ ....++ .|+.++..+|+.+..+..+......... ..++..+++..
T Consensus 336 ~~~~~~~--~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~-----------s~d~~~l~~~~ss~~ 402 (710)
T 2xdw_A 336 DVLEWVA--CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSG-----------QKKDTEIFYQFTSFL 402 (710)
T ss_dssp CEEEEEE--EETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEEC-----------CTTCSEEEEEEECSS
T ss_pred CeEEEEE--EEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEec-----------CCCCCEEEEEEeCCC
Confidence 222111 12244544 445565 5888898788866555544221111111 11244555442
Q ss_pred cCCcEEEEEeecCc
Q 003331 759 SSGSIHILRVNLDV 772 (829)
Q Consensus 759 ~~G~l~~~d~~~~~ 772 (829)
..+.|+.||..++.
T Consensus 403 ~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 403 SPGIIYHCDLTKEE 416 (710)
T ss_dssp CCCEEEEEETTSSS
T ss_pred CCCEEEEEECCCCc
Confidence 34689999987653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.9e-06 Score=99.26 Aligned_cols=197 Identities=6% Similarity=-0.069 Sum_probs=122.7
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe---eeeeeeeecCCCEEEEeccC---------CeEEEEEcC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE---VKCQPVVDAPRQLIWCGSHD---------HNLYALDFR 588 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~i~~gs~~---------g~l~~~d~~ 588 (829)
++.+++++..++. +.|+.|+.||..+|+....+..+.. ....+.+++++..|++++.+ +.++.||..
T Consensus 21 ~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 99 (723)
T 1xfd_A 21 EAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (723)
T ss_dssp CCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred ccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC
Confidence 5567777776655 6788999999999988766654432 13456777788888877653 778999999
Q ss_pred CCeEEEeeccCC---cccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCc-c-----------------e
Q 003331 589 NYRCVYKLPCGG---SIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP-A-----------------F 647 (829)
Q Consensus 589 tg~~~w~~~~~~---~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~-~-----------------~ 647 (829)
+|+.. .+.... .....+.+++++..|++++. +.|+.+|..+ |+.......... . .
T Consensus 100 ~~~~~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~--g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 100 HGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp SCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred CCceE-eccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCC--CceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 98762 222211 12456778887777777765 7899999887 554332222111 1 1
Q ss_pred eeeeeeecCCEEEEEeeCC----------------------------------eEEEEc-CCCCEEEEeecC------Cc
Q 003331 648 ASLCITSANRHVICCLVDG----------------------------------HVVALD-SSGSIIWRCRTG------GP 686 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g----------------------------------~i~~~d-~~g~~~w~~~~~------~~ 686 (829)
.++.+++++..+++++.++ .|+.+| .+++....+... ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 3567788888888876543 677788 666543333321 11
Q ss_pred eeecCcccccCCCeEE-EEee----CCeEEEEeCCCCcEEEEE
Q 003331 687 IFAGPCTSFALPSQVL-ICSR----NGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 687 ~~~~~~~~~~~~~~i~-~~t~----~g~l~~~d~~tG~~~w~~ 724 (829)
.... +....++.++ +.+. +..|+.||..+|+.....
T Consensus 256 ~~~~--~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 256 YITM--VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEE--EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred eeEE--EEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 1111 1123355544 3332 247999999999876543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-06 Score=80.19 Aligned_cols=169 Identities=10% Similarity=0.006 Sum_probs=114.6
Q ss_pred cEEEEEecCCeee-eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCccccc-ceeecCCCEEEEEec-CCeE
Q 003331 549 DIYWTFQTCGEVK-CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGS-PAIDEVHDVLYVAST-SGRL 624 (829)
Q Consensus 549 ~~~w~~~~~~~~~-~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~-~~~~~~~~~l~v~t~-~g~l 624 (829)
+++-++....... ....++ ++.+|.++. +|.|..+|+++|+.+.+. .....+.- .... ++.||+.++ ++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence 4445555443322 222333 478888654 467999999999998887 66544432 2333 578999885 5778
Q ss_pred EEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCc--eeecCcccccCCCeE
Q 003331 625 TAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGP--IFAGPCTSFALPSQV 701 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~--~~~~~~~~~~~~~~i 701 (829)
++||+++ ++.+-++..... ...++.+++.+|+...++.|+.+| .+.+++-+...... .+....-..-.+|.|
T Consensus 119 ~V~D~~T--l~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~l 193 (268)
T 3nok_A 119 FTWSGMP--PQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVI 193 (268)
T ss_dssp EEEETTT--TEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEE
T ss_pred EEEECCc--CcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEE
Confidence 9999998 888887766432 234556788999998889999999 88888876665321 111100011126799
Q ss_pred EEEee-CCeEEEEeCCCCcEEEEEecC
Q 003331 702 LICSR-NGSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 702 ~~~t~-~g~l~~~d~~tG~~~w~~~~~ 727 (829)
|+... ++.|..+|+++|+++-.++..
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 99874 678999999999998777654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-06 Score=90.88 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=114.5
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-----eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE------
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI------ 550 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-----~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~------ 550 (829)
.+.++..|.+++.+|.+..||.++ .+-.+. +.. ...+.++++++..+++|+.||.|..||..++++
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 445788899999999999999543 222234 443 245788999999999999999999999999863
Q ss_pred -EEEEecCC----eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE---Eeec-cCCcccccceeecCCCEEEEEecC
Q 003331 551 -YWTFQTCG----EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLP-CGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 551 -~w~~~~~~----~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~---w~~~-~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
+.++..+. .......+.+++ +.+++.|+.++.||..+++.. .++. .+.....+..+. ++.+.+++ +
T Consensus 170 ~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~ 244 (588)
T 2j04_A 170 FESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P 244 (588)
T ss_dssp EEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S
T ss_pred eeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C
Confidence 44543222 234444666544 778888999999999887732 2221 233344455555 37777776 6
Q ss_pred CeEEEEEccCCCceE-EEeeccCCcceeeeee--eecCCEEEEEeeCCe
Q 003331 622 GRLTAISVKALPFHT-LWLHELEVPAFASLCI--TSANRHVICCLVDGH 667 (829)
Q Consensus 622 g~l~~~~~~~~~g~~-~w~~~~~~~~~~s~~~--~~~~~~l~~~~~~g~ 667 (829)
+.|..||..+ ++. ..... +...+.+..+ .+++..+.++..+|.
T Consensus 245 ~tIkLWd~~~--~~~~~~~~g-h~~~V~~va~~~s~d~~~La~a~edG~ 290 (588)
T 2j04_A 245 GYVHKIDLKN--YSISSLKTG-SLENFHIIPLNHEKESTILLMSNKTSY 290 (588)
T ss_dssp SEEEEEETTT--TEEEEEECS-CCSCCCEEEETTCSSCEEEEECSSCEE
T ss_pred CeEEEEECCC--CeEEEEEcC-CCceEEEEEeeeCCCCCEEEEEcCCCC
Confidence 8999999987 665 33333 3333344555 444444555544444
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00014 Score=73.00 Aligned_cols=232 Identities=9% Similarity=-0.043 Sum_probs=129.4
Q ss_pred EEEEecCCCcEEEEECCCCcEEE-----EEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLW-----EIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVK 561 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w-----~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~ 561 (829)
.|+++.. +.|+.+|..++.... ....+......+.+..+++.||+... ++.|+.+|..++.........-...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4555553 468889886543210 01111111224556656678888765 5789999976655433222221222
Q ss_pred eeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC---CeEEEEEccCCCceEE
Q 003331 562 CQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTL 637 (829)
Q Consensus 562 ~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~ 637 (829)
...+++..++.+|+... .+.|..++............+........++.+++.+|++... +.|+.++++....+.+
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~ 161 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence 33455555678887654 5689999876432221121121222345677667899988753 6788888774211222
Q ss_pred EeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEE-eecCCceeecCcccccCCCeEEEEee-CCeEEEEe
Q 003331 638 WLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWR-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFE 714 (829)
Q Consensus 638 w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d 714 (829)
... ........++..+++.+|++.. .+.|.++|.+|..... ......... +..+ ++.+|++.. ++.|+.+|
T Consensus 162 ~~~--~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~g---i~~d-~~~lyva~~~~~~v~~~d 235 (267)
T 1npe_A 162 AQD--NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFA---VTSY-GKNLYYTDWKTNSVIAMD 235 (267)
T ss_dssp ECT--TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEE---EEEE-TTEEEEEETTTTEEEEEE
T ss_pred EEC--CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceE---EEEe-CCEEEEEECCCCeEEEEe
Confidence 111 1112244556666788888765 4689999943432222 221111111 1223 678888764 57899999
Q ss_pred CCCCcEEEEEec
Q 003331 715 QESGNLLWEYSV 726 (829)
Q Consensus 715 ~~tG~~~w~~~~ 726 (829)
.++|+.+-....
T Consensus 236 ~~~g~~~~~i~~ 247 (267)
T 1npe_A 236 LAISKEMDTFHP 247 (267)
T ss_dssp TTTTEEEEEECC
T ss_pred CCCCCceEEEcc
Confidence 999998766553
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.1e-09 Score=108.88 Aligned_cols=125 Identities=7% Similarity=-0.042 Sum_probs=88.3
Q ss_pred ccccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHcCCcchhhhcCCCHHHHHHHHHhhcCCCccccc
Q 003331 283 DETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNLGIDMRLIYNFPTPSKLEIALLEKKGLCNLDVS 362 (829)
Q Consensus 283 ~~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~ 362 (829)
...|.+++|+.|+++|+++|+++. +||||+| ++++++|+-. |++||+.+||..+
T Consensus 22 ~~~P~~~~E~~la~iw~~vL~~~~---~d~Ff~l-------~~l~~~~~~~----f~~pt~~~la~~~------------ 75 (319)
T 2hfk_A 22 SGADTGAGAGMFRALFRQAVEDDR---YGEFLDV-------LAEASAFRPQ----FASPEACSERLDP------------ 75 (319)
T ss_dssp --------CCHHHHHHHHHHHTTC---HHHHHHH-------HHHHHTTSCE----ECSGGGCCSCCCC------------
T ss_pred CCCCCCchHHHHHHHHHHHHcCCc---hHHHHHH-------HHHHHHHHHh----cCCcchhhccccc------------
Confidence 346778899999999999999876 9999999 8888887532 8999998776211
Q ss_pred cccccccCcccc-----ccccccc--CccccchhhhhhcccccCCccccCCcccccCCC----CCcc-------------
Q 003331 363 ADANWKLNLEED-----KEHQFHS--GYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG----LPWN------------- 418 (829)
Q Consensus 363 ~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~----~~~~------------- 418 (829)
........++ +++|+|+ ..+....|..+++.|..+.++|+++.+++..+. .+.+
T Consensus 76 --~~l~~~g~~~~~~~~~l~~~hg~g~~~~~~~~~~l~~~L~~~~~v~~~d~~G~g~~~~~~~~~~~~~~~~~a~~~~~~ 153 (319)
T 2hfk_A 76 --VLLAGGPTDRAEGRAVLVGCTGTAANGGPHEFLRLSTSFQEERDFLAVPLPGYGTGTGTGTALLPADLDTALDAQARA 153 (319)
T ss_dssp --EEEECCCCC-CCSCCEEEEECCCCTTCSTTTTHHHHHTTTTTCCEEEECCTTCCBC---CBCCEESSHHHHHHHHHHH
T ss_pred --EEccCCCCCCccccccEEEeCCCCCCCcHHHHHHHHHhcCCCCceEEecCCCCCCCcccccCCCCCCHHHHHHHHHHH
Confidence 0111112234 7999998 678889999999999989999999888865431 1111
Q ss_pred ------CCCCCC-eeeecccccee
Q 003331 419 ------LSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 419 ------~~~~~~-~~s~~~~~~~~ 435 (829)
..||.| |||+||.++++
T Consensus 154 i~~~~~~~p~~l~G~S~GG~vA~~ 177 (319)
T 2hfk_A 154 ILRAAGDAPVVLLGHAGGALLAHE 177 (319)
T ss_dssp HHHHHTTSCEEEEEETHHHHHHHH
T ss_pred HHHhcCCCCEEEEEECHHHHHHHH
Confidence 227888 99999998877
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=90.24 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=62.5
Q ss_pred ccCCCCCCcchhhhccccccccccccccccccccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc--
Q 003331 255 LPMTSSGKVDYASLSASTSFTISAQHDADETKASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL-- 330 (829)
Q Consensus 255 lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l-- 330 (829)
-|-|.+||.++..-.. .....+++++.|+++|+++|++ ++|.++++||++|+|||.+++|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~------------~~~~~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~el~~~l~~ 71 (212)
T 2l22_A 4 SHHHHHHSSGLVPRGS------------HMVADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAAQWIREINK 71 (212)
T ss_dssp ------------------------------CCTTHHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHHHHHHHHHH
T ss_pred ccccccccCCCCccCC------------CCCCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHHHHHHHHHH
Confidence 4667888888744322 1123467899999999999998 67999999999999999999998865
Q ss_pred ----CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 331 ----GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 331 ----~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
.++...+|++||+..|+.++.....
T Consensus 72 ~~g~~l~~~~~~~~~Ti~~la~~l~~~~~ 100 (212)
T 2l22_A 72 HYQLKIPADGIYTYPVFKAFTQWVGTQLQ 100 (212)
T ss_dssp HTTCCCCTTHHHHCCBHHHHHHHHHTTSC
T ss_pred HHCCCCCHHHHHcCCCHHHHHHHHHHhcc
Confidence 4788899999999999999987654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.45 E-value=5e-05 Score=88.71 Aligned_cols=105 Identities=7% Similarity=-0.055 Sum_probs=72.8
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCc--e---eeceEEeeCCcEEEEEEeC---------CEEEEEEcCCCcEE
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--I---ECSAAVLADFSQVVVGCYK---------GKIYFLDYLTGDIY 551 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~---~~~~~~~~~~~~v~vg~~d---------g~l~~~d~~tG~~~ 551 (829)
+..++.+ ++.|+.||..||+..-.+..+.. . .....+++|++.|++++.+ +.++.||..+|+..
T Consensus 28 g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 28 HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
Confidence 3445554 78999999999987644443321 1 0125678999998888765 66789999999865
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEE
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVY 594 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w 594 (829)
. ..........+.+++++..|.+++ ++.||.+|..+|+...
T Consensus 106 ~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 106 T-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp C-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred E-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 3 222233356678888887777764 6789999999887554
|
| >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-07 Score=73.54 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
++++.++++|+++++. +.+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 3 ~i~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 76 (78)
T 1l0i_A 3 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGH 76 (78)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 4678899999999987 5789999998 9999999999998765 47778899999999999999765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-06 Score=98.58 Aligned_cols=132 Identities=9% Similarity=-0.079 Sum_probs=88.7
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCc---eeeceEEeeCCcEEEEEEe---------CCEEEEEEcCCCcEEEEEe
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGR---IECSAAVLADFSQVVVGCY---------KGKIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~---~~~~~~~~~~~~~v~vg~~---------dg~l~~~d~~tG~~~w~~~ 555 (829)
.++..+.++.|+.||..+|+..-.+..+.. ...++.+++|++.|++++. ++.|+.||..+|+.+....
T Consensus 28 ~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~ 107 (719)
T 1z68_A 28 EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE 107 (719)
T ss_dssp EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee
Confidence 444455688999999999987654433221 1346789999998888765 6899999999997732112
Q ss_pred cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc--c----------------cccceeecCCCEEEE
Q 003331 556 TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS--I----------------FGSPAIDEVHDVLYV 617 (829)
Q Consensus 556 ~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~--~----------------~~~~~~~~~~~~l~v 617 (829)
.... ...+.+++++..|.++. ++.|+.||..+|+.......+.. + ...+.+++++..|++
T Consensus 108 l~~~-~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 108 LPRP-IQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CCSS-BCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred cCcc-cccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 2222 34567777777777765 67999999998876543222211 1 136778887888887
Q ss_pred EecC
Q 003331 618 ASTS 621 (829)
Q Consensus 618 ~t~~ 621 (829)
++.+
T Consensus 186 ~~~d 189 (719)
T 1z68_A 186 AEFN 189 (719)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 7643
|
| >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-07 Score=74.50 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHhcccCcc---eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHALMVE---EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~---~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++++.+.++|++.++++ .+.++++|+++|+|||.+++|...| .++...++.++|+..|+.++.+..
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 78 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLL 78 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHHHHHHHH
Confidence 567889999999999985 7999999999999999999998765 477888999999999999987653
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.42 E-value=6.7e-05 Score=86.54 Aligned_cols=226 Identities=9% Similarity=0.007 Sum_probs=128.6
Q ss_pred EEEecCCCcEEEEECC--C-CcEEEEEEc-----CCceeeceEEeeCCcEEEEEEeC----------CEEEEEEcCC---
Q 003331 489 LFVGSHSHKFICADAK--R-SSVLWEIKL-----EGRIECSAAVLADFSQVVVGCYK----------GKIYFLDYLT--- 547 (829)
Q Consensus 489 l~igs~~g~l~~~d~~--t-g~~~w~~~~-----~~~~~~~~~~~~~~~~v~vg~~d----------g~l~~~d~~t--- 547 (829)
+|....+..|+.+|.. + ++.. .+.. +......+.+++|++.|++.+.+ ..|+.||..+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 4443346779999976 3 5543 2222 23344577899999999888776 5899999988
Q ss_pred ---CcEEEEEe-cCCeeeeeeeeecCCCEEEEeccC--------CeEEEEEcC-CC---eEEEeeccCCcccccceeecC
Q 003331 548 ---GDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSHD--------HNLYALDFR-NY---RCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 548 ---G~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~~--------g~l~~~d~~-tg---~~~w~~~~~~~~~~~~~~~~~ 611 (829)
|+... .. .+......+.+++++..|++.+.+ ..|+.+|.. +| +..............+.++++
T Consensus 174 ~~~~~~~~-l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 174 ADRSAVRE-LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp TCGGGSEE-SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ccCCceeE-EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 66643 22 233445567788888888776644 379999998 67 443333222334456677766
Q ss_pred CCEEEEEecCC--eEEEEEccCCCceEEEeeccCCcc--------eeeeeeeecCCEEEEEeeCCe--EEEEc-CCCCEE
Q 003331 612 HDVLYVASTSG--RLTAISVKALPFHTLWLHELEVPA--------FASLCITSANRHVICCLVDGH--VVALD-SSGSII 678 (829)
Q Consensus 612 ~~~l~v~t~~g--~l~~~~~~~~~g~~~w~~~~~~~~--------~~s~~~~~~~~~l~~~~~~g~--i~~~d-~~g~~~ 678 (829)
+..++++..++ .|+.+|.++ |+........... ..+..+.+++..++.++. +. |+.+| .+|+ +
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~ 328 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPAT--GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L 328 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTT--CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E
T ss_pred CeEEEEECCCCCeEEEEEECCC--CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E
Confidence 66555555566 788888765 5543222211111 122334445566666655 54 45556 4444 4
Q ss_pred EEeecCCceeecCcccccCCCeEEEEeeC---CeEEEEeCCCCcEE
Q 003331 679 WRCRTGGPIFAGPCTSFALPSQVLICSRN---GSIYSFEQESGNLL 721 (829)
Q Consensus 679 w~~~~~~~~~~~~~~~~~~~~~i~~~t~~---g~l~~~d~~tG~~~ 721 (829)
..+......... +...+.+..+++.+.. ..|+.+|..+|+..
T Consensus 329 ~~l~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 329 VDAAGPWTEWAA-TLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EECCSSCCEEEE-EEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEecCCCCeEEE-EEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 444332222211 1022223344444333 36899998888764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-05 Score=88.50 Aligned_cols=217 Identities=12% Similarity=0.047 Sum_probs=124.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCE----------------EEEEEcCCCcE--EEEEecC-
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGK----------------IYFLDYLTGDI--YWTFQTC- 557 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~----------------l~~~d~~tG~~--~w~~~~~- 557 (829)
.|+.+|+.+|+.+-....... ...+.+++|++.|+.++.++. |+.++..+++. ...+...
T Consensus 152 ~i~v~d~~tg~~~~~~~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp EEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEECCCCCCCcccccCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 799999999987643211111 235788889999998887765 99999988862 2222222
Q ss_pred -CeeeeeeeeecCCCEEEEecc-----CCeEEEEEcCC------CeE-EEeeccCCcccccceeecCCCEEEEEecC---
Q 003331 558 -GEVKCQPVVDAPRQLIWCGSH-----DHNLYALDFRN------YRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTS--- 621 (829)
Q Consensus 558 -~~~~~~~~~~~~~~~i~~gs~-----~g~l~~~d~~t------g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--- 621 (829)
......+.++++++.|++.+. +..|+.+|..+ |+. ...+..+.... ...++.+++.+|+.+..
T Consensus 231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTCT
T ss_pred CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCCC
Confidence 223345667777888877654 56799999887 531 12222221111 12345556888877653
Q ss_pred -CeEEEEEccCCCceE-EEeecc-CCc--ceeeeeeeecCCEE-EEEeeCC--eEEEEc-CCCCEEEEeecCCceeecCc
Q 003331 622 -GRLTAISVKALPFHT-LWLHEL-EVP--AFASLCITSANRHV-ICCLVDG--HVVALD-SSGSIIWRCRTGGPIFAGPC 692 (829)
Q Consensus 622 -g~l~~~~~~~~~g~~-~w~~~~-~~~--~~~s~~~~~~~~~l-~~~~~~g--~i~~~d-~~g~~~w~~~~~~~~~~~~~ 692 (829)
+.|+.+++++ +.. .|+.-. ... ......+. +++.+ +....++ .|+.++ .+|+.+..+...........
T Consensus 310 ~~~l~~~d~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~ 386 (710)
T 2xdw_A 310 NYRLINIDFTD--PEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYS 386 (710)
T ss_dssp TCEEEEEETTS--CCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEE
T ss_pred CCEEEEEeCCC--CCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEe
Confidence 3599999876 431 232211 111 22333444 34444 4445555 467788 68886655554321111111
Q ss_pred ccccCCCeEEEEee----CCeEEEEeCCCCc
Q 003331 693 TSFALPSQVLICSR----NGSIYSFEQESGN 719 (829)
Q Consensus 693 ~~~~~~~~i~~~t~----~g~l~~~d~~tG~ 719 (829)
... .+..+++... -+.|+.+|..+|+
T Consensus 387 ~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 387 GQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred cCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 111 2345665533 3689999999887
|
| >2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=71.91 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++++.++++|+++++. +.+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 4 ~~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 79 (81)
T 2lol_A 4 TDKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIKYIKER 79 (81)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 356888999999999987 4699999996 9999999999998765 47788899999999999998764
|
| >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.2e-07 Score=72.01 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 290 LLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.++++|+++++. +.+.++++| +++|+|||.+++|...+ .++...++.++|+..|+.++.+..
T Consensus 2 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~~i~~~~ 75 (77)
T 2ehs_A 2 LEERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKV 75 (77)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 567889999999987 468999999 99999999999998765 477888999999999999997653
|
| >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.4e-07 Score=71.68 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHHhcccCcc--eeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 287 ASDLLQVIRKAFGHALMVE--EVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++++.+.++|++.++.+ .+.++++|| ++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 5 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2cnr_A 5 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 80 (82)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHHHHHH
Confidence 3568889999999999874 799999997 9999999999998865 47788899999999999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00027 Score=73.82 Aligned_cols=204 Identities=8% Similarity=0.010 Sum_probs=118.3
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---C--EEEEEEcCCCcEEEEEecCCeeeeeeeeecC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---G--KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP 569 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g--~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 569 (829)
++.|+.+|..+|+... + .....+.++++++.|+..+.+ + .|+.+|..+|+.......+. ...+.+.++
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCC
Confidence 4579999998887542 2 223467889998888776653 2 49999998888765544433 556677777
Q ss_pred CCEEEEeccC---------------------------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC-
Q 003331 570 RQLIWCGSHD---------------------------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS- 621 (829)
Q Consensus 570 ~~~i~~gs~~---------------------------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~- 621 (829)
+..|++.+.+ ..|+.+|..+|+.+..+.. . ....+.+++++ .++++..+
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~ 191 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHRE 191 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccc
Confidence 7777776532 5699999999987333333 2 44455666655 55655432
Q ss_pred --------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--------CeEEEEcCCCCEEEEeecC-
Q 003331 622 --------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--------GHVVALDSSGSIIWRCRTG- 684 (829)
Q Consensus 622 --------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--------g~i~~~d~~g~~~w~~~~~- 684 (829)
..|+.+| + |+....... ..... +++++..+++.+.+ ..|+.+| +|+........
T Consensus 192 ~~~~~~~~~~l~~~d--~--~~~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~ 262 (347)
T 2gop_A 192 IIPQYFKFWDIYIWE--D--GKEEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVD 262 (347)
T ss_dssp SSCCSSCCEEEEEEE--T--TEEEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCC
T ss_pred ccccccccccEEEeC--C--CceEEeccC--cceee--ECCCCCEEEEEEccccCCccccceEEEEC-CCceEeccccCC
Confidence 2577777 4 554322221 11122 26677777666533 4688888 55543222111
Q ss_pred CceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
..+...+. .. ++.++.++.++.+..| ..+|+..
T Consensus 263 ~~~~~~~~--~s-dg~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 263 RGVGQAKI--KD-GKVYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp SEEEEEEE--ET-TEEEEEEEETTEEEEE-EESSSEE
T ss_pred cccCCccE--Ec-CcEEEEEecCCcEEEE-EcCCceE
Confidence 12221122 22 4455566677755444 3356653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.36 E-value=6.8e-05 Score=86.89 Aligned_cols=155 Identities=7% Similarity=0.038 Sum_probs=91.8
Q ss_pred eeeeeeecCCCEEEEe-----ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe------------
Q 003331 561 KCQPVVDAPRQLIWCG-----SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR------------ 623 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~g-----s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~------------ 623 (829)
...+.+++++..|.+. +.+..|+.+|.++|+.+-...........+..++++..++.++.+..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 4556677777766643 23357999999999864111112222256778887788888777554
Q ss_pred -EEEEEccCCCc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCC----eEEEEc-CCCCEEEEeecCCceeecCcccc
Q 003331 624 -LTAISVKALPF--HTLWLHELEVPAFASLCITSANRHVICCLVDG----HVVALD-SSGSIIWRCRTGGPIFAGPCTSF 695 (829)
Q Consensus 624 -l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g----~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~ 695 (829)
|+.+++.+... ..+...........++.+++++..+++.+.++ .|+.++ .+++...-......... +..
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-~~~-- 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE-VHA-- 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE-EEE--
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE-EEe--
Confidence 99999887221 13333222222345677788888888777655 788888 56654322221111111 111
Q ss_pred cCCCeEEEEee----CCeEEEEeCCCCc
Q 003331 696 ALPSQVLICSR----NGSIYSFEQESGN 719 (829)
Q Consensus 696 ~~~~~i~~~t~----~g~l~~~d~~tG~ 719 (829)
..++ +|+.+. ++.|+.+|..+++
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 1233 777664 5789999988775
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00016 Score=83.39 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=95.2
Q ss_pred eCCcE-EEEEEe-CCEEEEEEcC--C-CcEEEEEec-----CCeeeeeeeeecCCCEEEEeccC----------CeEEEE
Q 003331 526 ADFSQ-VVVGCY-KGKIYFLDYL--T-GDIYWTFQT-----CGEVKCQPVVDAPRQLIWCGSHD----------HNLYAL 585 (829)
Q Consensus 526 ~~~~~-v~vg~~-dg~l~~~d~~--t-G~~~w~~~~-----~~~~~~~~~~~~~~~~i~~gs~~----------g~l~~~ 585 (829)
+|++. |+..+. +..|+.++.. + |+... +.. +......+.+++++..|++.+.+ ..|+.|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~-l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP-LTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE-CSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe-ccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence 67777 665543 5679999976 3 55432 222 23445667788888888887765 479999
Q ss_pred EcCC------CeEEEeeccCCcccccceeecCCCEEEEEecC--------CeEEEEEcc-CCCc---eEEEeeccCCcce
Q 003331 586 DFRN------YRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--------GRLTAISVK-ALPF---HTLWLHELEVPAF 647 (829)
Q Consensus 586 d~~t------g~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--------g~l~~~~~~-~~~g---~~~w~~~~~~~~~ 647 (829)
|..+ |+.......+......+.+++++..|++.+.+ ..|+.+|++ + | +............
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~--g~~~~~~~l~~~~~~~~ 244 (662)
T 3azo_A 167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED--GRFADTRTLLGGPEEAI 244 (662)
T ss_dssp ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT--SCEEEEEEEEEETTBCE
T ss_pred ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC--CcccccEEeCCCCCceE
Confidence 9988 66543220333455677888888888777644 379999988 5 5 3222222212334
Q ss_pred eeeeeeecCCEEEEEeeCC--eEEEEc-CCCCEE
Q 003331 648 ASLCITSANRHVICCLVDG--HVVALD-SSGSII 678 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g--~i~~~d-~~g~~~ 678 (829)
..+.+++++..++.+..++ .|+.+| .+|+..
T Consensus 245 ~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 245 AQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred cceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 5666777777555555555 788888 677653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.1e-05 Score=85.85 Aligned_cols=185 Identities=10% Similarity=-0.047 Sum_probs=106.7
Q ss_pred CCeEEEEecCC-----CcEEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEe-C----CEEEEEEcCCC
Q 003331 485 SDIYLFVGSHS-----HKFICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCY-K----GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~-----g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~-d----g~l~~~d~~tG 548 (829)
+++++|....+ +.|+..+..+|+..--++.. .....++.+++|++.|..... + ..|+.+|+.+|
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg 157 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG 157 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC
Confidence 34455544432 34677776666532222211 113457788899888775433 2 47999999999
Q ss_pred cEE-EEEecCCeee-eeeeeecCCCEEEEeccCCe-------------EEEEEcCCCe----EEEeeccCCcccccceee
Q 003331 549 DIY-WTFQTCGEVK-CQPVVDAPRQLIWCGSHDHN-------------LYALDFRNYR----CVYKLPCGGSIFGSPAID 609 (829)
Q Consensus 549 ~~~-w~~~~~~~~~-~~~~~~~~~~~i~~gs~~g~-------------l~~~d~~tg~----~~w~~~~~~~~~~~~~~~ 609 (829)
+.+ -. ... ... ..+.+.+++..|++++.+.. |+.++..+++ ++.....+......+.++
T Consensus 158 ~~~~~~-~~~-~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S 235 (695)
T 2bkl_A 158 EWSKVD-VIE-GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS 235 (695)
T ss_dssp CBCSSC-CBS-CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred CCcCCc-ccC-cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence 874 11 111 121 45677777778888777655 9999998875 444332222344566777
Q ss_pred cCCCEEEEEecCC----eEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee----CCeEEEEc-CCCC
Q 003331 610 EVHDVLYVASTSG----RLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV----DGHVVALD-SSGS 676 (829)
Q Consensus 610 ~~~~~l~v~t~~g----~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~----~g~i~~~d-~~g~ 676 (829)
+++..|++.+.++ .|+.++..+ ++........... ..+. ..+++ +++.+. ++.|+.+| .+++
T Consensus 236 pDG~~l~~~~~~~~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 236 RDGKYLFVYILRGWSENDVYWKRPGE--KDFRLLVKGVGAK-YEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp TTSCCEEEEEEETTTEEEEEEECTTC--SSCEEEEECSSCC-EEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred CCCCEEEEEEeCCCCceEEEEEcCCC--CceEEeecCCCce-EEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 7777777766555 677776544 4322211111111 2222 24555 766654 57899999 6654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-06 Score=96.54 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=92.0
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe---eeeeeeeecCCCEEEEecc---------CCeEEEEEcC
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE---VKCQPVVDAPRQLIWCGSH---------DHNLYALDFR 588 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~~i~~gs~---------~g~l~~~d~~ 588 (829)
++.+++++ .++..+.|+.|+.||..+|+.......+.. ....+.+++++..|++++. ++.|+.||..
T Consensus 20 ~~~~s~dg-~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQ-EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSS-EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCC-eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 45666776 444455689999999999988755443221 1345677778888887765 6889999999
Q ss_pred CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC-c-c----------------eeee
Q 003331 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV-P-A----------------FASL 650 (829)
Q Consensus 589 tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~-~-~----------------~~s~ 650 (829)
+|+.+...... .....+.+++++..|+++. ++.|+.++..+ |+......... . . ..++
T Consensus 99 ~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 99 NGEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp TTEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred CCccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 99874222222 2345677888777777765 67899999876 55432111111 1 0 1356
Q ss_pred eeeecCCEEEEEeeC
Q 003331 651 CITSANRHVICCLVD 665 (829)
Q Consensus 651 ~~~~~~~~l~~~~~~ 665 (829)
.+++++..+++++.+
T Consensus 175 ~wSPDG~~la~~~~d 189 (719)
T 1z68_A 175 WWSPNGKFLAYAEFN 189 (719)
T ss_dssp EECTTSSEEEEEEEE
T ss_pred EECCCCCEEEEEEEC
Confidence 788888888887754
|
| >2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.30 E-value=8e-07 Score=85.48 Aligned_cols=69 Identities=14% Similarity=0.352 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+...+++.++++|+++|++ +.++.+++||++|+|||.+++|...| .++...+|++||+..|+.+|.+..
T Consensus 127 ~~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~l~~~~ 203 (212)
T 2l22_A 127 QRESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADEVDRRV 203 (212)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 3467888999999999998 67999999999999999999998765 478889999999999999998754
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=7.3e-05 Score=87.36 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=74.3
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe--e-e--eeeeeecCCCEEEEeccC---------CeEEEEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE--V-K--CQPVVDAPRQLIWCGSHD---------HNLYALD 586 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~--~-~--~~~~~~~~~~~i~~gs~~---------g~l~~~d 586 (829)
++.+++++..++.+ |+.|+.||..+|+..-.+..+.. . . ....+++++..|++++.+ +.++.||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 56777777666664 89999999999987655443321 1 1 114567778888887654 5678999
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.++|++.. +.........+.+++++..|..+. ++.|+.++..+
T Consensus 99 ~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 99 LNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp TTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred CCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 99998653 322233456778888788776664 67899999876
|
| >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=7e-07 Score=70.64 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=57.9
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
+++++.+.++|+++++. +.+.++++| +++|+|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 78 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAK 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHH
Confidence 46788999999999987 468999999 99999999999998765 47788899999999999998764
|
| >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=71.48 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=60.7
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..+++++.+.++|++++++ +.|.++++|| ++|+|||.+++|...| .++...++.++|+..|+.++.+...
T Consensus 12 ~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 90 (99)
T 2dnw_A 12 TLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKD 90 (99)
T ss_dssp CHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHHhc
Confidence 3567889999999999987 5799999997 9999999999998765 3677789999999999999987653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0012 Score=67.94 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=122.3
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCC----CcEEEEEecCCeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLT----GDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~t----G~~~w~~~~~~~~~~~ 563 (829)
|++++. +.|..+|+.+++..-........ ..+.+...++.||+... ++.|+.++..+ ..........-.....
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p-~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYTSLIPNLRNV-VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEECSCSSE-EEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEECC-CeEEEEECCCcceEehhcCCCce-EEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 444444 45999999877654333222222 24556555667777654 57899999765 1222212211111223
Q ss_pred eeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEee
Q 003331 564 PVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~ 640 (829)
.+++..++.||+. ...+.|..+|....................++++.++.+|++... +.|+.++.+. +.....
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG---~~~~~~ 158 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYSL 158 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CCEEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC---CCeEEE
Confidence 3455446677765 456789999976543332222222222345677667888887753 6899998873 322111
Q ss_pred -ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCC
Q 003331 641 -ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 641 -~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
..........++..+++.+|+... .+.|..+|.+|.....+.........|. +..+ ++.+|+.. .++.|..+|+.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 111111234556656788888764 4689999844532222211100011111 1122 46777664 45789999988
Q ss_pred CCcEEEEE
Q 003331 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 238 ~g~~~~~i 245 (316)
T 1ijq_A 238 TGSDVNLL 245 (316)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEE
Confidence 88765433
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00056 Score=71.39 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=80.0
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---C--eEEEEEcCCCeEEEeeccCCcccccceeecC
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---H--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~ 611 (829)
++.|+.+|..+|+... + .....+.+++++..|++.+.+ + .|+.+|..+|+......... ...+.++++
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspd 114 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNED 114 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTT
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCC
Confidence 5679999998887643 2 223456777777777766543 2 49999999988765544433 556677776
Q ss_pred CCEEEEEecC---------------------------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 612 HDVLYVASTS---------------------------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 612 ~~~l~v~t~~---------------------------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
+..|++.+.+ ..|+.+|+.+ |+.+...... ....+.+.+++ .++++..
T Consensus 115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~~--~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEKP--RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--TEEEEEEEEE--TTCEEEEETTE-EEEEEEC
T ss_pred CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--CeEEeeecCC--CcccccCCCCe-EEEEEec
Confidence 7777776532 4688999887 6652222221 33455666665 5555543
Q ss_pred C---------CeEEEEcCCCCE
Q 003331 665 D---------GHVVALDSSGSI 677 (829)
Q Consensus 665 ~---------g~i~~~d~~g~~ 677 (829)
+ ..|+.+| +|+.
T Consensus 190 ~~~~~~~~~~~~l~~~d-~~~~ 210 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE-DGKE 210 (347)
T ss_dssp CCSSCCSSCCEEEEEEE-TTEE
T ss_pred ccccccccccccEEEeC-CCce
Confidence 2 2466666 5543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00083 Score=78.35 Aligned_cols=153 Identities=8% Similarity=-0.052 Sum_probs=92.9
Q ss_pred eeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCe-----------
Q 003331 518 IECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHN----------- 581 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~----------- 581 (829)
....+.+++|++.|..+..+ ..|+.+|+.+|+.+-.. ........+.+.++ +.|++++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence 34567888998887776543 35999999999886431 11111135667777 77777765543
Q ss_pred ---EEEEEcCCCe----EEEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccCCCceEE-E-eeccCCcce
Q 003331 582 ---LYALDFRNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKALPFHTL-W-LHELEVPAF 647 (829)
Q Consensus 582 ---l~~~d~~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~~~g~~~-w-~~~~~~~~~ 647 (829)
|+.++..++. +++...........+.+++++..|++.+.+ ..|+.+|+++ +... + .+.......
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~--~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTN--GKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEET--TEECCCEEEECSSSSC
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCC--CCCcccEEecCCCCce
Confidence 8899987764 333322221234556677777777776644 3799999887 4211 1 121111111
Q ss_pred eeeeeeecCCEEEEEeeC----CeEEEEc-CCC
Q 003331 648 ASLCITSANRHVICCLVD----GHVVALD-SSG 675 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~----g~i~~~d-~~g 675 (829)
..+ +.++++.+++.+.. +.|+.+| .++
T Consensus 320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 222 34678888888753 4599999 554
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00033 Score=75.76 Aligned_cols=114 Identities=11% Similarity=-0.028 Sum_probs=80.7
Q ss_pred eCCCeEEE----EecCCCcEEEEECCCC--------cEEEEEEc---CCceeeceEEeeC-CcEEEEEEeCCEEEEEEcC
Q 003331 483 KDSDIYLF----VGSHSHKFICADAKRS--------SVLWEIKL---EGRIECSAAVLAD-FSQVVVGCYKGKIYFLDYL 546 (829)
Q Consensus 483 ~d~~~~l~----igs~~g~l~~~d~~tg--------~~~w~~~~---~~~~~~~~~~~~~-~~~v~vg~~dg~l~~~d~~ 546 (829)
+.++..|+ .|+.++.|..||..++ +.+..... +.....+..+.++ +..+++++.|+.|+.||.+
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 34566777 5778999999998765 33233332 2333456677776 6788889999999999999
Q ss_pred CCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec
Q 003331 547 TGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597 (829)
Q Consensus 547 tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~ 597 (829)
+++.......+........+.+++..|++|+.||.|+.||.+ ++....+.
T Consensus 181 ~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 181 ETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp SSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred CCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 987665444333344555677778899999999999999988 65554443
|
| >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-06 Score=67.84 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++++.+++++++.+++ +.+.++.+|+ ++|.|||.+++|...| .++...++.++|+..|+.++.++.
T Consensus 3 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (81)
T 3gzm_A 3 LKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHHh
Confidence 457888999999999987 5699999997 9999999999998765 467788999999999999998754
|
| >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-06 Score=69.49 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCcc---eec--cCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 290 LLQVIRKAFGHALMVE---EVL--HHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~---~i~--~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.++++|++.++.+ .+. ++.+|+++|+|||.+++|...| .++...++.++|+..++.++.++.
T Consensus 5 ~~~~l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 80 (83)
T 1or5_A 5 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 80 (83)
T ss_dssp CHHHHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHHHHHHh
Confidence 4677889999999874 577 8899999999999999998875 367778999999999999987643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0022 Score=63.94 Aligned_cols=194 Identities=10% Similarity=-0.075 Sum_probs=110.4
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
.++.||+... ++.|+.+|..++................++..+++.+|+... .+.|+.+|..................
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~ 125 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR 125 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc
Confidence 4677887764 578999998765543222221112224455556678888765 46899999653322222222211223
Q ss_pred eeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEE
Q 003331 563 QPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w 638 (829)
...+++.++.+|+.... +.|+.++.......-...........++++.+++.||++.. .+.|+.++++. +....
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g--~~~~~ 203 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--PGRRK 203 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--EEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC--CceEE
Confidence 34566557888887653 67888886532211111111122334566766788988775 46899999874 33222
Q ss_pred eeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeec
Q 003331 639 LHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~ 683 (829)
.... ...... +..+++.+|++.. ++.|..+| .+|+.+-....
T Consensus 204 ~~~~-~~~P~g--i~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 204 VLEG-LQYPFA--VTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp EEEC-CCSEEE--EEEETTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred EecC-CCCceE--EEEeCCEEEEEECCCCeEEEEeCCCCCceEEEcc
Confidence 2221 111122 3345788888875 47899999 78887766544
|
| >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-06 Score=68.31 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=56.7
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHh
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLE 352 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~ 352 (829)
.+++++.++++|++.++. +.+.++++| +++|+|||.+++|...| .++...++.++|+..++.++.+
T Consensus 5 ~~~i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (81)
T 1f80_D 5 SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQN 79 (81)
T ss_dssp CCHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHHHHh
Confidence 356888999999999987 468999999 99999999999998765 4677789999999999988754
|
| >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii} | Back alignment and structure |
|---|
Probab=98.07 E-value=4e-06 Score=66.46 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=58.0
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..++++.+++++++.+++ ..+.++++|| ++|.|||.+++|...| .++...++.++|+..++.++.++
T Consensus 5 ~~~i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 80 (82)
T 2qnw_A 5 DRPLLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKA 80 (82)
T ss_dssp SHHHHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHHHHHHh
Confidence 456888999999999987 5789999995 9999999999998765 46778899999999999998765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0013 Score=76.55 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=88.7
Q ss_pred eeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCe------------
Q 003331 561 KCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGR------------ 623 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~------------ 623 (829)
...+.+++++..|.+++.+ ..|+.+|.++|+.+-.. ........+..+++ +.|++++.++.
T Consensus 165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 4456677777776665433 35999999999875431 11122356777777 88887775443
Q ss_pred --EEEEEccCCCc--eEEEeeccCCcceeeeeeeecCCEEEEEeeCC-----eEEEEc-CCC--C-EEEEeecCCceeec
Q 003331 624 --LTAISVKALPF--HTLWLHELEVPAFASLCITSANRHVICCLVDG-----HVVALD-SSG--S-IIWRCRTGGPIFAG 690 (829)
Q Consensus 624 --l~~~~~~~~~g--~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-----~i~~~d-~~g--~-~~w~~~~~~~~~~~ 690 (829)
|+.+++.+... ..++..........++.+++++..+++.+.++ .|+.+| .++ + .. .+.........
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~l~~~~~~~~~ 321 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT-ALIPDLKAQWD 321 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE-EEECSSSSCEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE-EecCCCCceEE
Confidence 88888766211 13332221111245667777888888777543 789999 666 3 22 22211111111
Q ss_pred CcccccCCCeEEEEeeC----CeEEEEeCCCC
Q 003331 691 PCTSFALPSQVLICSRN----GSIYSFEQESG 718 (829)
Q Consensus 691 ~~~~~~~~~~i~~~t~~----g~l~~~d~~tG 718 (829)
++ ...++.+++.+.. +.|+.+|..++
T Consensus 322 ~~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 322 FV--DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EE--EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EE--eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 11 1235678887763 45999998775
|
| >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-06 Score=69.08 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred HHHHHHHHhcccCcc------eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 291 LQVIRKAFGHALMVE------EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 291 ~~~l~~~~~~~l~~~------~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+.++++|.++++.. .+.++++|+++|+|||.+++|..+| .++...++.++|+..|+.++....
T Consensus 6 ~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~ 81 (95)
T 1nq4_A 6 LSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp HHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHHHHHHHH
Confidence 355677777777753 6889999999999999999998765 467788999999999999997654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0021 Score=67.48 Aligned_cols=196 Identities=14% Similarity=0.119 Sum_probs=117.8
Q ss_pred CCeEEEEec-CCCcEEEEECCCC----cEEEEEE-------cCCceeeceEEeeCCcEEEEEEeC-------CEEEEEEc
Q 003331 485 SDIYLFVGS-HSHKFICADAKRS----SVLWEIK-------LEGRIECSAAVLADFSQVVVGCYK-------GKIYFLDY 545 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg----~~~w~~~-------~~~~~~~~~~~~~~~~~v~vg~~d-------g~l~~~d~ 545 (829)
++.++|+.. .+++|+.+|..+. ++.-... .+..---...+.+++ +++.+.. ++|..+|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence 577888866 4688999998755 3332221 011000122345565 6664432 58999999
Q ss_pred CCCcEEEEEecCCee---eeeeeeecCCCEEEEec-------------------cCCeEEEEEcCCCeEEEeeccCCc--
Q 003331 546 LTGDIYWTFQTCGEV---KCQPVVDAPRQLIWCGS-------------------HDHNLYALDFRNYRCVYKLPCGGS-- 601 (829)
Q Consensus 546 ~tG~~~w~~~~~~~~---~~~~~~~~~~~~i~~gs-------------------~~g~l~~~d~~tg~~~w~~~~~~~-- 601 (829)
+|++++-+...+... ....-+.++.+.+++.. ..+.|+.||..+++.+.++..+..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 999998776543211 11123355667777764 367899999999998888877521
Q ss_pred ccc--cceeecCCCEEEEEe------cCCeEEEEEccCCCceEE--EeeccC------------------Ccceeeeeee
Q 003331 602 IFG--SPAIDEVHDVLYVAS------TSGRLTAISVKALPFHTL--WLHELE------------------VPAFASLCIT 653 (829)
Q Consensus 602 ~~~--~~~~~~~~~~l~v~t------~~g~l~~~~~~~~~g~~~--w~~~~~------------------~~~~~s~~~~ 653 (829)
.-. ...+++++..+|++. .++.|..|..+. |+.. ..++.. ......+.++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--CceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 111 123466778899887 456787766654 4311 111111 1122455677
Q ss_pred ecCCEEEEEee-CCeEEEEc-C---CCCEEEEeecC
Q 003331 654 SANRHVICCLV-DGHVVALD-S---SGSIIWRCRTG 684 (829)
Q Consensus 654 ~~~~~l~~~~~-~g~i~~~d-~---~g~~~w~~~~~ 684 (829)
.+++.+|+++. .+.|.+|| . +.+++-+..++
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECB
T ss_pred CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeC
Confidence 88999999986 46788888 4 23455555554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00087 Score=77.39 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=123.4
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-------------EEEEEEcCCCcE--EEEEecCC--
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-------------KIYFLDYLTGDI--YWTFQTCG-- 558 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-------------~l~~~d~~tG~~--~w~~~~~~-- 558 (829)
..|+.+|+.||+.+-. .....-..++.++ |++.|+..+.+. .||.++..++.. .-.+....
T Consensus 155 ~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~ 232 (693)
T 3iuj_A 155 REIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ 232 (693)
T ss_dssp EEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred EEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence 4699999999996532 1221112467888 888888888763 399999877642 22222222
Q ss_pred -eeeeeeeeecCCCEEEEecc----CCeEEEEEcCCCeE-EEeeccCCcccccceeecCCCEEEEEecC----CeEEEEE
Q 003331 559 -EVKCQPVVDAPRQLIWCGSH----DHNLYALDFRNYRC-VYKLPCGGSIFGSPAIDEVHDVLYVASTS----GRLTAIS 628 (829)
Q Consensus 559 -~~~~~~~~~~~~~~i~~gs~----~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~~----g~l~~~~ 628 (829)
.....+.+++++..|++... ...++.+|..+++. ...+.........+ +..+++.+|+.+.. +.|+.++
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d 311 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD 311 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 22345566777777766432 24799999877632 12222222222222 33446778777643 5799999
Q ss_pred ccCCCceE-EEee-ccCCcceeeeeeeecCCEEEEEeeCC---eEEEEcCCCCEEEEeecCCc-eeecCcccccCCCeEE
Q 003331 629 VKALPFHT-LWLH-ELEVPAFASLCITSANRHVICCLVDG---HVVALDSSGSIIWRCRTGGP-IFAGPCTSFALPSQVL 702 (829)
Q Consensus 629 ~~~~~g~~-~w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g---~i~~~d~~g~~~w~~~~~~~-~~~~~~~~~~~~~~i~ 702 (829)
+++ +.. .|+. ........ .+..+++.+++...++ .|+.++.+|........+.. ....... ...++.++
T Consensus 312 ~~~--~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~~~~~~~~~~-~~d~~~l~ 386 (693)
T 3iuj_A 312 AAN--PGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNG-KHDDPALY 386 (693)
T ss_dssp TTS--CCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSSSSEEEECCC-CTTCSCEE
T ss_pred CCC--CCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCCCceEEeeec-CCCCCEEE
Confidence 886 432 2322 11111112 5566677777665544 57888844555444443321 1111111 11245676
Q ss_pred EEeeC----CeEEEEeCCCCcEE
Q 003331 703 ICSRN----GSIYSFEQESGNLL 721 (829)
Q Consensus 703 ~~t~~----g~l~~~d~~tG~~~ 721 (829)
+...+ +.++.+|..+|+..
T Consensus 387 ~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 387 FGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEECSSSCCEEEEECTTTCCEE
T ss_pred EEecCCCCCCEEEEEECCCCeEE
Confidence 66554 78999999888754
|
| >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=8.2e-06 Score=69.28 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..++++.++++|++++++ ..+.++++|| ++|+|||.+++|...| .++...++.++|+..|+.++.....
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~~~ 82 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEE 82 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHHc
Confidence 356888999999999987 4689999996 9999999999998765 3677789999999999999987664
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0025 Score=65.12 Aligned_cols=184 Identities=11% Similarity=0.086 Sum_probs=104.6
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC---CEEEEEEcCCCcEEEEEecCC-e
Q 003331 485 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK---GKIYFLDYLTGDIYWTFQTCG-E 559 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d---g~l~~~d~~tG~~~w~~~~~~-~ 559 (829)
.++.||+.. .++.|+.+|..+ +.......+.. .....+..++ .+|++... ..|+.+|..+|++........ .
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~-p~gia~~~dG-~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 117 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGK-VSGLAFTSNG-DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 117 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTC-CEEEEEECSSE-EEEEEECTTS-CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCC-ceeEEEcCCC-cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc
Confidence 456688876 678999999875 44433444433 2344555565 47887643 259999988998765444322 1
Q ss_pred eeeeeeeecCCCEEEEec-cCCeEEEEEcCCCe-EEEeecc-------CCcccccceeecCCCEEEEEec-CCeEEEEEc
Q 003331 560 VKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYR-CVYKLPC-------GGSIFGSPAIDEVHDVLYVAST-SGRLTAISV 629 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~-~~w~~~~-------~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~ 629 (829)
....++. ..++.+|+.. .++.||.+|..+++ .+|.... ........-++.+++.+|++.. .+.|++++.
T Consensus 118 ~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 118 FLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp CEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEB
T ss_pred ccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCCCEEEEEEe
Confidence 1122222 2356677765 47899999988764 2332110 0111111112444678888764 568999998
Q ss_pred cCCCceE----EEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCE
Q 003331 630 KALPFHT----LWLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSI 677 (829)
Q Consensus 630 ~~~~g~~----~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~ 677 (829)
+.. |+. .+. .... ....++.. ++.+|++.. ++.|.+++.+|+.
T Consensus 197 ~~~-g~~~~~~~~~-~~~~--P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~ 244 (306)
T 2p4o_A 197 DST-DKPGEPEIFV-EQTN--IDDFAFDV-EGNLYGATHIYNSVVRIAPDRST 244 (306)
T ss_dssp CTT-SCBCCCEEEE-ESCC--CSSEEEBT-TCCEEEECBTTCCEEEECTTCCE
T ss_pred CCC-CCCCccEEEe-ccCC--CCCeEECC-CCCEEEEeCCCCeEEEECCCCCE
Confidence 641 321 111 1111 12334443 457888865 5789999966876
|
| >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.98 E-value=4e-07 Score=71.86 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhcccCcc--eeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMVE--EVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~--~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
+++++.++++|+++++.+ .+.++++| +++|+|||.+++|...| .++...++.++|+..++.++.++
T Consensus 3 ~~i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 77 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKA 77 (79)
T ss_dssp THHHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHHHHHHh
Confidence 367889999999999874 79999999 99999999998876543 46778899999999999998764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0021 Score=65.76 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=104.9
Q ss_pred ceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEee
Q 003331 521 SAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKL 596 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~ 596 (829)
.+++..++ .+|+.. .++.|+.+|..+ +........... ....+.. ++.+|++... ..++.+|..+|+.....
T Consensus 36 gia~~~~g-~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p-~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~~~~ 111 (306)
T 2p4o_A 36 NLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHATVEGKV-SGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLL 111 (306)
T ss_dssp EEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEECSSEE-EEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred eEEECCCC-CEEEEeCCCCeEEEECCCC-ceEEEEeCCCCc-eeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEEEEE
Confidence 45565554 477665 578999999654 444334444332 2333443 4557887643 25899998898875443
Q ss_pred ccCCc-ccccceeecCCCEEEEEe-cCCeEEEEEccCCCce-EEEeecc-------CCcceeeeeeeecCCEEEEEee-C
Q 003331 597 PCGGS-IFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFH-TLWLHEL-------EVPAFASLCITSANRHVICCLV-D 665 (829)
Q Consensus 597 ~~~~~-~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~-~~w~~~~-------~~~~~~s~~~~~~~~~l~~~~~-~ 665 (829)
..... ....++.. .++.+|+.. .+|.|+.+|..+ ++ .+|.... .........+..+++.+|+... .
T Consensus 112 ~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~--~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 112 TLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK 188 (306)
T ss_dssp ECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred eCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCC--CcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence 33221 11222222 356778776 478999999875 42 2332110 0111111223566778888764 5
Q ss_pred CeEEEEc-CC-CCEEE-E-eecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003331 666 GHVVALD-SS-GSIIW-R-CRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 666 g~i~~~d-~~-g~~~w-~-~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
+.|++++ .. |++.. + +... ....-+..+.+|.+|++.. ++.|..+|+. |++.
T Consensus 189 ~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 189 MLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred CEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 6888898 42 43210 0 0000 0111233455788999875 5789999975 7763
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00031 Score=73.39 Aligned_cols=218 Identities=8% Similarity=-0.015 Sum_probs=113.8
Q ss_pred CCCeEEEEecC---CC--cEEEEECCCCcEEEEEEc-----CC--ceeeceEEeeCCcEEEEEEe------CCEEEEEEc
Q 003331 484 DSDIYLFVGSH---SH--KFICADAKRSSVLWEIKL-----EG--RIECSAAVLADFSQVVVGCY------KGKIYFLDY 545 (829)
Q Consensus 484 d~~~~l~igs~---~g--~l~~~d~~tg~~~w~~~~-----~~--~~~~~~~~~~~~~~v~vg~~------dg~l~~~d~ 545 (829)
+.++++|++.. ++ .|..++ +|++. .+.. .. .......+..+ +.+|+... ++.|+.||+
T Consensus 25 ~~~g~~~v~~~~~~~~~~~l~~~~--~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~ 100 (343)
T 2qe8_A 25 TPDGRLFLSLHQFYQPEMQVAELT--QDGLI-PFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDT 100 (343)
T ss_dssp CTTSCEEEEECGGGCCSCSEEEEE--TTEEE-ESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCceEEEEEC--CCCee-cCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEEC
Confidence 35677887742 23 688888 67654 1110 00 11123445444 57887653 378999999
Q ss_pred CCCcEEEEEecCCe------eeeeeeeecCCCEEEEec----cCCeEEEEEcCCCeEEEeeccCCcccc-cceeecCCCE
Q 003331 546 LTGDIYWTFQTCGE------VKCQPVVDAPRQLIWCGS----HDHNLYALDFRNYRCVYKLPCGGSIFG-SPAIDEVHDV 614 (829)
Q Consensus 546 ~tG~~~w~~~~~~~------~~~~~~~~~~~~~i~~gs----~~g~l~~~d~~tg~~~w~~~~~~~~~~-~~~~~~~~~~ 614 (829)
++|+++.++..+.. .....+++.+++.+|+.. .++.|+.||..+|+.......+..... ...+..++..
T Consensus 101 ~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~ 180 (343)
T 2qe8_A 101 LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVP 180 (343)
T ss_dssp TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEE
T ss_pred CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEE
Confidence 99998776665321 112334554567888875 467899999998875433321111100 0011111122
Q ss_pred EEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC-eEEEEc-C---CCCEE----E-EeecC
Q 003331 615 LYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG-HVVALD-S---SGSII----W-RCRTG 684 (829)
Q Consensus 615 l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g-~i~~~d-~---~g~~~----w-~~~~~ 684 (829)
++....+|.+. .|.. ....+++++++..+|++...+ .++.++ . ++... + .+...
T Consensus 181 ~~~~~~~g~~~-----------~~~~-----~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (343)
T 2qe8_A 181 VQIGQPDGTVI-----------RPHL-----GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244 (343)
T ss_dssp CBEECTTSCEE-----------CCCC-----CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE
T ss_pred EEeccCCCcee-----------ceec-----ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec
Confidence 33333333221 1211 113456666777888876654 777776 2 22110 0 00000
Q ss_pred CceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003331 685 GPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
+..-...-+..+.++.+|++.. ++.|.+||+++|++.
T Consensus 245 g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 0000111233455788998864 578999998678753
|
| >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=8e-06 Score=67.70 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=55.2
Q ss_pred ccccHHHHHHHHHHhcccC----cceeccCCCccccCCChHHHHHHHHHc------CCcchhhh--cCCCHHHHHHHHHh
Q 003331 285 TKASDLLQVIRKAFGHALM----VEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIY--NFPTPSKLEIALLE 352 (829)
Q Consensus 285 ~~~~~~~~~l~~~~~~~l~----~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~--~~pt~~~la~~l~~ 352 (829)
.+.+++++.|+++|.++++ ..++.++++|+++|.|||.+++|...| .++...++ .++|+..++.++..
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~~v~~ 97 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKL 97 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHHHHHH
Confidence 3456788899999999875 467899999999999999999998765 36777777 78999999999876
Q ss_pred hc
Q 003331 353 KK 354 (829)
Q Consensus 353 ~~ 354 (829)
..
T Consensus 98 ~~ 99 (105)
T 2jq4_A 98 IL 99 (105)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00014 Score=78.60 Aligned_cols=146 Identities=13% Similarity=0.037 Sum_probs=96.7
Q ss_pred eCCCeEEEEecCCCcEEEEECCCC----------cEEEE------EEcCCceeeceEEeeCCcEEE----EEEeCCEEEE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRS----------SVLWE------IKLEGRIECSAAVLADFSQVV----VGCYKGKIYF 542 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg----------~~~w~------~~~~~~~~~~~~~~~~~~~v~----vg~~dg~l~~ 542 (829)
....+.+++++.++ +..++..+- ..... ..... ...+..++.++..++ .|+.|+.|..
T Consensus 45 s~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~lav~~~sgs~d~~v~i 122 (434)
T 2oit_A 45 SNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF-PIHHLALSCDNLTLSACMMSSEYGSIIAF 122 (434)
T ss_dssp ETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS-CEEEEEECTTSCEEEEEEEETTTEEEEEE
T ss_pred ecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC-cccEEEEcCCCCEEEEEEeccCCCceEEE
Confidence 44577888888777 776653210 01111 11112 234667888888888 4666899999
Q ss_pred EEcCCC--------cEEEEEec---CCeeeeeeeeecC-CCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeec
Q 003331 543 LDYLTG--------DIYWTFQT---CGEVKCQPVVDAP-RQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDE 610 (829)
Q Consensus 543 ~d~~tG--------~~~w~~~~---~~~~~~~~~~~~~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~ 610 (829)
||..++ +.+..+.. +........+.+. +..+.+++.||.|+.||..++........+........+.+
T Consensus 123 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wsp 202 (434)
T 2oit_A 123 FDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSP 202 (434)
T ss_dssp EEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECT
T ss_pred EEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcC
Confidence 998765 22222222 2333344456554 57788899999999999999876655443344455666777
Q ss_pred CCCEEEEEecCCeEEEEEcc
Q 003331 611 VHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 611 ~~~~l~v~t~~g~l~~~~~~ 630 (829)
++..+++++.+|.|..||.+
T Consensus 203 dg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 203 KGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TSSCEEEEETTSCEEEECTT
T ss_pred CCCEEEEEcCCCcEEEEccC
Confidence 78899999999999999987
|
| >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7.5e-06 Score=66.85 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=58.8
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
..+++++.+++++++.+++ +++.++.+|+ ++|.|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 19 t~~~i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~~i~~~ 95 (97)
T 3ejb_A 19 HMSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 95 (97)
T ss_dssp CCCCHHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHHHHHHh
Confidence 4467889999999999987 4799999997 9999999999998765 36777899999999999999765
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.2e-07 Score=91.93 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=55.1
Q ss_pred CCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcCCCccccccccccccCcccccccccccCccccchhh
Q 003331 317 GGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKGLCNLDVSADANWKLNLEEDKEHQFHSGYSRTENHA 390 (829)
Q Consensus 317 GgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (829)
|||||+|+||+++| ++++..+|++||+..|+.. ......+.+++|+|+..|....|.
T Consensus 1 GGdSL~a~~l~~rl~~~~g~~l~~~~lf~~pt~~~l~~l-----------------~~~~~~~~~l~~~hg~~g~~~~~~ 63 (316)
T 2px6_A 1 GSHNLACPTPKEDGLAQQQTQLNLRSLLVNPEGPTLMRL-----------------NSVQSSERPLFLVHPIEGSTTVFH 63 (316)
T ss_dssp -------------------------CCCCCTTSCSEEES-----------------CCCCCSSCCEEEECCTTCCSGGGH
T ss_pred CCchHHHHHHHHHHHHHHhhccchhhhhcCCCcCeeEEc-----------------ccCCCCCCeEEEECCCCCCHHHHH
Confidence 89999999998876 3788999999998754311 001223457999999999999999
Q ss_pred hhhcccccCCccccCCcccccCCC-------------CC-ccCCCCCC-eeeecccccee
Q 003331 391 VVSKRLKVNSTKYFKPELHHHKDG-------------LP-WNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 391 ~l~~~l~~~~~~y~~~~~~~~~~~-------------~~-~~~~~~~~-~~s~~~~~~~~ 435 (829)
.+.+.|. .++|+++.+...... .. .+..||.+ |||+|+.++++
T Consensus 64 ~~~~~l~--~~v~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~~~l~G~S~Gg~va~~ 121 (316)
T 2px6_A 64 SLASRLS--IPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVAFE 121 (316)
T ss_dssp HHHHHCS--SCEEEECCCTTSCTTCHHHHHHHHHHHHTTTCSSCCCEEEEETHHHHHHHH
T ss_pred HHHHhcC--CCEEEEECCCCCCcCCHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHH
Confidence 9999986 777776654200000 00 01237888 99999998877
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0054 Score=61.65 Aligned_cols=147 Identities=8% Similarity=0.091 Sum_probs=94.3
Q ss_pred CCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCC-------c-eeeceEEe--eCCcEEEEEEe--------------CC
Q 003331 484 DSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEG-------R-IECSAAVL--ADFSQVVVGCY--------------KG 538 (829)
Q Consensus 484 d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~-------~-~~~~~~~~--~~~~~v~vg~~--------------dg 538 (829)
..++++|+++ ..+.|..+|+.++... ....++ . ..+...+. +..+.|++... +.
T Consensus 22 ~~~g~~~vs~l~~g~V~~~~~~~~~~~-~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~ 100 (334)
T 2p9w_A 22 RTRQVFYQSNLYKGRIEVYNPKTQSHF-NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGAS 100 (334)
T ss_dssp TTTTEEEEEETTTTEEEEECTTTCCEE-EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCC
T ss_pred CCCCEEEEEeccCCEEEEEcCCCCeEE-EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCC
Confidence 3568999999 5899999999866543 233322 1 11233341 22367776443 57
Q ss_pred EEEEEEcC---CCcEEEEEecCC-----------e-eeeeeeeecCCCEEEE-eccC-CeEEEEEcCCCe-EEEeeccCC
Q 003331 539 KIYFLDYL---TGDIYWTFQTCG-----------E-VKCQPVVDAPRQLIWC-GSHD-HNLYALDFRNYR-CVYKLPCGG 600 (829)
Q Consensus 539 ~l~~~d~~---tG~~~w~~~~~~-----------~-~~~~~~~~~~~~~i~~-gs~~-g~l~~~d~~tg~-~~w~~~~~~ 600 (829)
.|.+||+. ||+.+|...... . ....-+..+..|.+|+ ++.. +.|+.+++.... ..|......
T Consensus 101 ~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~ 180 (334)
T 2p9w_A 101 SFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGN 180 (334)
T ss_dssp EEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCC
T ss_pred EEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCC
Confidence 79999999 999999887531 1 1122333445677777 7777 889999976432 335433211
Q ss_pred ----cccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 601 ----SIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 601 ----~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.-.+-+++.+++..|++....|.|+++|+.+
T Consensus 181 ~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 181 GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1134557777778888887799999999874
|
| >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.3e-05 Score=63.76 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=57.8
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.+++.+.+++++++.++. ..+.++++| .++|.|||.+++|...| .++...++.++|+..|+.++.++
T Consensus 7 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84)
T 2kwl_A 7 NDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHH
Confidence 356788899999999987 578999999 89999999999998765 46777899999999999998765
|
| >1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=63.63 Aligned_cols=65 Identities=18% Similarity=0.084 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcccCcc------eeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhc
Q 003331 290 LLQVIRKAFGHALMVE------EVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~~------~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+.+.+++++++.++.+ .+.++.+|+++|.|||.+++|...|+ ++...++.++|+..|+.++.++.
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 4677889999999874 46788999999999999999998763 67778999999999999998653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0072 Score=62.88 Aligned_cols=231 Identities=12% Similarity=-0.006 Sum_probs=122.7
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++++.. +.|..+++.+.+..-....... .....+...++.||+.. ..+.|+.++..++........+-......
T Consensus 44 ~~~ll~~~~-~~I~~i~~~g~~~~~~~~~~~~-~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 121 (349)
T 3v64_C 44 EPVLLFANR-IDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 121 (349)
T ss_dssp CCEEEEECB-SCEEEECTTSCCEEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred CceeEeecc-cceEEEeCCCCeeEEeecCCCc-eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE
Confidence 345555544 4588899876554332222222 22344554556777664 46789999976655433222221112334
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEee-
Q 003331 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLH- 640 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~- 640 (829)
+++..++.||+.. ..+.|+.++...................+++++.++.+|+.... +.|+.++.+. ......
T Consensus 122 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---~~~~~~~ 198 (349)
T 3v64_C 122 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---SGRRIIA 198 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CSCEESC
T ss_pred EEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---CCcEEEE
Confidence 5554567777654 45678888866433222221111222345677667888887653 6799998773 222111
Q ss_pred ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~t 717 (829)
..........++..+++.+|+... .+.|..+|.+|.....+-... ...|. +.. .++.+|+.. ..+.|..+|+.+
T Consensus 199 ~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEEEEecCCCCeEEEEEccC
Confidence 111111234566656888888754 467888884443222211111 11111 112 356777665 467889998877
Q ss_pred CcEEEEE
Q 003331 718 GNLLWEY 724 (829)
Q Consensus 718 G~~~w~~ 724 (829)
|+..-.+
T Consensus 276 G~~~~~i 282 (349)
T 3v64_C 276 GKNQEII 282 (349)
T ss_dssp CCSCEEE
T ss_pred CCccEEe
Confidence 8765443
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-05 Score=85.49 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=39.4
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC
Q 003331 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG 191 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~ 191 (829)
|++||+++++. ...+.|+||.+++++++|++|.+.+||.++.+
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDN 458 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHH
Confidence 99999999873 46899999999999999999999999999873
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0042 Score=65.74 Aligned_cols=233 Identities=12% Similarity=-0.020 Sum_probs=123.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
...++++.. +.|+.+|+.+++.......... .....+...++.||+.. ..+.|+.++..++...-....+.......
T Consensus 87 ~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~-~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl 164 (386)
T 3v65_B 87 EPVLLFANR-IDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL 164 (386)
T ss_dssp CCEEEEECB-SCEEEECTTSCCCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE
T ss_pred cceeEeecC-ccceeeccCCCcEEEEecCCCc-cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE
Confidence 445665554 4599999877665433322222 22445554556777654 46789999976655432222221112233
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEeec
Q 003331 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~~ 641 (829)
+++..++.||+.. ..+.|..++...................+++++.++.||++... +.|+.++.+...-..+..
T Consensus 165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-- 242 (386)
T 3v65_B 165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-- 242 (386)
T ss_dssp EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--
T ss_pred EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE--
Confidence 4554556676654 35678888765433222222111222345667667888887653 579999877411112211
Q ss_pred cCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCCCC
Q 003331 642 LEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
.........++..+++.+|+... .+.|..++.+|.....+-... ...|. +.. .++.+|+.. .++.|..+|+.+|
T Consensus 243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 11111234566656788887754 567888884443222221111 11111 112 345666654 5678999998788
Q ss_pred cEEEEEe
Q 003331 719 NLLWEYS 725 (829)
Q Consensus 719 ~~~w~~~ 725 (829)
+..-.+.
T Consensus 320 ~~~~~i~ 326 (386)
T 3v65_B 320 KNQEIIR 326 (386)
T ss_dssp CSCEEEE
T ss_pred cceEEEc
Confidence 7655443
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=5e-05 Score=82.98 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=40.2
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhCC
Q 003331 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRGH 192 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~ 192 (829)
|++||++++.. ...+.|+||.++++.+.|+++...+||+++.+.
T Consensus 400 Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 400 MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 99999999875 368999999999999999999999999999853
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0015 Score=70.20 Aligned_cols=190 Identities=10% Similarity=-0.039 Sum_probs=107.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEE-EEecCCe
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYW-TFQTCGE 559 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w-~~~~~~~ 559 (829)
++.||++...+.|+.+|+.+|++..... ........++..+++ ||+.... ..++.++...+.... .......
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~ 229 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARG 229 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSS
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCC
Confidence 5899998876889999998888653322 222223556777766 8888753 246667654332210 1111111
Q ss_pred eeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEee-ccCC-cccccceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003331 560 VKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKL-PCGG-SIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~-~~~~-~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
....++++.++.||++.. ++.|+.+|+.+|.....+ ..+. .....++++++++.||++.. .+.|+.++.+..++.
T Consensus 230 -P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 230 -AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp -BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred -CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 112344544788998764 567999999988773332 2221 11123667776777888765 568889887632232
Q ss_pred EE----EeeccCCc----------ce---eeeeee--------ecCCEEEEEee-CCeEEEEcCCCCEE
Q 003331 636 TL----WLHELEVP----------AF---ASLCIT--------SANRHVICCLV-DGHVVALDSSGSII 678 (829)
Q Consensus 636 ~~----w~~~~~~~----------~~---~s~~~~--------~~~~~l~~~~~-~g~i~~~d~~g~~~ 678 (829)
.. +.-..... .+ ...++. ..++.+|++.. +..|..++.+|.+.
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT 377 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEE
Confidence 11 10000000 01 122331 45677888764 46788888777544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0081 Score=63.82 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=121.3
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCc----EEEEEecCCeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGD----IYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~----~~w~~~~~~~~~~ 562 (829)
.|++... +.|..+|+.+............ .....+...++.||+... .+.|+.+++.... ..-.....-....
T Consensus 85 ~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~-~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEET-TEEEEECTTSCSCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEecc-ceeEEEccCCcceeEeccccCc-ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 3444443 5688999887665544332222 224455555567776653 5788888865421 1111111111122
Q ss_pred eeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+.. ..+.|..++++.....-...........+++++.++.||++.. .+.|+.++.+...-..+..
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 334554456666653 4577888887654433222222222234567766788988764 3679999887411112211
Q ss_pred eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEE-eeCCeEEEEeCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLIC-SRNGSIYSFEQE 716 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~-t~~g~l~~~d~~ 716 (829)
... ......++...++.+|++.. ...|..+|.+|.....+......+..|. +.. .++.||.. ...+.|+.+|+.
T Consensus 243 ~~l--~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 243 ENI--QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SSC--SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESS
T ss_pred CCC--CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcC
Confidence 111 12244566656788888753 5678888854543333321111111111 112 24455554 456789999988
Q ss_pred CCcEEEEEe
Q 003331 717 SGNLLWEYS 725 (829)
Q Consensus 717 tG~~~w~~~ 725 (829)
+|+.+-.+.
T Consensus 320 ~G~~~~~i~ 328 (400)
T 3p5b_L 320 TGSDVNLLA 328 (400)
T ss_dssp SCCCCEEEE
T ss_pred CCCceEEEe
Confidence 887665443
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.024 Score=59.56 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=126.8
Q ss_pred cEEEEECCC-----CcEEEEEEcCCc--------e-eeceE----Ee--eCCcEEEEEEe-CCEEEEEEcCCC----cEE
Q 003331 497 KFICADAKR-----SSVLWEIKLEGR--------I-ECSAA----VL--ADFSQVVVGCY-KGKIYFLDYLTG----DIY 551 (829)
Q Consensus 497 ~l~~~d~~t-----g~~~w~~~~~~~--------~-~~~~~----~~--~~~~~v~vg~~-dg~l~~~d~~tG----~~~ 551 (829)
.|..+|++. |+++.+..++.. . .|+.+ .+ .+..++|+.+. ++.||.+|.++. ++.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 577788776 888887776541 1 11211 23 55678888764 578999998755 444
Q ss_pred EEEe-------cCCeeeeeeeeecCCCEEEEec-cC------CeEEEEEcCCCeEEEeeccCCcc--cc-cceeecCCCE
Q 003331 552 WTFQ-------TCGEVKCQPVVDAPRQLIWCGS-HD------HNLYALDFRNYRCVYKLPCGGSI--FG-SPAIDEVHDV 614 (829)
Q Consensus 552 w~~~-------~~~~~~~~~~~~~~~~~i~~gs-~~------g~l~~~d~~tg~~~w~~~~~~~~--~~-~~~~~~~~~~ 614 (829)
...+ ++..-.....+.+ ++ ||+.. .+ +.|..+|.+|++++-+...+... +. ...+..+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence 4442 1111111112233 34 55532 22 68999999999998777644221 11 1234555666
Q ss_pred EEEEe-------------------cCCeEEEEEccCCCceEEEeeccCCcc----eeeeeeeecCCEEEEEee------C
Q 003331 615 LYVAS-------------------TSGRLTAISVKALPFHTLWLHELEVPA----FASLCITSANRHVICCLV------D 665 (829)
Q Consensus 615 l~v~t-------------------~~g~l~~~~~~~~~g~~~w~~~~~~~~----~~s~~~~~~~~~l~~~~~------~ 665 (829)
+++.. ....|..||.++ ++.+.++..+... .....+.+++..+|+++. +
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls 279 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS 279 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC
Confidence 66653 257899999987 7777777765221 111233667888998875 4
Q ss_pred CeEEEEc-CCCCEEEEe--ecCCc-----e----------eecC-cccc-cCCCeEEEEee-CCeEEEEeCC---CCcEE
Q 003331 666 GHVVALD-SSGSIIWRC--RTGGP-----I----------FAGP-CTSF-ALPSQVLICSR-NGSIYSFEQE---SGNLL 721 (829)
Q Consensus 666 g~i~~~d-~~g~~~w~~--~~~~~-----~----------~~~~-~~~~-~~~~~i~~~t~-~g~l~~~d~~---tG~~~ 721 (829)
+.|.++. .+|+..... ..... + -..+ .+.. ..+..||+++. .+.|..||.. +.+++
T Consensus 280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLT 359 (462)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence 5777776 445321111 01110 0 0111 1111 23457888875 5789999864 23455
Q ss_pred EEEecC
Q 003331 722 WEYSVG 727 (829)
Q Consensus 722 w~~~~~ 727 (829)
-+...+
T Consensus 360 ~~I~tG 365 (462)
T 2ece_A 360 GKVKLG 365 (462)
T ss_dssp EEEECB
T ss_pred EEEEeC
Confidence 455544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0034 Score=68.44 Aligned_cols=231 Identities=12% Similarity=0.102 Sum_probs=139.2
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcC--CceeeceEEe-eCCcEEEEEE------------------eCCEEEE
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLE--GRIECSAAVL-ADFSQVVVGC------------------YKGKIYF 542 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~-~~~~~v~vg~------------------~dg~l~~ 542 (829)
++.++|+... +++|..+|+.+.++.....++ .......... ++++++|+++ +++.+-+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4678999775 467999999999988755554 3333333334 7888999984 4567999
Q ss_pred EEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC--------------------------------------eEEE
Q 003331 543 LDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH--------------------------------------NLYA 584 (829)
Q Consensus 543 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g--------------------------------------~l~~ 584 (829)
+|.++.++.|+...++.. ....++.+++.+|+.+.+. .+..
T Consensus 180 ID~~t~~v~~qI~Vgg~p-d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNL-DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCCCc-cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 999999999998876532 2233455667777765432 3666
Q ss_pred EEcCC--CeE-EEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCce------------EEEeeccCCccee
Q 003331 585 LDFRN--YRC-VYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH------------TLWLHELEVPAFA 648 (829)
Q Consensus 585 ~d~~t--g~~-~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~------------~~w~~~~~~~~~~ 648 (829)
+|.++ ++. +..+..+... -...+++++..+|++.. +..+..+|.++ .+ .......+... .
T Consensus 259 ID~~~~~~~~~~~~Ipvg~~P-hGv~~sPDGk~v~V~~~~s~~VsVid~~~--~~~~~~~~l~~~~~v~~~v~vG~gP-~ 334 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIANNP-HGCNMAPDKKHLCVAGKLSPTVTVLDVTR--FDAVFYENADPRSAVVAEPELGLGP-L 334 (595)
T ss_dssp EECSGGGCCSSEEEEEEESSC-CCEEECTTSSEEEEECTTSSBEEEEEGGG--HHHHHHSCCCGGGGEEECCBCCSCE-E
T ss_pred EeCcccCCceeEEEEecCCCc-eEEEEcCCCCEEEEeCCCCCeEEEEECcc--cccccccccCcccceEEEcCCCCCc-c
Confidence 77766 443 3333332211 22345666788888764 56899999885 32 22333322211 2
Q ss_pred eeeeeecCCEEEEEe-eCCeEEEEc-CC----------CCEEEEeecCCc---eeecCcccccCCC-eEEEEeeC--CeE
Q 003331 649 SLCITSANRHVICCL-VDGHVVALD-SS----------GSIIWRCRTGGP---IFAGPCTSFALPS-QVLICSRN--GSI 710 (829)
Q Consensus 649 s~~~~~~~~~l~~~~-~~g~i~~~d-~~----------g~~~w~~~~~~~---~~~~~~~~~~~~~-~i~~~t~~--g~l 710 (829)
...+..++ ++|+.. .++.+..|| .+ .+++-+...+.. ...+.......|| .+|+.+.- ..+
T Consensus 335 h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 34555555 777765 478899999 55 445555555422 2222222223344 56666431 123
Q ss_pred -----------EEEeCCCCcEE
Q 003331 711 -----------YSFEQESGNLL 721 (829)
Q Consensus 711 -----------~~~d~~tG~~~ 721 (829)
..+|.+++++.
T Consensus 414 ~~~gp~~~~~~ql~dis~~~m~ 435 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDISGDKMV 435 (595)
T ss_dssp CCCCSSCCEEEEEEECSSSSCE
T ss_pred ccCCCCCCCcceEEEcCCCcEE
Confidence 67888777643
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=80.21 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=57.6
Q ss_pred EecCceEEEcc----CCcEEEEeecCCcEEECCeeeChHHHHHHHhC------C--CCeeEEEEEEeecCCceEEEEEEE
Q 003331 149 FRTGDFARRIQ----SGDLVFLGRKDRTIKINGQRMALEEIEHTLRG------H--PDVVDTAVVSHKHQGELVILVAFI 216 (829)
Q Consensus 149 ~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~------~--~~v~~~~v~~~~~~~~~~~~~~~v 216 (829)
|++||++++.. ...+.|+||.++++++.|+++.+.+||.++.+ . -.|.+-.+......... .-+.+.
T Consensus 407 Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~-hyv~~w 485 (581)
T 4epl_A 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG-HYAIFW 485 (581)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC-EEEEEE
T ss_pred EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC-cEEEEE
Confidence 99999999864 25799999999999999999999999998874 1 24566555443222222 334444
Q ss_pred EecCCCCchHHHHHHHHHHHHhcC
Q 003331 217 VLKEKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~l~~~l 240 (829)
++... ..+...+++...|.+.|
T Consensus 486 E~~~~--~~~~~l~~~~~~Ld~~L 507 (581)
T 4epl_A 486 EISGE--TNEDVLQDCCNCLDRAF 507 (581)
T ss_dssp EESSC--CCHHHHHHHHHHHHHHC
T ss_pred eecCC--CCHHHHHHHHHHHHHHh
Confidence 65432 22233444444444444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0041 Score=62.48 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=96.8
Q ss_pred ceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCC-------e-eeeeeeee--cCCCEEEEecc-----------
Q 003331 521 SAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCG-------E-VKCQPVVD--APRQLIWCGSH----------- 578 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~-------~-~~~~~~~~--~~~~~i~~gs~----------- 578 (829)
++.+....+.+|+++ +.++|+.||+.+|...-. ...+ . ..+...+. +..+.||+...
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 456656567899998 689999999876654322 2322 1 12333442 33477887433
Q ss_pred ---CCeEEEEEcC---CCeEEEeeccCC-------------cccccceeecCCCEEEE-EecC-CeEEEEEccCCCceEE
Q 003331 579 ---DHNLYALDFR---NYRCVYKLPCGG-------------SIFGSPAIDEVHDVLYV-ASTS-GRLTAISVKALPFHTL 637 (829)
Q Consensus 579 ---~g~l~~~d~~---tg~~~w~~~~~~-------------~~~~~~~~~~~~~~l~v-~t~~-g~l~~~~~~~~~g~~~ 637 (829)
+..|.++|+. +|+.+|...+.. .....++++. ++.+|| ++.. +.|+.++++.. -...
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 4679999999 999999887531 1234455665 566777 7778 88999998842 1233
Q ss_pred EeeccCC----cceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 638 WLHELEV----PAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 638 w~~~~~~----~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
|...... ..+..+++.+++..+++....+.|+++|
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 5433211 1134566777788888887788999999
|
| >2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-05 Score=62.00 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=48.8
Q ss_pred HHHHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 293 VIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 293 ~l~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++..+++|++ +.|.++..|+++|.|||+|++|.++| .++...++. +|+..|+..+....
T Consensus 10 ~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~~v~~~~ 79 (91)
T 2cg5_B 10 DLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSKAD 79 (91)
T ss_dssp THHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHCC-
T ss_pred HHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHHHHhccc
Confidence 455566677775 46899999999999999999998876 367778877 69999999887654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0029 Score=69.01 Aligned_cols=186 Identities=8% Similarity=0.039 Sum_probs=115.5
Q ss_pred CCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC--Ceeeeeeeee-cCCCEEEEec------------------cCCeEEE
Q 003331 527 DFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC--GEVKCQPVVD-APRQLIWCGS------------------HDHNLYA 584 (829)
Q Consensus 527 ~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~-~~~~~i~~gs------------------~~g~l~~ 584 (829)
||.++|+... ++.|.++|+.+.++......+ .......... ++++++|+++ +++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 5668888765 457999999999988755543 3333333323 6788999983 3457999
Q ss_pred EEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC--------------------------------------eEEE
Q 003331 585 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG--------------------------------------RLTA 626 (829)
Q Consensus 585 ~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g--------------------------------------~l~~ 626 (829)
+|.++.+..|+...++. .....++.+++.+|+.+.+. .+.+
T Consensus 180 ID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 99999999999988653 23344555678888877542 2444
Q ss_pred EEccCCCceE-EEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCC------------EEEEeecCCceeecC
Q 003331 627 ISVKALPFHT-LWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGS------------IIWRCRTGGPIFAGP 691 (829)
Q Consensus 627 ~~~~~~~g~~-~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~------------~~w~~~~~~~~~~~~ 691 (829)
+|..+..++. +.....+. ......++++++++++... +..+.++| .+.+ +..+...+......
T Consensus 259 ID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~- 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT- 336 (595)
T ss_dssp EECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEE-
T ss_pred EeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceE-
Confidence 5544311222 11222111 1134567778888888764 57799998 5432 33344443322222
Q ss_pred cccccCCCeEEEEe-eCCeEEEEeCCC
Q 003331 692 CTSFALPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 692 ~~~~~~~~~i~~~t-~~g~l~~~d~~t 717 (829)
.++.+|.+|+.. .++.|..||.++
T Consensus 337 --aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 337 --AFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp --EECTTSEEEEEETTTTEEEEEEHHH
T ss_pred --EECCCCeEEEEEecCCcEEEEEhhH
Confidence 244466888765 478899999876
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.022 Score=58.26 Aligned_cols=225 Identities=9% Similarity=0.046 Sum_probs=114.4
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCC----CeEEEeeccCCccccc
Q 003331 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRN----YRCVYKLPCGGSIFGS 605 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~t----g~~~w~~~~~~~~~~~ 605 (829)
|++.. ...|..+|+.+++.......... ...+.++..++.||+.. .++.|+.+|+.+ ................
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~-p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSS-EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCc-eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 44444 35589999887765443322222 23455665567777764 457899999775 1211112111112234
Q ss_pred ceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEee
Q 003331 606 PAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCR 682 (829)
Q Consensus 606 ~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~ 682 (829)
++++..++.||+.. ..+.|..++++. .................++.+.++.+|+.... +.|+.++.+|+..-.+.
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 45654467887764 467899998774 22211121111122445566668888887653 68888885565432221
Q ss_pred cCCceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEE-ecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 683 TGGPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEY-SVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 683 ~~~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
.. . +..| .+..+ .++.||+.. ..+.|+.+|.+ |.....+ ...... ..|. .+. ...+..+|+..
T Consensus 160 ~~-~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~-~~P~---gia------v~~~~ly~~d~ 226 (316)
T 1ijq_A 160 TE-N-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRL-AHPF---SLA------VFEDKVFWTDI 226 (316)
T ss_dssp CS-S-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTT-SSEE---EEE------EETTEEEEEET
T ss_pred EC-C-CCCceEEEEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCcc-CCcE---EEE------EECCEEEEEEC
Confidence 11 1 1111 12233 356788775 45689999976 4322222 111111 0010 000 01144445555
Q ss_pred cCCcEEEEEeecCc
Q 003331 759 SSGSIHILRVNLDV 772 (829)
Q Consensus 759 ~~G~l~~~d~~~~~ 772 (829)
.++.|..++..++.
T Consensus 227 ~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 227 INEAIFSANRLTGS 240 (316)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEeCCCCc
Confidence 56789999876553
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0064 Score=65.26 Aligned_cols=144 Identities=7% Similarity=-0.010 Sum_probs=87.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC-----EEEEEEcCCCcEEE--EEecC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG-----KIYFLDYLTGDIYW--TFQTC 557 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg-----~l~~~d~~tG~~~w--~~~~~ 557 (829)
.++.||+....+.|+.+|+.++++.-... ........++..+++.||+..+.+ .++.++. +|.... .+...
T Consensus 148 ~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~ 225 (430)
T 3tc9_A 148 NHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG 225 (430)
T ss_dssp EEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC
T ss_pred CCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC
Confidence 46889998876889999998776543222 222233566777777899987632 4666774 443321 11111
Q ss_pred CeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEEe-cCCeEEEEEccC
Q 003331 558 GEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKA 631 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~ 631 (829)
.. ....++++.++.||++. .++.|+.+|+.++.......... .....++++++++.+|+.. .++.|+.++.+.
T Consensus 226 ~~-p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 226 QN-CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SS-CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 11 12233555467788775 45789999998876532222222 2223466777677788775 467888888764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.012 Score=57.49 Aligned_cols=197 Identities=10% Similarity=0.043 Sum_probs=112.2
Q ss_pred eceEEeeCCcEEEE-EEeCCEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEE--
Q 003331 520 CSAAVLADFSQVVV-GCYKGKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVY-- 594 (829)
Q Consensus 520 ~~~~~~~~~~~v~v-g~~dg~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w-- 594 (829)
+..++.++++.+|+ ...++.|+.+|+. |+++.++...+.. .....+. .++.+++.+ .++.++.++......+|
T Consensus 30 SGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~~~ 107 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVKIL 107 (255)
T ss_dssp EEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred ceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeeeee
Confidence 34556666678886 5557789999976 9998887664321 1122233 445666654 45678888765433233
Q ss_pred -eeccC------CcccccceeecCCCEEEEEecCC--eEEEEEc--cCCCceEEEe----eccCCcceeeeeeeecCCEE
Q 003331 595 -KLPCG------GSIFGSPAIDEVHDVLYVASTSG--RLTAISV--KALPFHTLWL----HELEVPAFASLCITSANRHV 659 (829)
Q Consensus 595 -~~~~~------~~~~~~~~~~~~~~~l~v~t~~g--~l~~~~~--~~~~g~~~w~----~~~~~~~~~s~~~~~~~~~l 659 (829)
..... ..-+-..++++.++++|++.... .|+.++- .+..-..... .......+++..+.+..+.+
T Consensus 108 ~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~l 187 (255)
T 3qqz_A 108 KKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTL 187 (255)
T ss_dssp EEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEE
T ss_pred eeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeE
Confidence 22111 11223456777778999987643 4666651 1100111111 01111223566777778888
Q ss_pred EEEeeC-CeEEEEcCCCCEEEEeecCCce------eec-CcccccCCCeEEEEeeCCeEEEEeCCCC
Q 003331 660 ICCLVD-GHVVALDSSGSIIWRCRTGGPI------FAG-PCTSFALPSQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 660 ~~~~~~-g~i~~~d~~g~~~w~~~~~~~~------~~~-~~~~~~~~~~i~~~t~~g~l~~~d~~tG 718 (829)
|+-+.. ..|..+|.+|+++-........ +.. --+..+.+|++|+.++-+.+|.|.+..+
T Consensus 188 liLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~~~~ 254 (255)
T 3qqz_A 188 LVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTPQSS 254 (255)
T ss_dssp EEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC---
T ss_pred EEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEecCC
Confidence 887764 5677788778877665544211 011 1234566788999998888888876543
|
| >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=7.2e-05 Score=61.10 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=58.3
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..++...+++++++.+++ ..+.++.+|.++|.|||.+++|...| .++...+...+|+..|+.++....
T Consensus 15 ~~~i~~~l~~ila~~l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~~I~~~~ 90 (100)
T 1vku_A 15 RKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 90 (100)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHHh
Confidence 456788899999998886 56889999999999999999998765 467778999999999999998754
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0034 Score=66.76 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=100.6
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEE---cCCceeeceEEee-CCcEEEEEEeCC----EEEEEEcCCCcEEEEEe
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIK---LEGRIECSAAVLA-DFSQVVVGCYKG----KIYFLDYLTGDIYWTFQ 555 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~---~~~~~~~~~~~~~-~~~~v~vg~~dg----~l~~~d~~tG~~~w~~~ 555 (829)
|..+.||+|+..| ++.++...+...|+.. .......+.++.+ +.+.+|+++..+ .|+..+ ++-..|+..
T Consensus 20 d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G~tW~~~ 96 (394)
T 3b7f_A 20 SGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGGGNWTEA 96 (394)
T ss_dssp CSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STTSCCEEC
T ss_pred CCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCCCCceEC
Confidence 4578999999887 7777765433457642 2333333444443 357899999877 788764 344456532
Q ss_pred cCC-----e----------eeeeeeeec-C-CCEEEEeccCCeEEEEEcCCCeEEEeeccC-------------------
Q 003331 556 TCG-----E----------VKCQPVVDA-P-RQLIWCGSHDHNLYALDFRNYRCVYKLPCG------------------- 599 (829)
Q Consensus 556 ~~~-----~----------~~~~~~~~~-~-~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~------------------- 599 (829)
... . ......+++ + .+.+|+++..+.|+..+ ..| ..|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG-~tW~~~~~~~~~p~~~~~~~~~~~g~~ 174 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHG-ASWEPVAGFNDHPMRRAWTGGEQDGTP 174 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STT-SBCEECHHHHTCTTHHHHHCCC----C
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCC-CCeEECcCccCCccccccccccccCCC
Confidence 210 0 111223332 2 68899998888888765 223 33543210
Q ss_pred -Ccccccceeec-CCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--------------cceeeeeeeec-CCEEEEE
Q 003331 600 -GSIFGSPAIDE-VHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--------------PAFASLCITSA-NRHVICC 662 (829)
Q Consensus 600 -~~~~~~~~~~~-~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--------------~~~~s~~~~~~-~~~l~~~ 662 (829)
...+..+.+++ +.+.+|+++..+.|+..+ + +...|+..... .......+.+. .+.+|++
T Consensus 175 ~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~--D--gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg 250 (394)
T 3b7f_A 175 DGPKMHSILVDPRDPKHLYIGMSSGGVFEST--D--AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQ 250 (394)
T ss_dssp CCCEEEEEEECTTCTTCEEEEEETBEEEEES--S--TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEE
T ss_pred CCCceeEEEECCCCCCEEEEEECCCCEEEEC--C--CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEE
Confidence 01122334443 347899998777776653 2 33456543211 01223333332 4789998
Q ss_pred eeCCeEEEEcCCCCEEEEe
Q 003331 663 LVDGHVVALDSSGSIIWRC 681 (829)
Q Consensus 663 ~~~g~i~~~d~~g~~~w~~ 681 (829)
+. ++|+..+..|+ .|+.
T Consensus 251 ~~-~gl~~s~D~G~-tW~~ 267 (394)
T 3b7f_A 251 NH-CGIYRMDRREG-VWKR 267 (394)
T ss_dssp ET-TEEEEEETTTT-EEEC
T ss_pred cC-CeEEEeCCCCC-cceE
Confidence 74 56766654443 4654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.004 Score=71.83 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=122.6
Q ss_pred ceEEeeCCcEEEEEEe-C----CEEEEEEcCCCcEEEEEecCCee-eeeeeeecCCCEEEEeccCC-------------e
Q 003331 521 SAAVLADFSQVVVGCY-K----GKIYFLDYLTGDIYWTFQTCGEV-KCQPVVDAPRQLIWCGSHDH-------------N 581 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~-d----g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~i~~gs~~g-------------~ 581 (829)
...+++|++.+..+.. . ..|+.+|+++|+.+-. ... .+ ...+.+. ++..|++.+.+. .
T Consensus 133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLK-DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEE-EEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccC-CceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 4567777776654432 2 3699999999997543 111 22 2456677 677777776653 3
Q ss_pred EEEEEcCCCe----EEEeecc-CCcccccceeecCCCEEEEEec----CCeEEEEEccCCCceEEEeeccCCcceeeeee
Q 003331 582 LYALDFRNYR----CVYKLPC-GGSIFGSPAIDEVHDVLYVAST----SGRLTAISVKALPFHTLWLHELEVPAFASLCI 652 (829)
Q Consensus 582 l~~~d~~tg~----~~w~~~~-~~~~~~~~~~~~~~~~l~v~t~----~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~ 652 (829)
|+.++..++. ++..... ......++..++++..|++... .+.++.+|+++..+... .+.........+ +
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~-~l~~~~~~~~~~-~ 287 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL-TVQGDLDADVSL-V 287 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE-EEECSSSSCEEE-E
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE-EEeCCCCceEEE-E
Confidence 8888887653 3443322 1222345666777777766543 24789999876222221 222222211222 4
Q ss_pred eecCCEEEEEee----CCeEEEEc-CCCCE-EEEeecC--CceeecCcccccCCCeEEEEee-CC--eEEEEeCCCCcEE
Q 003331 653 TSANRHVICCLV----DGHVVALD-SSGSI-IWRCRTG--GPIFAGPCTSFALPSQVLICSR-NG--SIYSFEQESGNLL 721 (829)
Q Consensus 653 ~~~~~~l~~~~~----~g~i~~~d-~~g~~-~w~~~~~--~~~~~~~~~~~~~~~~i~~~t~-~g--~l~~~d~~tG~~~ 721 (829)
..+++.+++.+. ++.|+.++ .++.. .|+.-.. .... .+... ++.|++... +| .|+.++.+++ ..
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~-~~ 362 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSG-SGYLFAEYMVDATARVEQFDYEGK-RV 362 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEE-TTEEEEEEEETTEEEEEEECTTSC-EE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEE-CCEEEEEEEECCeeEEEEEECCCC-ee
Confidence 556777777664 35788998 65543 2432111 1111 11122 345555544 44 6888887744 33
Q ss_pred EEEecCCccccccccccccccccccccCCCcEEEEEccC----CcEEEEEeecC
Q 003331 722 WEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS----GSIHILRVNLD 771 (829)
Q Consensus 722 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----G~l~~~d~~~~ 771 (829)
.....+.......+ +...++..+++...+ +.|+.+|..++
T Consensus 363 ~~l~~p~~~~~~~~----------~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 363 REVALPGLGSVSGF----------NGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEECCSSSSEEEEC----------CCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEeecCCCceEEee----------ecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 33333322111000 011225556655444 78999987655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.022 Score=65.79 Aligned_cols=232 Identities=12% Similarity=0.031 Sum_probs=119.5
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCc----EEEEEecCCeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGD----IYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~----~~w~~~~~~~~~~ 562 (829)
.|++... ..|+.+++..++.......... .....+....+.||+... .+.|+.+++.... ..-.+...-....
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~~~~~-~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEECSCSS-EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeecCCCc-eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4454443 4588888876554433222222 223445444566776654 4678888865321 1111111111122
Q ss_pred eeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+.. ..+.|+.+++......-...........++++...+.||++... +.|..++++. ...-.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG---~~~~~ 551 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---VDIYS 551 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---CCEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC---CceEE
Confidence 344554456677654 45788888876443222222122223345677767889987643 5788888874 32211
Q ss_pred -eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCC
Q 003331 640 -HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 640 -~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
..........+++...++.||++.. ...|..++.+|.....+......+..|.-....++.||+.. ..+.|+.+|..
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCC
Confidence 1111111234555556788888754 45788888555544333221111111111112355777764 56789999988
Q ss_pred CCcEEEEE
Q 003331 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 632 tG~~~~~l 639 (791)
T 3m0c_C 632 TGSDVNLL 639 (791)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEe
Confidence 88765444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.018 Score=60.75 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=115.1
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
..+++.. ...|+.+++.+++.......... .....++..++.||+.. ..+.|+.+++..+...-....+......++
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~-~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEecCCCc-cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 3455554 45699999876665443332222 23345555567777654 457899999876654332222222223456
Q ss_pred eecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecC
Q 003331 608 IDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+... .+.|.+++++...-..+..... ......++.+.++.+|+.... +.|+.++.+|.....+...
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l--~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL--EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC--CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 6655677877654 5678888776411112211111 122345566567888887643 5788888555433222111
Q ss_pred CceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 685 GPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
+ +..| .+..+ .++.||+.. ..+.|+.+|.+...................++ .+..+|+...++
T Consensus 244 ~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~------------~~~ly~td~~~~ 309 (386)
T 3v65_B 244 H--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF------------EDSLYWTDWHTK 309 (386)
T ss_dssp S--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE------------TTEEEEEETTTT
T ss_pred C--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE------------CCEEEEeeCCCC
Confidence 1 1111 12222 356777764 45678888865322211111110000001111 144555555677
Q ss_pred cEEEEEeecC
Q 003331 762 SIHILRVNLD 771 (829)
Q Consensus 762 ~l~~~d~~~~ 771 (829)
.|..++..+|
T Consensus 310 ~V~~~~~~~G 319 (386)
T 3v65_B 310 SINSANKFTG 319 (386)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 8988885544
|
| >4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.9e-05 Score=60.68 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~ 353 (829)
.++.+.+++++++.+++ +++.++.+| .++|.|||.+++|...| .++...+...+|+..|+.++.++
T Consensus 25 mei~~~l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 25 MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKFINSL 99 (101)
T ss_dssp TTHHHHHHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHHHHc
Confidence 35778899999999987 468999999 89999999999998765 36777899999999999998754
|
| >2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.67 E-value=1.3e-05 Score=66.05 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHcC------CcchhhhcCCCHHHHHHHHHhhc
Q 003331 290 LLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNLG------IDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l~------~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++.+++++++.+++ ++|.++++|.++|.|||.+++|...|+ ++...++.++|+..|+.++.+..
T Consensus 27 i~~~l~~ila~~l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~ 99 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHR 99 (103)
Confidence 778889999999887 578999999999999999999988763 67778999999999999987654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.046 Score=56.68 Aligned_cols=184 Identities=11% Similarity=0.076 Sum_probs=97.1
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
..++++. ...|+.+++.+............ .....++..++.||+.. ..+.|+.+++..+........+......++
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~-~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 122 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYTLLLNNLEN-AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 122 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred ceeEeec-ccceEEEeCCCCeeEEeecCCCc-eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEE
Confidence 3455554 45588888765544332222122 23344555567777664 457899999876543322222212223455
Q ss_pred eecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecC
Q 003331 608 IDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+... .+.|.+++++...-..+....... ....++.+.++.+|+.... +.|+.++.+|.....+-.
T Consensus 123 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~--P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~- 199 (349)
T 3v64_C 123 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEK--PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD- 199 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-
T ss_pred EecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCC--cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-
Confidence 6655678877654 567888887742111221111112 2345566567888877643 678888855543322211
Q ss_pred CceeecCccccc-CCCeEEEEe-eCCeEEEEeCCC
Q 003331 685 GPIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 685 ~~~~~~~~~~~~-~~~~i~~~t-~~g~l~~~d~~t 717 (829)
..+.....+..+ .++.||+.. ..+.|+.+|.+.
T Consensus 200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 111111112233 367788774 456788888653
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0019 Score=69.25 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=93.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcC----------Cc-e---------eeceEEe---eCC--cEEEEEEe---
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLE----------GR-I---------ECSAAVL---ADF--SQVVVGCY--- 536 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~----------~~-~---------~~~~~~~---~~~--~~v~vg~~--- 536 (829)
....||+|+.||.|++||.. |+++|.|-.. .. . ..++.+. .++ ..+.+++.
T Consensus 84 R~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~G 162 (570)
T 3hx6_A 84 RAPRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAG 162 (570)
T ss_dssp CCCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTS
T ss_pred CccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCC
Confidence 45789999999999999987 9999976311 00 0 0112221 122 24555553
Q ss_pred CCEEEEEEcCC---CcEEEEEecCC-----eeeeeeeeec---CCCEEEEecc------CCeEEEEEcCCCeEEEeeccC
Q 003331 537 KGKIYFLDYLT---GDIYWTFQTCG-----EVKCQPVVDA---PRQLIWCGSH------DHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 537 dg~l~~~d~~t---G~~~w~~~~~~-----~~~~~~~~~~---~~~~i~~gs~------~g~l~~~d~~tg~~~w~~~~~ 599 (829)
...+|++|..+ .+++|++...+ ...+.|.+.. .+-.+++|+. ...||++|+++|+++|++...
T Consensus 163 G~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~ 242 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVT 242 (570)
T ss_dssp CSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEEC
T ss_pred CcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecC
Confidence 24799999765 78999997322 2344444432 2234555532 347999999999999998764
Q ss_pred Cc-----ccccceee-cC----CCEEEEEecCCeEEEEEccC
Q 003331 600 GS-----IFGSPAID-EV----HDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 600 ~~-----~~~~~~~~-~~----~~~l~v~t~~g~l~~~~~~~ 631 (829)
+. ..+.+.+. .+ -+.+|++...|.|+++|+..
T Consensus 243 ~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~ 284 (570)
T 3hx6_A 243 GRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIA 284 (570)
T ss_dssp CSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSC
T ss_pred CCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCC
Confidence 31 22334332 22 25799999999999999876
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.074 Score=53.91 Aligned_cols=207 Identities=12% Similarity=0.105 Sum_probs=100.4
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC----CEEEEEEcCCCcEEEEEec--CCeee-eeeee
Q 003331 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK----GKIYFLDYLTGDIYWTFQT--CGEVK-CQPVV 566 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d----g~l~~~d~~tG~~~w~~~~--~~~~~-~~~~~ 566 (829)
..+++||+.+++ |..-. +..-....++..++..+++|..+ ..+++||+.+++ |+... +.... ...+.
T Consensus 24 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~ 99 (306)
T 3ii7_A 24 QSCRYFNPKDYS--WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS--WYSKLGPPTPRDSLAACA 99 (306)
T ss_dssp TSEEEEETTTTE--EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE--EEEEECCSSCCBSCEEEE
T ss_pred ceEEEecCCCCC--EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe--EEECCCCCccccceeEEE
Confidence 469999998876 76422 11111122233344444455543 679999988774 54322 11111 11222
Q ss_pred ecCCCEEE-EeccC------CeEEEEEcCCCeEEEeeccC--Cccc-ccceeecCCCEEEEEec----------CCeEEE
Q 003331 567 DAPRQLIW-CGSHD------HNLYALDFRNYRCVYKLPCG--GSIF-GSPAIDEVHDVLYVAST----------SGRLTA 626 (829)
Q Consensus 567 ~~~~~~i~-~gs~~------g~l~~~d~~tg~~~w~~~~~--~~~~-~~~~~~~~~~~l~v~t~----------~g~l~~ 626 (829)
. ++.|| +|+.+ ..+++||+.+++ |+.... .... ...+.. ++.||+... ...++.
T Consensus 100 ~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ 173 (306)
T 3ii7_A 100 A--EGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEV 173 (306)
T ss_dssp E--TTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEE
T ss_pred E--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEE
Confidence 2 24455 45443 458999998875 654321 1111 122233 367766432 345889
Q ss_pred EEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEE-ee-----CCeEEEEc-CCCCEEEEeecCCceeecCcccccC
Q 003331 627 ISVKALPFHTLWLHELEV--PAFASLCITSANRHVICC-LV-----DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFAL 697 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~-~~-----~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~ 697 (829)
||+.+ . .|..-... +........ .++.+|+. .. ...+.+|| .++ .|+.-...+.-.........
T Consensus 174 yd~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 174 YDPAT--E--TWTELCPMIEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLN--EWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp EETTT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTT--EEEECCCCSCCBSCCEEEEE
T ss_pred eCCCC--C--eEEECCCccchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCC--cEEECCCCCCCccceeEEEE
Confidence 99887 3 46543222 221222222 24455543 32 24578888 554 36643221110000011112
Q ss_pred CCeEEEE-eeC-----CeEEEEeCCCCc
Q 003331 698 PSQVLIC-SRN-----GSIYSFEQESGN 719 (829)
Q Consensus 698 ~~~i~~~-t~~-----g~l~~~d~~tG~ 719 (829)
++.||+. ..+ ..+++||+++.+
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 4556544 322 468888887764
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.42 E-value=0.06 Score=54.90 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=117.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcE-EEEEecCCeeeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDI-YWTFQTCGEVKCQP 564 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~-~w~~~~~~~~~~~~ 564 (829)
.|+++. .+.|..+|+.+..........+ .......+...++.||... ..+.|+.++..++.. .+....+-......
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344444 3568889987653111111111 1111333444445666554 456788888766532 12222111112223
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEee-
Q 003331 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLH- 640 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~- 640 (829)
+++..++.||+.. ..+.|..++...................++++..++.+|++.. .+.|+.++.+ |+.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---G~~~~~~~ 161 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD---GSSRFIII 161 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT---SCSCEEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC---CCCeEEEE
Confidence 4554456676653 4567888886643222222112122234556666688888774 4789999877 3322111
Q ss_pred ccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEE-eeCCeEEEEeCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLIC-SRNGSIYSFEQES 717 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~-t~~g~l~~~d~~t 717 (829)
..........++..+++.+|+... .+.|..+|.+|...-.+-... ...|. +..+ ++.+|.. ...+.|..+++.+
T Consensus 162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~glav~-~~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLF-EDILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC--CSCEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC--CCCceEEEEe-CCEEEEEecCCCeEEEEECCC
Confidence 111111234566666788888754 567888884443221111100 11111 1123 3455554 4567899999988
Q ss_pred CcEEEEEe
Q 003331 718 GNLLWEYS 725 (829)
Q Consensus 718 G~~~w~~~ 725 (829)
|+..-.+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 87654443
|
| >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00015 Score=72.96 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc-----CCcchhhhcCCCHHHHHHHHH
Q 003331 292 QVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL-----GIDMRLIYNFPTPSKLEIALL 351 (829)
Q Consensus 292 ~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l-----~~~~~~~~~~pt~~~la~~l~ 351 (829)
+++++.|++.| . +.+..+++|+++|+||+.+|+|+.++ ++++..+|++||+..++.+|.
T Consensus 218 dwlr~~va~~L-~~~~~i~~~~nL~~lGlDSi~~m~l~~~~~~~g~~~~~~~l~~~ptl~~~~~~l~ 283 (287)
T 2fq1_A 218 AALREVILPLL-DESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKLLS 283 (287)
T ss_dssp HHHHHHHGGGC-CCSSCCCTTSCSGGGTCCTTHHHHHHHHHTTTCTTCCHHHHHTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHhhcCCCCCHHHhCccHHHHHHHHHHHHHcCCCCCHHHHHhCccHHHHHHHHH
Confidence 56777888888 5 46899999999999999999999876 478889999999999999987
|
| >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00024 Score=55.55 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHhcccCcc--eeccCCCccccC-CChHHHHHHHHHcC------Ccchhhh--cCCCHHHHHHHHHhh
Q 003331 288 SDLLQVIRKAFGHALMVE--EVLHHDNFFTMG-GNSIAAAHVAHNLG------IDMRLIY--NFPTPSKLEIALLEK 353 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~--~i~~~~~Ff~lG-gdSl~a~~l~~~l~------~~~~~~~--~~pt~~~la~~l~~~ 353 (829)
.++.+.+++++++.++.+ .+.++++|+++| .|||.+++|...|+ ++...+. .++|+..++.++.++
T Consensus 3 ~~i~~~i~~il~~~~~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~ 79 (80)
T 1dv5_A 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHc
Confidence 356778888888888764 568899999999 99999999998763 5666666 899999999998764
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0076 Score=64.71 Aligned_cols=145 Identities=18% Similarity=0.241 Sum_probs=92.6
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCC----------eee----------eeeeeec---C--CCEEEEecc---C
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG----------EVK----------CQPVVDA---P--RQLIWCGSH---D 579 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~----------~~~----------~~~~~~~---~--~~~i~~gs~---~ 579 (829)
...||+|+.||.|++||.. |+++|.|-... ... ..|.+.+ + -..+++++. .
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3589999999999999977 99999763210 000 1122211 1 123444432 2
Q ss_pred CeEEEEEcCC---CeEEEeeccC-----Ccccccceeec--CCC-EEEEEec------CCeEEEEEccCCCceEEEeecc
Q 003331 580 HNLYALDFRN---YRCVYKLPCG-----GSIFGSPAIDE--VHD-VLYVAST------SGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 580 g~l~~~d~~t---g~~~w~~~~~-----~~~~~~~~~~~--~~~-~l~v~t~------~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
..+|++|+.+ .+++|++... +..++.|.+.. ++. .+++++. ...||++|+++ |+.+|++..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~t--G~li~~i~~ 241 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMET--GAITRKLEV 241 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTT--CCEEEEEEE
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCC--CceEEEEec
Confidence 4699999765 7899998742 34566676543 223 3444442 34799999998 999998865
Q ss_pred CC-----cceeeeeeeec-----CCEEEEEeeCCeEEEEc-CCC
Q 003331 643 EV-----PAFASLCITSA-----NRHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 643 ~~-----~~~~s~~~~~~-----~~~l~~~~~~g~i~~~d-~~g 675 (829)
.. ...+++.+... -+.+|+|...|.|+.+| .+.
T Consensus 242 ~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~ 285 (570)
T 3hx6_A 242 TGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAG 285 (570)
T ss_dssp CCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCS
T ss_pred CCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCC
Confidence 42 22344444432 25899999999999999 543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.049 Score=55.57 Aligned_cols=176 Identities=12% Similarity=0.154 Sum_probs=87.4
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEE-cCC--ceeeceEEeeCCcEEEEEEe----C-------CEEEEEEcCCCcEEEEE
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIK-LEG--RIECSAAVLADFSQVVVGCY----K-------GKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~-~~~--~~~~~~~~~~~~~~v~vg~~----d-------g~l~~~d~~tG~~~w~~ 554 (829)
+++|. ..+.+||+.+++ |... .+. .-....++..++..+++|.. + ..+++||+.+++ |+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~ 81 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLG 81 (315)
T ss_dssp EEEET--TEEEEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEE
T ss_pred EEEcC--CceEEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEE
Confidence 44455 459999999887 7642 211 11112233334455556653 1 238899988764 653
Q ss_pred ec--CCeee-eeeeeecCCCEEEE-eccC--------CeEEEEEcCCCeEEEeeccC--Ccccc-cceeecCCCEEEEEe
Q 003331 555 QT--CGEVK-CQPVVDAPRQLIWC-GSHD--------HNLYALDFRNYRCVYKLPCG--GSIFG-SPAIDEVHDVLYVAS 619 (829)
Q Consensus 555 ~~--~~~~~-~~~~~~~~~~~i~~-gs~~--------g~l~~~d~~tg~~~w~~~~~--~~~~~-~~~~~~~~~~l~v~t 619 (829)
-. +.... .+.+.. ++.||+ |+.+ ..+++||+.+++ |+.... ..... +.+.. ++.||+..
T Consensus 82 ~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~G 155 (315)
T 4asc_A 82 MPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLSH--MDLVYVIG 155 (315)
T ss_dssp CCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEEE--CCEEEEEe
Confidence 21 11111 112222 345554 4421 358999998875 764322 11111 22233 36666543
Q ss_pred -c------CCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCC-----eEEEEc-CCCCEEEEee
Q 003331 620 -T------SGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDG-----HVVALD-SSGSIIWRCR 682 (829)
Q Consensus 620 -~------~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g-----~i~~~d-~~g~~~w~~~ 682 (829)
. ...+++||+.+ . .|+.-... +.....+...++..+++|..++ .+.+|| .+. .|+.-
T Consensus 156 G~~~~~~~~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKK--F--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp CBCTTSCBCCCEEEEETTT--T--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEE
T ss_pred CCCCCCcccceEEEEeCCC--C--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC--eEEEC
Confidence 2 14589999886 3 46653322 2222222233444444454432 478888 554 46643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.042 Score=55.59 Aligned_cols=209 Identities=13% Similarity=0.119 Sum_probs=100.0
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCc-EEEEEecC--Cee-eeee
Q 003331 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGD-IYWTFQTC--GEV-KCQP 564 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~-~~w~~~~~--~~~-~~~~ 564 (829)
..+++||+.+++ |..-. +.......++..++..+++|..+ ..+++||..+++ ..|+.... ... ....
T Consensus 31 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQE--WSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCe--EEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 368999998775 76422 21111122333444444455543 469999988876 34654321 111 1112
Q ss_pred eeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeec--cCCccc-ccceeecCCCEEEEEe-c-----CCeEEEEEc
Q 003331 565 VVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLP--CGGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTAISV 629 (829)
Q Consensus 565 ~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~~~~ 629 (829)
+.. ++.||+ |+.+ ..+++||+.+++ |+.. ...... .+.+.. ++.||+.+ . ...++.||+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeC
Confidence 222 245554 4432 368999998875 5432 121111 122233 36666643 2 245889998
Q ss_pred cCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee-----CCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCe
Q 003331 630 KALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV-----DGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 700 (829)
Q Consensus 630 ~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~-----~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (829)
.+ . .|+.-.. .+........ .++.+|+ |.. ...+++|| .+. .|+.-...+.-.........++.
T Consensus 183 ~~--~--~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~ 255 (301)
T 2vpj_A 183 HT--G--HWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTD--SWTTVTSMTTPRCYVGATVLRGR 255 (301)
T ss_dssp TT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTE
T ss_pred CC--C--cEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCC--cEEECCCCCCcccceeEEEECCE
Confidence 86 3 4654322 2221122222 2445554 433 24588888 554 35543211110000011122456
Q ss_pred EEEEe-eC-----CeEEEEeCCCCc
Q 003331 701 VLICS-RN-----GSIYSFEQESGN 719 (829)
Q Consensus 701 i~~~t-~~-----g~l~~~d~~tG~ 719 (829)
||+.. .+ ..+++||+++.+
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEEcCcCCCcccccEEEEcCCCCe
Confidence 66543 22 357788877654
|
| >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00021 Score=57.23 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHhccc---Cc--ceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 288 SDLLQVIRKAFGHAL---MV--EEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l---~~--~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.++.+.+++++++.+ ++ +++.++.+| -++|.|||.+++|...| .++...+..++|+..|+.++.++.
T Consensus 7 ~~i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 85 (88)
T 2l4b_A 7 EEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASKS 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHHHHHHhh
Confidence 467788888888888 54 568899999 59999999999998765 366778899999999999998754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.023 Score=58.86 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=52.1
Q ss_pred cceEEeeCCCeEEEEecC------CCcEEEEECCCCcEEEEEEcCCc------eeeceEEeeCCcEEEEEEe----CCEE
Q 003331 477 SPLVVLKDSDIYLFVGSH------SHKFICADAKRSSVLWEIKLEGR------IECSAAVLADFSQVVVGCY----KGKI 540 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~------~g~l~~~d~~tg~~~w~~~~~~~------~~~~~~~~~~~~~v~vg~~----dg~l 540 (829)
+|.-+.-|.+++||+... ++.|+.||+.+|+++..+.++.. ......+..+++.+|+... ++.|
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i 147 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL 147 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence 444333456688998764 36899999999997766665421 1134456555678888764 6799
Q ss_pred EEEEcCCCcEEE
Q 003331 541 YFLDYLTGDIYW 552 (829)
Q Consensus 541 ~~~d~~tG~~~w 552 (829)
+.||..+|+...
T Consensus 148 ~v~d~~~g~~~r 159 (343)
T 2qe8_A 148 IRVDLQTGLAAR 159 (343)
T ss_dssp EEEETTTCCEEE
T ss_pred EEEECCCCCEEE
Confidence 999998887643
|
| >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00016 Score=59.53 Aligned_cols=66 Identities=11% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc----C--Ccchh------h-----hcCCCHHHHHH
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL----G--IDMRL------I-----YNFPTPSKLEI 348 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l----~--~~~~~------~-----~~~pt~~~la~ 348 (829)
++.+.+++++++.+++ .++.++.+|+ ++|.|||.+++|+..| + ++... + +.+||+..|+.
T Consensus 3 ~i~~~v~~ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 3 STFDRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp CHHHHHHHHHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 4567788888888876 5688888885 9999999999998765 3 44444 4 55566999999
Q ss_pred HHHhhc
Q 003331 349 ALLEKK 354 (829)
Q Consensus 349 ~l~~~~ 354 (829)
++.+..
T Consensus 83 ~i~~~~ 88 (101)
T 2kw2_A 83 RIDELV 88 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.21 E-value=0.13 Score=54.35 Aligned_cols=228 Identities=9% Similarity=0.009 Sum_probs=112.4
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCe----EEEeeccCCcccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYR----CVYKLPCGGSIFG 604 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~----~~w~~~~~~~~~~ 604 (829)
.+++.. ...|..+|+.+............ .....++..++.||+.. ..+.|+.+++.... ..-..........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~-~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSC-EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCc-ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344443 57788888876665544332222 23344555567777664 35678888876421 1111111111122
Q ss_pred cceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEe
Q 003331 605 SPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRC 681 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~ 681 (829)
.++++..++.||+.. ..+.|.+++++. ....-............++.+.++.+|+... .+.|+.++.+|.....+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTT--CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCC--CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 345554457777665 356788888774 2221111111111234556666788888764 36788888555433222
Q ss_pred ecCCceeecCccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc
Q 003331 682 RTGGPIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 759 (829)
Q Consensus 682 ~~~~~~~~~~~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 759 (829)
-.. .+.....+..+ .++.||+.. ..+.|..+|.+ |.....+.........|... . ...+..+|+...
T Consensus 241 ~~~-~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl---~------v~~~~lywtd~~ 309 (400)
T 3p5b_L 241 VTE-NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSL---A------VFEDKVFWTDII 309 (400)
T ss_dssp ECS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCCEEEEECSSTTSSEEEE---E------EETTEEEEEESS
T ss_pred EEC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC-CCccEEEEeCCCCCCCCEEE---E------EeCCEEEEecCC
Confidence 111 11011112223 356788774 45789999965 44333332111100111100 0 011455666666
Q ss_pred CCcEEEEEeecCc
Q 003331 760 SGSIHILRVNLDV 772 (829)
Q Consensus 760 ~G~l~~~d~~~~~ 772 (829)
.+.|+.+|..+|.
T Consensus 310 ~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 310 NEAIFSANRLTGS 322 (400)
T ss_dssp SCSEEEEESSSCC
T ss_pred CCeEEEEEcCCCC
Confidence 7789999876653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.032 Score=59.16 Aligned_cols=188 Identities=14% Similarity=0.209 Sum_probs=97.8
Q ss_pred eCCcEEEEEEeCCEEEEEEcCCCcEEEEEe---cCCeeeeeeeeec-CCCEEEEeccCC----eEEEEEcCCCeEEEeec
Q 003331 526 ADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ---TCGEVKCQPVVDA-PRQLIWCGSHDH----NLYALDFRNYRCVYKLP 597 (829)
Q Consensus 526 ~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~---~~~~~~~~~~~~~-~~~~i~~gs~~g----~l~~~d~~tg~~~w~~~ 597 (829)
+..+.||+|+..| ++.++..++...|+.. ..+......++++ +.+.+|+++..| .|+..+ ..| ..|+..
T Consensus 20 d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G-~tW~~~ 96 (394)
T 3b7f_A 20 SGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGG-GNWTEA 96 (394)
T ss_dssp CSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STT-SCCEEC
T ss_pred CCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCC-CCceEC
Confidence 3356899999654 8888765544467532 2233333344443 368899998776 677653 223 345432
Q ss_pred cCC-----c----------ccccceeec-C-CCEEEEEecCCeEEEEEccCCCceEEEeeccC-----------------
Q 003331 598 CGG-----S----------IFGSPAIDE-V-HDVLYVASTSGRLTAISVKALPFHTLWLHELE----------------- 643 (829)
Q Consensus 598 ~~~-----~----------~~~~~~~~~-~-~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~----------------- 643 (829)
... . .+...+++. + .+.+|+++..+.|+..+ + +...|+....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~--D--gG~tW~~~~~~~~~p~~~~~~~~~~~g 172 (394)
T 3b7f_A 97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST--D--HGASWEPVAGFNDHPMRRAWTGGEQDG 172 (394)
T ss_dssp SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES--S--TTSBCEECHHHHTCTTHHHHHCCC---
T ss_pred CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc--C--CCCCeEECcCccCCccccccccccccC
Confidence 110 0 111233442 2 58899998888787653 2 3334653211
Q ss_pred ---Ccceeeeeeee-cCCEEEEEeeCCeEEEEcCCCCEEEEeecCCce---e---------ecCccccc--CCCeEEEEe
Q 003331 644 ---VPAFASLCITS-ANRHVICCLVDGHVVALDSSGSIIWRCRTGGPI---F---------AGPCTSFA--LPSQVLICS 705 (829)
Q Consensus 644 ---~~~~~s~~~~~-~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~---~---------~~~~~~~~--~~~~i~~~t 705 (829)
...+..+.+.+ +.+.+|+++..++|+..+..|+ .|+....... + ....+... ..+.||+++
T Consensus 173 ~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~-tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 173 TPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGT-DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp -CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTS-SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred CCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCC-CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 01112333332 3578999988788877764443 4654321100 0 00111222 237899987
Q ss_pred eCCeEEEEeCCCCcEEEEE
Q 003331 706 RNGSIYSFEQESGNLLWEY 724 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~ 724 (829)
.. +|+..+ ..| ..|+.
T Consensus 252 ~~-gl~~s~-D~G-~tW~~ 267 (394)
T 3b7f_A 252 HC-GIYRMD-RRE-GVWKR 267 (394)
T ss_dssp TT-EEEEEE-TTT-TEEEC
T ss_pred CC-eEEEeC-CCC-CcceE
Confidence 54 577765 333 35653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.041 Score=56.63 Aligned_cols=181 Identities=8% Similarity=0.054 Sum_probs=94.4
Q ss_pred eCCEEEEEEcCC--CcEE-EEEecC--C----eeeeeeeee--cCCCEEEEeccCC-----eEEEEEcCCCeEEEeeccC
Q 003331 536 YKGKIYFLDYLT--GDIY-WTFQTC--G----EVKCQPVVD--APRQLIWCGSHDH-----NLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 536 ~dg~l~~~d~~t--G~~~-w~~~~~--~----~~~~~~~~~--~~~~~i~~gs~~g-----~l~~~d~~tg~~~w~~~~~ 599 (829)
.+|.|+.+|.++ ++.. ...... + ......+.. ++..+||+..+.. .++.+|..++...+.....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 478899999763 4432 222210 0 112222222 2233577765432 3777887777665554443
Q ss_pred Cccc---ccceeecCCCEEEEEec------------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE
Q 003331 600 GSIF---GSPAIDEVHDVLYVAST------------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 600 ~~~~---~~~~~~~~~~~l~v~t~------------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
+... ....+++ ++.+|+++. .|.|+.++... -+.+- .. -......+++++++.
T Consensus 161 g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~--~~~~~-~~--l~~pNGia~spDg~~ 234 (355)
T 3sre_A 161 HKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVA-EG--FDFANGINISPDGKY 234 (355)
T ss_dssp CTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC--CEEEE-EE--ESSEEEEEECTTSSE
T ss_pred cCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe--EEEee-cC--CcccCcceECCCCCE
Confidence 3322 2334444 578888753 25677776532 12111 11 111245677778888
Q ss_pred EEEEe-eCCeEEEEc--CCCCEEEE--eecCCceeecCcccccC-CCeEEEEee-C-CeEEEEeCC--CCcEEEEEe
Q 003331 659 VICCL-VDGHVVALD--SSGSIIWR--CRTGGPIFAGPCTSFAL-PSQVLICSR-N-GSIYSFEQE--SGNLLWEYS 725 (829)
Q Consensus 659 l~~~~-~~g~i~~~d--~~g~~~w~--~~~~~~~~~~~~~~~~~-~~~i~~~t~-~-g~l~~~d~~--tG~~~w~~~ 725 (829)
+|++. ..+.|++|+ .+|++.-. +..++.. .-+..+. +|.+|+++. + +.|.++|++ .+..+++..
T Consensus 235 lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P---DGi~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 235 VYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV---DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE---EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC---ceEEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 98875 467899988 35654321 1111111 1123556 489999764 4 356666765 355666655
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.17 E-value=0.092 Score=53.51 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=109.9
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeE-EEeeccCCcccccce
Q 003331 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRC-VYKLPCGGSIFGSPA 607 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~ 607 (829)
++++. ...|..+|+.+..........+ .......++..++.||... ..+.|+.+++.++.. .+....+......++
T Consensus 7 ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 7 LLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 44443 4568888876653111111111 1112223444456666553 456788888766531 121111111222345
Q ss_pred eecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEeecC
Q 003331 608 IDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~~~~ 684 (829)
++..++.||+.. ..+.|..++++...-+.+ ...........++.+.++.+|+... .+.|+.++.+|......-..
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l--~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEE--EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 564567777764 356788888774111122 1111111234556666788888764 47888888555433222111
Q ss_pred CceeecCccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEec-CCccccccccccccccccccccCCCcEEEEEccCC
Q 003331 685 GPIFAGPCTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSG 761 (829)
Q Consensus 685 ~~~~~~~~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G 761 (829)
.+.....+..+ .++.||+.. ..+.|+++|.+ |...-.+-. .........++ .+..+|+-...+
T Consensus 164 -~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~~~~~~~~P~glav~------------~~~lywtd~~~~ 229 (318)
T 3sov_A 164 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLF------------EDILYWTDWSTH 229 (318)
T ss_dssp -SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSCCSCEEEEEEE------------TTEEEEEETTTT
T ss_pred -CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC-CCceEEEecCCCCCceEEEEe------------CCEEEEEecCCC
Confidence 11111112233 356788774 45788998875 332222111 00000001111 255666666678
Q ss_pred cEEEEEeecCc
Q 003331 762 SIHILRVNLDV 772 (829)
Q Consensus 762 ~l~~~d~~~~~ 772 (829)
.|+.++..+|.
T Consensus 230 ~V~~~~~~~G~ 240 (318)
T 3sov_A 230 SILACNKYTGE 240 (318)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 89999886653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.11 Score=52.66 Aligned_cols=216 Identities=11% Similarity=0.089 Sum_probs=101.8
Q ss_pred EEEecc--CCeEEEEEcCCCeEEEeeccC--Cc-ccccceeecCCCEEEEEe-c----CCeEEEEEccCCCceEEEeecc
Q 003331 573 IWCGSH--DHNLYALDFRNYRCVYKLPCG--GS-IFGSPAIDEVHDVLYVAS-T----SGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 573 i~~gs~--~g~l~~~d~~tg~~~w~~~~~--~~-~~~~~~~~~~~~~l~v~t-~----~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
+++|+. ...+++||+.+++ |..-.. .. ...+.+.. ++.||+.. . ...++.||+.+ . .|..-.
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~--~--~W~~~~ 86 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVK--D--SWYSKL 86 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTT--T--EEEEEE
T ss_pred EEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCC--C--eEEECC
Confidence 334543 3569999999875 654221 11 11122233 35666543 2 25688999887 3 455432
Q ss_pred C--CcceeeeeeeecCCEEEE-EeeC------CeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEee-----
Q 003331 643 E--VPAFASLCITSANRHVIC-CLVD------GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICSR----- 706 (829)
Q Consensus 643 ~--~~~~~s~~~~~~~~~l~~-~~~~------g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t~----- 706 (829)
. .+........ .++.+|+ |..+ ..+++|| .+. .|+.....+. ..... ....++.||+...
T Consensus 87 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 87 GPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHG-MVEANGLIYVCGGSLGNN 162 (306)
T ss_dssp CCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCE-EEEETTEEEEECCEESCT
T ss_pred CCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeE-EEEECCEEEEECCCCCCC
Confidence 2 2222222222 2455554 4332 3578888 544 3654322111 11111 1123567776432
Q ss_pred -----CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEE-EEccC-----CcEEEEEeecCcccc
Q 003331 707 -----NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVC-ICTSS-----GSIHILRVNLDVTGK 775 (829)
Q Consensus 707 -----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-----G~l~~~d~~~~~~~~ 775 (829)
...+++||+.+. .|+...+-+... .. .+....++.+| +|..+ ..+++||..++
T Consensus 163 ~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r---~~-------~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~---- 226 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATE--TWTELCPMIEAR---KN-------HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN---- 226 (306)
T ss_dssp TTCEECCCEEEEETTTT--EEEEECCCSSCC---BS-------CEEEEETTEEEEECCEETTEEBCCEEEEETTTT----
T ss_pred CcccccceEEEeCCCCC--eEEECCCccchh---hc-------ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC----
Confidence 345889998876 465432211100 00 00011133344 33322 35778877643
Q ss_pred ccccccccceeeeee-ccCCcc-cccceEECCEEEEe-ee-----CCeEEEEecccccc
Q 003331 776 ENQSKDHMVQEFAKL-ELQGDI-FSSPVMIGGRVFVG-CR-----DDYIYCIALETQHL 826 (829)
Q Consensus 776 ~~~~~~~~~~~~~~~-~~~~~~-~~s~~~~~~~l~vg-~~-----~g~l~~~d~~tg~~ 826 (829)
.|... .++... ..+.++.++.||+. .. .+.+++||+++.+.
T Consensus 227 ----------~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 227 ----------EWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp ----------EEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred ----------cEEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 22221 122221 22344567877774 32 35789999988764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.03 Score=60.00 Aligned_cols=189 Identities=7% Similarity=0.037 Sum_probs=102.5
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCC-----eEEEEEcCCCeEEEeeccCCcc
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDH-----NLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g-----~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
++.||+....+.|+++|+.+|++..... .........++.+++ ||+....+ .++.++...+............
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~ 229 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARG 229 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSS
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeeccccccccCC
Confidence 5789998766889999988887754332 222223344555455 88776532 3566654433110000001111
Q ss_pred cccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEee-ccC-CcceeeeeeeecCCEEEEEee-CCeEEEEc-C--CC
Q 003331 603 FGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH-ELE-VPAFASLCITSANRHVICCLV-DGHVVALD-S--SG 675 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~-~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~--~g 675 (829)
....+++..++.||++.. ++.|+.+++++ |...... ... .+.....++.++++.+|+... +..|..++ . ++
T Consensus 230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~--g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~ 307 (433)
T 4hw6_A 230 AKTCAVHPQNGKIYYTRYHHAMISSYDPAT--GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETG 307 (433)
T ss_dssp BCCCEECTTTCCEEECBTTCSEEEEECTTT--CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTC
T ss_pred CCEEEEeCCCCeEEEEECCCCEEEEEECCC--CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCc
Confidence 233456655688888764 56799999886 6542222 111 111123566667777888764 46788876 2 34
Q ss_pred CEE----EEeecCC----------ceeecCc-ccc---------cCCCeEEEEee-CCeEEEEeCCCCcEE
Q 003331 676 SII----WRCRTGG----------PIFAGPC-TSF---------ALPSQVLICSR-NGSIYSFEQESGNLL 721 (829)
Q Consensus 676 ~~~----w~~~~~~----------~~~~~~~-~~~---------~~~~~i~~~t~-~g~l~~~d~~tG~~~ 721 (829)
.+. +.-..+. ..+..|. +.. +.++.||++.. ++.|..+++ +|.+.
T Consensus 308 ~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 308 KLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp CBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred ccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 321 1111010 0112221 223 56778998854 567899985 67554
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.076 Score=57.09 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=107.9
Q ss_pred CCeEEEEecCC-CcEEEEECCCCcEEEEEEcCC-ce--eeceEE-------eeCCcEEEEEEeCC-------EEEEEEcC
Q 003331 485 SDIYLFVGSHS-HKFICADAKRSSVLWEIKLEG-RI--ECSAAV-------LADFSQVVVGCYKG-------KIYFLDYL 546 (829)
Q Consensus 485 ~~~~l~igs~~-g~l~~~d~~tg~~~w~~~~~~-~~--~~~~~~-------~~~~~~v~vg~~dg-------~l~~~d~~ 546 (829)
.++.||+.... +.|..+|++++++.-...... .. .....+ ..+++.+|+..+.+ .++.++..
T Consensus 150 ~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~ 229 (496)
T 3kya_A 150 NKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229 (496)
T ss_dssp EEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecC
Confidence 36789988764 679999999887764333322 11 234556 77777899988764 38888754
Q ss_pred C-CcEEE-----EEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcC-------CCeE-----------EEe-eccC-
Q 003331 547 T-GDIYW-----TFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFR-------NYRC-----------VYK-LPCG- 599 (829)
Q Consensus 547 t-G~~~w-----~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~-------tg~~-----------~w~-~~~~- 599 (829)
. |+..+ .+...... ...++++.++.||+... ++.|+.+|++ +|.. .-. +...
T Consensus 230 ~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~ 308 (496)
T 3kya_A 230 ADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD 308 (496)
T ss_dssp TTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS
T ss_pred CCCceeecccceeeccCCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC
Confidence 4 44321 11111111 12344555677887654 5679999988 6653 001 1222
Q ss_pred CcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceE----EEeeccCC----------cceeee---eeee-------
Q 003331 600 GSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHT----LWLHELEV----------PAFASL---CITS------- 654 (829)
Q Consensus 600 ~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~----~w~~~~~~----------~~~~s~---~~~~------- 654 (829)
......++++++++.+|++. ..+.|+.++.+...+.. .+--.... ..+..+ ....
T Consensus 309 ~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 309 PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 12223567777777788875 46788887765432321 11101000 011112 2222
Q ss_pred cCCEEEEEee-CCeEEEEcCCCCEE
Q 003331 655 ANRHVICCLV-DGHVVALDSSGSII 678 (829)
Q Consensus 655 ~~~~l~~~~~-~g~i~~~d~~g~~~ 678 (829)
.++.+|++.. +..|..++.+|.+.
T Consensus 389 ~~g~lyVaD~~N~rIr~i~~~G~v~ 413 (496)
T 3kya_A 389 EEYDFYFVDRLNFCVRKVTPEGIVS 413 (496)
T ss_dssp CCEEEEEEEGGGTEEEEECTTCBEE
T ss_pred CCCeEEEEECCCCEEEEEeCCCCEE
Confidence 3567888754 56788888777554
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.036 Score=57.89 Aligned_cols=135 Identities=16% Similarity=0.130 Sum_probs=90.0
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCc-----------EEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSS-----------VLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI 550 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~-----------~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~ 550 (829)
.....+.+++|+.++ +.++++++.+ ..+...++. + ....+ ++..++++ .++.|..||..+-..
T Consensus 45 is~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V-~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~ 118 (388)
T 1xip_A 45 ISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-V-IFVCF--HGDQVLVS-TRNALYSLDLEELSE 118 (388)
T ss_dssp EETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-E-EEEEE--ETTEEEEE-ESSEEEEEESSSTTC
T ss_pred EcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-e-eEEEE--CCCEEEEE-cCCcEEEEEchhhhc
Confidence 445678889988886 6668865443 235566665 3 45556 67899999 789999999876655
Q ss_pred EEEEecCC-eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEc
Q 003331 551 YWTFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISV 629 (829)
Q Consensus 551 ~w~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~ 629 (829)
.+...... .+.. .... ...+.+.+.+|.|+.||.++++..-. .....+.++++++ ++++..+|.+..|++
T Consensus 119 ~~~~~~~~~~v~~-i~~~--~p~~av~~~dG~L~v~dl~~~~~~~~----~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~ 189 (388)
T 1xip_A 119 FRTVTSFEKPVFQ-LKNV--NNTLVILNSVNDLSALDLRTKSTKQL----AQNVTSFDVTNSQ--LAVLLKDRSFQSFAW 189 (388)
T ss_dssp EEEEEECSSCEEE-EEEC--SSEEEEEETTSEEEEEETTTCCEEEE----EESEEEEEECSSE--EEEEETTSCEEEEEE
T ss_pred cCccceeecceee-EEec--CCCEEEEECCCCEEEEEccCCccccc----cCCceEEEEcCCc--eEEEEcCCcEEEEcC
Confidence 44433222 2221 1111 22477788999999999998876531 1234456666633 788999999999998
Q ss_pred cC
Q 003331 630 KA 631 (829)
Q Consensus 630 ~~ 631 (829)
+.
T Consensus 190 ~~ 191 (388)
T 1xip_A 190 RN 191 (388)
T ss_dssp ET
T ss_pred CC
Confidence 86
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0026 Score=72.92 Aligned_cols=232 Identities=12% Similarity=0.041 Sum_probs=116.7
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCC----CcEEEEEecCCeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLT----GDIYWTFQTCGEVKC 562 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~t----G~~~w~~~~~~~~~~ 562 (829)
.|++.. .+.|+.+++.+++........... ..+.+...++.||+... .+.|+.+++.+ ...............
T Consensus 379 ~ll~~~-~~~I~~id~~~~~~~~~~~~~~~p-~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 379 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNV-VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 456 (699)
T ss_dssp CBCCCC-TTC-CEECTTSCCEECCSCCCTTC-CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred eEEecC-ccceEEEeCCCCcceeeeccCcce-EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence 344433 346888888776654322211221 24455555667777643 46788888654 111111110100111
Q ss_pred eeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~ 639 (829)
..+++..++.||+.. ..+.|+.+++..................++++..++.||++... +.|++++++....+.+..
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~ 536 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 536 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence 223443456677653 45789999977554433332222222344566556788876642 678888766311111111
Q ss_pred eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCc-ccccCCCeEEEEe-eCCeEEEEeCC
Q 003331 640 HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPC-TSFALPSQVLICS-RNGSIYSFEQE 716 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~-~~~~~~~~i~~~t-~~g~l~~~d~~ 716 (829)
.... ....+++.+++++||+... .+.|..++.+|.....+......+..|. +..+ .+.||+.. ..+.|..+|+.
T Consensus 537 ~~l~--~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd-~~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 537 ENIQ--WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SSCS--SCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE-TTEEEEECSTTTCEEEEETT
T ss_pred CCCC--CccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEE-CCEEEEEeCCCCeEEEEEcc
Confidence 1111 1134556556777777653 5678889844433222211111112221 1223 34566554 56789999998
Q ss_pred CCcEEEEE
Q 003331 717 SGNLLWEY 724 (829)
Q Consensus 717 tG~~~w~~ 724 (829)
+|+.+-.+
T Consensus 614 ~G~~~~~i 621 (699)
T 1n7d_A 614 TGSDVNLL 621 (699)
T ss_dssp TEEEEECC
T ss_pred CCCceEEe
Confidence 99876544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.1 Score=53.14 Aligned_cols=172 Identities=9% Similarity=0.032 Sum_probs=84.0
Q ss_pred CEEEEEEcCCCcEEEEEec-CC--eeeeeeeeecCCCEEEEecc----C-------CeEEEEEcCCCeEEEeeccC--Cc
Q 003331 538 GKIYFLDYLTGDIYWTFQT-CG--EVKCQPVVDAPRQLIWCGSH----D-------HNLYALDFRNYRCVYKLPCG--GS 601 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~-~~--~~~~~~~~~~~~~~i~~gs~----~-------g~l~~~d~~tg~~~w~~~~~--~~ 601 (829)
..+++||+.+++ |.... +. ......++..++..+++|+. + ..+++||+.+++ |+.-.. ..
T Consensus 13 ~~~~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~ 88 (315)
T 4asc_A 13 EGAVAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMPPLPSP 88 (315)
T ss_dssp TEEEEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECCCBSSC
T ss_pred CceEEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECCCCCcc
Confidence 679999998876 76422 11 11122222333444555652 1 128899998875 643221 11
Q ss_pred c-cccceeecCCCEEEEEec---------CCeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee----
Q 003331 602 I-FGSPAIDEVHDVLYVAST---------SGRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV---- 664 (829)
Q Consensus 602 ~-~~~~~~~~~~~~l~v~t~---------~g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~---- 664 (829)
. ..+.+.. ++.||+... ...++.||+.+ . .|+.-.. .+........ .++.+|+ |..
T Consensus 89 r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 89 RCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS--F--KWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp EESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTT--T--EEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred hhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCC--C--cEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 1 1122233 366666432 13588999886 3 4765332 2222222222 3445554 433
Q ss_pred --CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEE-EeeCC-----eEEEEeCCCCcEEEEEe
Q 003331 665 --DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLI-CSRNG-----SIYSFEQESGNLLWEYS 725 (829)
Q Consensus 665 --~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~-~t~~g-----~l~~~d~~tG~~~w~~~ 725 (829)
...+.+|| .+. .|+.-...+. ...... ...++.||+ |..++ .+++||+.+. .|+..
T Consensus 162 ~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 162 KCLNKMCVYDPKKF--EWKELAPMQTARSLFGA-TVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp CBCCCEEEEETTTT--EEEECCCCSSCCBSCEE-EEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEE
T ss_pred cccceEEEEeCCCC--eEEECCCCCCchhceEE-EEECCEEEEEeccCCCCccceEEEEECCCC--eEEEC
Confidence 13578888 544 4654322111 111111 122556664 44332 5889998876 56644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.18 Score=50.92 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=99.4
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Cee-eeeee
Q 003331 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEV-KCQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~-~~~~~ 565 (829)
..+.+||+.+.+ |.... +.......++..++..+++|..+ ..+++||..+.+ |+.... ... ....+
T Consensus 30 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEER--WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred CcEEEEcCcCCc--EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCccccceEEE
Confidence 358999998775 76432 21111122233344344445433 358999987764 654321 111 11122
Q ss_pred eecCCCEEE-EeccC-----CeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEe-c-------CCeEEEEE
Q 003331 566 VDAPRQLIW-CGSHD-----HNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAS-T-------SGRLTAIS 628 (829)
Q Consensus 566 ~~~~~~~i~-~gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t-~-------~g~l~~~~ 628 (829)
+. + +.|| +|+.+ ..++.||+.+.+ |+... ..... ...+.. ++.||+.. . ...++.||
T Consensus 106 ~~-~-~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd 179 (302)
T 2xn4_A 106 VL-N-GLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYN 179 (302)
T ss_dssp EE-T-TEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEE
T ss_pred EE-C-CEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEe
Confidence 22 2 4444 45443 258899988765 54322 11111 122223 36676643 1 23588999
Q ss_pred ccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-EeeC-----CeEEEEc-CCCCEEEEeecCCce-eecCcccccCC
Q 003331 629 VKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLVD-----GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALP 698 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~~-----g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~ 698 (829)
+.+ . .|..-.. .+........ .++.+|+ |..+ ..+.+|| .++ .|+.-...+. ..... ....+
T Consensus 180 ~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~-~~~~~ 251 (302)
T 2xn4_A 180 ATT--N--EWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAG-VCAVN 251 (302)
T ss_dssp TTT--T--EEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCE-EEEET
T ss_pred CCC--C--cEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCe-EEEEC
Confidence 886 3 4654322 2222222222 2445554 4332 3588888 554 3654322111 01111 11225
Q ss_pred CeEEEEe-eC-----CeEEEEeCCCCcEEEEE
Q 003331 699 SQVLICS-RN-----GSIYSFEQESGNLLWEY 724 (829)
Q Consensus 699 ~~i~~~t-~~-----g~l~~~d~~tG~~~w~~ 724 (829)
+.||+.. .+ ..+++||+++.+ |+.
T Consensus 252 ~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 252 GLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred CEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 5666543 22 348888887764 654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.18 Score=51.44 Aligned_cols=169 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred cEEEEECCCCcEEEEE-EcC---CceeeceEEeeCCcEEEEEEe----CC-------EEEEEEcCCCcEEEEEec--CCe
Q 003331 497 KFICADAKRSSVLWEI-KLE---GRIECSAAVLADFSQVVVGCY----KG-------KIYFLDYLTGDIYWTFQT--CGE 559 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~-~~~---~~~~~~~~~~~~~~~v~vg~~----dg-------~l~~~d~~tG~~~w~~~~--~~~ 559 (829)
.+.+||+.+++ |.. ... .+.. ..++..++..+++|.. ++ .+++||..++ .|+... +..
T Consensus 25 ~~~~yd~~~~~--W~~~~~~~~~~r~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENE--CYLTALAEQIPRNH-SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLPPLPSA 99 (318)
T ss_dssp EEEEEETTTTE--EEEEEECTTSCSSE-EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECSCBSSC
T ss_pred ceEEECCCCCc--eecccCCccCCccc-eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECCCCCcc
Confidence 38999998886 654 222 1211 2233334444455552 11 2888998765 465321 111
Q ss_pred ee-eeeeeecCCCEEE-EeccC-------CeEEEEEcCCCeEEEeecc--CCcccc-cceeecCCCEEEEEec-------
Q 003331 560 VK-CQPVVDAPRQLIW-CGSHD-------HNLYALDFRNYRCVYKLPC--GGSIFG-SPAIDEVHDVLYVAST------- 620 (829)
Q Consensus 560 ~~-~~~~~~~~~~~i~-~gs~~-------g~l~~~d~~tg~~~w~~~~--~~~~~~-~~~~~~~~~~l~v~t~------- 620 (829)
.. ...+.. + +.|| +|+.+ ..+++||+.+.+ |+... ...... +.+.. ++.||+...
T Consensus 100 r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 100 RCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKC 173 (318)
T ss_dssp BCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCB
T ss_pred ccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCc
Confidence 11 112222 2 4444 45432 248899988764 65422 211111 22222 366766431
Q ss_pred CCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeC-----CeEEEEc-CCCCEEEEee
Q 003331 621 SGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVD-----GHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~-----g~i~~~d-~~g~~~w~~~ 682 (829)
...++.||+.+ . .|..-... +.........++..+++|..+ ..+.+|| .+.+ |+.-
T Consensus 174 ~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 237 (318)
T 2woz_A 174 TNRVFIYNPKK--G--DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVM 237 (318)
T ss_dssp CCCEEEEETTT--T--EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEEC
T ss_pred cceEEEEcCCC--C--EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe--EEEC
Confidence 23589999887 3 46543222 211112222233334444322 3467888 5543 6543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.23 Score=55.79 Aligned_cols=226 Identities=10% Similarity=-0.032 Sum_probs=121.6
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCC-ceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEG-RIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
..|+++ ..+.|..+|+.+.+........+ .......+...++.||+... ++.|+.+++..+........+-......
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 344444 44569999998765433333322 11224455555677777654 5789999875544332232221112234
Q ss_pred eeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeec
Q 003331 565 VVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~ 641 (829)
+++..++.||+.. ..+.|..+++......-........-..+++++..+.||++.+ .+.|+.++.+...-..+. .
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--~ 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--P 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--C
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--C
Confidence 4554556676654 3567888886543211111111112234567766789998774 467888887742112222 1
Q ss_pred cCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEee-cCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCC
Q 003331 642 LEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCR-TGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESG 718 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~-~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG 718 (829)
........++...++++|++.. .+.|..+|.+|...-.+. .....+.. .. .++.||+... .+.|+.+|+.+|
T Consensus 164 -~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~gl---av-~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGL---TQ-YQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEE---EE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEE---EE-ECCEEEEecCCCCEEEEEECCCC
Confidence 1122244566666788887754 567888883332211111 11111211 12 2467887764 688999998888
Q ss_pred cE
Q 003331 719 NL 720 (829)
Q Consensus 719 ~~ 720 (829)
+.
T Consensus 239 ~~ 240 (628)
T 4a0p_A 239 QN 240 (628)
T ss_dssp CS
T ss_pred Cc
Confidence 64
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.21 Score=53.34 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=140.8
Q ss_pred cccccccccccccc-----ccceEEeeC--CCeEEEEecCCCc----------------------------EEEEECCCC
Q 003331 462 IQELWKVHMESCVD-----ASPLVVLKD--SDIYLFVGSHSHK----------------------------FICADAKRS 506 (829)
Q Consensus 462 ~~~~W~~~~~~~~~-----~sp~v~~~d--~~~~l~igs~~g~----------------------------l~~~d~~tg 506 (829)
.+.+|+.+++..+. .++.|.--| ...-|++.+.+|. |.+||-.||
T Consensus 160 G~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG 239 (591)
T 2zux_A 160 GTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTG 239 (591)
T ss_dssp SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTC
T ss_pred CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCC
Confidence 56779988876543 234444222 2346777776654 899999999
Q ss_pred cEEEEEEcC-Ccee--------------eceEEee-CCc--EEEEEE---eCCEEEEEEcCCCcE--EEEEecCCee---
Q 003331 507 SVLWEIKLE-GRIE--------------CSAAVLA-DFS--QVVVGC---YKGKIYFLDYLTGDI--YWTFQTCGEV--- 560 (829)
Q Consensus 507 ~~~w~~~~~-~~~~--------------~~~~~~~-~~~--~v~vg~---~dg~l~~~d~~tG~~--~w~~~~~~~~--- 560 (829)
+.++++... .+-. ..+.+.. ++. .++++- ....|.+||..++++ +|++.....-
T Consensus 240 ~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~ 319 (591)
T 2zux_A 240 KELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEA 319 (591)
T ss_dssp CEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGG
T ss_pred CEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCccc
Confidence 999987753 1110 0122221 222 233332 123589999888874 8998764310
Q ss_pred -----eeeeeeec----CCCEEEEeccCCeEEEEEcCCCeEEEeeccCC-cccccceeecC--CCEEEEEecC----CeE
Q 003331 561 -----KCQPVVDA----PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEV--HDVLYVASTS----GRL 624 (829)
Q Consensus 561 -----~~~~~~~~----~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~--~~~l~v~t~~----g~l 624 (829)
...+.+.+ ...-|+.|+. ++| .+|+.+|....+. .....--++++ +-.+|....+ ...
T Consensus 320 ~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~ 393 (591)
T 2zux_A 320 FAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGL 393 (591)
T ss_dssp GSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSE
T ss_pred ccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCcc
Confidence 11222221 1223555542 556 7899999886532 11111112222 2246665543 135
Q ss_pred EEEEccCCCceEEEeeccCCcce--eeeeeeec--CCEEEEEeeCCeEEEEcCCCCEEEEeecCCceeecCcccccCC--
Q 003331 625 TAISVKALPFHTLWLHELEVPAF--ASLCITSA--NRHVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALP-- 698 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~~~~~--~s~~~~~~--~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~-- 698 (829)
...|..+ |+.+|........- ....+.++ +-.+|. ++ ..++.+|+.++.......-+. +.-+.+
T Consensus 394 ~~~dA~t--G~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~G~~i~~~~p~~~N~~---i~WdGDl~ 463 (591)
T 2zux_A 394 SFRDAAT--GKILWGVYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAKGVKIGSGVPSSTNFG---IWWDGDLL 463 (591)
T ss_dssp EEEETTT--CCEEEEECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTTSCBCSSCCCSCCSEE---ECCSSSSS
T ss_pred EEEECCC--CcEEEEcCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCCCCEecCCCCCCccee---EEECCCCc
Confidence 5578777 99999885432110 11111111 234554 23 345667777775311100010 111111
Q ss_pred CeEEEEeeCCeEEEEeCCCCc--EEEEEec---CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEee
Q 003331 699 SQVLICSRNGSIYSFEQESGN--LLWEYSV---GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 699 ~~i~~~t~~g~l~~~d~~tG~--~~w~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
..++- .+.|..|+..+++ .++++.. .+.....|+...++. ..- .+..|+-...+..|++|...
T Consensus 464 relld---~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~--GDw---REEvI~~t~D~~~LrIYtt~ 531 (591)
T 2zux_A 464 REQLD---SNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLL--GDW---REEVVWRTEDSSALRIYTTT 531 (591)
T ss_dssp CEEEE---TTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCS--SSS---SCEEEEEETTSSEEEEECCC
T ss_pred HhhhC---CceEEecccCCCceeEEEeecccccCCCCCCCEeeEEecc--ccC---eeEEEEEeCCCCeEEEEeCC
Confidence 12332 3478899987776 4455431 112223333322111 000 14455555566679998553
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.22 Score=51.09 Aligned_cols=193 Identities=12% Similarity=0.121 Sum_probs=97.7
Q ss_pred CCeEEEEec-------------CCCcEEEEECCC--CcEE-EEEEcC--C--ce-eeceEEee--CC-cEEEEEEeCC--
Q 003331 485 SDIYLFVGS-------------HSHKFICADAKR--SSVL-WEIKLE--G--RI-ECSAAVLA--DF-SQVVVGCYKG-- 538 (829)
Q Consensus 485 ~~~~l~igs-------------~~g~l~~~d~~t--g~~~-w~~~~~--~--~~-~~~~~~~~--~~-~~v~vg~~dg-- 538 (829)
.++.+|+++ .+|.|+.+|+++ ++.. +..... + .. --...+.. ++ .++|+.....
T Consensus 59 ~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~ 138 (355)
T 3sre_A 59 PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS 138 (355)
T ss_dssp TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC
T ss_pred CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC
Confidence 467888887 588999999873 4432 222210 1 01 00112222 22 3577764331
Q ss_pred ---EEEEEEcCCCcEEEEEecCCee--eeeeeeecCCCEEEEecc------------------CCeEEEEEcCCCeEEEe
Q 003331 539 ---KIYFLDYLTGDIYWTFQTCGEV--KCQPVVDAPRQLIWCGSH------------------DHNLYALDFRNYRCVYK 595 (829)
Q Consensus 539 ---~l~~~d~~tG~~~w~~~~~~~~--~~~~~~~~~~~~i~~gs~------------------~g~l~~~d~~tg~~~w~ 595 (829)
.|+.+|..++...+.....+.. ...-+..+.++.+|+++. .|.||.+|+.+-+.+
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~-- 216 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV-- 216 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEE--
T ss_pred CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEe--
Confidence 3777887666555443332211 112222234577877643 367888887422211
Q ss_pred eccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEE--eeccCCcceeeeeeeecCCEEEEEee-C-CeEEE
Q 003331 596 LPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLW--LHELEVPAFASLCITSANRHVICCLV-D-GHVVA 670 (829)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w--~~~~~~~~~~s~~~~~~~~~l~~~~~-~-g~i~~ 670 (829)
..+-...+.+++++++..+|++. ..+.|++|+.+. .|+..- .+... ...-...+..+++.+|++.. + +.+.+
T Consensus 217 -~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-~g~l~~~~~~~~~-g~PDGi~vD~e~G~lwva~~~~g~~v~~ 293 (355)
T 3sre_A 217 -AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA-NWTLTPLRVLSFD-TLVDNISVDPVTGDLWVGCHPNGMRIFF 293 (355)
T ss_dssp -EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-TSCEEEEEEEECS-SEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred -ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC-CCcEecCEEEeCC-CCCceEEEeCCCCcEEEEecCCceEEEE
Confidence 11112334566777778898875 467899999863 243211 11111 11122233322478999653 3 34555
Q ss_pred EcC---CCCEEEEee
Q 003331 671 LDS---SGSIIWRCR 682 (829)
Q Consensus 671 ~d~---~g~~~w~~~ 682 (829)
++. .+..++++.
T Consensus 294 ~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 294 YDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCTTSCCCEEEEEEE
T ss_pred ECCCCCCCCEEEEEE
Confidence 562 356666655
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.18 Score=53.97 Aligned_cols=146 Identities=9% Similarity=0.025 Sum_probs=83.3
Q ss_pred eEEee-CCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEcCCCeEE--
Q 003331 522 AAVLA-DFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDFRNYRCV-- 593 (829)
Q Consensus 522 ~~~~~-~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~~tg~~~-- 593 (829)
.++.+ +++.||+....+.|+.+|++++++.-... .........++.+++.||+.... ..++.++... ...
T Consensus 142 lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~~~~ 219 (430)
T 3tc9_A 142 LSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GFKVI 219 (430)
T ss_dssp EEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TSCSE
T ss_pred EEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ceeee
Confidence 44553 35789998776889999988776543332 22223445566666768887652 2456666433 221
Q ss_pred EeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCC-cceeeeeeeecCCEEEEEe-eCCeEEE
Q 003331 594 YKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICCL-VDGHVVA 670 (829)
Q Consensus 594 w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~~-~~g~i~~ 670 (829)
..+.. .......+++++++.||++. .++.|+.+++++ +.......... ......++.++++.+|+.. .++.|+.
T Consensus 220 ~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 220 TELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT--QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp EEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT--TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 11111 11122344565467788876 457899999886 44311112211 1123456666777777775 4577888
Q ss_pred Ec
Q 003331 671 LD 672 (829)
Q Consensus 671 ~d 672 (829)
++
T Consensus 297 ~~ 298 (430)
T 3tc9_A 297 SD 298 (430)
T ss_dssp EE
T ss_pred Ee
Confidence 77
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.27 Score=50.05 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=80.0
Q ss_pred CEEEEEEcCCCcEEEEEe-cC--CeeeeeeeeecCCCEEEEecc----CC-------eEEEEEcCCCeEEEeecc--CCc
Q 003331 538 GKIYFLDYLTGDIYWTFQ-TC--GEVKCQPVVDAPRQLIWCGSH----DH-------NLYALDFRNYRCVYKLPC--GGS 601 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~-~~--~~~~~~~~~~~~~~~i~~gs~----~g-------~l~~~d~~tg~~~w~~~~--~~~ 601 (829)
..+.+||+.+++ |... .. .......++..++..+++|+. ++ .++.+|+.+++ |+.-. ...
T Consensus 24 ~~~~~yd~~~~~--W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~ 99 (318)
T 2woz_A 24 TAAVAYDPMENE--CYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGLPPLPSA 99 (318)
T ss_dssp SEEEEEETTTTE--EEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEECSCBSSC
T ss_pred cceEEECCCCCc--eecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEECCCCCcc
Confidence 358999988876 5431 11 111112222323445555652 11 28889988764 55322 111
Q ss_pred c-cccceeecCCCEEEE-EecC-------CeEEEEEccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-Eee-----
Q 003331 602 I-FGSPAIDEVHDVLYV-ASTS-------GRLTAISVKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLV----- 664 (829)
Q Consensus 602 ~-~~~~~~~~~~~~l~v-~t~~-------g~l~~~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~----- 664 (829)
. ..+.+.. ++.||+ |..+ ..+++||+.+ . .|+.-.. .+........ .++.+|+ |..
T Consensus 100 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~--~--~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 100 RCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVA--A--KWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTT--T--EEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred ccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCC--C--CEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 1 1122223 356655 4322 2478888876 3 4654322 2222222222 3455554 332
Q ss_pred -CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe-eC-----CeEEEEeCCCCcEEEEEe
Q 003331 665 -DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-RN-----GSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 665 -~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~~-----g~l~~~d~~tG~~~w~~~ 725 (829)
...+.+|| .+. .|+.-...+. ...... ...++.||+.. .+ ..+++||+++.+ |+..
T Consensus 173 ~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 237 (318)
T 2woz_A 173 CTNRVFIYNPKKG--DWKDLAPMKTPRSMFGV-AIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVM 237 (318)
T ss_dssp BCCCEEEEETTTT--EEEEECCCSSCCBSCEE-EEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEEC
T ss_pred ccceEEEEcCCCC--EEEECCCCCCCcccceE-EEECCEEEEEcCcCCCCccceEEEEECCCCe--EEEC
Confidence 23488888 554 3654322111 111111 12245666542 21 357889987764 6543
|
| >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0012 Score=54.85 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHhcccCcceeccCCCc-cccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 287 ASDLLQVIRKAFGHALMVEEVLHHDNF-FTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~~~i~~~~~F-f~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..++.+.|++++.+.++ |.++++| -++|.|||.+++|+..| .++...+....|+..|+.++.+...
T Consensus 28 ~~ei~~~v~~il~e~l~---I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~~I~~~l~ 100 (113)
T 2cgq_A 28 EEAINATIQRILRTDRG---ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWFP 100 (113)
T ss_dssp HHHHHHHHHHHHTCCSC---CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHHHHHHHHh
Confidence 35688899999999988 8899999 58999999999998765 4677789999999999999987653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.13 Score=52.11 Aligned_cols=206 Identities=9% Similarity=0.034 Sum_probs=97.6
Q ss_pred CcEEEEECCCCcEEEEEEc--CCceeeceEEeeCCcEEEEEEe----C-----CEEEEEEcCCCcEEEEEecC--Cee-e
Q 003331 496 HKFICADAKRSSVLWEIKL--EGRIECSAAVLADFSQVVVGCY----K-----GKIYFLDYLTGDIYWTFQTC--GEV-K 561 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~v~vg~~----d-----g~l~~~d~~tG~~~w~~~~~--~~~-~ 561 (829)
..+++||+.+++ |..-. +.......++..++..+++|.. + ..+++||+.+.+ |+.... ... .
T Consensus 39 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~ 114 (308)
T 1zgk_A 39 SYLEAYNPSNGT--WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ--WSPCAPMSVPRNR 114 (308)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--EEECCCCSSCCBT
T ss_pred ceEEEEcCCCCe--EeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe--EeECCCCCcCccc
Confidence 368999998776 76421 1111112223334334444543 2 358999987764 654221 111 1
Q ss_pred eeeeeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEe-c-----CCeEEE
Q 003331 562 CQPVVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTA 626 (829)
Q Consensus 562 ~~~~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~ 626 (829)
...+.. ++.||+ |+.+ ..+++||+.+++ |+... ..... .+.+.. ++.||+.. . ...++.
T Consensus 115 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 115 IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEE
Confidence 112222 245554 4322 358999998864 55432 11111 122233 36666643 2 245889
Q ss_pred EEccCCCceEEEeeccC--CcceeeeeeeecCCEEEE-EeeC-----CeEEEEc-CCCCEEEEeecCCce-eecCccccc
Q 003331 627 ISVKALPFHTLWLHELE--VPAFASLCITSANRHVIC-CLVD-----GHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFA 696 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~--~~~~~s~~~~~~~~~l~~-~~~~-----g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~ 696 (829)
||+.+ . .|..-.. .+......... ++.+|+ |..+ ..+++|| .+. .|+.-...+. ...... ..
T Consensus 189 yd~~~--~--~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~-~~ 260 (308)
T 1zgk_A 189 YYPER--N--EWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGI-TV 260 (308)
T ss_dssp EETTT--T--EEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEE-EE
T ss_pred EeCCC--C--eEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEE-EE
Confidence 99886 3 4654322 12111222222 455554 4332 4588888 544 4654322111 011111 11
Q ss_pred CCCeEEEEe-e-----CCeEEEEeCCCCc
Q 003331 697 LPSQVLICS-R-----NGSIYSFEQESGN 719 (829)
Q Consensus 697 ~~~~i~~~t-~-----~g~l~~~d~~tG~ 719 (829)
.++.||+.. . ...+++||+++.+
T Consensus 261 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 261 HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 245666543 2 2457888887653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.19 Score=51.41 Aligned_cols=257 Identities=9% Similarity=0.033 Sum_probs=119.1
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecC-----CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC----
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTC-----GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG---- 599 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~---- 599 (829)
+.+|+....+.|+.- .+|-..|+.... ........+.+ +.+|+.+..+.|+. . .+|-.-|+....
T Consensus 47 ~~~~~~G~~g~i~~s--~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~~g~~g~i~~-S-~DgG~tW~~~~~~~~~ 120 (327)
T 2xbg_A 47 HHGWLVGVNATLMET--RDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLH-T-TDGGQSWSQIPLDPKL 120 (327)
T ss_dssp SCEEEEETTTEEEEE--SSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEEEEETTEEEE-E-SSTTSSCEECCCCTTC
T ss_pred CcEEEEcCCCeEEEe--CCCCCCCeECCCCCCCCCccEEEEEecC--CeEEEEECCCeEEE-E-CCCCCCceECccccCC
Confidence 455555557766543 344445764321 11222333433 66777766676665 3 333335654321
Q ss_pred -CcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC--cceeeeeeeecCCEEEEEeeCCeEEEEcCCCC
Q 003331 600 -GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV--PAFASLCITSANRHVICCLVDGHVVALDSSGS 676 (829)
Q Consensus 600 -~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~--~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~ 676 (829)
+.. ..+...+ ++.+|+.+.+|.++.- .+ +-.-|+..... ..+......+ ++.+++.+..|.++.-+..|-
T Consensus 121 ~~~~-~~i~~~~-~~~~~~~~~~g~v~~S-~D---gG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG 193 (327)
T 2xbg_A 121 PGSP-RLIKALG-NGSAEMITNVGAIYRT-KD---SGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQ 193 (327)
T ss_dssp SSCE-EEEEEEE-TTEEEEEETTCCEEEE-SS---TTSSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTC
T ss_pred CCCe-EEEEEEC-CCCEEEEeCCccEEEE-cC---CCCCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCC
Confidence 112 1222222 4678877777766542 22 33446543221 1223333333 445555556677766543323
Q ss_pred EEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI 756 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 756 (829)
..|+............+....++.+|+.+.+|.++..+ .++-..|+............+ ..+ . ...++.+|+
T Consensus 194 ~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~-~D~G~tW~~~~~~~~~~~~~~---~~v---~-~~~~~~~~~ 265 (327)
T 2xbg_A 194 TAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSD-PDNSENWGELLSPLRRNSVGF---LDL---A-YRTPNEVWL 265 (327)
T ss_dssp SSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEECCCBCTTSSCCSCE---EEE---E-ESSSSCEEE
T ss_pred CceeECCCCCCCccceeEECCCCCEEEEeCCceEEEec-CCCCCeeEeccCCcccCCcce---EEE---E-ecCCCEEEE
Confidence 34553211110000111123467899988888776654 233345653211100000000 000 0 011455676
Q ss_pred EccCCcEEEEEeecCccccccccccccceeeeeec----cCCcccccceE-ECCEEEEeeeCCeEEEEec
Q 003331 757 CTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE----LQGDIFSSPVM-IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 757 ~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~ 821 (829)
.+.+|.|+.- .+.| +.|.... ++.. +..... .++.+|+.+.+|.++.++.
T Consensus 266 ~g~~g~i~~S-~DgG-------------~tW~~~~~~~~~~~~-~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 266 AGGAGALLCS-QDGG-------------QTWQQDVDVKKVPSN-FYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EESTTCEEEE-SSTT-------------SSCEECGGGTTSSSC-CCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EeCCCeEEEe-CCCC-------------cccEEcCccCCCCCC-eEEEEEECCCceEEEcCCceEEEEcC
Confidence 6667777532 2222 2222222 1122 222222 5778999999999999875
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.26 Score=47.93 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=103.2
Q ss_pred CCeEEEE-ecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEE---EecC
Q 003331 485 SDIYLFV-GSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWT---FQTC 557 (829)
Q Consensus 485 ~~~~l~i-gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~---~~~~ 557 (829)
++++||+ ...++.|+.+|+. |+++.+..+.+ ..+ ..++..+ +.+|+.+ .++.++.++..+...+|. ...+
T Consensus 37 ~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~E-GIa~~~~-g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~ 113 (255)
T 3qqz_A 37 QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLE-TIEYIGD-NQFVISDERDYAIYVISLTPNSEVKILKKIKIP 113 (255)
T ss_dssp TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEE-EEEECST-TEEEEEETTTTEEEEEEECTTCCEEEEEEEECC
T ss_pred CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChH-HeEEeCC-CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccc
Confidence 4677886 4567899999997 99988887653 232 3344444 4555554 466888887654433332 2211
Q ss_pred C------eeeeeeeeecCCCEEEEeccCC--eEEEEEc--CCC--eEEEe--e--ccCCcccccceeecCCCEEEEEecC
Q 003331 558 G------EVKCQPVVDAPRQLIWCGSHDH--NLYALDF--RNY--RCVYK--L--PCGGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 558 ~------~~~~~~~~~~~~~~i~~gs~~g--~l~~~d~--~tg--~~~w~--~--~~~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
- .-.-..++++.++.+|++.... .||.++- .+. +.... + ...-.-.+...+++..+.+|+-+..
T Consensus 114 ~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~ 193 (255)
T 3qqz_A 114 LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHE 193 (255)
T ss_dssp CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETT
T ss_pred cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECC
Confidence 0 0113345666677888876542 5777772 111 11111 0 0111234566777777888887764
Q ss_pred -CeEEEEEccCCCceEEEeeccCCc---------ceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 622 -GRLTAISVKALPFHTLWLHELEVP---------AFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 622 -g~l~~~~~~~~~g~~~w~~~~~~~---------~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
..|..+|.+ |+.+-.+.+... -...+++.. ++++|+.+..+.+|.|.
T Consensus 194 s~~L~~~d~~---g~~~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 194 SRALQEVTLV---GEVIGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp TTEEEEECTT---CCEEEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEETTTEEEEEE
T ss_pred CCeEEEEcCC---CCEEEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcCCceEEEEE
Confidence 567778766 666665555421 123344544 44677777766666665
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.53 Score=47.72 Aligned_cols=194 Identities=9% Similarity=0.046 Sum_probs=109.9
Q ss_pred EEEEec-CCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCc---EEEEEEeC---CEEEEE--EcCCCcEEEEEe-
Q 003331 488 YLFVGS-HSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFS---QVVVGCYK---GKIYFL--DYLTGDIYWTFQ- 555 (829)
Q Consensus 488 ~l~igs-~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~---~v~vg~~d---g~l~~~--d~~tG~~~w~~~- 555 (829)
.+++++ ..+.|+.||+ +|+.+-.+..+. .+-..+.+.-.++ .+++...+ +.|..| |..++++. ...
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~-~i~~ 118 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ-SMTD 118 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE-ECSC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee-eccc
Confidence 345555 4567999999 799887765421 1111222322232 34555443 566656 66677632 221
Q ss_pred ------cC-Ceeeeeeee-ecCCC--EEEEeccCCeEEEEEc-------CCCeEEEeeccCCcccccceeecCCCEEEEE
Q 003331 556 ------TC-GEVKCQPVV-DAPRQ--LIWCGSHDHNLYALDF-------RNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA 618 (829)
Q Consensus 556 ------~~-~~~~~~~~~-~~~~~--~i~~gs~~g~l~~~d~-------~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~ 618 (829)
.. ..+....++ ++..+ ++|+...+|.+..|+. .+++.+.++..++.. -.+++++..+.||++
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~-EgcvvDd~~g~Lyv~ 197 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT-EGMAADDEYGRLYIA 197 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE-EEEEEETTTTEEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc-ceEEEcCCCCeEEEe
Confidence 11 222222232 23234 5778888888877665 234667777776543 356677778999999
Q ss_pred ecCCeEEEEEccCCC---ceEEEeeccCC--cceeeeeee--ecC-CEEEEEee-CCeEEEEc-C-CCCEEEEeecC
Q 003331 619 STSGRLTAISVKALP---FHTLWLHELEV--PAFASLCIT--SAN-RHVICCLV-DGHVVALD-S-SGSIIWRCRTG 684 (829)
Q Consensus 619 t~~g~l~~~~~~~~~---g~~~w~~~~~~--~~~~s~~~~--~~~-~~l~~~~~-~g~i~~~d-~-~g~~~w~~~~~ 684 (829)
-.+..|+.|+.+... ++.+....... .......+. .++ +++++.+. ++.+.+|| . +.+.+-.+.++
T Consensus 198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence 999889999966322 45555443221 112333443 223 36777663 56788888 4 55666555543
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.19 Score=53.70 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=102.9
Q ss_pred CEEEEEEcCCCcEEEEEecCCeee-----eeeeeec----CCCEEEEeccCCe---------------------------
Q 003331 538 GKIYFLDYLTGDIYWTFQTCGEVK-----CQPVVDA----PRQLIWCGSHDHN--------------------------- 581 (829)
Q Consensus 538 g~l~~~d~~tG~~~w~~~~~~~~~-----~~~~~~~----~~~~i~~gs~~g~--------------------------- 581 (829)
..|.+|++ +|+.+|++..+..+. ..+.+.+ ...-|++.+.+|.
T Consensus 151 ~~l~aY~l-dG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKL-DGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 45888986 599999987654322 2233322 1234666655443
Q ss_pred -EEEEEcCCCeEEEeeccCC---cc---------------cccceeecCCCEEEEEe---cCCeEEEEEccCCCceEEEe
Q 003331 582 -LYALDFRNYRCVYKLPCGG---SI---------------FGSPAIDEVHDVLYVAS---TSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 582 -l~~~d~~tg~~~w~~~~~~---~~---------------~~~~~~~~~~~~l~v~t---~~g~l~~~~~~~~~g~~~w~ 639 (829)
|.++|-.||+.+++..... .. .....++.+.-.++++. ....+.+||.++..-+.+|.
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~ 309 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWT 309 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEE
Confidence 8999999999999876521 11 01111232222344433 12358899988733357898
Q ss_pred eccCCcc--------eeeeeeee---c-CCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccccCCCeEEEEe
Q 003331 640 HELEVPA--------FASLCITS---A-NRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 640 ~~~~~~~--------~~s~~~~~---~-~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t 705 (829)
+....+. ..++.+.. + ...|++|+ .++|.+|+.+|....+. .+....+.+...+-.+|.+.
T Consensus 310 ~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~ 384 (591)
T 2zux_A 310 LDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS-----MAVDHDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVH 384 (591)
T ss_dssp EETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT-----EEECTTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEEC
T ss_pred ecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee-----eEECCCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEe
Confidence 8765321 01222211 1 12444443 36788999999986532 12222221222233577765
Q ss_pred eC----CeEEEEeCCCCcEEEEEec
Q 003331 706 RN----GSIYSFEQESGNLLWEYSV 726 (829)
Q Consensus 706 ~~----g~l~~~d~~tG~~~w~~~~ 726 (829)
.+ .+....|..||+++|....
T Consensus 385 E~~~~~~G~~~~dA~tG~vlw~~~~ 409 (591)
T 2zux_A 385 EDKNAKYGLSFRDAATGKILWGVYA 409 (591)
T ss_dssp CCTTSSCSEEEEETTTCCEEEEECC
T ss_pred cCCCCCCccEEEECCCCcEEEEcCC
Confidence 54 1466789999999999864
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.5 Score=52.99 Aligned_cols=224 Identities=8% Similarity=-0.036 Sum_probs=112.0
Q ss_pred CCCcEEEEECCCCcEEEEEEc-CCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcE-EEEEecCCeeeeeeeeecCC
Q 003331 494 HSHKFICADAKRSSVLWEIKL-EGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDI-YWTFQTCGEVKCQPVVDAPR 570 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w~~~~-~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~ 570 (829)
..+.|..+|+......-.... .........+...++.||+... .+.|++++...... ...+..+-......+++..+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 345688888764421111111 1111224455555677877654 57888888654421 12222221222334555446
Q ss_pred CEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcce
Q 003331 571 QLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 571 ~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
+.||+.. ..+.|..++.......-........-..+++++.++.+|++.. .+.|...+.+...-..+-..... ..
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~--~P 173 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY--WP 173 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS--SE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC--CC
Confidence 7777764 4577888886643322111111122335567777789998875 36788888763111222111111 12
Q ss_pred eeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003331 648 ASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
...++...++.+|++.. .+.|..+|.+|.....+..+ ....|.-....++.||+.. .++.|..+|+.+|+..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~--~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC--CCCCceEEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 34556556788887753 56788888556544333211 1122221112244777764 4678999999888653
|
| >2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0021 Score=52.88 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcccCcc----eeccCCCcc-ccCC-ChHHHHHHHHHc------CCcchhh--hcCCCHHHHHHHHHhhc
Q 003331 289 DLLQVIRKAFGHALMVE----EVLHHDNFF-TMGG-NSIAAAHVAHNL------GIDMRLI--YNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~----~i~~~~~Ff-~lGg-dSl~a~~l~~~l------~~~~~~~--~~~pt~~~la~~l~~~~ 354 (829)
++.+.+++++.+.++++ ++.++.+|+ ++|. |||.+++|...| .++...+ -...|+..|+.++.++.
T Consensus 24 ~i~~~i~~il~e~l~~~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~~I~~~~ 103 (105)
T 2lki_A 24 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKL 103 (105)
T ss_dssp CTHHHHHHHHHHHTTCTTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHHHHHHHh
Confidence 35667888888888754 688899999 5999 999999998765 3666664 36899999999998754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.41 Score=55.16 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=109.3
Q ss_pred EEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCe----EEEeeccCCcccc
Q 003331 530 QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYR----CVYKLPCGGSIFG 604 (829)
Q Consensus 530 ~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~----~~w~~~~~~~~~~ 604 (829)
.+++.. ...|+.+++..++.......... .....++...+.||+... .+.|+.+++.... ..-.+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~~~~~-~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEECSCSS-EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeecCCCc-eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 344443 35578888766554433322222 223345544667776543 4678888876421 1111111111223
Q ss_pred cceeecCCCEEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEe
Q 003331 605 SPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRC 681 (829)
Q Consensus 605 ~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~ 681 (829)
.++++..++.||++.. .+.|.+++++...-+.+-...... ...+++.+..+.||+.... +.|..++.+|...-.+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~--P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK--PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCC--cceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 4556655677877654 577888888741111221111111 2455666667888887643 5688888556543222
Q ss_pred ecCCceeecC-ccccc-CCCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEE-E
Q 003331 682 RTGGPIFAGP-CTSFA-LPSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI-C 757 (829)
Q Consensus 682 ~~~~~~~~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 757 (829)
-... +..| .+..+ .++.||+.. ..+.|..++.. |..+..+.........|+.. ...++.||+ -
T Consensus 553 v~~~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~gl----------av~~~~lYwtD 619 (791)
T 3m0c_C 553 VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSL----------AVFEDKVFWTD 619 (791)
T ss_dssp ECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEE----------EEETTEEEEEE
T ss_pred EeCC--CCCceEEEEecCCCeEEEEeCCCCcEEEEecC-CCceEEEecCCCccCCCCEE----------EEeCCEEEEEE
Confidence 1111 1111 12222 356787774 45678888864 44433332111111111100 011344444 4
Q ss_pred ccCCcEEEEEeecC
Q 003331 758 TSSGSIHILRVNLD 771 (829)
Q Consensus 758 ~~~G~l~~~d~~~~ 771 (829)
...+.|+.+|..+|
T Consensus 620 ~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 620 IINEAIFSANRLTG 633 (791)
T ss_dssp TTTTEEEEEETTTC
T ss_pred CCCCEEEEEeCCCC
Confidence 55677888887655
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.55 Score=47.18 Aligned_cols=247 Identities=12% Similarity=0.125 Sum_probs=125.4
Q ss_pred EEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC--------------CeEEEEE
Q 003331 523 AVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD--------------HNLYALD 586 (829)
Q Consensus 523 ~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~--------------g~l~~~d 586 (829)
.++.+++.||.... ++.||.++. +|.....+... .+ ..+...++.||..... ..||.++
T Consensus 20 ~~~~~g~~iy~~n~~d~~~ly~~~~-dg~~~~~l~~~-~~---~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 20 LFCESDGEVFFSNTNDNGRLYAMNI-DGSNIHKLSND-TA---MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp CEEEETTEEEEEEGGGTTEEEEEET-TSCSCEEEEEE-EE---EEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEEeCCEEEEEeCCCCceEEEEcC-CCCCCEEccCC-ce---eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34456677877653 578999984 55444333321 11 1223345667665432 4688888
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEe----cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEE
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS----TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICC 662 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t----~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~ 662 (829)
...++.. .+..... . .+..+++.||... .+..|+..+++. +...+...... ..+..+++.||..
T Consensus 95 ~dg~~~~-~l~~~~~--~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG---s~~~~lt~~~~----~~~~~~g~~iy~t 162 (302)
T 3s25_A 95 RNGHGST-VLDPDPC--I--YASLIGNYIYYLHYDTQTATSLYRIRIDG---EEKKKIKNHYL----FTCNTSDRYFYYN 162 (302)
T ss_dssp TTSCCCE-EEECSCE--E--EEEEETTEEEEEEESSSSCEEEEEEETTS---CCCEEEESSCC----CCSEEETTEEEEE
T ss_pred CCCCcce-EeecCCc--c--EEEEeCCEEEEEeecCCCCceEEEEECCC---CCeEEEeCCCc----eEeeEECCEEEEE
Confidence 7766422 2211111 1 2223457888765 355788888874 22222222111 2345567788877
Q ss_pred ee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEeeC--CeEEEEeCCCCcEEEEEecCCccccccccccc
Q 003331 663 LV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRN--GSIYSFEQESGNLLWEYSVGDPITASAYIDEH 739 (829)
Q Consensus 663 ~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~--g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 739 (829)
+. ...|++++.+|....... .++.. .|..+ .++.||....+ ..|+..+.+.+.. ..+ ..... +.++
T Consensus 163 ~~g~~~Iy~~~l~g~~~~~l~-~~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~-~~L-t~~~~---~~~~-- 231 (302)
T 3s25_A 163 NPKNGQLYRYDTASQSEALFY-DCNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNP-VVL-TEANI---EHYN-- 231 (302)
T ss_dssp CTTTCCEEEEETTTTEEEEEE-CSCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCC-EEC-SCSCE---EEEE--
T ss_pred eCCCceEEEEECCCCCEEEEe-CCCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCe-EEE-eCCCc---ceEE--
Confidence 65 578999884444333332 22222 22221 35677766543 3688888765442 111 11111 1111
Q ss_pred cccccccccCCCcEEEEEcc--CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeee-CCeE
Q 003331 740 LQLKLESCLSIDRLVCICTS--SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCR-DDYI 816 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~--~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~-~g~l 816 (829)
+.++.||..+. .+.|+..+.+.... +.+.. +. ..+..+.++.||.... .+.|
T Consensus 232 ---------~~g~~Iy~~~~~~~~~i~~~~~DG~~r-----------~~l~~----~~-~~~i~i~~d~Iy~td~~~~~i 286 (302)
T 3s25_A 232 ---------VYGSLIFYQRGGDNPALCVVKNDGTGF-----------KELAK----GE-FCNINVTSQYVYFTDFVSNKE 286 (302)
T ss_dssp ---------EETTEEEEEECSSSCEEEEEETTSCCC-----------EEEEE----SC-EEEEEECSSEEEEEETTTCCE
T ss_pred ---------ECCCEEEEEECCCCcEEEEEECCCCcc-----------EEeeC----Cc-cceEEEeCCEEEEEECCCCeE
Confidence 12666666532 34577776653210 11111 11 1244557888888763 4678
Q ss_pred EEEecc
Q 003331 817 YCIALE 822 (829)
Q Consensus 817 ~~~d~~ 822 (829)
++.+..
T Consensus 287 ~~~~~d 292 (302)
T 3s25_A 287 YCTSTQ 292 (302)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 888753
|
| >2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0043 Score=49.48 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=54.8
Q ss_pred cccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc----CCcch---hhhcCCCHHHHHHHHHhhc
Q 003331 286 KASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL----GIDMR---LIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l----~~~~~---~~~~~pt~~~la~~l~~~~ 354 (829)
...++++.++++..+.+++ +.|.++.+|+ +||.|||.+++|+..+ ++.+. .-|...|+..++.+|.+..
T Consensus 11 ~~~~I~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vdyI~~~~ 89 (102)
T 2l9f_A 11 AATGALELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAEALEARE 89 (102)
T ss_dssp SSCCHHHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHHHHHHhh
Confidence 3567899999999999987 5699999987 8999999999887654 44432 2244599999999998865
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.57 Score=47.31 Aligned_cols=210 Identities=12% Similarity=0.068 Sum_probs=97.4
Q ss_pred CeEEEEEcCCCeEEEeeccC--Ccc-cccceeecCCCEEEEEe-c---------CCeEEEEEccCCCceEEEeeccCC--
Q 003331 580 HNLYALDFRNYRCVYKLPCG--GSI-FGSPAIDEVHDVLYVAS-T---------SGRLTAISVKALPFHTLWLHELEV-- 644 (829)
Q Consensus 580 g~l~~~d~~tg~~~w~~~~~--~~~-~~~~~~~~~~~~l~v~t-~---------~g~l~~~~~~~~~g~~~w~~~~~~-- 644 (829)
..+++||+.+++ |..-.. ... ..+.+.. ++.||+.. . ...++.||+.+ . .|+.-...
T Consensus 39 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~--~--~W~~~~~~p~ 110 (308)
T 1zgk_A 39 SYLEAYNPSNGT--WLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT--N--QWSPCAPMSV 110 (308)
T ss_dssp CCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT--T--EEEECCCCSS
T ss_pred ceEEEEcCCCCe--EeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC--C--eEeECCCCCc
Confidence 468999998875 654321 111 1122233 36666543 2 13588899886 3 46543222
Q ss_pred cceeeeeeeecCCEEEEE-ee-----CCeEEEEc-CCCCEEEEeecCCce-eecCcccccCCCeEEEEe-e-----CCeE
Q 003331 645 PAFASLCITSANRHVICC-LV-----DGHVVALD-SSGSIIWRCRTGGPI-FAGPCTSFALPSQVLICS-R-----NGSI 710 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~-~~-----~g~i~~~d-~~g~~~w~~~~~~~~-~~~~~~~~~~~~~i~~~t-~-----~g~l 710 (829)
+........ .++.+|+. .. ...+.+|| .+. .|+.-...+. ...... ...++.||+.. . ...+
T Consensus 111 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~ 186 (308)
T 1zgk_A 111 PRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVGV-AVLNRLLYAVGGFDGTNRLNSA 186 (308)
T ss_dssp CCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCEE-EEETTEEEEECCBCSSCBCCCE
T ss_pred CccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceEE-EEECCEEEEEeCCCCCCcCceE
Confidence 111111222 24555553 22 23577888 544 3554322111 011111 11256666543 2 2458
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC-----CcEEEEEeecCccccccccccccce
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS-----GSIHILRVNLDVTGKENQSKDHMVQ 785 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----G~l~~~d~~~~~~~~~~~~~~~~~~ 785 (829)
++||+.+. .|+....-+... ... ......+..+++|..+ ..+++||..++
T Consensus 187 ~~yd~~~~--~W~~~~~~p~~r---~~~------~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-------------- 241 (308)
T 1zgk_A 187 ECYYPERN--EWRMITAMNTIR---SGA------GVCVLHNCIYAAGGYDGQDQLNSVERYDVETE-------------- 241 (308)
T ss_dssp EEEETTTT--EEEECCCCSSCC---BSC------EEEEETTEEEEECCBCSSSBCCCEEEEETTTT--------------
T ss_pred EEEeCCCC--eEeeCCCCCCcc---ccc------eEEEECCEEEEEeCCCCCCccceEEEEeCCCC--------------
Confidence 89998765 465432111100 000 0011113333344332 45788887643
Q ss_pred eeeee-ccCCc-ccccceEECCEEEEee-e-----CCeEEEEecccccc
Q 003331 786 EFAKL-ELQGD-IFSSPVMIGGRVFVGC-R-----DDYIYCIALETQHL 826 (829)
Q Consensus 786 ~~~~~-~~~~~-~~~s~~~~~~~l~vg~-~-----~g~l~~~d~~tg~~ 826 (829)
.|... .++.. ...+.++.++.||+-. . ...+++||+++.+.
T Consensus 242 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 242 TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 22221 12221 2224445678887743 2 35689999988764
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.21 Score=53.61 Aligned_cols=183 Identities=16% Similarity=0.255 Sum_probs=100.5
Q ss_pred EEEEEEcCCCcEEEEEecCCeee-----eeeeeec----CCCEEEEeccCC----------------------------e
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVK-----CQPVVDA----PRQLIWCGSHDH----------------------------N 581 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~-----~~~~~~~----~~~~i~~gs~~g----------------------------~ 581 (829)
.|.+|++ +|+.+|++..+..+. ..+.+.+ ...-|++.+.+| .
T Consensus 156 ~l~aY~l-dG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKL-DGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 6888886 599999987643322 2233322 122356654443 3
Q ss_pred EEEEEcCCCeEEEeeccCC---cc---------------cccceeecCCCEEEEEe---cCCeEEEEEccCCCceEEEee
Q 003331 582 LYALDFRNYRCVYKLPCGG---SI---------------FGSPAIDEVHDVLYVAS---TSGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 582 l~~~d~~tg~~~w~~~~~~---~~---------------~~~~~~~~~~~~l~v~t---~~g~l~~~~~~~~~g~~~w~~ 640 (829)
|.++|-.||+.+++..... .. .....++.+.-.++++. ....|.+||..+..-+..|.+
T Consensus 235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ 314 (620)
T 2zuy_A 235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVF 314 (620)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEe
Confidence 7999999999998876521 00 00111222222333332 124588999887333678988
Q ss_pred ccCCcc---e-----eeeeee---ec-CCEEEEEeeCCeEEEEcCCCCEEEEeecCC--ceeecCcccccCCCeEEEEee
Q 003331 641 ELEVPA---F-----ASLCIT---SA-NRHVICCLVDGHVVALDSSGSIIWRCRTGG--PIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 641 ~~~~~~---~-----~s~~~~---~~-~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~--~~~~~~~~~~~~~~~i~~~t~ 706 (829)
....+. + .++.+. .+ ...|++|+ .++|.+|+.+|....+. .+....+.+...+-.+|.+.+
T Consensus 315 ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E 389 (620)
T 2zuy_A 315 DSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGA-----MAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHE 389 (620)
T ss_dssp ETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEETT-----EEECTTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECC
T ss_pred cCCCCcccccccccCcCceEEecCCCCceeEEEee-----eEECCCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEec
Confidence 764321 0 112221 11 22455443 36788999999987532 222222222222234555544
Q ss_pred C----CeEEEEeCCCCcEEEEEecC
Q 003331 707 N----GSIYSFEQESGNLLWEYSVG 727 (829)
Q Consensus 707 ~----g~l~~~d~~tG~~~w~~~~~ 727 (829)
+ .+....|..||+++|.....
T Consensus 390 ~~~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 390 DATKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp CTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCCCCCceEEEECCCCcEEEEecCc
Confidence 3 26788999999999998653
|
| >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0042 Score=51.31 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=57.3
Q ss_pred cccHHHHHHHHHHhcccC-cceeccCCCcc------ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHh
Q 003331 286 KASDLLQVIRKAFGHALM-VEEVLHHDNFF------TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLE 352 (829)
Q Consensus 286 ~~~~~~~~l~~~~~~~l~-~~~i~~~~~Ff------~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~ 352 (829)
...++...+++++++.++ ...+.++.+|+ ++|.|||.+++|+..| .++...+...+|+..|+.++..
T Consensus 16 ~~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 95 (107)
T 3ce7_A 16 DINAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVS 95 (107)
T ss_dssp CHHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHHHHHH
Confidence 356788899999998886 34688899996 8899999999998765 3677778999999999999987
Q ss_pred hc
Q 003331 353 KK 354 (829)
Q Consensus 353 ~~ 354 (829)
..
T Consensus 96 ~~ 97 (107)
T 3ce7_A 96 ER 97 (107)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.56 Score=50.84 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=64.9
Q ss_pred EEEEEeCCEEEEEEcCCCcEEEEEecCCee---eeeeeeecCCCEEEEe--------------ccCCeEEEEEcCCCeEE
Q 003331 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEV---KCQPVVDAPRQLIWCG--------------SHDHNLYALDFRNYRCV 593 (829)
Q Consensus 531 v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~~i~~g--------------s~~g~l~~~d~~tg~~~ 593 (829)
+..+. ...++.+| ..|+++|++..+... .-.....++++.|+.. ..+..++.+| .+|+++
T Consensus 220 l~~g~-G~~i~elD-~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv 296 (571)
T 3elq_A 220 FTAVQ-GQHWYEFD-MMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVV 296 (571)
T ss_dssp EEEEE-BTEEEEEC-TTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEE
T ss_pred EEEec-CcEEEEEC-CCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEE
Confidence 44443 35699999 689999998765421 1111223344444432 1245789999 999999
Q ss_pred EeeccC------C-cc--------------------------------------------cccceeecCCCEEEEEecCC
Q 003331 594 YKLPCG------G-SI--------------------------------------------FGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 594 w~~~~~------~-~~--------------------------------------------~~~~~~~~~~~~l~v~t~~g 622 (829)
|..... . .. +.+...+..++.+++.+..-
T Consensus 297 ~eW~~~dhld~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~g~~~g~~~~~Dw~HiNsv~~d~~dd~~liSsR~~ 376 (571)
T 3elq_A 297 DVWDLTKILDPKRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNWAHVNSIAYDAKDDSIILSSRHQ 376 (571)
T ss_dssp EEEEHHHHSCTTCCTTGGGSBTTC-------CCCSCBCCCCTTCCSSSSSCSSTTSCSCCEEEEEEETTTTEEEEEETTT
T ss_pred EEEEhHHccCcccccchhccccccccccccccccccccccccccccccccccCCCCCCcEecceeEcCCCCEEEEECCcc
Confidence 975431 0 00 11122334356777777766
Q ss_pred eEEEEEccCCCceEEEeeccC
Q 003331 623 RLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~ 643 (829)
.|+.+|. + |+.+|.....
T Consensus 377 ~I~~Id~-t--G~V~W~LGg~ 394 (571)
T 3elq_A 377 GVVKIGR-D--KQVKWILAPS 394 (571)
T ss_dssp EEEEEET-T--SCEEEEESCS
T ss_pred EEEEEcC-C--CcEEEEECCC
Confidence 8888885 5 9999997543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.27 Score=52.80 Aligned_cols=195 Identities=8% Similarity=0.047 Sum_probs=106.0
Q ss_pred eEEee-CCcEEEEEEeC-CEEEEEEcCCCcEEEEEecCC-e--eeeeeee-------ecCCCEEEEeccCC-------eE
Q 003331 522 AAVLA-DFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTCG-E--VKCQPVV-------DAPRQLIWCGSHDH-------NL 582 (829)
Q Consensus 522 ~~~~~-~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~~~-~--~~~~~~~-------~~~~~~i~~gs~~g-------~l 582 (829)
.++.+ +++.||+.... +.|.++|++++.+.-...... . -.....+ +.+++.+|+..+.+ .+
T Consensus 144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V 223 (496)
T 3kya_A 144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV 223 (496)
T ss_dssp EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence 34553 35678888764 579999988887764443322 1 1233445 55666788887654 37
Q ss_pred EEEEcCC-CeEEE-----eeccCCcccccceeecCCCEEEEEec-CCeEEEEEcc-------CCCceEEEe---------
Q 003331 583 YALDFRN-YRCVY-----KLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVK-------ALPFHTLWL--------- 639 (829)
Q Consensus 583 ~~~d~~t-g~~~w-----~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~-------~~~g~~~w~--------- 639 (829)
+.++... |+..+ .+...... ..+.++++++.||+... ++.|+.+|++ + +.. |+
T Consensus 224 ~~i~r~~~G~~~~~~~~~~v~~~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~t--g~~-~tp~~~~~~g~ 299 (496)
T 3kya_A 224 YIIKRNADGTFDDRSDIQLIAAYKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKN--GGS-WDPIVKNNPNT 299 (496)
T ss_dssp EEEECCTTSCCSTTSCEEEEEEESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHT--TCC-CCCBGGGCTTT
T ss_pred EEEecCCCCceeecccceeeccCCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccC--cee-ecccccccccc
Confidence 8887544 33321 11111111 23456666788888764 5679999987 4 332 11
Q ss_pred ----eccC-CcceeeeeeeecCCEEEEEee-CCeEEEEc---CCCCE----EEEee--cC----C----ceeecCc-c-c
Q 003331 640 ----HELE-VPAFASLCITSANRHVICCLV-DGHVVALD---SSGSI----IWRCR--TG----G----PIFAGPC-T-S 694 (829)
Q Consensus 640 ----~~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d---~~g~~----~w~~~--~~----~----~~~~~~~-~-~ 694 (829)
+... ......+++.++++.+|++.. +..|..++ .++.+ .+.-. .. + ..+..|. . .
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 1111 111235667777777788754 56788866 23321 11111 00 0 1122332 1 1
Q ss_pred cc-------CCCeEEEEe-eCCeEEEEeCCCCcEE
Q 003331 695 FA-------LPSQVLICS-RNGSIYSFEQESGNLL 721 (829)
Q Consensus 695 ~~-------~~~~i~~~t-~~g~l~~~d~~tG~~~ 721 (829)
.+ .++.||++. .++.|..++ .+|.+.
T Consensus 380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~ 413 (496)
T 3kya_A 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS 413 (496)
T ss_dssp EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE
T ss_pred EccccccccCCCeEEEEECCCCEEEEEe-CCCCEE
Confidence 22 456888874 467899998 467554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.94 Score=45.89 Aligned_cols=194 Identities=10% Similarity=0.142 Sum_probs=105.9
Q ss_pred EEEE-eCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCC---EEEEecc---CCeEEEE--EcCCCeEEEeec---
Q 003331 532 VVGC-YKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQ---LIWCGSH---DHNLYAL--DFRNYRCVYKLP--- 597 (829)
Q Consensus 532 ~vg~-~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~---~i~~gs~---~g~l~~~--d~~tg~~~w~~~--- 597 (829)
++++ ..++|+.||+ +|+++..+..+. .+-..+-+.-.+. .+++... ++.|..| |+.++++.-...
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~ 121 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDH 121 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTS
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccccc
Confidence 4443 3578999997 999988765422 1222222221122 2344333 3556666 667765322111
Q ss_pred ---cC-Cccccccee--ecCCC--EEEEEecCCeEEEEEccC-----CCceEEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 598 ---CG-GSIFGSPAI--DEVHD--VLYVASTSGRLTAISVKA-----LPFHTLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 598 ---~~-~~~~~~~~~--~~~~~--~l~v~t~~g~l~~~~~~~-----~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
.. ..... .|+ +...+ ++|+...+|.+..|++.. .+++.+.++...... ..+......+.+|++-.
T Consensus 122 pv~t~~~~pyG-lcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~-EgcvvDd~~g~Lyv~eE 199 (355)
T 3amr_A 122 PIATAINEVYG-FTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQT-EGMAADDEYGRLYIAEE 199 (355)
T ss_dssp CEECCCSSCCC-EEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCE-EEEEEETTTTEEEEEET
T ss_pred CcCCCCCCeeE-EEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCc-ceEEEcCCCCeEEEecc
Confidence 11 11222 233 33234 588888889888877632 124566666665432 34455556799999999
Q ss_pred CCeEEEEc-C-----CCCEEEEeecCC---ceeecCcc-cccCCCeEEEEe-eCCeEEEEeCC-CCcEEEEEecCC
Q 003331 665 DGHVVALD-S-----SGSIIWRCRTGG---PIFAGPCT-SFALPSQVLICS-RNGSIYSFEQE-SGNLLWEYSVGD 728 (829)
Q Consensus 665 ~g~i~~~d-~-----~g~~~w~~~~~~---~~~~~~~~-~~~~~~~i~~~t-~~g~l~~~d~~-tG~~~w~~~~~~ 728 (829)
+-+|..|+ . +++++.....+. .+...... ..+..+.+++.+ .++.+..||.+ +.+.+-.+.+..
T Consensus 200 d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEECC
T ss_pred cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEecC
Confidence 98999999 3 244555443221 11111111 112234677777 35689999986 667776666544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.44 Score=47.90 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=64.2
Q ss_pred CcEEEEECCCCc-EEEEEEcC--CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEe--cCCeee-eee
Q 003331 496 HKFICADAKRSS-VLWEIKLE--GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQ--TCGEVK-CQP 564 (829)
Q Consensus 496 g~l~~~d~~tg~-~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~--~~~~~~-~~~ 564 (829)
..++.||+.+++ ..|+.-.. .......++..++..+++|..+ ..+++||+.+++ |+.. .+.... ...
T Consensus 78 ~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~ 155 (301)
T 2vpj_A 78 SSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGL 155 (301)
T ss_dssp CCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEE
T ss_pred ceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceE
Confidence 369999998876 33654321 1111122223343333444432 468999987764 5432 121111 122
Q ss_pred eeecCCCEEEE-eccC-----CeEEEEEcCCCeEEEeecc--CCcc-cccceeecCCCEEEEEe-c-----CCeEEEEEc
Q 003331 565 VVDAPRQLIWC-GSHD-----HNLYALDFRNYRCVYKLPC--GGSI-FGSPAIDEVHDVLYVAS-T-----SGRLTAISV 629 (829)
Q Consensus 565 ~~~~~~~~i~~-gs~~-----g~l~~~d~~tg~~~w~~~~--~~~~-~~~~~~~~~~~~l~v~t-~-----~g~l~~~~~ 629 (829)
++. ++.||+ |+.+ ..+++||+.++ .|+... .... ..+.+.. ++.||+.. . ...++.||+
T Consensus 156 ~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 156 VVA--SGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred EEE--CCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence 222 244554 5433 46899999887 465432 1111 1122233 35666543 2 245899998
Q ss_pred cC
Q 003331 630 KA 631 (829)
Q Consensus 630 ~~ 631 (829)
++
T Consensus 230 ~~ 231 (301)
T 2vpj_A 230 RT 231 (301)
T ss_dssp TT
T ss_pred CC
Confidence 86
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.53 Score=48.70 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=35.8
Q ss_pred CeEEEE--ecCCCcEEEEECCCCcEEEEEEc--C--CceeeceEEeeCCcEEEEEEe-C---------CEEEEEEcCCCc
Q 003331 486 DIYLFV--GSHSHKFICADAKRSSVLWEIKL--E--GRIECSAAVLADFSQVVVGCY-K---------GKIYFLDYLTGD 549 (829)
Q Consensus 486 ~~~l~i--gs~~g~l~~~d~~tg~~~w~~~~--~--~~~~~~~~~~~~~~~v~vg~~-d---------g~l~~~d~~tG~ 549 (829)
++.||+ |.....+++||..+....|+.-. + .+.. ..++..++...++|.. + ..+++||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ-ATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS-CEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc-ceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 455555 23345799999976555687432 2 1211 2223334333334544 1 358999987754
Q ss_pred EEEEE
Q 003331 550 IYWTF 554 (829)
Q Consensus 550 ~~w~~ 554 (829)
|+.
T Consensus 98 --W~~ 100 (357)
T 2uvk_A 98 --WVK 100 (357)
T ss_dssp --EEE
T ss_pred --EEE
Confidence 754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=1.2 Score=50.10 Aligned_cols=178 Identities=12% Similarity=0.019 Sum_probs=95.9
Q ss_pred eCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC
Q 003331 536 YKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD 613 (829)
Q Consensus 536 ~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~ 613 (829)
....|..+|+.+.+........+ .......++..++.||... .++.|+.+++..+........+.......+++..++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 46789999987765433333222 1122344555667777664 457888888765433222222212223455665567
Q ss_pred EEEEEec-CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEeecCCceeec
Q 003331 614 VLYVAST-SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTGGPIFAG 690 (829)
Q Consensus 614 ~l~v~t~-~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~~~~~~~~~~ 690 (829)
.||++.. .+.|.+++++...-+.+-...... ....++.+..+.+|+... .+.|..++.+|...-..-.. +..
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~--P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---~~~ 167 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS--PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN---VGR 167 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCC--EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---CSS
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCC--cccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC---CCC
Confidence 7877654 567888887742112222112222 245556666788888764 46788887445432221111 111
Q ss_pred C-ccccc-CCCeEEEEe-eCCeEEEEeCCCC
Q 003331 691 P-CTSFA-LPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 691 ~-~~~~~-~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
| .+..+ .++.||++. ..+.|.++|...+
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 1 12222 246777764 4577888887543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=1.8 Score=48.37 Aligned_cols=190 Identities=7% Similarity=-0.093 Sum_probs=97.2
Q ss_pred eCCCeEEEEecC-CCcEEEEECCCCcE-EEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEe-cCC
Q 003331 483 KDSDIYLFVGSH-SHKFICADAKRSSV-LWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQ-TCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~-~g~l~~~d~~tg~~-~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~-~~~ 558 (829)
+..++.||+... ++.|+.++...... ......+-......++...++.+|+... .+.|..+++. |+...... ..-
T Consensus 48 ~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l 126 (619)
T 3s94_A 48 VFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQEL 126 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSC
T ss_pred EeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCC
Confidence 335677887764 57888988764421 1112222111224455554677777754 5678888854 44332222 111
Q ss_pred eeeeeeeeecCCCEEEEeccC--CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCeEEEEEccCCCce
Q 003331 559 EVKCQPVVDAPRQLIWCGSHD--HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFH 635 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~--g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~ 635 (829)
.-....++++.++.||+..+. +.|+..+.......-........-...+++.++++||++.. .+.|..++.+ |.
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d---G~ 203 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---GT 203 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS---CC
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC---CC
Confidence 112234566667888887643 57887775432211111111112234566766688887754 4678888876 33
Q ss_pred EEEeecc-CCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEE
Q 003331 636 TLWLHEL-EVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSII 678 (829)
Q Consensus 636 ~~w~~~~-~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~ 678 (829)
....... ...... .+...++.+|+... ++.|..+| .+|+..
T Consensus 204 ~~~~~~~~~~~~P~--gi~~~~~~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 204 NRQAVVKGSLPHPF--ALTLFEDILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEC---------CC--CEEESSSEEEEECTTTCSEEEEESSSCCCC
T ss_pred ccEEEEeCCCCCce--EEEEeCCEEEEecCCCCEEEEEECCCCccc
Confidence 3322211 111111 23334557777654 57799999 677543
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.97 Score=49.01 Aligned_cols=68 Identities=12% Similarity=0.034 Sum_probs=43.7
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce---eeceEEeeCCcEEEEEE--------------eCCEEEEEEcCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---ECSAAVLADFSQVVVGC--------------YKGKIYFLDYLT 547 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~---~~~~~~~~~~~~v~vg~--------------~dg~l~~~d~~t 547 (829)
.++.+..+.. ..++.+|. .|+++|++..+... .-.....++|..|+... .+..++-+| .|
T Consensus 216 ~nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~t 292 (571)
T 3elq_A 216 PRGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KS 292 (571)
T ss_dssp TTSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TT
T ss_pred CCCCEEEecC-cEEEEECC-CCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CC
Confidence 3455555543 34899996 69999998876432 11233455665555332 245789999 99
Q ss_pred CcEEEEEe
Q 003331 548 GDIYWTFQ 555 (829)
Q Consensus 548 G~~~w~~~ 555 (829)
|+++|...
T Consensus 293 GeVv~eW~ 300 (571)
T 3elq_A 293 GRVVDVWD 300 (571)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 99998743
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.78 Score=46.77 Aligned_cols=250 Identities=10% Similarity=0.075 Sum_probs=120.9
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC---
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC--- 557 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~--- 557 (829)
.+.+|+..+.|.|+.- . +|-..|+.... ......+.+. + +.+|+.+..+.|+.- .+|-.-|+....
T Consensus 46 ~~~~~~~G~~g~i~~s-~-DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~~~~~g~~g~i~~S--~DgG~tW~~~~~~~~ 119 (327)
T 2xbg_A 46 RHHGWLVGVNATLMET-R-DGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NEGWIVGEPPIMLHT--TDGGQSWSQIPLDPK 119 (327)
T ss_dssp SSCEEEEETTTEEEEE-S-STTSSCEECCCCCSCCCCEEEEEEEE-T-TEEEEEEETTEEEEE--SSTTSSCEECCCCTT
T ss_pred CCcEEEEcCCCeEEEe-C-CCCCCCeECCCCCCCCCccEEEEEec-C-CeEEEEECCCeEEEE--CCCCCCceECccccC
Confidence 3445555566656443 2 33335764321 1122233343 3 567777777877663 344456765321
Q ss_pred --CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC--cccccceeecCCCEEEEEecCCeEEEEEccCCC
Q 003331 558 --GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKALP 633 (829)
Q Consensus 558 --~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~ 633 (829)
+.+.. .... ..+.+|+.+.++.|+.-+ ..| .-|+..... ..+......+ ++.+|+.+..|.++.-+-.
T Consensus 120 ~~~~~~~-i~~~-~~~~~~~~~~~g~v~~S~-DgG-~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~--- 191 (327)
T 2xbg_A 120 LPGSPRL-IKAL-GNGSAEMITNVGAIYRTK-DSG-KNWQALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEP--- 191 (327)
T ss_dssp CSSCEEE-EEEE-ETTEEEEEETTCCEEEES-STT-SSEEEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECT---
T ss_pred CCCCeEE-EEEE-CCCCEEEEeCCccEEEEc-CCC-CCCEEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCC---
Confidence 22222 2222 235677766666665432 223 335543221 1122233333 3556666666767664311
Q ss_pred ceEEEeeccC--CcceeeeeeeecCCEEEEEeeCCeEEEEcCCCCEEEEeecCC------ceeecCcccccCCCeEEEEe
Q 003331 634 FHTLWLHELE--VPAFASLCITSANRHVICCLVDGHVVALDSSGSIIWRCRTGG------PIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 634 g~~~w~~~~~--~~~~~s~~~~~~~~~l~~~~~~g~i~~~d~~g~~~w~~~~~~------~~~~~~~~~~~~~~~i~~~t 705 (829)
|...|+.... ...+....+. .++.+|+.+.+|.++..+.++-..|+..... .+.. +....++.+|+.+
T Consensus 192 gG~tW~~~~~~~~~~~~~~~~~-~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~---v~~~~~~~~~~~g 267 (327)
T 2xbg_A 192 GQTAWEPHNRTTSRRLHNMGFT-PDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD---LAYRTPNEVWLAG 267 (327)
T ss_dssp TCSSCEEEECCSSSCEEEEEEC-TTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE---EEESSSSCEEEEE
T ss_pred CCCceeECCCCCCCccceeEEC-CCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEE---EEecCCCEEEEEe
Confidence 2334543211 1122333333 3567788877777666534444556642211 1111 1123356788888
Q ss_pred eCCeEEEEeCCCCcEEEEEec-C----CccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 706 RNGSIYSFEQESGNLLWEYSV-G----DPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 706 ~~g~l~~~d~~tG~~~w~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.+|.++. ..+.| ..|+... . ..++...+. .++.+|+...+|.|+.++.
T Consensus 268 ~~g~i~~-S~DgG-~tW~~~~~~~~~~~~~~~v~~~-------------~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 268 GAGALLC-SQDGG-QTWQQDVDVKKVPSNFYKILFF-------------SPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp STTCEEE-ESSTT-SSCEECGGGTTSSSCCCEEEEE-------------ETTEEEEECSTTEEEEECC
T ss_pred CCCeEEE-eCCCC-cccEEcCccCCCCCCeEEEEEE-------------CCCceEEEcCCceEEEEcC
Confidence 7887743 33444 4676432 1 111111111 2567888888998887653
|
| >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00028 Score=56.94 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcccCc----------ceeccCCCccccCCChHHHHHHHHHc----C--Cc---chhhhcCCCHHHHHHHH
Q 003331 290 LLQVIRKAFGHALMV----------EEVLHHDNFFTMGGNSIAAAHVAHNL----G--ID---MRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~----------~~i~~~~~Ff~lGgdSl~a~~l~~~l----~--~~---~~~~~~~pt~~~la~~l 350 (829)
+...+.+++++.++. +.+.++++|.++|.|||.+++|...| + ++ ...+..++|+..|+.++
T Consensus 5 i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~~i 84 (92)
T 1fh1_A 5 LTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAV 84 (92)
T ss_dssp CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC-----------------CTTTSTHHH
T ss_pred HHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHHHH
Confidence 345566666666653 26889999999999999999988765 3 45 45678999999999998
Q ss_pred Hhhc
Q 003331 351 LEKK 354 (829)
Q Consensus 351 ~~~~ 354 (829)
.+..
T Consensus 85 ~~~~ 88 (92)
T 1fh1_A 85 RGLL 88 (92)
T ss_dssp HC--
T ss_pred HHHh
Confidence 7654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.62 Score=46.83 Aligned_cols=126 Identities=10% Similarity=0.119 Sum_probs=63.6
Q ss_pred CcEEEEECCCCcEEEEEEcC--CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEecC--Ceee-eeee
Q 003331 496 HKFICADAKRSSVLWEIKLE--GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQTC--GEVK-CQPV 565 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~--~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~~~--~~~~-~~~~ 565 (829)
..+++||+.+.+ |+.-.. ..-....+...++...++|..+ ..+++||+.+.+ |+.... .... ...+
T Consensus 77 ~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~ 152 (302)
T 2xn4_A 77 RTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFHVAPMNTRRSSVGVG 152 (302)
T ss_dssp CCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEEECCCSSCCBSCEEE
T ss_pred cceEEECCCCCc--eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--EeecCCCCCcccCceEE
Confidence 358999998775 764322 1111122223344444456544 358899987664 654321 1111 1122
Q ss_pred eecCCCEEEE-ecc-------CCeEEEEEcCCCeEEEeecc--CCccc-ccceeecCCCEEEEEe-c-----CCeEEEEE
Q 003331 566 VDAPRQLIWC-GSH-------DHNLYALDFRNYRCVYKLPC--GGSIF-GSPAIDEVHDVLYVAS-T-----SGRLTAIS 628 (829)
Q Consensus 566 ~~~~~~~i~~-gs~-------~g~l~~~d~~tg~~~w~~~~--~~~~~-~~~~~~~~~~~l~v~t-~-----~g~l~~~~ 628 (829)
+. ++.||+ |+. ...+++||+.+++ |+... ..... .+.+.. ++.||+.. . ...++.||
T Consensus 153 ~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 226 (302)
T 2xn4_A 153 VV--GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYD 226 (302)
T ss_dssp EE--TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEE
T ss_pred EE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEe
Confidence 22 345555 432 2458999998864 55422 11111 122233 36666543 2 23689999
Q ss_pred ccC
Q 003331 629 VKA 631 (829)
Q Consensus 629 ~~~ 631 (829)
+.+
T Consensus 227 ~~~ 229 (302)
T 2xn4_A 227 PTT 229 (302)
T ss_dssp TTT
T ss_pred CCC
Confidence 886
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=1.4 Score=45.43 Aligned_cols=139 Identities=12% Similarity=0.197 Sum_probs=75.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcE-EEEEe--cCC-eeeeeeeeecC---CCEEEEeccC--------CeEEEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDI-YWTFQ--TCG-EVKCQPVVDAP---RQLIWCGSHD--------HNLYAL 585 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~-~w~~~--~~~-~~~~~~~~~~~---~~~i~~gs~~--------g~l~~~ 585 (829)
.+++.++ +.+|+...++.|+.+| .+|+. +-.+. ..+ .-....++.++ ++.||+.... ..|+.+
T Consensus 33 ~ia~~pd-G~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~ 110 (354)
T 3a9g_A 33 SIAPLGG-GRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRG 110 (354)
T ss_dssp EEEEEET-TEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEE
T ss_pred EEEEcCC-CeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEE
Confidence 4556666 4689988889999998 56761 11111 111 11223345544 6788886542 578888
Q ss_pred EcCCC-------eEEEe-eccC-CcccccceeecCCCEEEEEecC--------------CeEEEEEccCCC-------ce
Q 003331 586 DFRNY-------RCVYK-LPCG-GSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVKALP-------FH 635 (829)
Q Consensus 586 d~~tg-------~~~w~-~~~~-~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~~~~-------g~ 635 (829)
+...+ +.+.. +... ......+.+.+ ++.||++..+ |.|+.++++... ..
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 111 RLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 87654 12222 2211 11234455655 5678887532 578888876310 12
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEee
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCLV 664 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~~ 664 (829)
.+|......+ ...++.++.+.+|++..
T Consensus 190 ~i~a~G~rnp--~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 190 PIWSYGHRNP--QGIDWHRASGVMVATEH 216 (354)
T ss_dssp CEEEECCSCC--CEEEECTTTCCEEEEEC
T ss_pred cEEEEccCCc--ceEEEeCCCCCEEEEec
Confidence 4555444332 23445554677888764
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.32 Score=55.33 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=66.5
Q ss_pred EEEEECCCCcEEEEE--EcCCceeeceEEee-CCcEEEEEEeCC-----------EEEEEEcCCCcEEE--EEecCCeee
Q 003331 498 FICADAKRSSVLWEI--KLEGRIECSAAVLA-DFSQVVVGCYKG-----------KIYFLDYLTGDIYW--TFQTCGEVK 561 (829)
Q Consensus 498 l~~~d~~tg~~~w~~--~~~~~~~~~~~~~~-~~~~v~vg~~dg-----------~l~~~d~~tG~~~w--~~~~~~~~~ 561 (829)
+.++|+.+++ |.. +++. .....++.. ++..+++|+.+. .+++||+.+++-.- .........
T Consensus 168 ~~~~dp~~~~--W~~~~~~P~-~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 244 (656)
T 1k3i_A 168 YTAPQPGLGR--WGPTIDLPI-VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 244 (656)
T ss_dssp CCCCCTTSCE--EEEEEECSS-CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred cccCCCCCCe--eeeeccCCC-CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc
Confidence 5567777665 753 2332 122344444 544455555432 58899998876321 111111111
Q ss_pred e-eeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeeccC--Cc-ccccceeecCCCEEEE-Ee-cC-----CeEEEEEc
Q 003331 562 C-QPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPCG--GS-IFGSPAIDEVHDVLYV-AS-TS-----GRLTAISV 629 (829)
Q Consensus 562 ~-~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~--~~-~~~~~~~~~~~~~l~v-~t-~~-----g~l~~~~~ 629 (829)
+ ..++..++..+.+|+. +..+++||+.++ .|..... .. ...+.+... ++.||+ |. .+ ..+.+||+
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence 2 1233334455555653 457999999987 4654321 11 112223332 244554 44 22 45889998
Q ss_pred cCCCceEEEee
Q 003331 630 KALPFHTLWLH 640 (829)
Q Consensus 630 ~~~~g~~~w~~ 640 (829)
.+ . .|..
T Consensus 322 ~t--~--~W~~ 328 (656)
T 1k3i_A 322 SS--K--TWTS 328 (656)
T ss_dssp TT--T--EEEE
T ss_pred CC--C--ccee
Confidence 86 3 3664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.027 Score=64.46 Aligned_cols=176 Identities=9% Similarity=0.057 Sum_probs=86.5
Q ss_pred CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCC----CeEEEeeccCCcccccceeecC
Q 003331 537 KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRN----YRCVYKLPCGGSIFGSPAIDEV 611 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~t----g~~~w~~~~~~~~~~~~~~~~~ 611 (829)
.+.|+.+++.+++.......... .....++...+.||+... .+.|+.+++.+ ................++++..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~-p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRN-VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTT-CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeeccCcc-eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35678888776655432222111 223345555677887643 46789998764 1111111111111123445534
Q ss_pred CCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecCCcee
Q 003331 612 HDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTGGPIF 688 (829)
Q Consensus 612 ~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~~~~~ 688 (829)
++.||++. ..+.|.+++++. ................+++.+.++.||+.... +.|+.++.+|...-.+.. .. +
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg--~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~-~~-l 539 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKG--VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-EN-I 539 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSS--CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC-SS-C
T ss_pred CCcEEEEeccCCeEEEEecCC--CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe-CC-C
Confidence 56777764 356788888774 22222221111111334555556777776542 678887744433211111 11 1
Q ss_pred ecC-ccccc-CCCeEEEEe-eCCeEEEEeCCC
Q 003331 689 AGP-CTSFA-LPSQVLICS-RNGSIYSFEQES 717 (829)
Q Consensus 689 ~~~-~~~~~-~~~~i~~~t-~~g~l~~~d~~t 717 (829)
..| .+..+ .++.||+.. ..+.|+.++...
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 112 12222 246777764 456788888753
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.084 Score=55.07 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=88.6
Q ss_pred eceEEeeCCcEEEEEEeCCEEEEEEcCCCc-----------EEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcC
Q 003331 520 CSAAVLADFSQVVVGCYKGKIYFLDYLTGD-----------IYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR 588 (829)
Q Consensus 520 ~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~-----------~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~ 588 (829)
....+++..+.+++|+.+ ++++|+.++.+ ..+....+. +. ...+ ++..++++ .++.|..||..
T Consensus 41 nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp BCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE--CCCEEEEE-cCCcEEEEEch
Confidence 355677778888888866 46668765443 224555555 43 3344 56888888 78899999987
Q ss_pred CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeE
Q 003331 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 589 tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i 668 (829)
+-................... ...+.+.+.+|.|+.||+++ +...- . .....+.+.++++ +.+|..+|.+
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~--~p~~av~~~dG~L~v~dl~~--~~~~~---~-~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNV--NNTLVILNSVNDLSALDLRT--KSTKQ---L-AQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp STTCEEEEEECSSCEEEEEEC--SSEEEEEETTSEEEEEETTT--CCEEE---E-EESEEEEEECSSE--EEEEETTSCE
T ss_pred hhhccCccceeecceeeEEec--CCCEEEEECCCCEEEEEccC--Ccccc---c-cCCceEEEEcCCc--eEEEEcCCcE
Confidence 654433332221111221111 23488889999999999987 54332 1 1233555666554 7889999999
Q ss_pred EEEc-CCCC
Q 003331 669 VALD-SSGS 676 (829)
Q Consensus 669 ~~~d-~~g~ 676 (829)
..|+ ..+.
T Consensus 185 ~~~~~~~~~ 193 (388)
T 1xip_A 185 QSFAWRNGE 193 (388)
T ss_dssp EEEEEETTE
T ss_pred EEEcCCCcc
Confidence 9999 5554
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=1.7 Score=44.73 Aligned_cols=62 Identities=8% Similarity=-0.063 Sum_probs=39.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC---CcEEEEEEeC--------CEEEEEEcCCC
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD---FSQVVVGCYK--------GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~---~~~v~vg~~d--------g~l~~~d~~tG 548 (829)
.++.||++...|.|+.+| .+|+... ...+ ..-....++.++ ++.||+.... +.|++++...+
T Consensus 38 pdG~l~V~e~~g~I~~~d-~~G~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~ 115 (354)
T 3a9g_A 38 GGGRYLVTERPGRLVLIS-PSGKKLV-ASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGS 115 (354)
T ss_dssp ETTEEEEEETTTEEEEEC-SSCEEEE-EECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSS
T ss_pred CCCeEEEEeCCCEEEEEe-CCCceEe-eccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCC
Confidence 467899999999999998 4576111 1111 111224456555 5789987653 67999987654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.89 Score=46.96 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=34.2
Q ss_pred CEEEE-ec-cCCeEEEEEcCCCeEEEeeccCCc----ccccceeecCCCEEEEEe-c----------CCeEEEEEccCCC
Q 003331 571 QLIWC-GS-HDHNLYALDFRNYRCVYKLPCGGS----IFGSPAIDEVHDVLYVAS-T----------SGRLTAISVKALP 633 (829)
Q Consensus 571 ~~i~~-gs-~~g~l~~~d~~tg~~~w~~~~~~~----~~~~~~~~~~~~~l~v~t-~----------~g~l~~~~~~~~~ 633 (829)
+.||+ |+ ....+++||+.+....|+.-..-. ...+.+.. ++.||+.. . ...+++||+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~-- 95 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT-- 95 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT--
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC--
Confidence 44554 33 234699999876555676433211 11122233 36666632 2 13588999886
Q ss_pred ceEEEee
Q 003331 634 FHTLWLH 640 (829)
Q Consensus 634 g~~~w~~ 640 (829)
. .|..
T Consensus 96 ~--~W~~ 100 (357)
T 2uvk_A 96 N--SWVK 100 (357)
T ss_dssp T--EEEE
T ss_pred C--cEEE
Confidence 3 4654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.84 E-value=4.8 Score=48.58 Aligned_cols=124 Identities=10% Similarity=0.134 Sum_probs=73.6
Q ss_pred cccccccccccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEE--EEEEcCCceeeceEEee------CCcEEEEEEe
Q 003331 465 LWKVHMESCVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVLA------DFSQVVVGCY 536 (829)
Q Consensus 465 ~W~~~~~~~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~------~~~~v~vg~~ 536 (829)
.|..+.++.|..+.+ .+..|.+++ ++.+..+...++++. -+..++..+ ++..+.+ ....+.+|++
T Consensus 507 ~w~~p~~~~I~~As~-----n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~ev-scl~i~~~~~~~~~s~~~aVg~~ 579 (1158)
T 3ei3_A 507 EWKEPQAKNISVASC-----NSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEV-ACLDITPLGDSNGLSPLCAIGLW 579 (1158)
T ss_dssp EECCTTCCCCCEEEE-----CSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCE-EEEECCCCSSSTTCCSEEEEEET
T ss_pred EEECCCCCEEEEEEe-----CCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCce-EEEEeecCCCCcccccEEEEEEC
Confidence 488777666654332 345666665 566777776666432 223344433 2222221 1358999998
Q ss_pred -CCEEEEEEcCCCcEEEEEecCCe--eeeeeeee-cCCCEEEEeccCCeEE--EEEcCCCeEEEe
Q 003331 537 -KGKIYFLDYLTGDIYWTFQTCGE--VKCQPVVD-APRQLIWCGSHDHNLY--ALDFRNYRCVYK 595 (829)
Q Consensus 537 -dg~l~~~d~~tG~~~w~~~~~~~--~~~~~~~~-~~~~~i~~gs~~g~l~--~~d~~tg~~~w~ 595 (829)
|+.+..+++.+-+.++....+.. ..+..+.. ...-++++|..||.+. .+|..+|++.-.
T Consensus 580 ~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~ 644 (1158)
T 3ei3_A 580 TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDR 644 (1158)
T ss_dssp TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccc
Confidence 99999999998888887666542 22211221 1233577888898874 456677776543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.75 Score=52.25 Aligned_cols=94 Identities=10% Similarity=-0.077 Sum_probs=51.8
Q ss_pred cEEEEECCCCcEEEEE--Ec--C-CceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC--Ce-eeeeeeee
Q 003331 497 KFICADAKRSSVLWEI--KL--E-GRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC--GE-VKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~--~~--~-~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~--~~-~~~~~~~~ 567 (829)
.+.+||+.+++ |+. .. . .....+.++..++..+++|.. +..+++||+.++ .|+.... .. ...+.++.
T Consensus 220 ~~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~ 295 (656)
T 1k3i_A 220 LTSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATM 295 (656)
T ss_dssp EEEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEEC
T ss_pred EEEEEeCCCCc--EEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEe
Confidence 58899998886 431 11 1 111112344455555566653 457999998876 5764321 11 11222333
Q ss_pred cCCCEEEEec-cC-----CeEEEEEcCCCeEEEee
Q 003331 568 APRQLIWCGS-HD-----HNLYALDFRNYRCVYKL 596 (829)
Q Consensus 568 ~~~~~i~~gs-~~-----g~l~~~d~~tg~~~w~~ 596 (829)
.++..+.+|+ .+ ..+.+||+.+++ |..
T Consensus 296 ~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~ 328 (656)
T 1k3i_A 296 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTS 328 (656)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEE
T ss_pred cCCeEEEEeCcccCCcccccceEeCCCCCc--cee
Confidence 2345555565 33 468999998875 654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.51 E-value=2.7 Score=43.27 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=42.4
Q ss_pred ceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeC---CcEEEEEEeC------CEEEEE
Q 003331 478 PLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLAD---FSQVVVGCYK------GKIYFL 543 (829)
Q Consensus 478 p~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~---~~~v~vg~~d------g~l~~~ 543 (829)
|.-+.-+.++.+|++...|.|+.++ +|+..-....+ .......++.++ ++.||+.... +.|+.+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 4333334567799999889999998 56532111111 111234556655 5689987653 679999
Q ss_pred EcCCC
Q 003331 544 DYLTG 548 (829)
Q Consensus 544 d~~tG 548 (829)
+..++
T Consensus 111 ~~~~~ 115 (352)
T 2ism_A 111 RHLGE 115 (352)
T ss_dssp EECSS
T ss_pred EeCCC
Confidence 97654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.42 E-value=1.6 Score=50.34 Aligned_cols=151 Identities=9% Similarity=0.084 Sum_probs=82.0
Q ss_pred eceEEe-eCCcEEEEEEeC-C----EEEEEEcCCC-cEEEEEecCCeeeeeeeeecCCCEEEEeccC-----CeEEEEEc
Q 003331 520 CSAAVL-ADFSQVVVGCYK-G----KIYFLDYLTG-DIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD-----HNLYALDF 587 (829)
Q Consensus 520 ~~~~~~-~~~~~v~vg~~d-g----~l~~~d~~tG-~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~-----g~l~~~d~ 587 (829)
..+.++ +|++.|+..... | .|+.+|+.+| +.+-. .. ......+.+.+++..|++.+.+ ..|+.++.
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 456788 888876655442 2 4999999999 63210 00 1123456666666666666554 35888888
Q ss_pred CCCe----EEEeeccCCcccccceeecCCCEEEEEec---CCeEEEEEccCCCceE--EEeeccCCcceeeeeeeecCCE
Q 003331 588 RNYR----CVYKLPCGGSIFGSPAIDEVHDVLYVAST---SGRLTAISVKALPFHT--LWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 588 ~tg~----~~w~~~~~~~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~g~~--~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
.+++ .++... .......+.+++++..|++.+. ...|+.+|+++..++. .-..........++.. ..++.
T Consensus 255 gt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~~g~~ 332 (751)
T 2xe4_A 255 GKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-HGTSH 332 (751)
T ss_dssp TSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-ETTTE
T ss_pred CCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-eeCCE
Confidence 7763 333321 1223445667777777776653 3468888887621222 1111111111111111 23677
Q ss_pred EEEEeeC-----CeEEEEc-CC
Q 003331 659 VICCLVD-----GHVVALD-SS 674 (829)
Q Consensus 659 l~~~~~~-----g~i~~~d-~~ 674 (829)
+++.+.. ..|+.++ .+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTS
T ss_pred EEEEeCCCCCCCcEEEEEcCCC
Confidence 7766543 2678887 44
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.28 E-value=2.7 Score=42.01 Aligned_cols=212 Identities=11% Similarity=0.071 Sum_probs=113.3
Q ss_pred CCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeC--------------CEEEEEEcCCC
Q 003331 485 SDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYK--------------GKIYFLDYLTG 548 (829)
Q Consensus 485 ~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d--------------g~l~~~d~~tG 548 (829)
+++.||... .++.|+.++.. |....++... . ...+..+++.||..... ..||.++...+
T Consensus 24 ~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 24 SDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp ETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred eCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 467777764 35679999975 4433333221 1 23455667777776543 47899997665
Q ss_pred cEEEEEecCCeeeeeeeeecCCCEEEEec----cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec-CCe
Q 003331 549 DIYWTFQTCGEVKCQPVVDAPRQLIWCGS----HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST-SGR 623 (829)
Q Consensus 549 ~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~-~g~ 623 (829)
+. ......... .+...++.||... .+..||..+..... ..++..... +.++.+++.||.... ...
T Consensus 99 ~~-~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~~ 168 (302)
T 3s25_A 99 GS-TVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNGQ 168 (302)
T ss_dssp CC-EEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTCC
T ss_pred cc-eEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCce
Confidence 43 223222111 2222456777664 34578999876433 222222211 122444678887765 568
Q ss_pred EEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC--CeEEEEcCCCCEEEEeecCCceeecCcccccCCCeE
Q 003331 624 LTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVD--GHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQV 701 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~--g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i 701 (829)
|++.+++. +.. .... ..+.. . .+.++++.++..... ..|+..+.+|.....+... .+ +.+.. .++.|
T Consensus 169 Iy~~~l~g--~~~-~~l~-~~~~~-~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~-~~---~~~~~-~g~~I 237 (302)
T 3s25_A 169 LYRYDTAS--QSE-ALFY-DCNCY-K-PVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA-NI---EHYNV-YGSLI 237 (302)
T ss_dssp EEEEETTT--TEE-EEEE-CSCEE-E-EEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS-CE---EEEEE-ETTEE
T ss_pred EEEEECCC--CCE-EEEe-CCCcc-c-eeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC-Cc---ceEEE-CCCEE
Confidence 99999875 332 2221 12221 2 244678888877654 3688888444433333221 11 11111 25567
Q ss_pred EEEee--CCeEEEEeCCCCcEEEE
Q 003331 702 LICSR--NGSIYSFEQESGNLLWE 723 (829)
Q Consensus 702 ~~~t~--~g~l~~~d~~tG~~~w~ 723 (829)
|..+. .+.|+..+.+ |.....
T Consensus 238 y~~~~~~~~~i~~~~~D-G~~r~~ 260 (302)
T 3s25_A 238 FYQRGGDNPALCVVKND-GTGFKE 260 (302)
T ss_dssp EEEECSSSCEEEEEETT-SCCCEE
T ss_pred EEEECCCCcEEEEEECC-CCccEE
Confidence 76532 4678888864 543333
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.09 E-value=1.6 Score=50.41 Aligned_cols=132 Identities=9% Similarity=-0.011 Sum_probs=74.3
Q ss_pred cEEEEECCCC-cEEEEEEcCCceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcE--EEEEe-cCCeeeeeeeee
Q 003331 497 KFICADAKRS-SVLWEIKLEGRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDI--YWTFQ-TCGEVKCQPVVD 567 (829)
Q Consensus 497 ~l~~~d~~tg-~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~--~w~~~-~~~~~~~~~~~~ 567 (829)
.|+.+|+.+| +.+-. .+. ....++.+++|++.|+....+ ..||.+++.++.. .-.+. ........+.++
T Consensus 202 ~l~v~dl~~g~~~l~~-~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S 279 (751)
T 2xe4_A 202 TIEFKRISDPSQTIAD-KVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA 279 (751)
T ss_dssp EEEEEETTCTTCCCCC-CEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEeCCc-ccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence 4999999998 63210 011 123367788888777777665 3699999887741 12222 122334556677
Q ss_pred cCCCEEEEecc---CCeEEEEEcCCCe--E--EEeeccCCcccccceeecCCCEEEEEecC-----CeEEEEEccC
Q 003331 568 APRQLIWCGSH---DHNLYALDFRNYR--C--VYKLPCGGSIFGSPAIDEVHDVLYVASTS-----GRLTAISVKA 631 (829)
Q Consensus 568 ~~~~~i~~gs~---~g~l~~~d~~tg~--~--~w~~~~~~~~~~~~~~~~~~~~l~v~t~~-----g~l~~~~~~~ 631 (829)
+++..|++.+. ...|+.+|..+++ . .-..........++.. ..++.+|+.+.. ..|+.++.++
T Consensus 280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-HGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-ETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-eeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 77777776543 3468889988762 2 1111111111111211 125777776543 3688888764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.05 E-value=3.1 Score=42.79 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-----CeeeeeeeeecC---CCEEEEeccC------CeEEEEE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-----GEVKCQPVVDAP---RQLIWCGSHD------HNLYALD 586 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~---~~~i~~gs~~------g~l~~~d 586 (829)
..++.+++ .+|+...++.|+.++ +|+..-..... ..-....++.++ ++.||+.... +.|+.++
T Consensus 35 ~ia~~pdG-~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~ 111 (352)
T 2ism_A 35 ALAFLPDG-GMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLR 111 (352)
T ss_dssp EEEECTTS-CEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEcCCC-eEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEE
Confidence 44555664 588888889999998 55432111111 111223345544 5788887542 5788998
Q ss_pred cCCCe-----EEEe-ecc--C-CcccccceeecCCCEEEEEecC--------------CeEEEEEcc
Q 003331 587 FRNYR-----CVYK-LPC--G-GSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVK 630 (829)
Q Consensus 587 ~~tg~-----~~w~-~~~--~-~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~ 630 (829)
...++ .+.. +.. . ......+.+++ ++.||++..+ |.|+.++++
T Consensus 112 ~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~d 177 (352)
T 2ism_A 112 HLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPE 177 (352)
T ss_dssp ECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTT
T ss_pred eCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCC
Confidence 77542 2222 221 1 12224556665 4689987632 678888765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=93.84 E-value=15 Score=44.27 Aligned_cols=140 Identities=20% Similarity=0.126 Sum_probs=80.7
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE--EEEecCCeeeeeeeeec-----C
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY--WTFQTCGEVKCQPVVDA-----P 569 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~--w~~~~~~~~~~~~~~~~-----~ 569 (829)
.|..++...++.+..+..+.......+... +..|++.+ ++.++.+...+|++. -+.+...++.+..+... .
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n-~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN-SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC-SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC-CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 377777765555533343332111222222 35677775 778888776666532 22334445443322211 1
Q ss_pred CCEEEEecc-CCeEEEEEcCCCeEEEeeccCCc-ccccceee--cCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 570 RQLIWCGSH-DHNLYALDFRNYRCVYKLPCGGS-IFGSPAID--EVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 570 ~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~--~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
...+.+|.+ |+.+..++..+-+.++....+.. ...+.++. +..-++++|..+|.+..+..+..+|+..-
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d 643 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSD 643 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEE
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCcccc
Confidence 367888997 89999999998888887766442 11222222 11236788999998877766544465543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.39 E-value=5.6 Score=40.79 Aligned_cols=141 Identities=13% Similarity=0.195 Sum_probs=71.6
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEe-c-----CC-eeeeeeeeecC---CCEEEEecc--------CCeE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQ-T-----CG-EVKCQPVVDAP---RQLIWCGSH--------DHNL 582 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~-~-----~~-~~~~~~~~~~~---~~~i~~gs~--------~g~l 582 (829)
..++.+++..+|+....|.|+.++. +|+..-.+. . .+ .-....++.++ ++.||+... ...|
T Consensus 22 ~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v 100 (353)
T 2g8s_A 22 ALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV 100 (353)
T ss_dssp EEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred EEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence 4455555433888888888998884 454321111 0 00 00122334433 577887632 2357
Q ss_pred EEEEcCCC--e-----EEEee-cc---CCcccccceeecCCCEEEEEecC--------------CeEEEEEccCCC----
Q 003331 583 YALDFRNY--R-----CVYKL-PC---GGSIFGSPAIDEVHDVLYVASTS--------------GRLTAISVKALP---- 633 (829)
Q Consensus 583 ~~~d~~tg--~-----~~w~~-~~---~~~~~~~~~~~~~~~~l~v~t~~--------------g~l~~~~~~~~~---- 633 (829)
..++...+ + .++.. .. .......+.+.+ ++.||++..+ |.|+.++++...
T Consensus 101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 77765432 1 12211 11 112223455655 5689998643 579999876310
Q ss_pred --------ceEEEeeccCCcceeeeeeeecCCEEEEEeeC
Q 003331 634 --------FHTLWLHELEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 634 --------g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
...+|......+ ...++.+..+.+|++...
T Consensus 180 pf~~~~~~~~~i~a~G~rnp--~gl~~d~~~g~l~~~d~g 217 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGIRNP--QGMAMNPWSNALWLNEHG 217 (353)
T ss_dssp TTTTSTTSCTTEEEECCSEE--EEEEEETTTTEEEEEEEC
T ss_pred CCcCCCCCCccEEEEcCcCc--cceEEECCCCCEEEEecC
Confidence 123444333222 234455446788887654
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.69 E-value=13 Score=40.14 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=93.2
Q ss_pred cccccccccccccc-----ccceEEeeCC--CeEEEEecCCCc----------------------------EEEEECCCC
Q 003331 462 IQELWKVHMESCVD-----ASPLVVLKDS--DIYLFVGSHSHK----------------------------FICADAKRS 506 (829)
Q Consensus 462 ~~~~W~~~~~~~~~-----~sp~v~~~d~--~~~l~igs~~g~----------------------------l~~~d~~tg 506 (829)
.+.+|+.+++..+. .++.|.--|. ..-|++.+.+|. |.++|-.||
T Consensus 164 G~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG 243 (620)
T 2zuy_A 164 GTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETG 243 (620)
T ss_dssp SCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTC
T ss_pred CCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCc
Confidence 56778888765443 2444442222 336777666543 689999999
Q ss_pred cEEEEEEcC-Ccee--------------eceEEe-eCCc--EEEEEE-e--CCEEEEEEcCCCc--EEEEEecCCe----
Q 003331 507 SVLWEIKLE-GRIE--------------CSAAVL-ADFS--QVVVGC-Y--KGKIYFLDYLTGD--IYWTFQTCGE---- 559 (829)
Q Consensus 507 ~~~w~~~~~-~~~~--------------~~~~~~-~~~~--~v~vg~-~--dg~l~~~d~~tG~--~~w~~~~~~~---- 559 (829)
+.+++.+.. .+-. ..+.+. -++. .++++- + ...|.+||..+++ .+|.+.....
T Consensus 244 ~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~ 323 (620)
T 2zuy_A 244 EALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEA 323 (620)
T ss_dssp CEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGG
T ss_pred ceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccc
Confidence 999987752 1100 011111 1222 233321 1 2468899988885 5899876421
Q ss_pred ----eeeeeeeec----CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-CcccccceeecC-CC-EEEEEecC----CeE
Q 003331 560 ----VKCQPVVDA----PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-GSIFGSPAIDEV-HD-VLYVASTS----GRL 624 (829)
Q Consensus 560 ----~~~~~~~~~----~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~-~~-~l~v~t~~----g~l 624 (829)
-...+.+.+ ...-|++|+ .++| .+|+.+|....+ +.....--++++ .+ .+|....+ ...
T Consensus 324 ~~gqg~H~~svaDVDGDG~dEIv~Gs-----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~~~~E~~~~~~G~ 397 (620)
T 2zuy_A 324 YAGQGNHSLSVADVDGDGKDEIIYGA-----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGL 397 (620)
T ss_dssp GTTCCCSSCEEECCSSSSSCEEEETT-----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEEEECCCTTSSCSE
T ss_pred cccccCcCceEEecCCCCceeEEEee-----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEEEEecCCCCCCce
Confidence 011222221 223355554 3566 789999987652 111110111221 12 45554432 246
Q ss_pred EEEEccCCCceEEEeeccC
Q 003331 625 TAISVKALPFHTLWLHELE 643 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~ 643 (829)
..+|..+ |+.+|.....
T Consensus 398 ~~~DA~t--G~vlw~~~~~ 414 (620)
T 2zuy_A 398 SLRDAGT--GEILWGVHAG 414 (620)
T ss_dssp EEEETTT--CCEEEEECCS
T ss_pred EEEECCC--CcEEEEecCc
Confidence 6788887 9999998653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=5.1 Score=45.60 Aligned_cols=28 Identities=4% Similarity=-0.060 Sum_probs=22.4
Q ss_pred HHHcCCcchhhhcCCCHHHHHHHHHhhc
Q 003331 327 AHNLGIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 327 ~~~l~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+..+.++..++.+|++...+..+.+..
T Consensus 273 ~~~~g~~l~~~~~~~~~~~~~~~~~~~G 300 (695)
T 2zwa_A 273 FKRNDSPLQSVLKYNTIESQVQRFNKLG 300 (695)
T ss_dssp HHHTTCCCCGGGTCCSHHHHHHHHHHTT
T ss_pred HHHcCCCCCccccCCCHHHHHHHHHHCC
Confidence 4456788999999999999988887653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.69 Score=43.20 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=39.8
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCC-CeEEEeec---c---CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRN-YRCVYKLP---C---GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~t-g~~~w~~~---~---~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
.+.+ ++.||.. .+|.||..++.+ +...|.-. . +-..+....++. ++.||+. .+|.||.+++-+ ++..-
T Consensus 47 af~P-~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav-~dG~iyr~~pP~-~~~~~ 121 (236)
T 1tl2_A 47 FLSP-GGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV-SKDKLYKASPPQ-SDTDN 121 (236)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE-ETTEEEEESCCC-STTCC
T ss_pred EECC-CccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe-CCCEEEEeCCCc-CCCCc
Confidence 3443 5667766 667777777644 22222111 0 111234455554 6778888 569999998643 25556
Q ss_pred Eeec
Q 003331 638 WLHE 641 (829)
Q Consensus 638 w~~~ 641 (829)
|...
T Consensus 122 Wl~~ 125 (236)
T 1tl2_A 122 WIAR 125 (236)
T ss_dssp HHHH
T ss_pred eecc
Confidence 6543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=91.08 E-value=16 Score=37.98 Aligned_cols=211 Identities=11% Similarity=0.148 Sum_probs=107.6
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCeeeeeee----eecC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEVKCQPV----VDAP 569 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~~~~~~----~~~~ 569 (829)
...|..||+.+.+.+-.+.....+..-.-+++. .+-.-+ +..||.|+... -.+..-|+-+.....+.+ .+.+
T Consensus 85 g~~lQiFnle~K~klks~~~~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT--EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEchHHhhhhcceecCCCceEEEecCCC--eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCC
Confidence 467999999988877777766654332233322 343333 56799999753 245544544332211111 1222
Q ss_pred CCE-EEEe--ccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCC--CEEEEEe-c---CCeEEEEEccCC-Cce
Q 003331 570 RQL-IWCG--SHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH--DVLYVAS-T---SGRLTAISVKAL-PFH 635 (829)
Q Consensus 570 ~~~-i~~g--s~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~--~~l~v~t-~---~g~l~~~~~~~~-~g~ 635 (829)
.+. +++| ..+ |.+..|+.+.+. -..++.+...+.+..++++. ..|++-. . .+.+.++++... .|.
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~ 240 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC
T ss_pred CCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC
Confidence 222 2222 112 334444433321 11112222222222222211 1233322 2 267888887542 122
Q ss_pred EEE---eecc--C----CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe
Q 003331 636 TLW---LHEL--E----VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 636 ~~w---~~~~--~----~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t 705 (829)
... ..+. . .....+..++...+.+|+-|..|.++.|| .+|..++...... +.+++++
T Consensus 241 ~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~-------------~~iF~t~ 307 (494)
T 1bpo_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-------------ETIFVTA 307 (494)
T ss_dssp CCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-------------SCEEEEE
T ss_pred CCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccC-------------CceEEec
Confidence 111 1111 1 11224556777889999999999999999 9999988765332 2344443
Q ss_pred e---CCeEEEEeCCCCcEEEE
Q 003331 706 R---NGSIYSFEQESGNLLWE 723 (829)
Q Consensus 706 ~---~g~l~~~d~~tG~~~w~ 723 (829)
. .+++.+++ +.|+++..
T Consensus 308 ~~~~~~Gi~~Vn-r~GqVl~v 327 (494)
T 1bpo_A 308 PHEATAGIIGVN-RKGQVLSV 327 (494)
T ss_dssp EETTTTEEEEEE-TTCEEEEE
T ss_pred ccCCCCcEEEEc-cCceEEEE
Confidence 2 46677777 55766543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=2.1 Score=40.03 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=42.2
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCC-CcEEEEEecCCee------eeeeeeecCCCEEEEeccCCeEEEEEcC-CCeE
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLT-GDIYWTFQTCGEV------KCQPVVDAPRQLIWCGSHDHNLYALDFR-NYRC 592 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~t-G~~~w~~~~~~~~------~~~~~~~~~~~~i~~gs~~g~l~~~d~~-tg~~ 592 (829)
...+.++ +.||+. .+|.||..+..+ +...|.- ....+ ....++.+.++.||+. .||.||.+++. ++.-
T Consensus 45 ~laf~P~-G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~ 120 (236)
T 1tl2_A 45 FLFLSPG-GELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD 120 (236)
T ss_dssp EEEECTT-SCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC
T ss_pred eEEECCC-ccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC
Confidence 4456664 568877 788999999855 3334421 11111 1133455567888988 56999999863 3444
Q ss_pred EE
Q 003331 593 VY 594 (829)
Q Consensus 593 ~w 594 (829)
-|
T Consensus 121 ~W 122 (236)
T 1tl2_A 121 NW 122 (236)
T ss_dssp CH
T ss_pred ce
Confidence 44
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=16 Score=41.41 Aligned_cols=130 Identities=11% Similarity=0.110 Sum_probs=67.0
Q ss_pred CcEEEEECCCCcEEEEEEc-C-------C-ceeeceEEee-CCcEEEEEEeC------CEEEEEEcCCCcEEEEEecCC-
Q 003331 496 HKFICADAKRSSVLWEIKL-E-------G-RIECSAAVLA-DFSQVVVGCYK------GKIYFLDYLTGDIYWTFQTCG- 558 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~-~-------~-~~~~~~~~~~-~~~~v~vg~~d------g~l~~~d~~tG~~~w~~~~~~- 558 (829)
..+++||+.+++ |+.-. . . +...+.+... ++..+++|+.+ +.+++||..+. .|+....-
T Consensus 412 ~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~--~W~~~~~~p 487 (695)
T 2zwa_A 412 NEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR--EWSMIKSLS 487 (695)
T ss_dssp CCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT--EEEECCCCS
T ss_pred CcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC--cEEECCCCC
Confidence 458999998876 76332 1 1 1111223332 44444455432 35889998765 57643211
Q ss_pred -eee-eeeeeecCCCEEEEeccCC--eEEEEEcCCCeEEEeeccC-C----cc-ccc-ceeecCCCEEEEEe-c------
Q 003331 559 -EVK-CQPVVDAPRQLIWCGSHDH--NLYALDFRNYRCVYKLPCG-G----SI-FGS-PAIDEVHDVLYVAS-T------ 620 (829)
Q Consensus 559 -~~~-~~~~~~~~~~~i~~gs~~g--~l~~~d~~tg~~~w~~~~~-~----~~-~~~-~~~~~~~~~l~v~t-~------ 620 (829)
... .+.++..++..+++|+.++ .+++||+.+++ |+.... + .. ..+ .++..+.+.||+.+ .
T Consensus 488 ~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~ 565 (695)
T 2zwa_A 488 HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT 565 (695)
T ss_dssp BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC
T ss_pred CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe
Confidence 111 1122212344455565443 69999998865 765332 1 11 112 33344336666643 2
Q ss_pred -CCeEEEEEccC
Q 003331 621 -SGRLTAISVKA 631 (829)
Q Consensus 621 -~g~l~~~~~~~ 631 (829)
...+++||+.+
T Consensus 566 ~~~~v~~yd~~~ 577 (695)
T 2zwa_A 566 VSDKAIIFKYDA 577 (695)
T ss_dssp BCCEEEEEEECT
T ss_pred eeCcEEEEEccC
Confidence 24589999887
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.00 E-value=18 Score=36.84 Aligned_cols=70 Identities=6% Similarity=-0.035 Sum_probs=39.4
Q ss_pred cceEEeeCCCeE-EEEecCCCcEEEEECCCCcEEEEEE-cC------CceeeceEEeeC---CcEEEEEEe--------C
Q 003331 477 SPLVVLKDSDIY-LFVGSHSHKFICADAKRSSVLWEIK-LE------GRIECSAAVLAD---FSQVVVGCY--------K 537 (829)
Q Consensus 477 sp~v~~~d~~~~-l~igs~~g~l~~~d~~tg~~~w~~~-~~------~~~~~~~~~~~~---~~~v~vg~~--------d 537 (829)
.|.-+.-+.+++ ||++...|.|+.++. +|+..-.+. .+ ..-....++.++ ++.||+... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 344443445677 999999999999986 454321010 10 111123455543 568888753 2
Q ss_pred CEEEEEEcCC
Q 003331 538 GKIYFLDYLT 547 (829)
Q Consensus 538 g~l~~~d~~t 547 (829)
..|++++...
T Consensus 98 ~~v~r~~~~~ 107 (353)
T 2g8s_A 98 TAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEECT
T ss_pred eEEEEEEECC
Confidence 3688887653
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.71 E-value=21 Score=35.91 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=90.9
Q ss_pred CeEEEEecCCCcEEEEECCC---------CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCC---------
Q 003331 486 DIYLFVGSHSHKFICADAKR---------SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLT--------- 547 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~t---------g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~t--------- 547 (829)
...+++-|++|.|....+.+ |..--.++-++.+. ..........+++-+..|.+|.+....
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~-~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVA-HFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEE-EEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEE-EEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 44567778889888876432 11100111122222 233334445677677778888776321
Q ss_pred CcEEEE---EecCCeeeeeeeeec--CCCEEEEeccCCeEEEEEcCC-------CeEEEeeccCCcccccceeecCCCEE
Q 003331 548 GDIYWT---FQTCGEVKCQPVVDA--PRQLIWCGSHDHNLYALDFRN-------YRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 548 G~~~w~---~~~~~~~~~~~~~~~--~~~~i~~gs~~g~l~~~d~~t-------g~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
|..+-. +..+..+.....+.+ +...+++.|.+|.+....... |...-++.-+..+.. ......++.|
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~-~~~~~~~d~i 160 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVG-AVLCSAGDDL 160 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEE-EEEECTTCEE
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEE-EEEecCCCEE
Confidence 222111 111233333333332 356788888899888877543 222112221222222 2233345778
Q ss_pred EEEecCCeEEEEEcc--CC-------CceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc
Q 003331 616 YVASTSGRLTAISVK--AL-------PFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672 (829)
Q Consensus 616 ~v~t~~g~l~~~~~~--~~-------~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d 672 (829)
++.|..|.++.+... .- .|...-.+..... ..+......+..+++.+..|.+....
T Consensus 161 ll~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~-Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 161 LLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDR-LLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp EEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCC-EEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred EEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCE-EEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 888999999998876 21 1211111111111 22223333455777888777666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=85.17 E-value=9.2 Score=40.75 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=42.8
Q ss_pred cceEEeeCCCeEEEEecCCC-cEEEEECCCCcEEEEEEcCCce--------eeceEEeeC---CcEEEEEEe--------
Q 003331 477 SPLVVLKDSDIYLFVGSHSH-KFICADAKRSSVLWEIKLEGRI--------ECSAAVLAD---FSQVVVGCY-------- 536 (829)
Q Consensus 477 sp~v~~~d~~~~l~igs~~g-~l~~~d~~tg~~~w~~~~~~~~--------~~~~~~~~~---~~~v~vg~~-------- 536 (829)
.|.-+.-+.+++||++...+ .|+.++..+|+..-...+.... ....++.++ ++.||+...
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 44444344678899998876 6999987777654222222211 113455554 678888764
Q ss_pred -----CCEEEEEEcCC
Q 003331 537 -----KGKIYFLDYLT 547 (829)
Q Consensus 537 -----dg~l~~~d~~t 547 (829)
...|++++...
T Consensus 108 ~~~~~~~~v~r~~~~~ 123 (454)
T 1cru_A 108 KELPNQTIIRRYTYNK 123 (454)
T ss_dssp CCSCEEEEEEEEEEET
T ss_pred cccccccEEEEEEECC
Confidence 24688887543
|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
Probab=84.42 E-value=7.3 Score=32.05 Aligned_cols=86 Identities=13% Similarity=0.190 Sum_probs=48.2
Q ss_pred EEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeee
Q 003331 488 YLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVD 567 (829)
Q Consensus 488 ~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 567 (829)
..+.-..||.+..++...++..|......... +....-..+|.++.+| .+++.+|...+....
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~---------~~~l~l~~dGNLVl~d-~~~~~iW~S~t~~~~------- 88 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQ---------HCFMRLGHSGELDITD-DRLNTVFVSNTVGQE------- 88 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTTSCS---------SCEEEECTTSCEEEEC-TTSCEEEECSCCCSS-------
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCcccCCc---------CEEEEEeCCCcEEEEC-CCCCEEEECCCcCCC-------
Confidence 33334677888888865588999754432110 1111222367777777 467889975542211
Q ss_pred cCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 568 APRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 568 ~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
.....+-..||.+..++ ..+|..
T Consensus 89 --~~~~~~L~~dGnlvly~----~~~W~s 111 (113)
T 3mez_B 89 --GDYVLILQINGQAVVYG----PAVWST 111 (113)
T ss_dssp --SCCEEEECTTSCEEEEC----SEEEES
T ss_pred --CCEEEEEcCCceEEEec----CCEecC
Confidence 11223334567777776 477753
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.28 E-value=43 Score=34.93 Aligned_cols=254 Identities=12% Similarity=0.161 Sum_probs=124.9
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 575 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 575 (829)
..|..+|+.++...-+.+.... +++..+..+.+..-. ...|..||.++...+..+.....+....=+++ ..|-.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~Ad---sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~--~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--NTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCS---EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEET--TEEEE
T ss_pred CeEEEEECCCCCcceecccccc---eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCC--CeEEE
Confidence 3688899988765444444432 456666555555444 77899999999988888877666554433333 44444
Q ss_pred eccCCeEEEEEcCC-CeEEEeeccCCccccc----ceeecCCCEEE-EE--ecC----CeEEEEEccCCCceEEEeeccC
Q 003331 576 GSHDHNLYALDFRN-YRCVYKLPCGGSIFGS----PAIDEVHDVLY-VA--STS----GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 576 gs~~g~l~~~d~~t-g~~~w~~~~~~~~~~~----~~~~~~~~~l~-v~--t~~----g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
-+ +..||-|+... -.+...++.+....+. -..+.+...+. +| ..+ |.+-.|..+. +...-.+.+
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGh 197 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGH 197 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCS
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cccchheee
Confidence 43 34799999753 2455445443332211 12233233322 21 122 2233333332 111111111
Q ss_pred Ccceeeeeeeec--CCEEEE-Eee---CCeEEEEc--C--CCCEEEEeecCCceeecC-------c--ccccCCCeEEEE
Q 003331 644 VPAFASLCITSA--NRHVIC-CLV---DGHVVALD--S--SGSIIWRCRTGGPIFAGP-------C--TSFALPSQVLIC 704 (829)
Q Consensus 644 ~~~~~s~~~~~~--~~~l~~-~~~---~g~i~~~d--~--~g~~~w~~~~~~~~~~~~-------~--~~~~~~~~i~~~ 704 (829)
...|.+..+..+ ...+++ +.. .+.+.+++ . +|...+..+. ..++..| + -.....|.+|+-
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~-vdv~fppe~~~DFPvamqvs~kygviyvi 276 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLI 276 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEE-EECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcccee-eeeeCCcccccCceeEEEecccCCEEEEE
Confidence 112222111100 012222 221 14555555 1 1222111100 0011111 0 012346889999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 705 SRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
|.-|.|+.||..||..++.-.............. ..+|.+.+. ..|.|.....+..
T Consensus 277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~----------~~~Gi~~Vn-r~GqVl~v~v~e~ 332 (494)
T 1bpo_A 277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE----------ATAGIIGVN-RKGQVLSVCVEEE 332 (494)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET----------TTTEEEEEE-TTCEEEEEEECTT
T ss_pred ecCceEEEEecccceeeeeecccCCceEEecccC----------CCCcEEEEc-cCceEEEEEEccc
Confidence 9999999999999999987665443221111111 114444444 7888877766644
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=44 Score=34.23 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=39.8
Q ss_pred CEEEEEEcCCC--cEEEEEecCCee------eeeeeee-c------CCCEEEEecc-CCeEEEEEcCCCeEE
Q 003331 538 GKIYFLDYLTG--DIYWTFQTCGEV------KCQPVVD-A------PRQLIWCGSH-DHNLYALDFRNYRCV 593 (829)
Q Consensus 538 g~l~~~d~~tG--~~~w~~~~~~~~------~~~~~~~-~------~~~~i~~gs~-~g~l~~~d~~tg~~~ 593 (829)
-.|.+||++|+ +++.++..+..+ .....++ . +++.+|+... .+.|..+|.++|+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~sw 194 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSW 194 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEE
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEE
Confidence 36889999999 999998875432 2333444 1 2578888753 578999999998653
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=80.81 E-value=23 Score=37.65 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=17.8
Q ss_pred ceEEeeCCcEEEEEEeCC-EEEEEEcCCCcE
Q 003331 521 SAAVLADFSQVVVGCYKG-KIYFLDYLTGDI 550 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg-~l~~~d~~tG~~ 550 (829)
.+++.+++ .+|++...+ .|++++..+|+.
T Consensus 31 ~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~ 60 (454)
T 1cru_A 31 ALLWGPDN-QIWLTERATGKILRVNPESGSV 60 (454)
T ss_dssp EEEECTTS-CEEEEETTTCEEEEECTTTCCE
T ss_pred EEEEcCCC-cEEEEEcCCCEEEEEECCCCcE
Confidence 34444443 577776665 588887666654
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=80.38 E-value=0.37 Score=46.50 Aligned_cols=63 Identities=6% Similarity=-0.110 Sum_probs=48.2
Q ss_pred cccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCcc------------------CCCCCC-eeeeccccc
Q 003331 373 EDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN------------------LSSVPM-SCSFSRCNK 433 (829)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~------------------~~~~~~-~~s~~~~~~ 433 (829)
+.+++|+|+..++...|..+...|..+..+|.+.-++|+.+..+.. ..|+.| |+|+||.++
T Consensus 13 ~~~lv~lhg~g~~~~~~~~~~~~L~~~~~vi~~Dl~GhG~S~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvGhSmGG~iA 92 (242)
T 2k2q_B 13 KTQLICFPFAGGYSASFRPLHAFLQGECEMLAAEPPGHGTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMIT 92 (242)
T ss_dssp CCEEESSCCCCHHHHHHHHHHHHHCCSCCCEEEECCSSCCSCCCTTTHHHHHHHHTTTTCCCCCCSSCEEECCSSCCHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCCcCCHHHHHHHHHHHHHhhcCCCEEEEeCCHhHHHH
Confidence 3569999999999999999999998877887777777644322111 137888 999999988
Q ss_pred ee
Q 003331 434 VM 435 (829)
Q Consensus 434 ~~ 435 (829)
+.
T Consensus 93 ~~ 94 (242)
T 2k2q_B 93 FR 94 (242)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 829 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-46 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-40 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-40 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 4e-40 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 1e-39 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 5e-31 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-31 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 6e-08 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 1e-06 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 7e-05 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 1e-06 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 1e-06 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 3e-05 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 0.004 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 2e-06 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 6e-05 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 6e-04 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 4e-06 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 5e-06 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 5e-04 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 1e-05 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 1e-05 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 7e-04 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 0.002 | |
| d2gdwa1 | 76 | a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), | 1e-04 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 174 bits (441), Expect = 2e-46
Identities = 57/275 (20%), Positives = 100/275 (36%), Gaps = 27/275 (9%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLF--PNISILNLYGSTEVSG 58
+R ++ SSL++L GE + W+ K +++ + TE G
Sbjct: 357 IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGG 416
Query: 59 DCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLC--L 113
+ LK+ P LV+++ + G +
Sbjct: 417 FMITPLPGAIE-------LKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQ 469
Query: 114 SNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTI 173
+ F + Y N + +GD ARR + G GR D +
Sbjct: 470 ARTLFGDHERFEQTYFSTFKN-------------MYFSGDGARRDEDGYYWITGRVDDVL 516
Query: 174 KINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIK 233
++G R+ EIE L HP + + AVV H + + A++ L + S + ++
Sbjct: 517 NVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVR 576
Query: 234 SWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
+WV ++ P+ + DSLP T SGK+ L
Sbjct: 577 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRIL 611
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (391), Expect = 1e-40
Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 27/265 (10%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
+ H +L+ LV+ G P S+ ++ + + YG TE S K
Sbjct: 279 ESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLE 336
Query: 71 IL--EMSTLKSVPIGLPISNCDIVLVESDT--VKPDE---GEIYAGGLCLSNGYFSESTF 123
L E GLPI + + + + V D GE+ G ++ GY+
Sbjct: 337 SLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 396
Query: 124 MPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALE 183
S +FRTGD A + G + R IK G+ ++
Sbjct: 397 TRSALTP---------------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSV 441
Query: 184 EIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA 243
++E+ L GHP V + AVV+ H +A +V + +K + E + + +
Sbjct: 442 DLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE---ELNEHLLKAGFAKW 498
Query: 244 MIPNRFVFMDSLPMTSSGKVDYASL 268
+P+ +VF + +P TS+GK +L
Sbjct: 499 QLPDAYVFAEEIPRTSAGKFLKRAL 523
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 154 bits (390), Expect = 2e-40
Identities = 55/265 (20%), Positives = 98/265 (36%), Gaps = 32/265 (12%)
Query: 9 QSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRL 68
+ + + S+L + G L + + ++K F I YG TE +
Sbjct: 295 STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL------- 347
Query: 69 PSILEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFM 124
I K +G + + +V+ DT K GE+ G + +GY +
Sbjct: 348 --ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEAT 405
Query: 125 PSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEE 184
+ K + +GD A + + R IK G ++A E
Sbjct: 406 NALIDK---------------DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE 450
Query: 185 IEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL-PLA 243
+E L HP++ D V + A +VL+ KT +E I +V+S++
Sbjct: 451 LESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAK 507
Query: 244 MIPNRFVFMDSLPMTSSGKVDYASL 268
+ VF+D +P +GK+D +
Sbjct: 508 KLRGGVVFVDEVPKGLTGKLDARKI 532
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 155 bits (392), Expect = 4e-40
Identities = 62/280 (22%), Positives = 102/280 (36%), Gaps = 27/280 (9%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGSTEVSG 58
+R++ A S H SL+ L GE + +W+ S+ I I++ Y TE
Sbjct: 344 LRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 403
Query: 59 DCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDT---VKPDEGEIYAGGLCLSN 115
P ++ +K P D V+++ +T + E
Sbjct: 404 HLVT------PLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP 457
Query: 116 GYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKI 175
+ Y+ + N Y+ TGD A + + G + LGR D + +
Sbjct: 458 SFARTIWKNHDRYLDTYLN---------PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNV 508
Query: 176 NGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEI-------F 228
+G R++ EIE + P V + AVV + AF+VLK K + S
Sbjct: 509 SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDI 568
Query: 229 LSSIKSWVSSKLPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
+ V + P + +D LP T SGK+ L
Sbjct: 569 KKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRIL 608
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 151 bits (383), Expect = 1e-39
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 26/261 (9%)
Query: 11 QHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPS 70
+ S++ L+ +G S+ + K ++ +N YG TE + T +
Sbjct: 270 HLDPERILSIQTLITAGSATSPSLVN---KWKEKVTYINAYGPTETTICATTWVAT---- 322
Query: 71 ILEMSTLKSVPIGLPISNCDIVLVESDT--VKPDE-GEIYAGGLCLSNGYFSESTFMPSE 127
+ + SVPIG PI N I +V+ + E GE+ GG L+ GY+ +
Sbjct: 323 --KETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQK 380
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
+V + + ++TGD AR + G++ +LGR D +KI G R+ LEE+E
Sbjct: 381 FVD---------NPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVES 431
Query: 188 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIPN 247
L H + +TAV HK E L A+ V ++ + ++ + S +LP MIP+
Sbjct: 432 ILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQ-----LRQFSSEELPTYMIPS 486
Query: 248 RFVFMDSLPMTSSGKVDYASL 268
F+ +D +P+TS+GK+D L
Sbjct: 487 YFIQLDKMPLTSNGKIDRKQL 507
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 125 bits (315), Expect = 5e-31
Identities = 53/269 (19%), Positives = 94/269 (34%), Gaps = 26/269 (9%)
Query: 1 MRVVLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDC 60
+ + A + SL+ + +G +P ++ + + + P +N+YG+TE
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSL 313
Query: 61 TYFDCKRLPSILEMSTLKSVPIGLPISNCDIVLVESDTVKPDEGEIYAGGLCLSNGYFSE 120
K T + G + + GE + S+ F
Sbjct: 314 YMRQPK---------TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVG 364
Query: 121 STFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRM 180
P + + ++RT D A G + LGR D I G+ +
Sbjct: 365 YLNQPQATAEKLQD------------GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENI 412
Query: 181 ALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV-SSK 239
EIE L P V + V+ Q + A +V + +T S ++ ++ SS+
Sbjct: 413 HPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSE 469
Query: 240 LPLAMIPNRFVFMDSLPMTSSGKVDYASL 268
L P R+ +D LP + KV L
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKVLRRQL 498
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 125 bits (315), Expect = 6e-31
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 33/262 (12%)
Query: 12 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI 71
SSL++L + G + +F + + D + +
Sbjct: 292 SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI--- 348
Query: 72 LEMSTLKSVPIGLPISNCDIVLVESDTVKP----DEGEIYAGGLCLSNGYFSESTFMPSE 127
G P+S D V D + + G + G GY+
Sbjct: 349 ------IVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYY--------- 393
Query: 128 YVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRKDRTIKINGQRMALEEIEH 187
+ + + S ++RTGD R + G +V GR I G+++A EE+E+
Sbjct: 394 ------KAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVEN 447
Query: 188 TLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIP 246
L HP V D A+VS Q FI+ +++ + +K+++ + L IP
Sbjct: 448 HLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAA----ELKAFLRERGLAAYKIP 503
Query: 247 NRFVFMDSLPMTSSGKVDYASL 268
+R F++S P T GKV +L
Sbjct: 504 DRVEFVESFPQTGVGKVSKKAL 525
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 53.8 bits (128), Expect = 6e-08
Identities = 25/203 (12%), Positives = 50/203 (24%), Gaps = 13/203 (6%)
Query: 532 VVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591
G +Y L+ G++ + V VD D
Sbjct: 320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV---RDPEFATRMDHKGT 376
Query: 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLC 651
+ G G + D LY + + + +
Sbjct: 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPN 436
Query: 652 ITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSI 710
+ G + A D ++G W + G + V + +G +
Sbjct: 437 GPTKKEM-------GQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYL 487
Query: 711 YSFEQESGNLLWEYSVGDPITAS 733
+ + + G LW + + S
Sbjct: 488 KALDNKDGKELWNFKMPSGGIGS 510
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 49.6 bits (117), Expect = 1e-06
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597
G+I D TG WT + L+W + D L ALD ++ + ++
Sbjct: 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKELWNFK 502
Query: 598 CGGSIFGSPAIDEVHDVLYVASTSG 622
GSP Y+ S G
Sbjct: 503 MPSGGIGSPMTYSFKGKQYIGSMYG 527
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 44.2 bits (103), Expect = 7e-05
Identities = 31/198 (15%), Positives = 57/198 (28%), Gaps = 25/198 (12%)
Query: 552 WTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV---YKLPCGGSIFGSP 606
W+F T + P+V + + +N YAL+ + + +K S
Sbjct: 44 WSFSTGVLNGHEGAPLV-IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVM 102
Query: 607 AIDEVH-------DVLYVASTSGRLTAI-SVKALPFHTLWLHELEVPAFASLCITSANRH 658
D V + +G L A+ + + + + +V + + A
Sbjct: 103 CCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDT 162
Query: 659 VI------CCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIY 711
V+ V G V A D +G + WR G + G
Sbjct: 163 VLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS----DDSVRLAKDFNSANPHYGQFG 218
Query: 712 SFEQESGNLLWEYSVGDP 729
+ W+ G
Sbjct: 219 LGTKTWEGDAWKIGGGTN 236
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 1e-06
Identities = 32/210 (15%), Positives = 63/210 (30%), Gaps = 23/210 (10%)
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAP------RQLIWCGSHDHNLYA 584
G Y +D G + F + +D R+ +
Sbjct: 339 TAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKH 398
Query: 585 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644
+ GG + A + + YV + W E+
Sbjct: 399 GKAVEVSPPFL---GGKNWNPMAYSQDTGLFYVPANH-----------WKEDYWTEEVSY 444
Query: 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLI 703
++ + G + A+D SG ++W + P++AG + V
Sbjct: 445 TKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAGNLVFT 502
Query: 704 CSRNGSIYSFEQESGNLLWEYSVGDPITAS 733
+ +G +F+ +SG LW++ G I +
Sbjct: 503 GTGDGYFKAFDAKSGKELWKFQTGSGIVSP 532
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.6 bits (117), Expect = 1e-06
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 536 YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595
+ G + +D ++G + W + + + A L++ G+ D A D ++ + ++K
Sbjct: 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWK 522
Query: 596 LPCGGSIFGSPAIDEVHDVLYVASTSG 622
G I P E Y+ T G
Sbjct: 523 FQTGSGIVSPPITWEQDGEQYLGVTVG 549
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 45.3 bits (106), Expect = 3e-05
Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 20/202 (9%)
Query: 498 FICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC 557
F D + I A D +G+ L +
Sbjct: 348 FYVVDRSNGKLQNAFPFVDNITW--ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVS 405
Query: 558 -----GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 612
G+ L + ++ G D+
Sbjct: 406 PPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465
Query: 613 DVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD 672
G L A+ + +W H+ +P +A + + +A V DG+ A D
Sbjct: 466 ---------GSLRAMDPVSGK--VVWEHKEHLPLWAGV-LATAGNLVFTGTGDGYFKAFD 513
Query: 673 S-SGSIIWRCRTGGPIFAGPCT 693
+ SG +W+ +TG I + P T
Sbjct: 514 AKSGKELWKFQTGSGIVSPPIT 535
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.004
Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 26/142 (18%)
Query: 604 GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANR------ 657
+ V+YV ++ RL A+ A LW + +P C NR
Sbjct: 62 SQAIV--SDGVIYVTASYSRLFALD--AKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG 117
Query: 658 -HVICCLVDGHVVALDSSGSIIWRCRTGGPIFAGPCTSF-------ALPSQVLI------ 703
V +D VVAL+ + + + AG + +VL+
Sbjct: 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG 177
Query: 704 --CSRNGSIYSFEQESGNLLWE 723
G +++ + ++G +W
Sbjct: 178 DEFGVVGRLFARDPDTGEEIWM 199
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 23/213 (10%)
Query: 531 VVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590
++ G Y LD G + + G+V VD G +
Sbjct: 317 LMQAPKNGFFYVLDRTNGKLISAEKF-GKVTWAEKVDLAT-----GRPVEAPGVRYEKEP 370
Query: 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVP--AFA 648
++ P G + S + + ++Y I + +P + V AF
Sbjct: 371 IVMWPSPFGAHNWHSMSFNPGTGLVY----------IPYQEVPGVYRNEGKDFVTRKAFN 420
Query: 649 SLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICSR 706
+ + V +V G ++A D W+ G T+ L V +
Sbjct: 421 TAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNL---VFQGTA 477
Query: 707 NGSIYSFEQESGNLLWEYSVGDPITASAYIDEH 739
G ++++ + G LW++ I A+ E
Sbjct: 478 AGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 44.2 bits (103), Expect = 6e-05
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Query: 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597
G + D + W + A L++ G+ ++A +++
Sbjct: 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGN-LVFQGTAAGQMHAYSADKGEALWQFE 496
Query: 598 CGGSIFGSPAIDEVHDVLYVASTSG 622
I +P E+ YVA +G
Sbjct: 497 AQSGIVAAPMTFELAGRQYVAIMAG 521
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 40.7 bits (94), Expect = 6e-04
Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 24/171 (14%)
Query: 463 QELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWE-----IKLE 515
W + +++ ++A+PL D ++ + I DA LW K++
Sbjct: 45 GLAWYMDLDNTRGLEATPLFH----DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVK 100
Query: 516 GRIECSAAVLADFS----QVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC------QPV 565
R C AV + +V VG G++ LD TG W+ QT K V
Sbjct: 101 ARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV 160
Query: 566 VDAPRQLIWCGSHDH---NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD 613
V + G+ + A D + ++ P
Sbjct: 161 VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELR 211
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 48.0 bits (113), Expect = 4e-06
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597
G++ D + W+ + + A +++ G+ D L A +++ P
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGN-VVFQGTADGRLVAYHAATGEKLWEAP 515
Query: 598 CGGSIFGSPAIDEVHDVLYVASTSG 622
G + +P+ V YV+ G
Sbjct: 516 TGTGVVAAPSTYMVDGRQYVSVAVG 540
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 47.6 bits (112), Expect = 5e-06
Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 11/201 (5%)
Query: 534 GCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV 593
G + LD G + + + D +
Sbjct: 333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY-- 390
Query: 594 YKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCIT 653
G + + + ++Y+ + + + + K F+ + + +
Sbjct: 391 -----GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT-AK 444
Query: 654 SANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYS 712
N G ++A D + W P G T+ + V + +G + +
Sbjct: 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT--AGNVVFQGTADGRLVA 502
Query: 713 FEQESGNLLWEYSVGDPITAS 733
+ +G LWE G + A+
Sbjct: 503 YHAATGEKLWEAPTGTGVVAA 523
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 41.1 bits (95), Expect = 5e-04
Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 13/179 (7%)
Query: 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSP--AIDEVHDVL 615
+ L++ + + + +D + + P G G+ +
Sbjct: 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP-GKPQSGTGWNTAKFFNAEP 450
Query: 616 YVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALDS-S 674
+ GRL A A W E P +T+A V DG +VA + +
Sbjct: 451 PKSKPFGRLLAWDPVAQ--KAAWSVEHVSPWNGGT-LTTAGNVVFQGTADGRLVAYHAAT 507
Query: 675 GSIIWRCRTGGPIFAGPCTSFALPSQ-VLICSRNGSIYSF-----EQESGNLLWEYSVG 727
G +W TG + A P T Q V + G +Y E++ ++ + VG
Sbjct: 508 GEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 46.5 bits (109), Expect = 1e-05
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 8/135 (5%)
Query: 600 GSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHV 659
G + D ++ ++ + + + + N
Sbjct: 392 YHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEG 451
Query: 660 ICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESG 718
+ G + A + +G W ++ G + V + +G + + + ++G
Sbjct: 452 L-----GQIKAYNAITGDYKWEKMERFAVWGGTMAT--AGDLVFYGTLDGYLKARDSDTG 504
Query: 719 NLLWEYSVGDPITAS 733
+LLW++ +
Sbjct: 505 DLLWKFKIPSGAIGY 519
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 46.5 bits (109), Expect = 1e-05
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 538 GKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP 597
G+I + +TGD W V + A L++ G+ D L A D ++K
Sbjct: 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDLLWKFK 511
Query: 598 CGGSIFGSPAIDEVHDVLYVASTSG 622
G P YVA G
Sbjct: 512 IPSGAIGYPMTYTHKGTQYVAIYYG 536
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 40.7 bits (94), Expect = 7e-04
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 621 SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIW 679
G++ A A+ W + + +A V +DG++ A D +G ++W
Sbjct: 452 LGQIKAY--NAITGDYKWEKMERFAVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDLLW 508
Query: 680 RCRTGGPIFAGPCT 693
+ + P T
Sbjct: 509 KFKIPSGAIGYPMT 522
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 39.2 bits (90), Expect = 0.002
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 31/215 (14%)
Query: 552 WTFQT--CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFR-------------NYRCVYKL 596
WTF T + P+V ++ S +N +AL N
Sbjct: 44 WTFSTGLLNGHEGAPLV-VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA 102
Query: 597 PCGGSIFG---SPAIDEVHDVLYVASTSGRLTAISVKAL-PFHTLWLHELEVPAFASLCI 652
C G P + ++ G + A++ + + +++V + ++
Sbjct: 103 CCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP 162
Query: 653 TSANRHVI------CCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 705
VI V G++ A D +G +WR GP S
Sbjct: 163 YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222
Query: 706 RNGSIYSFEQES----GNLLWEYSVGDPITASAYI 736
+ ++E ++ G W + DP T Y
Sbjct: 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYF 257
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Score = 38.7 bits (90), Expect = 1e-04
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 287 ASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNS------IAAAHVAHNLGIDMRLIYNF 340
+ + + + + L V + DNFF +GG+S A H + + + +++++
Sbjct: 5 TNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQ 64
Query: 341 PTPSKL 346
PT L
Sbjct: 65 PTIKAL 70
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 829 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 99.97 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.97 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.93 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.93 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.92 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.91 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.91 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.85 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.84 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.82 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.81 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.8 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.75 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.72 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.7 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.69 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.67 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.67 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.67 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.65 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.65 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.64 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.63 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.63 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.61 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.58 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.57 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.52 | |
| d2gdwa1 | 76 | Peptidyl carrier protein (PCP), thioester domain { | 99.5 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.5 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.47 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.44 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.44 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.39 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.34 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.32 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.31 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.31 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.3 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.29 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.21 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.19 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.11 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.09 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.09 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.05 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.05 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.03 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.94 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 98.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.67 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.67 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.67 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.63 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.62 | |
| d2pnga1 | 76 | Type I fatty acid synthase ACP domain {Rat (Rattus | 98.59 | |
| d2af8a_ | 86 | Actinorhodin polyketide synthase acyl carrier prot | 98.55 | |
| d1vkua_ | 85 | Acyl carrier protein {Thermotoga maritima [TaxId: | 98.54 | |
| d1nq4a_ | 95 | Oxytetracycline polyketide synthase acyl carrier { | 98.53 | |
| d2jq4a1 | 83 | Hypothetical protein Atu2571 {Agrobacterium tumefa | 98.52 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.52 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.49 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.49 | |
| d1dv5a_ | 80 | apo-D-alanyl carrier protein {Lactobacillus casei | 98.49 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.42 | |
| d1or5a_ | 82 | Frenolicin polyketide synthase acyl carrier protei | 98.42 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.38 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.38 | |
| d1klpa_ | 115 | Acyl carrier protein {Mycobacterium tuberculosis [ | 98.33 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.23 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.23 | |
| d1f80d_ | 74 | Acyl carrier protein {Bacillus subtilis [TaxId: 14 | 98.2 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.2 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.07 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.92 | |
| d1t8ka_ | 77 | Acyl carrier protein {Escherichia coli [TaxId: 562 | 97.8 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.49 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.33 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.18 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.07 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.03 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.03 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.92 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.3 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.17 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.12 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 96.09 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 95.92 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.88 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 95.83 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 95.82 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.39 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 94.61 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.33 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 91.84 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.82 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 90.09 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.85 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 88.27 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 86.71 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 85.37 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 83.54 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 82.99 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 81.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 80.43 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=5.4e-39 Score=365.85 Aligned_cols=243 Identities=23% Similarity=0.314 Sum_probs=211.2
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCC--CceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFP--NISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
...++++||.+++|||++++++++++.+.++ ++.+++.||+||++..++...... ...+..++|+|+++++
T Consensus 369 ~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~-------~~~~~gs~G~p~~g~~ 441 (643)
T d1pg4a_ 369 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA-------IELKAGSATRPFFGVQ 441 (643)
T ss_dssp TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT-------CCBCTTCCBSBCTTCC
T ss_pred cccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCc-------cCCCCCccccccCCCE
Confidence 3456899999999999999999999999974 578999999999987655322111 1235678999999999
Q ss_pred EEEecCCCC---CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEE
Q 003331 91 IVLVESDTV---KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVF 165 (829)
Q Consensus 91 ~~i~d~~~~---~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~ 165 (829)
++++|+++. .+..|||+|+| |+++.||+++++.+.+.|.. ..++||+|||+|++++||+|++
T Consensus 442 v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~-------------~~~g~~~TGDl~~~d~dG~l~i 508 (643)
T d1pg4a_ 442 PALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS-------------TFKNMYFSGDGARRDEDGYYWI 508 (643)
T ss_dssp EEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS-------------SSTTSEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcc-------------cCCCeEEcCCEEEECCCceEEE
Confidence 999998874 34569999999 47889999998766655432 1467999999999999999999
Q ss_pred EeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCc
Q 003331 166 LGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMI 245 (829)
Q Consensus 166 ~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 245 (829)
+||+||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|||+++++....+++.++|+++++++|+++++
T Consensus 509 ~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~v 588 (643)
T d1pg4a_ 509 TGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT 588 (643)
T ss_dssp EEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGC
T ss_pred ecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccC
Confidence 99999999999999999999999999999999999999998888999999999988777777778999999999999999
Q ss_pred CCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 246 PNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 246 p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
|+.++++++||+|++|||+|++|++++...
T Consensus 589 P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 618 (643)
T d1pg4a_ 589 PDVLHWTDSLPKTRSGKIMRRILRKIAAGD 618 (643)
T ss_dssp CSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence 999999999999999999999999987653
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.9e-37 Score=353.07 Aligned_cols=244 Identities=24% Similarity=0.311 Sum_probs=204.4
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCC--ceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPN--ISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCD 90 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~ 90 (829)
...++++||.+++|||++++++++++.+.++. ..+++.||+||++..+........ ...+..++|+|+++++
T Consensus 356 ~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~------~~~~~gs~G~p~~g~~ 429 (640)
T d1ry2a_ 356 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGV------TPMKPGSASFPFFGID 429 (640)
T ss_dssp SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTC------CCCCTTCCCEECTTCC
T ss_pred ccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCc------CCCCCcccccccCCce
Confidence 34568999999999999999999999999853 579999999999876554322211 1235678999999999
Q ss_pred EEEecCCCC-----CCCCCeEEEcc--ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcE
Q 003331 91 IVLVESDTV-----KPDEGEIYAGG--LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDL 163 (829)
Q Consensus 91 ~~i~d~~~~-----~~~~Gel~i~g--~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l 163 (829)
++|+|+++. .+..|||++.| |+++.||+++++.+.+.|.. ...+||+|||+|++++||+|
T Consensus 430 ~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~-------------~~~gw~~TGDlg~~d~dG~l 496 (640)
T d1ry2a_ 430 AVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLN-------------PYPGYYFTGDGAAKDKDGYI 496 (640)
T ss_dssp EEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTS-------------SSTTSEEEEEEEEECTTCCE
T ss_pred EEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhcc-------------CCCCeEEcCCceeECCCCCE
Confidence 999987652 23459999998 58999999999888877753 14689999999999999999
Q ss_pred EEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCch-------HHHHHHHHHHH
Q 003331 164 VFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSS-------EIFLSSIKSWV 236 (829)
Q Consensus 164 ~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~-------~~~~~~l~~~l 236 (829)
+|+||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++++.... +.+.++|++++
T Consensus 497 ~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~ 576 (640)
T d1ry2a_ 497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV 576 (640)
T ss_dssp EECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHH
T ss_pred EEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888888999999988754322 23457789999
Q ss_pred HhcCCCCCcCCeEEEeCcccCCCCCCcchhhhccccccc
Q 003331 237 SSKLPLAMIPNRFVFMDSLPMTSSGKVDYASLSASTSFT 275 (829)
Q Consensus 237 ~~~l~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~~~~~~ 275 (829)
+++|++|++|+.++++++||+|++|||+|++|++++..+
T Consensus 577 ~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~ 615 (640)
T d1ry2a_ 577 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615 (640)
T ss_dssp HHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCC
Confidence 999999999999999999999999999999999987643
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=5.5e-36 Score=337.92 Aligned_cols=233 Identities=23% Similarity=0.288 Sum_probs=192.0
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEEEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDIVL 93 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i 93 (829)
..++++||.+++|||++++.+.+++.+.++...+++.||+||++..++..... .....++|+|+++++++|
T Consensus 300 ~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~svG~p~~~~~~~i 370 (541)
T d1lcia_ 300 KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG---------DDKPGAVGKVVPFFEAKV 370 (541)
T ss_dssp GSCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGGSSCSEECCCC------------CCCCBEECTTCEEEE
T ss_pred ccccccceEEEecccccccccccccccccCCceeeecCCccccCceEEecCcc---------cCCCCccccccCCCEEEE
Confidence 45678999999999999999999999999777899999999999877653321 224568999999999999
Q ss_pred ecCCC----CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEeec
Q 003331 94 VESDT----VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGRK 169 (829)
Q Consensus 94 ~d~~~----~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR~ 169 (829)
+|++. +.++.|||+|+|++++.||+++++.+...|. .++||+|||+|+++++|.++++||.
T Consensus 371 ~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~~~~~TGDl~~~~~~G~~~~~GR~ 435 (541)
T d1lcia_ 371 VDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALID---------------KDGWLHSGDIAYWDEDEHFFIVDRL 435 (541)
T ss_dssp ECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBC---------------TTSCEEEEEEEEECTTCCEEEC---
T ss_pred EECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhccc---------------CCccccCCCeeEEcCCeEEEEeeee
Confidence 98654 4577899999999999999998876665553 4689999999999999999999999
Q ss_pred CCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCC-CcCCe
Q 003331 170 DRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLA-MIPNR 248 (829)
Q Consensus 170 dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~ 248 (829)
||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.++++|+++++..... ++|+++++++++++ ++|..
T Consensus 436 ~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~l~~~~~~p~~ 512 (541)
T d1lcia_ 436 KSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTE---KEIVDYVASQVTTAKKLRGG 512 (541)
T ss_dssp --CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHHHSCGGGSCTTE
T ss_pred cCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCH---HHHHHHHHHhCCccccCCcE
Confidence 999999999999999999999999999999999998888889999999876654333 57888899988776 58999
Q ss_pred EEEeCcccCCCCCCcchhhhccccc
Q 003331 249 FVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 249 ~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
++++++||+|++|||||++|++++.
T Consensus 513 i~~v~~lP~t~~GKi~r~~l~~~~~ 537 (541)
T d1lcia_ 513 VVFVDEVPKGLTGKLDARKIREILI 537 (541)
T ss_dssp EEEESSCCC-----CCHHHHHHHHH
T ss_pred EEEeCCCCcCCCcCccHHHHHHHHH
Confidence 9999999999999999999998764
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-36 Score=338.98 Aligned_cols=240 Identities=24% Similarity=0.328 Sum_probs=167.1
Q ss_pred CCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcc--cccCCCCccccccccCCcEE
Q 003331 14 MHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSI--LEMSTLKSVPIGLPISNCDI 91 (829)
Q Consensus 14 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~p~~~~~~ 91 (829)
..++++||.+++|||++++.+.+.+.+. +.++++.||+||++..++.......... .........++|+|++++++
T Consensus 282 ~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~ 359 (534)
T d1v25a_ 282 GHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRL 359 (534)
T ss_dssp TCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEE
T ss_pred cccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEE
Confidence 4578999999999999999999998876 6799999999999987764322111000 00011235689999999999
Q ss_pred EEecCCCCC-----CCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEE
Q 003331 92 VLVESDTVK-----PDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFL 166 (829)
Q Consensus 92 ~i~d~~~~~-----~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~ 166 (829)
+|+|+++.+ ++.|||+|+|+.++.||+++++.+...|. .++||+|||+|++++||.++++
T Consensus 360 ~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~---------------~dg~~~TGDlg~~~~~G~l~~~ 424 (534)
T d1v25a_ 360 RVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALT---------------PDGFFRTGDIAVWDEEGYVEIK 424 (534)
T ss_dssp EEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBC---------------TTSCEEEEEEEEECTTCCEEEE
T ss_pred EEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcc---------------cCCCCccCceeEECCCccEEEe
Confidence 999987732 45799999999999999999988887773 3679999999999999999999
Q ss_pred eecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcCCCCCcC
Q 003331 167 GRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKLPLAMIP 246 (829)
Q Consensus 167 GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p 246 (829)
||.||+||++|+||+|.|||++|.+||.|.+|+|++.+++..++.++|+|+++......+ +.++..+++.||.|++|
T Consensus 425 GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~---~~~~~~~~~~l~~~~~P 501 (534)
T d1v25a_ 425 DRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPE---ELNEHLLKAGFAKWQLP 501 (534)
T ss_dssp EESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC----------------------CCCTTTSC
T ss_pred cccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHH---HHHHHHHHhcCCcCCCc
Confidence 999999999999999999999999999999999999998888889999998875543332 23344577889999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
..|+++++||+|++|||||++|++.++
T Consensus 502 ~~i~~~~~lP~t~~GKi~R~~lr~~~~ 528 (534)
T d1v25a_ 502 DAYVFAEEIPRTSAGKFLKRALREQYK 528 (534)
T ss_dssp SBC--------------CCTTHHHHST
T ss_pred cEEEEECCCCCCCCccccHHHHHHHHH
Confidence 999999999999999999999998765
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=3.3e-34 Score=320.91 Aligned_cols=244 Identities=30% Similarity=0.507 Sum_probs=210.4
Q ss_pred cchhhhhccCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccc
Q 003331 4 VLPALQSQHNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIG 83 (829)
Q Consensus 4 l~~~l~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (829)
++|.........++++++.+++||+++++++.+++.+ +..+++.||+||++..++....... ......+.|
T Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~~~~~ 333 (514)
T d1amua_ 263 LPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWVATKE------TIGHSVPIG 333 (514)
T ss_dssp ECHHHHTTSCTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEECCSS------CCCSSCCCB
T ss_pred ceeeecccccccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeecccccc------ccCcccccc
Confidence 4455555566678999999999999999999887655 6789999999999987765443221 122456788
Q ss_pred cccCCcEEEEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccC
Q 003331 84 LPISNCDIVLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQS 160 (829)
Q Consensus 84 ~p~~~~~~~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~ 160 (829)
.+.++..+.+.|++. +.++.|||+|+|+.++.||++++..+.+.|...+.. ++++||+|||+|+++++
T Consensus 334 ~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~---------~~~~~~~TGD~g~~d~~ 404 (514)
T d1amua_ 334 APIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFV---------PGEKLYKTGDQARWLSD 404 (514)
T ss_dssp EECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSS---------TTSEEEEEEEEEEECTT
T ss_pred cceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEecccc---------CCCceEEECCEEEECCC
Confidence 999999999998776 356779999999999999999999888888765443 25789999999999999
Q ss_pred CcEEEEeecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhcC
Q 003331 161 GDLVFLGRKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSKL 240 (829)
Q Consensus 161 G~l~~~GR~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~l 240 (829)
|+|+++||+||+||++|++|+|.+||++|.+||.|.+|+|++.++...+..++|+++++.+.. .++|+++++++|
T Consensus 405 G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~~~~~l 479 (514)
T d1amua_ 405 GNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEEL 479 (514)
T ss_dssp SCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHS
T ss_pred CcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCCCC-----HHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999998888899999998876532 357889999999
Q ss_pred CCCCcCCeEEEeCcccCCCCCCcchhhhcc
Q 003331 241 PLAMIPNRFVFMDSLPMTSSGKVDYASLSA 270 (829)
Q Consensus 241 ~~~~~p~~~~~~~~lP~t~~GKi~r~~l~~ 270 (829)
+.+++|..++++++||+|++|||+|++|++
T Consensus 480 ~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 480 PTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp CGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred CcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 999999999999999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=99.97 E-value=3.1e-31 Score=298.43 Aligned_cols=233 Identities=24% Similarity=0.391 Sum_probs=194.0
Q ss_pred CCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccC-CcEE
Q 003331 13 NMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPIS-NCDI 91 (829)
Q Consensus 13 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~-~~~~ 91 (829)
....+++++.+++||+++++.+.+++.+.+ +......||.+|.+..+...... ......++|.|++ +..+
T Consensus 293 ~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~p~~~~~~~ 363 (536)
T d1mdba_ 293 RRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDP--------EEIIVNTQGKPMSPYDES 363 (536)
T ss_dssp CCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSC--------HHHHHHCCCEESSTTCEE
T ss_pred cccccCcceeEEEeccccccccccchhhcc-Cceeeeccccccccccccccccc--------cccccCCcccCCCCcceE
Confidence 455689999999999999999999999998 56777888888876544332211 1124567899986 4555
Q ss_pred EEecCCC---CCCCCCeEEEccccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEee
Q 003331 92 VLVESDT---VKPDEGEIYAGGLCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLGR 168 (829)
Q Consensus 92 ~i~d~~~---~~~~~Gel~i~g~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~GR 168 (829)
.+.++++ +.++.|||++.|+.++.||++++..+...|. ..+||+|||++++++||+|+++||
T Consensus 364 ~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~---------------~~~~~~tGD~~~~~~dG~l~~~GR 428 (536)
T d1mdba_ 364 RVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFT---------------EDGFYRTGDIVRLTRDGYIVVEGR 428 (536)
T ss_dssp EEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBC---------------TTSCEEEEEEEEECTTSCEEEEEE
T ss_pred EEEcCCCCeecccccceeecCCCcccccccccccccccccc---------------ccCccccCccccccCCCceecCCC
Confidence 5655554 3567899999999999999998876665553 468999999999999999999999
Q ss_pred cCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHHHhc-CCCCCcCC
Q 003331 169 KDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWVSSK-LPLAMIPN 247 (829)
Q Consensus 169 ~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~ 247 (829)
.||+||++|+||+|.+||++|.+||+|.+|+|++.+++..++.++|+|+++++.... ++|+++++++ ||.+++|.
T Consensus 429 ~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~----~~l~~~l~~~~l~~~~~P~ 504 (536)
T d1mdba_ 429 AKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKA----AELKAFLRERGLAAYKIPD 504 (536)
T ss_dssp GGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCH----HHHHHHHHHTTCCGGGSCS
T ss_pred cceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCH----HHHHHHHHhcCCCcCcCcc
Confidence 999999999999999999999999999999999999888888999999988765443 4677788765 99999999
Q ss_pred eEEEeCcccCCCCCCcchhhhccccc
Q 003331 248 RFVFMDSLPMTSSGKVDYASLSASTS 273 (829)
Q Consensus 248 ~~~~~~~lP~t~~GKi~r~~l~~~~~ 273 (829)
.++++++||+|++|||||++|++.+.
T Consensus 505 ~i~~v~~lP~t~~GKi~r~~L~~~~~ 530 (536)
T d1mdba_ 505 RVEFVESFPQTGVGKVSKKALREAIS 530 (536)
T ss_dssp EEEECSSCCBCTTSCBCHHHHHHHHH
T ss_pred EEEEECCCCcCCCcCccHHHHHHHHH
Confidence 99999999999999999999988764
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.97 E-value=2.4e-30 Score=288.67 Aligned_cols=231 Identities=22% Similarity=0.280 Sum_probs=184.7
Q ss_pred cCCCCCCCccEEEEecCCCCHhHHHHHHHhCCCceEEeecCccccccccccccccCCCcccccCCCCccccccccCCcEE
Q 003331 12 HNMHVPSSLKLLVLSGEVLPLSMWDIISKLFPNISILNLYGSTEVSGDCTYFDCKRLPSILEMSTLKSVPIGLPISNCDI 91 (829)
Q Consensus 12 ~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~ 91 (829)
.....+++||.+++|||++++++...+...+ +..+.+.||+||++..+........ ...+.+.+.+....
T Consensus 266 ~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 335 (503)
T d3cw9a1 266 GSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMRQPKTG---------TEMAPGFFSEVRIV 335 (503)
T ss_dssp CTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEESCSSS---------SEEBCCTTCCEEEE
T ss_pred cccccccceEEEEeccccccccccccccccc-cccccccccccccceeeeecccccc---------ccccccccccceee
Confidence 3445678999999999999999999999987 6689999999999876654332221 12222333333333
Q ss_pred EEecCCC---CCCCCCeEEEcc-ccccccccCCCCCCcccccccCCcccccCcCCCCCcceEecCceEEEccCCcEEEEe
Q 003331 92 VLVESDT---VKPDEGEIYAGG-LCLSNGYFSESTFMPSEYVKLHNNSICNCSVSCGSQTYFRTGDFARRIQSGDLVFLG 167 (829)
Q Consensus 92 ~i~d~~~---~~~~~Gel~i~g-~~~~~gy~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~l~~~G 167 (829)
.+.+..+ +.++.|++.+.+ .....+|++++..+.+.| .++||+|||+|++++||.|+++|
T Consensus 336 ~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~----------------~~g~~~TgD~g~~~~dG~l~~~G 399 (503)
T d3cw9a1 336 RIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL----------------QDGWYRTSDVAVWTPEGTVRILG 399 (503)
T ss_dssp CTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE----------------ETTEEEEEEEEEECTTSCEEEEE
T ss_pred eeecccCcccCCCccccccccccccccccccCChhhhHHHh----------------cCCceecccccccccCCeEEeCC
Confidence 3333322 356667766654 456678888888887776 35799999999999999999999
Q ss_pred ecCCcEEECCeeeChHHHHHHHhCCCCeeEEEEEEeecCCceEEEEEEEEecCCCCchHHHHHHHHHHH-HhcCCCCCcC
Q 003331 168 RKDRTIKINGQRMALEEIEHTLRGHPDVVDTAVVSHKHQGELVILVAFIVLKEKKTSSEIFLSSIKSWV-SSKLPLAMIP 246 (829)
Q Consensus 168 R~dd~ik~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~p 246 (829)
|+||+||++|++|+|.+||++|.+||.|.+|+|++.+++..++.++|+|+++.+..... ++|++++ .++||.|++|
T Consensus 400 R~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~---~~l~~~~~~~~l~~~~~P 476 (503)
T d3cw9a1 400 RVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA---DALDTFCRSSELADFKRP 476 (503)
T ss_dssp ESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH---HHHHHHHHHSSSCGGGSC
T ss_pred CcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCH---HHHHHHHHhcCCCCCCCc
Confidence 99999999999999999999999999999999999998888889999999876544333 5788888 4689999999
Q ss_pred CeEEEeCcccCCCCCCcchhhhccc
Q 003331 247 NRFVFMDSLPMTSSGKVDYASLSAS 271 (829)
Q Consensus 247 ~~~~~~~~lP~t~~GKi~r~~l~~~ 271 (829)
+.++++++||+|++|||+|++|++.
T Consensus 477 ~~i~~v~~~P~t~~GKi~R~~L~~~ 501 (503)
T d3cw9a1 477 KRYFILDQLPKNALNKVLRRQLVQQ 501 (503)
T ss_dssp SEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred cEEEEECCCCcCCCcCccHHHHHHh
Confidence 9999999999999999999999864
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.93 E-value=8e-24 Score=234.85 Aligned_cols=324 Identities=16% Similarity=0.251 Sum_probs=234.7
Q ss_pred ccCccccccccccccccc--cccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCceeec---------
Q 003331 455 PRNKRGFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRIECS--------- 521 (829)
Q Consensus 455 p~~~~~~~~~~W~~~~~~--~~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~~~~--------- 521 (829)
...+...|++.|+++++. .+.++|+| .++.||+++. ++.|+++|+ +||+++|+++........
T Consensus 33 ~~~Nv~~L~~aW~~~~g~~~~~~~tP~v----~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 108 (571)
T d2ad6a1 33 NKSNVKNVKAAWSFSTGVLNGHEGAPLV----IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVD 108 (571)
T ss_dssp CTTTGGGCEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCC
T ss_pred CHhHhhhceEEEEEeCCCCCCcccCCEE----ECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCC
Confidence 344456789999999874 46789999 5899999985 688999998 579999998644221110
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNY 590 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg 590 (829)
..+...++.||+++.++.|+++|++||+++|.+.... .+...|++.. +.++++.. .|.|+++|+.||
T Consensus 109 rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG 186 (571)
T d2ad6a1 109 RGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKTG 186 (571)
T ss_dssp CCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred CcceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC--CeEEEeeccccccccCcEEEEECCCC
Confidence 0122235689999999999999999999999987543 3456666665 77888763 678999999999
Q ss_pred eEEEeeccC--------------------------------------CcccccceeecCCCEEEEEec------------
Q 003331 591 RCVYKLPCG--------------------------------------GSIFGSPAIDEVHDVLYVAST------------ 620 (829)
Q Consensus 591 ~~~w~~~~~--------------------------------------~~~~~~~~~~~~~~~l~v~t~------------ 620 (829)
+.+|++... +..++.+.++.+.+.+|+++.
T Consensus 187 ~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g 266 (571)
T d2ad6a1 187 ELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPG 266 (571)
T ss_dssp CEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS
T ss_pred cEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccc
Confidence 999986532 234566788888899999876
Q ss_pred ----CCeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecCC---EEEEEeeCCeEEEEc-CCCCEEEEeec
Q 003331 621 ----SGRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSANR---HVICCLVDGHVVALD-SSGSIIWRCRT 683 (829)
Q Consensus 621 ----~g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~~---~l~~~~~~g~i~~~d-~~g~~~w~~~~ 683 (829)
...++++|.++ |+.+|.++...... ....+..+++ .++.++.+|.++++| .+|+++|..+.
T Consensus 267 ~n~~s~svvAld~~T--G~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~ 344 (571)
T d2ad6a1 267 DNKWTMTIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp CCTTTTEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ccccccceeeeeccc--hhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeecc
Confidence 34689999998 99999987532111 1111222332 456777899999999 99999986542
Q ss_pred CC--------------ce--------------eecCc---------cccc-CCCeEEEEeeC------------------
Q 003331 684 GG--------------PI--------------FAGPC---------TSFA-LPSQVLICSRN------------------ 707 (829)
Q Consensus 684 ~~--------------~~--------------~~~~~---------~~~~-~~~~i~~~t~~------------------ 707 (829)
.. ++ ...+. ...+ ..+.+|+...+
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~ 424 (571)
T d2ad6a1 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred CCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccc
Confidence 11 00 00000 0001 12445554322
Q ss_pred -------------------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 708 -------------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 708 -------------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
|.|.++|+.||+.+|++.......+.+.... ++++++|+.||.++++|.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~Ta------------gglVf~G~~dg~l~A~Da 492 (571)
T d2ad6a1 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTK------------GGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEECTTSEEEEEET
T ss_pred cccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEec------------CCEEEEECCCCeEEEEEC
Confidence 5799999999999999987766555444332 889999999999999999
Q ss_pred ecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee
Q 003331 769 NLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC 811 (829)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~ 811 (829)
++| +.+|++++++.+..+|+. .+|+.|++.
T Consensus 493 ~tG-------------e~lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 493 KDG-------------KELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCC-------------cEEEEEECCCCceecceEEEECCEEEEEE
Confidence 987 889999999999999985 689888843
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.93 E-value=8.2e-24 Score=234.71 Aligned_cols=322 Identities=20% Similarity=0.305 Sum_probs=232.6
Q ss_pred cCcccccccccccccccc--ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-----e----eeceEE
Q 003331 456 RNKRGFIQELWKVHMESC--VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-----I----ECSAAV 524 (829)
Q Consensus 456 ~~~~~~~~~~W~~~~~~~--~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-----~----~~~~~~ 524 (829)
..+...|++.|+++++.. +.++|++ .++.||+++.++.|+|+|++||+++|+++.... . .....+
T Consensus 38 ~~nv~~L~~aW~~~~~~~~~~~stPiv----~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~ 113 (560)
T d1kv9a2 38 ASNVRSLGLAWYMDLDNTRGLEATPLF----HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGV 113 (560)
T ss_dssp TTTGGGEEEEEEEECSCCSCCCCCCEE----ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCC
T ss_pred hhHhhcceEEEEEECCCCCCcEeCCEE----ECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCc
Confidence 334457899999999765 5689999 589999999999999999999999999853311 0 001122
Q ss_pred eeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEE
Q 003331 525 LADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCV 593 (829)
Q Consensus 525 ~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~ 593 (829)
...++.||+++.++.|+++|++||+++|.+...+ .....|++.. +.+++++. .|.|+++|.+||+.+
T Consensus 114 ~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~~~ 191 (560)
T d1kv9a2 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADTGKLA 191 (560)
T ss_dssp EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ceeCCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec--CcccccccceeccccceEEEEECCCceEE
Confidence 2234589999999999999999999999987643 2334555554 77887653 367999999999999
Q ss_pred EeeccC-------------------------------CcccccceeecCCCEEEEEecC-------------------Ce
Q 003331 594 YKLPCG-------------------------------GSIFGSPAIDEVHDVLYVASTS-------------------GR 623 (829)
Q Consensus 594 w~~~~~-------------------------------~~~~~~~~~~~~~~~l~v~t~~-------------------g~ 623 (829)
|++... +.+++.+.++...+.+|+++.+ ..
T Consensus 192 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~s 271 (560)
T d1kv9a2 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (560)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred eeeeeccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCcccccee
Confidence 998642 2456778888888999987632 35
Q ss_pred EEEEEccCCCceEEEeeccCCcce--------ee-eeeeecC---CEEEEEeeCCeEEEEc-CCCCEEEEeecCCce---
Q 003331 624 LTAISVKALPFHTLWLHELEVPAF--------AS-LCITSAN---RHVICCLVDGHVVALD-SSGSIIWRCRTGGPI--- 687 (829)
Q Consensus 624 l~~~~~~~~~g~~~w~~~~~~~~~--------~s-~~~~~~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~--- 687 (829)
++++|+++ |+.+|.++...... .. ..+..++ ..++.++.+|.++++| .+|+++|..+.....
T Consensus 272 ivAld~~t--G~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~ 349 (560)
T d1kv9a2 272 ILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (560)
T ss_dssp EEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eEEecCCc--cceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence 89999998 99999886533211 01 1111122 2456677889999999 999999987543210
Q ss_pred ----------------------eecCcc---------ccc-CCCeEEEEee-----------------------------
Q 003331 688 ----------------------FAGPCT---------SFA-LPSQVLICSR----------------------------- 706 (829)
Q Consensus 688 ----------------------~~~~~~---------~~~-~~~~i~~~t~----------------------------- 706 (829)
...+.. ..+ ..+.+|+.+.
T Consensus 350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (560)
T d1kv9a2 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (560)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence 000000 001 2234555432
Q ss_pred -------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccc
Q 003331 707 -------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQS 779 (829)
Q Consensus 707 -------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~ 779 (829)
.|.|.++|..||+.+|++..+......+... .++++++|+.||.|++||.++|
T Consensus 430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T------------agglVF~G~~dg~l~A~Da~tG-------- 489 (560)
T d1kv9a2 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST------------AGNLVFQGTAAGQMHAYSADKG-------- 489 (560)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTTC--------
T ss_pred CCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEE------------CCCEEEEECCCCcEEEEECCCC--------
Confidence 2579999999999999998877655443333 2899999999999999999988
Q ss_pred ccccceeeeeeccCCcccccceE--ECCEEEEe
Q 003331 780 KDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 810 (829)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg 810 (829)
+++|+++++..+...|+. .+|+.|+.
T Consensus 490 -----e~LW~~~l~~~~~~~P~ty~~dGkqyv~ 517 (560)
T d1kv9a2 490 -----EALWQFEAQSGIVAAPMTFELAGRQYVA 517 (560)
T ss_dssp -----CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -----cEeEEEECCCCccccCEEEEECCEEEEE
Confidence 889999999988888887 68876664
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.92 E-value=8.1e-23 Score=227.57 Aligned_cols=340 Identities=17% Similarity=0.237 Sum_probs=237.4
Q ss_pred ccCccccccccccccccc--cccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCce---------eeceE
Q 003331 455 PRNKRGFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRI---------ECSAA 523 (829)
Q Consensus 455 p~~~~~~~~~~W~~~~~~--~~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~---------~~~~~ 523 (829)
...+...|++.|+++++. .+.++|+| .++.||+++.++.|+|+|++||+++|+++..... .....
T Consensus 48 ~~~nv~~L~~aW~~~~~~~~~~~stPiv----~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g 123 (573)
T d1kb0a2 48 NAANVKDLGLAWSYNLESTRGVEATPVV----VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG 123 (573)
T ss_dssp CTTTGGGEEEEEEEECCCCSCCCCCCEE----ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC
T ss_pred ChhHhhcceEEEEEECCCCCCcEECCEE----ECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCccccccccccccccc
Confidence 344456789999999874 46789999 5889999999999999999999999998643210 00111
Q ss_pred EeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC------eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCe
Q 003331 524 VLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG------EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYR 591 (829)
Q Consensus 524 ~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~------~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~ 591 (829)
+...++.+|+++.++.|+++|++||+++|+..... .....|++.. +.+++|+. .|.|+++|.+||+
T Consensus 124 ~~~~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~TG~ 201 (573)
T d1kb0a2 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAETGE 201 (573)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ceEECCcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEe--ccEEEeeccccccccceEEEEecCCcc
Confidence 22234589999999999999999999999987532 2234555554 77888753 3689999999999
Q ss_pred EEEeeccC--------------------------------CcccccceeecCCCEEEEEecC------------------
Q 003331 592 CVYKLPCG--------------------------------GSIFGSPAIDEVHDVLYVASTS------------------ 621 (829)
Q Consensus 592 ~~w~~~~~--------------------------------~~~~~~~~~~~~~~~l~v~t~~------------------ 621 (829)
++|++... +.++..+.++.+.+.+|+.+.+
T Consensus 202 ~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~ 281 (573)
T d1kb0a2 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (573)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred ceeeeeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccc
Confidence 99997542 2345567788888899886632
Q ss_pred -CeEEEEEccCCCceEEEeeccCCcce---------eeeeeeecC---CEEEEEeeCCeEEEEc-CCCCEEEEeecCCc-
Q 003331 622 -GRLTAISVKALPFHTLWLHELEVPAF---------ASLCITSAN---RHVICCLVDGHVVALD-SSGSIIWRCRTGGP- 686 (829)
Q Consensus 622 -g~l~~~~~~~~~g~~~w~~~~~~~~~---------~s~~~~~~~---~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~- 686 (829)
..++++|+++ |+.+|.++...... ....+..++ ..++.++.+|.++++| .+|+.+|..+....
T Consensus 282 ~~svvAld~~t--G~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~ 359 (573)
T d1kb0a2 282 LASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVN 359 (573)
T ss_dssp TTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS
T ss_pred cceEEEecccc--hheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccc
Confidence 3588999988 99999886532211 011111122 3566677889999999 99999997652110
Q ss_pred -----------------------eeecCc---------cccc-CCCeEEEEeeC--------------------------
Q 003331 687 -----------------------IFAGPC---------TSFA-LPSQVLICSRN-------------------------- 707 (829)
Q Consensus 687 -----------------------~~~~~~---------~~~~-~~~~i~~~t~~-------------------------- 707 (829)
....+. ...+ ..+.+|+.+.+
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 439 (573)
T d1kb0a2 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTG 439 (573)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGT
T ss_pred cccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccc
Confidence 000000 0001 12344443211
Q ss_pred -----------------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 708 -----------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 708 -----------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
|.|.++|+.||+.+|+++...+....+... .++++++|+.||.+++||.++
T Consensus 440 ~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst------------agglVF~G~~dg~l~A~Da~T 507 (573)
T d1kb0a2 440 WNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT------------AGNVVFQGTADGRLVAYHAAT 507 (573)
T ss_dssp CCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE------------TTTEEEEECTTSEEEEEETTT
T ss_pred cccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE------------cCCEEEEECCCCeEEEEECCC
Confidence 469999999999999998776554433332 388999999999999999998
Q ss_pred CccccccccccccceeeeeeccCCcccccceE--ECCEEEEeee------------------CCeEEEEeccccccc
Q 003331 771 DVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCR------------------DDYIYCIALETQHLE 827 (829)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~------------------~g~l~~~d~~tg~~~ 827 (829)
| +.+|++.+++.+...|+. .+|+.|+.-. .+.|++|.+....-.
T Consensus 508 G-------------e~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~~ 571 (573)
T d1kb0a2 508 G-------------EKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARM 571 (573)
T ss_dssp C-------------CEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCC
T ss_pred C-------------cEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCCC
Confidence 8 889999999998898885 6887666321 235888877654433
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.91 E-value=7.7e-22 Score=219.36 Aligned_cols=324 Identities=15% Similarity=0.224 Sum_probs=231.5
Q ss_pred cccCccccccccccccccc--cccccceEEeeCCCeEEEEecC-CCcEEEEEC-CCCcEEEEEEcCCcee----------
Q 003331 454 VPRNKRGFIQELWKVHMES--CVDASPLVVLKDSDIYLFVGSH-SHKFICADA-KRSSVLWEIKLEGRIE---------- 519 (829)
Q Consensus 454 ~p~~~~~~~~~~W~~~~~~--~~~~sp~v~~~d~~~~l~igs~-~g~l~~~d~-~tg~~~w~~~~~~~~~---------- 519 (829)
+...+...|++.|+++++. .+.++|++ .++.||+.+. .+.++++|. +||+++|+++......
T Consensus 32 I~~~Nv~~L~~aW~~~~~~~~~~~~tPiv----~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~ 107 (596)
T d1w6sa_ 32 INKGNVKQLRPAWTFSTGLLNGHEGAPLV----VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLV 107 (596)
T ss_dssp SCTTTGGGEEEEEEEECSCCSCCCSCCEE----ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSC
T ss_pred cCHhHhhhceEEEEEECCCCCCceeCCEE----ECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccc
Confidence 4445566899999999864 46789999 4889998654 678999997 6899999986432110
Q ss_pred -eceEEeeC----CcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----eeeeeeeeecCCCEEEEecc------CCeEE
Q 003331 520 -CSAAVLAD----FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-----EVKCQPVVDAPRQLIWCGSH------DHNLY 583 (829)
Q Consensus 520 -~~~~~~~~----~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-----~~~~~~~~~~~~~~i~~gs~------~g~l~ 583 (829)
-.+.+..+ ...||+++.|+.|+++|++||+++|.+...+ .+.+.|++.. +.|++|+. .|.|+
T Consensus 108 ~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~ 185 (596)
T d1w6sa_ 108 NRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLT 185 (596)
T ss_dssp CCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEE
T ss_pred cceeEEecCCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEEC--CeEEEeeccccccccCceE
Confidence 01122222 2369999999999999999999999987542 4556677765 78888864 48899
Q ss_pred EEEcCCCeEEEeeccC--------------------------------------CcccccceeecCCCEEEEEecC----
Q 003331 584 ALDFRNYRCVYKLPCG--------------------------------------GSIFGSPAIDEVHDVLYVASTS---- 621 (829)
Q Consensus 584 ~~d~~tg~~~w~~~~~--------------------------------------~~~~~~~~~~~~~~~l~v~t~~---- 621 (829)
++|++||+++|++... ...+..+.++...+.+|+++.+
T Consensus 186 A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~ 265 (596)
T d1w6sa_ 186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPW 265 (596)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCS
T ss_pred EEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccc
Confidence 9999999999987531 2346677888888999998754
Q ss_pred ------------CeEEEEEccCCCceEEEeeccCCcce------eeeee----eecC---CEEEEEeeCCeEEEEc-CCC
Q 003331 622 ------------GRLTAISVKALPFHTLWLHELEVPAF------ASLCI----TSAN---RHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 622 ------------g~l~~~~~~~~~g~~~w~~~~~~~~~------~s~~~----~~~~---~~l~~~~~~g~i~~~d-~~g 675 (829)
..+.++|+++ |+.+|+++...... ..+.+ ..++ ..++..+.+|.++++| .+|
T Consensus 266 ~~~~r~g~n~ys~sivAlD~~T--G~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG 343 (596)
T d1w6sa_ 266 NETMRPGDNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343 (596)
T ss_dssp CGGGSCSCCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccccccccccccc--ccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCC
Confidence 3489999998 99999886532211 11111 1122 2466678889999999 999
Q ss_pred CEEEEeecCC--------------ceee--------------cCc---------ccc-cCCCeEEEEee-----------
Q 003331 676 SIIWRCRTGG--------------PIFA--------------GPC---------TSF-ALPSQVLICSR----------- 706 (829)
Q Consensus 676 ~~~w~~~~~~--------------~~~~--------------~~~---------~~~-~~~~~i~~~t~----------- 706 (829)
+++|..+... ++.. .+. ... -..+.+|+...
T Consensus 344 ~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~ 423 (596)
T d1w6sa_ 344 ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFML 423 (596)
T ss_dssp CEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC
T ss_pred ceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccc
Confidence 9998654221 0000 000 000 01234444321
Q ss_pred ----------------------------CCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEc
Q 003331 707 ----------------------------NGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICT 758 (829)
Q Consensus 707 ----------------------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 758 (829)
-|.|.++|+.||+.+|+..........+.... ++++++|+
T Consensus 424 ~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTa------------gglVF~G~ 491 (596)
T d1w6sa_ 424 PYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATA------------GDLVFYGT 491 (596)
T ss_dssp CCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEET------------TTEEEEEC
T ss_pred cccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEec------------CCEEEEEC
Confidence 15799999999999999887766655444433 88999999
Q ss_pred cCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe
Q 003331 759 SSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 810 (829)
Q Consensus 759 ~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg 810 (829)
.||.++++|.++| +.+|++.+++.+...|+. .+|+-|+.
T Consensus 492 ~Dg~l~A~Da~TG-------------e~LW~~~~~~~~~a~P~tY~~dGkQYva 532 (596)
T d1w6sa_ 492 LDGYLKARDSDTG-------------DLLWKFKIPSGAIGYPMTYTHKGTQYVA 532 (596)
T ss_dssp TTSEEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCeEEEEECCCC-------------cEeeEEECCCCcccCCeEEEECCEEEEE
Confidence 9999999999988 889999999999999985 57876663
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=6.9e-22 Score=220.41 Aligned_cols=326 Identities=17% Similarity=0.251 Sum_probs=227.9
Q ss_pred cccCcccccccccccccccc----ccccceEEeeCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc--e-----eece
Q 003331 454 VPRNKRGFIQELWKVHMESC----VDASPLVVLKDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR--I-----ECSA 522 (829)
Q Consensus 454 ~p~~~~~~~~~~W~~~~~~~----~~~sp~v~~~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~--~-----~~~~ 522 (829)
+...+...|++.|+++++.. ..++|++ .+++||+++.++.|+++|++||+++|+++.... . ..+.
T Consensus 36 I~~~Nv~~L~~aW~~~~g~~~~~~~~stPiv----~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r 111 (582)
T d1flga_ 36 VNADNVFKLTPAWSYSFGDEKQRGQESQAIV----SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR 111 (582)
T ss_dssp SCTTTGGGCEEEEEEECCTTCCSCCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC
T ss_pred cCHhHhhhceEEEEEeCCCCCCCCcccCCEE----ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC
Confidence 45555678999999998743 3478998 589999999999999999999999999864321 0 0011
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----eeeeeeeecC---CCEEEEe-------ccCCeEEEEEc
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----VKCQPVVDAP---RQLIWCG-------SHDHNLYALDF 587 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----~~~~~~~~~~---~~~i~~g-------s~~g~l~~~d~ 587 (829)
.+...++.+++++.++.|+++|++||+++|+....+. ....|.+..+ .+.+++. +..+.++++|+
T Consensus 112 g~a~~~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~ 191 (582)
T d1flga_ 112 GAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDP 191 (582)
T ss_dssp CCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECT
T ss_pred CceEeCCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecC
Confidence 1222346899999999999999999999998775432 2233333321 2334433 23467999999
Q ss_pred CCCeEEEeecc-----------------------------------------CCcccccceeecCCCEEEEEec------
Q 003331 588 RNYRCVYKLPC-----------------------------------------GGSIFGSPAIDEVHDVLYVAST------ 620 (829)
Q Consensus 588 ~tg~~~w~~~~-----------------------------------------~~~~~~~~~~~~~~~~l~v~t~------ 620 (829)
+||+.+|++.. ++.++..+.++...+.+|+++.
T Consensus 192 ~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~ 271 (582)
T d1flga_ 192 DTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWN 271 (582)
T ss_dssp TTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSC
T ss_pred CCCcEEEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCccccc
Confidence 99999998643 1235677889988999999872
Q ss_pred ------------------CCeEEEEEccCCCceEEEeeccCCcce------eee---eee-ecC---CEEEEEeeCCeEE
Q 003331 621 ------------------SGRLTAISVKALPFHTLWLHELEVPAF------ASL---CIT-SAN---RHVICCLVDGHVV 669 (829)
Q Consensus 621 ------------------~g~l~~~~~~~~~g~~~w~~~~~~~~~------~s~---~~~-~~~---~~l~~~~~~g~i~ 669 (829)
...+.++|.++ |+.+|.++...... ..+ .+. .++ ..++..+.++.++
T Consensus 272 ~~~~~~~g~~~~~~dn~ys~SvvAld~~t--G~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~ 349 (582)
T d1flga_ 272 TWARTAKGGNPHDYDSLYTSGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFY 349 (582)
T ss_dssp GGGGSCTTSCSTTCCCTTCSEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEE
T ss_pred ccccccCCCCcCcccccccceeEEecccc--hhhhhcccccccccccccccccccccccccccccccceeEeecccccEE
Confidence 23488999988 99999987543211 000 111 112 2456677889999
Q ss_pred EEc-CCCCEEEEeecCCc----------------------------------eeecCcc---------cc-cCCCeEEEE
Q 003331 670 ALD-SSGSIIWRCRTGGP----------------------------------IFAGPCT---------SF-ALPSQVLIC 704 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~~----------------------------------~~~~~~~---------~~-~~~~~i~~~ 704 (829)
++| .+|+++|..+.... ....|.. .. ...+.+|+.
T Consensus 350 vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp 429 (582)
T d1flga_ 350 VVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVP 429 (582)
T ss_dssp EEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEE
T ss_pred eecccCCcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeee
Confidence 999 99998875432110 0011100 00 113446654
Q ss_pred eeC---------------------------------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCC
Q 003331 705 SRN---------------------------------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSID 751 (829)
Q Consensus 705 t~~---------------------------------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (829)
+.+ |.|+++|..||+++|++..+.+....+... .+
T Consensus 430 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lst------------ag 497 (582)
T d1flga_ 430 ANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT------------AG 497 (582)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE------------TT
T ss_pred ccccccccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCCccceeEE------------cC
Confidence 332 679999999999999998877665444333 28
Q ss_pred cEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEe
Q 003331 752 RLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVG 810 (829)
Q Consensus 752 ~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg 810 (829)
+++++|+.||.+++||.++| +++|++++++.....|+. .+|+-|+.
T Consensus 498 glVF~Gt~dg~l~A~Da~TG-------------e~LW~~~~~~~~~~~P~ty~~~G~qYv~ 545 (582)
T d1flga_ 498 NLVFTGTGDGYFKAFDAKSG-------------KELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp TEEEEECTTSEEEEEETTTC-------------CEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CeEEEeCCCCeEEEEECCCC-------------cEeEEEECCCCccccCEEEEECCEEEEE
Confidence 89999999999999999988 889999999988888887 58876654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.85 E-value=1.4e-19 Score=200.35 Aligned_cols=304 Identities=13% Similarity=0.152 Sum_probs=203.9
Q ss_pred CCcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEcC-CCcEEEEEecCCeeee-----------eeeeecC
Q 003331 505 RSSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDYL-TGDIYWTFQTCGEVKC-----------QPVVDAP 569 (829)
Q Consensus 505 tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~-tG~~~w~~~~~~~~~~-----------~~~~~~~ 569 (829)
+-++.|.+..+. .+.+++++. ++.+|+++. ++.|+++|+. ||+++|+++....... .+.+.
T Consensus 39 ~L~~aW~~~~g~~~~~~~tP~v~--~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-- 114 (571)
T d2ad6a1 39 NVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-- 114 (571)
T ss_dssp GCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--
T ss_pred hceEEEEEeCCCCCCcccCCEEE--CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--
Confidence 456789988753 345567775 358999885 6899999984 7999999875432211 12232
Q ss_pred CCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEE
Q 003331 570 RQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLW 638 (829)
Q Consensus 570 ~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w 638 (829)
++.||+++.++.|+++|.+||+.+|++... ....++|++.+ +.|++++. .|.|+++|++| |+.+|
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~T--G~~~W 190 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK--DTVLMGCSGAELGVRGAVNAFDLKT--GELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEEECBCGGGTCCCEEEEEETTT--CCEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC--CeEEEeeccccccccCcEEEEECCC--CcEEE
Confidence 478999999999999999999999998653 34567788876 89999884 67899999999 99999
Q ss_pred eeccCCc--------------------------------------ceeeeeeeecCCEEEEEee----------------
Q 003331 639 LHELEVP--------------------------------------AFASLCITSANRHVICCLV---------------- 664 (829)
Q Consensus 639 ~~~~~~~--------------------------------------~~~s~~~~~~~~~l~~~~~---------------- 664 (829)
++..... ......+....+.+|+++.
T Consensus 191 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~ 270 (571)
T d2ad6a1 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccc
Confidence 8653211 1123455667788888865
Q ss_pred CCeEEEEc-CCCCEEEEeecCCc-eee-----cCccc-ccCCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCCcccc
Q 003331 665 DGHVVALD-SSGSIIWRCRTGGP-IFA-----GPCTS-FALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGDPITA 732 (829)
Q Consensus 665 ~g~i~~~d-~~g~~~w~~~~~~~-~~~-----~~~~~-~~~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~ 732 (829)
...++++| .+|+++|.++.... +.. .+... ...++ .++..+.+|.++++|.+||+++|..+.......
T Consensus 271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~ 350 (571)
T d2ad6a1 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence 35689999 99999999885321 111 11110 11122 367788899999999999999997654321100
Q ss_pred c---------cc-------------------cccccccccccccCCCcEEEEEccC------------------------
Q 003331 733 S---------AY-------------------IDEHLQLKLESCLSIDRLVCICTSS------------------------ 760 (829)
Q Consensus 733 ~---------~~-------------------~~~~~~~~~~~~~~~~~~l~~~~~~------------------------ 760 (829)
. +. ..........+..+..+.+|+...+
T Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 0 00 0000000001111234555554433
Q ss_pred -------------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEecccccc
Q 003331 761 -------------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHL 826 (829)
Q Consensus 761 -------------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~ 826 (829)
|.|.++|..+| +..|++......++.++. .++.+|+|+.||.|++||.+||+.
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG-------------~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~ 497 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTG-------------KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eccccCCcccCCcccEEEeccCCC-------------ceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence 34555555554 666777766666777766 588999999999999999999998
Q ss_pred ccC
Q 003331 827 EEE 829 (829)
Q Consensus 827 ~~~ 829 (829)
.+|
T Consensus 498 lW~ 500 (571)
T d2ad6a1 498 LWN 500 (571)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.84 E-value=3e-19 Score=197.63 Aligned_cols=303 Identities=14% Similarity=0.186 Sum_probs=202.6
Q ss_pred CcEEEEEEcCCc--eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeeecCCCE
Q 003331 506 SSVLWEIKLEGR--IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVDAPRQL 572 (829)
Q Consensus 506 g~~~w~~~~~~~--~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~~~~~ 572 (829)
-++.|.+..+.. +.+++++.+ +.||+++.++.|+++|++||+++|+++.... +...+.. .++.
T Consensus 44 L~~aW~~~~~~~~~~~stPiv~~--g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 119 (560)
T d1kv9a2 44 LGLAWYMDLDNTRGLEATPLFHD--GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDK 119 (560)
T ss_dssp EEEEEEEECSCCSCCCCCCEEET--TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTE
T ss_pred ceEEEEEECCCCCCcEeCCEEEC--CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCe
Confidence 357788877643 446677754 5899999999999999999999999864321 1111222 2478
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEEeec
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w~~~ 641 (829)
||+++.++.|+++|.++|+++|++.... ...+.|.+.+ +.+++++. .|.|+++|.+| |+.+|++.
T Consensus 120 v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~T--G~~~W~~~ 195 (560)
T d1kv9a2 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVK--GKVIIGNGGAEYGVRGFVSAYDADT--GKLAWRFY 195 (560)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEEEEE
T ss_pred EEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeec--CcccccccceeccccceEEEEECCC--ceEEeeee
Confidence 9999999999999999999999986532 2445677766 88888764 36799999999 99999986
Q ss_pred cCC-------------------------------cceeeeeeeecCCEEEEEee-------------------CCeEEEE
Q 003331 642 LEV-------------------------------PAFASLCITSANRHVICCLV-------------------DGHVVAL 671 (829)
Q Consensus 642 ~~~-------------------------------~~~~s~~~~~~~~~l~~~~~-------------------~g~i~~~ 671 (829)
... .....+.+....+.+|+++. ...|.++
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence 421 11233455666788888752 3468999
Q ss_pred c-CCCCEEEEeecCCc-eeecCc-----cc-ccCC----CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccc------
Q 003331 672 D-SSGSIIWRCRTGGP-IFAGPC-----TS-FALP----SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITAS------ 733 (829)
Q Consensus 672 d-~~g~~~w~~~~~~~-~~~~~~-----~~-~~~~----~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~------ 733 (829)
| .+|+++|.++.... +....+ +. ...+ ..++.++.+|.+|++|..||+++|..+........
T Consensus 276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 9 99999999875321 111100 00 0011 24667788999999999999999987643321100
Q ss_pred -------------------cccccccccccccccCCCcEEEEEcc-----------------------------------
Q 003331 734 -------------------AYIDEHLQLKLESCLSIDRLVCICTS----------------------------------- 759 (829)
Q Consensus 734 -------------------~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------- 759 (829)
+...........+.....+.+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 00010001111111223445555432
Q ss_pred -CCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccccC
Q 003331 760 -SGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLEEE 829 (829)
Q Consensus 760 -~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~~~ 829 (829)
.|.|.++|..++ +..|++.......+.++. .++.+|+|+.||.|++||.+||+..++
T Consensus 436 ~~G~l~A~D~~tG-------------k~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~ 494 (560)
T d1kv9a2 436 VSGALLAWDPVKQ-------------KAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (560)
T ss_dssp CEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccceEEEeCCCC-------------eEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence 245677777765 667777776666655544 578999999999999999999998653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.82 E-value=1.4e-18 Score=193.14 Aligned_cols=303 Identities=17% Similarity=0.195 Sum_probs=197.8
Q ss_pred CcEEEEEEcCC--ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe-----------eeeeeeeecCCCE
Q 003331 506 SSVLWEIKLEG--RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE-----------VKCQPVVDAPRQL 572 (829)
Q Consensus 506 g~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~~~~~ 572 (829)
-++.|.+..+. .+.+++++.+ +.||+++.++.|+|+|++||+++|+++.... +...+.+. ++.
T Consensus 55 L~~aW~~~~~~~~~~~stPiv~~--g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 130 (573)
T d1kb0a2 55 LGLAWSYNLESTRGVEATPVVVD--GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGK 130 (573)
T ss_dssp EEEEEEEECCCCSCCCCCCEEET--TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTE
T ss_pred ceEEEEEECCCCCCcEECCEEEC--CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCc
Confidence 35668877653 3456777753 5899999999999999999999999864321 11222333 478
Q ss_pred EEEeccCCeEEEEEcCCCeEEEeeccCC------cccccceeecCCCEEEEEec------CCeEEEEEccCCCceEEEee
Q 003331 573 IWCGSHDHNLYALDFRNYRCVYKLPCGG------SIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 573 i~~gs~~g~l~~~d~~tg~~~w~~~~~~------~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~~~w~~ 640 (829)
+|+++.++.++++|.+||+++|+..... ...+.|.+.. +.+++++. .|.|+++|.+| |+.+|++
T Consensus 131 v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~--~~vivg~~~~~~~~~G~v~a~D~~T--G~~~W~~ 206 (573)
T d1kb0a2 131 VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFK--GKVIIGNGGAEYGVRGYITAYDAET--GERKWRW 206 (573)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEET--TEEEECCBCTTTCCBCEEEEEETTT--CCEEEEE
T ss_pred EEEEecccceeeeccccccceecccCccCCcceEEeecceEEEe--ccEEEeeccccccccceEEEEecCC--ccceeee
Confidence 9999999999999999999999876531 2345677766 88888764 36799999998 9999987
Q ss_pred ccCCc--------------------------------ceeeeeeeecCCEEEEEee-------------------CCeEE
Q 003331 641 ELEVP--------------------------------AFASLCITSANRHVICCLV-------------------DGHVV 669 (829)
Q Consensus 641 ~~~~~--------------------------------~~~s~~~~~~~~~l~~~~~-------------------~g~i~ 669 (829)
....+ ......+....+.+|+++. ...++
T Consensus 207 ~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svv 286 (573)
T d1kb0a2 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (573)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred eeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEE
Confidence 54210 0122345556677877642 23689
Q ss_pred EEc-CCCCEEEEeecCCc-eeecC----ccc--ccCC----CeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccc--
Q 003331 670 ALD-SSGSIIWRCRTGGP-IFAGP----CTS--FALP----SQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAY-- 735 (829)
Q Consensus 670 ~~d-~~g~~~w~~~~~~~-~~~~~----~~~--~~~~----~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~-- 735 (829)
++| .+|++.|.++.... +.... .+. ...+ ..++.++.+|.++++|.+||+++|..+..........
T Consensus 287 Ald~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~ 366 (573)
T d1kb0a2 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (573)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEecccccccccccccccccccccccc
Confidence 999 99999999875322 11111 110 1111 2467778899999999999999998654221100000
Q ss_pred ----------------------cccccccccccccCCCcEEEEEccC---------------------------------
Q 003331 736 ----------------------IDEHLQLKLESCLSIDRLVCICTSS--------------------------------- 760 (829)
Q Consensus 736 ----------------------~~~~~~~~~~~~~~~~~~l~~~~~~--------------------------------- 760 (829)
..........+.....+.+|+...+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 446 (573)
T d1kb0a2 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (573)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred ccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccccc
Confidence 0000000001111223445544332
Q ss_pred ----------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEeccccccccC
Q 003331 761 ----------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIALETQHLEEE 829 (829)
Q Consensus 761 ----------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d~~tg~~~~~ 829 (829)
|.|.++|..++ +..|++.......++++. .++.||+|+.||.|+|||.+||+..+|
T Consensus 447 ~~~p~~~~~~G~l~AiD~~tG-------------k~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~ 513 (573)
T d1kb0a2 447 NAEPPKSKPFGRLLAWDPVAQ-------------KAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (573)
T ss_dssp CSSCCCSCCEEEEEEEETTTT-------------EEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCCCCCcccEEEeCCCCC-------------ceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEE
Confidence 34566666654 667777666555555444 678999999999999999999998653
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.81 E-value=8.5e-18 Score=187.01 Aligned_cols=306 Identities=18% Similarity=0.238 Sum_probs=198.1
Q ss_pred CCcEEEEEEcCCc----eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCe---------eeeeeeeecCCC
Q 003331 505 RSSVLWEIKLEGR----IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGE---------VKCQPVVDAPRQ 571 (829)
Q Consensus 505 tg~~~w~~~~~~~----~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~---------~~~~~~~~~~~~ 571 (829)
.-++.|.+..++. ..+++++.+ +.||+++.++.||++|++||+++|+++.... +...+.+. ++
T Consensus 43 ~L~~aW~~~~g~~~~~~~~stPiv~~--g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~ 118 (582)
T d1flga_ 43 KLTPAWSYSFGDEKQRGQESQAIVSD--GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GD 118 (582)
T ss_dssp GCEEEEEEECCTTCCSCCCCCCEEET--TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TT
T ss_pred hceEEEEEeCCCCCCCCcccCCEEEC--CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CC
Confidence 4567788876532 235666653 5899999999999999999999999865321 11122233 47
Q ss_pred EEEEeccCCeEEEEEcCCCeEEEeeccCC-----cccccceeecC---CCEEEEEe-------cCCeEEEEEccCCCceE
Q 003331 572 LIWCGSHDHNLYALDFRNYRCVYKLPCGG-----SIFGSPAIDEV---HDVLYVAS-------TSGRLTAISVKALPFHT 636 (829)
Q Consensus 572 ~i~~gs~~g~l~~~d~~tg~~~w~~~~~~-----~~~~~~~~~~~---~~~l~v~t-------~~g~l~~~~~~~~~g~~ 636 (829)
.+++++.++.++++|.+||+.+|+..... .....|.+..+ .+.+++.. ..+.++++|+++ |+.
T Consensus 119 ~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~t--G~~ 196 (582)
T d1flga_ 119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT--GEE 196 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT--CCE
T ss_pred ceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCC--CcE
Confidence 89999999999999999999999876532 22344444332 23444432 246799999998 999
Q ss_pred EEeeccCCc-----------------------------------------ceeeeeeeecCCEEEEEee-----------
Q 003331 637 LWLHELEVP-----------------------------------------AFASLCITSANRHVICCLV----------- 664 (829)
Q Consensus 637 ~w~~~~~~~-----------------------------------------~~~s~~~~~~~~~l~~~~~----------- 664 (829)
+|++..... ...++.+....+.+|+++.
T Consensus 197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~ 276 (582)
T d1flga_ 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccc
Confidence 998754211 1123456667889998862
Q ss_pred -------------CCeEEEEc-CCCCEEEEeecCCc-ee-----ecCccc--ccCC----CeEEEEeeCCeEEEEeCCCC
Q 003331 665 -------------DGHVVALD-SSGSIIWRCRTGGP-IF-----AGPCTS--FALP----SQVLICSRNGSIYSFEQESG 718 (829)
Q Consensus 665 -------------~g~i~~~d-~~g~~~w~~~~~~~-~~-----~~~~~~--~~~~----~~i~~~t~~g~l~~~d~~tG 718 (829)
...+.++| .+|+++|.++.... +. ..+.+. ...+ ..++..+.+|.+|++|.++|
T Consensus 277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCC
Confidence 23589999 99999999985432 11 111111 1111 24667788999999999999
Q ss_pred cEEEEEecCCcccc----------------------------------ccccccccccccccccCCCcEEEEEccC----
Q 003331 719 NLLWEYSVGDPITA----------------------------------SAYIDEHLQLKLESCLSIDRLVCICTSS---- 760 (829)
Q Consensus 719 ~~~w~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 760 (829)
+++|..+....... .|...........+.....+.+|+.+.+
T Consensus 357 ~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~ 436 (582)
T d1flga_ 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred cccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccc
Confidence 99886543321110 0000000011111112234555554332
Q ss_pred -----------------------------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEe
Q 003331 761 -----------------------------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVG 810 (829)
Q Consensus 761 -----------------------------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg 810 (829)
|.|.++|+.+| +..|+...+...++.++. .++.+|+|
T Consensus 437 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG-------------~i~W~~~~~~p~~~g~lstagglVF~G 503 (582)
T d1flga_ 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG-------------KVVWEHKEHLPLWAGVLATAGNLVFTG 503 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC-------------CEEEEEEESSCCCSCCEEETTTEEEEE
T ss_pred cccccccccccccccccCccccccccCCCCeEEEEcCCCC-------------cEEeecCCCCCCccceeEEcCCeEEEe
Confidence 56777777765 666777777767766554 57799999
Q ss_pred eeCCeEEEEeccccccccC
Q 003331 811 CRDDYIYCIALETQHLEEE 829 (829)
Q Consensus 811 ~~~g~l~~~d~~tg~~~~~ 829 (829)
+.||.+++||.+||+..++
T Consensus 504 t~dg~l~A~Da~TGe~LW~ 522 (582)
T d1flga_ 504 TGDGYFKAFDAKSGKELWK 522 (582)
T ss_dssp CTTSEEEEEETTTCCEEEE
T ss_pred CCCCeEEEEECCCCcEeEE
Confidence 9999999999999998653
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.80 E-value=7.4e-18 Score=186.94 Aligned_cols=305 Identities=16% Similarity=0.155 Sum_probs=199.0
Q ss_pred CcEEEEEEcCC--ceeeceEEeeCCcEEEEEEe-CCEEEEEEc-CCCcEEEEEecCCee------------eeeeeeec-
Q 003331 506 SSVLWEIKLEG--RIECSAAVLADFSQVVVGCY-KGKIYFLDY-LTGDIYWTFQTCGEV------------KCQPVVDA- 568 (829)
Q Consensus 506 g~~~w~~~~~~--~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~-~tG~~~w~~~~~~~~------------~~~~~~~~- 568 (829)
-++.|.++.+. .+.+++++.+ +.||+++. ++.++++|+ +||+++|+++..... +.......
T Consensus 40 L~~aW~~~~~~~~~~~~tPiv~~--g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~ 117 (596)
T d1w6sa_ 40 LRPAWTFSTGLLNGHEGAPLVVD--GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD 117 (596)
T ss_dssp EEEEEEEECSCCSCCCSCCEEET--TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC
T ss_pred ceEEEEEECCCCCCceeCCEEEC--CEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCC
Confidence 35668877643 3556677754 48888764 688999997 689999998643211 01111211
Q ss_pred --CCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----CcccccceeecCCCEEEEEec------CCeEEEEEccCCCce
Q 003331 569 --PRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----GSIFGSPAIDEVHDVLYVAST------SGRLTAISVKALPFH 635 (829)
Q Consensus 569 --~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~l~v~t~------~g~l~~~~~~~~~g~ 635 (829)
....||+++.++.|+++|.+||+++|++... ..+.++|.+.+ +.|++++. .|.|+++|++| |+
T Consensus 118 ~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~--~~vivg~~~~e~~~~G~v~A~Da~T--G~ 193 (596)
T d1w6sa_ 118 GKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVK--DKVIIGSSGAELGVRGYLTAYDVKT--GE 193 (596)
T ss_dssp SSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET--TEEEECCBCGGGTCCCEEEEEETTT--CC
T ss_pred CCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEEC--CeEEEeeccccccccCceEEEECCC--Cc
Confidence 1246999999999999999999999998653 34667888887 99999875 38899999999 99
Q ss_pred EEEeeccCC--------------------------------------cceeeeeeeecCCEEEEEeeC------------
Q 003331 636 TLWLHELEV--------------------------------------PAFASLCITSANRHVICCLVD------------ 665 (829)
Q Consensus 636 ~~w~~~~~~--------------------------------------~~~~s~~~~~~~~~l~~~~~~------------ 665 (829)
++|++.... .......+....+.+|+++.+
T Consensus 194 ~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~ 273 (596)
T d1w6sa_ 194 QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGD 273 (596)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccc
Confidence 999865321 011334555677889988643
Q ss_pred ----CeEEEEc-CCCCEEEEeecCCc-ee-----ecCcccc--cCCC----eEEEEeeCCeEEEEeCCCCcEEEEEecCC
Q 003331 666 ----GHVVALD-SSGSIIWRCRTGGP-IF-----AGPCTSF--ALPS----QVLICSRNGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 666 ----g~i~~~d-~~g~~~w~~~~~~~-~~-----~~~~~~~--~~~~----~i~~~t~~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
..+.++| .+|+++|.++.... .. ..+.+.. ..++ .++..+.+|.++++|..+|+++|..+...
T Consensus 274 n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~ 353 (596)
T d1w6sa_ 274 NKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDD 353 (596)
T ss_dssp CTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESST
T ss_pred ccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccc
Confidence 4589999 99999999875321 11 1111111 1122 36677889999999999999999766432
Q ss_pred cccccc---------ccc-------------------cccccccccccCCCcEEEEEccC--------------------
Q 003331 729 PITASA---------YID-------------------EHLQLKLESCLSIDRLVCICTSS-------------------- 760 (829)
Q Consensus 729 ~~~~~~---------~~~-------------------~~~~~~~~~~~~~~~~l~~~~~~-------------------- 760 (829)
...... ... ........+..+..+++|+...+
T Consensus 354 ~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g 433 (596)
T d1w6sa_ 354 TVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVG 433 (596)
T ss_dssp TCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCC
T ss_pred cccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccc
Confidence 111000 000 00000011112234555555332
Q ss_pred -------------------CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE-ECCEEEEeeeCCeEEEEe
Q 003331 761 -------------------GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-IGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 761 -------------------G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~l~vg~~~g~l~~~d 820 (829)
|.|.+||..++ +..|+........+.++. .++.+|+|+.||.|++||
T Consensus 434 ~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG-------------~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~D 500 (596)
T d1w6sa_ 434 ATLNMYPGPKGDRQNYEGLGQIKAYNAITG-------------DYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD 500 (596)
T ss_dssp EEEEEEECTTSBTTTTBCCEEEEEECTTTC-------------CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred cccccccCcccCcccCCCcceEEEEeCCCC-------------ceecccCCCCCCccceeEecCCEEEEECCCCeEEEEE
Confidence 34555555544 556666666666666655 578899999999999999
Q ss_pred ccccccccC
Q 003331 821 LETQHLEEE 829 (829)
Q Consensus 821 ~~tg~~~~~ 829 (829)
.+||++.++
T Consensus 501 a~TGe~LW~ 509 (596)
T d1w6sa_ 501 SDTGDLLWK 509 (596)
T ss_dssp TTTCCEEEE
T ss_pred CCCCcEeeE
Confidence 999998653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=2.2e-15 Score=156.63 Aligned_cols=269 Identities=9% Similarity=0.087 Sum_probs=196.1
Q ss_pred eeCCCeEEEEecCCCcEEEEECCCCcE---EEEEE--cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC--cEEEEE
Q 003331 482 LKDSDIYLFVGSHSHKFICADAKRSSV---LWEIK--LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG--DIYWTF 554 (829)
Q Consensus 482 ~~d~~~~l~igs~~g~l~~~d~~tg~~---~w~~~--~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG--~~~w~~ 554 (829)
++.++..|+.|+ +|.|..||..+++. ..... .+.....+..+++++..+++++.|+.|..||..+. +....+
T Consensus 59 fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 137 (337)
T d1gxra_ 59 ISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137 (337)
T ss_dssp ECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred ECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccc
Confidence 344677888887 78899999876532 22222 22333456788889999999999999999997644 445555
Q ss_pred ecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCc
Q 003331 555 QTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF 634 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g 634 (829)
..+........+.+++..+++++.++.+..||..++++...............+..++..+++++.+|.+..||..+ +
T Consensus 138 ~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~--~ 215 (337)
T d1gxra_ 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--G 215 (337)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--T
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 54444444455666778888899999999999999998877765555555566667678999999999999999988 8
Q ss_pred eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEE
Q 003331 635 HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSF 713 (829)
Q Consensus 635 ~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~ 713 (829)
+.+.......+. .+..+.+++..+++++.++.+..+| .+++..........+......+ .+..++.++.||.|+.|
T Consensus 216 ~~~~~~~~~~~i-~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~--~g~~l~s~s~Dg~i~iw 292 (337)
T d1gxra_ 216 RQLQQHDFTSQI-FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY--CGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEEEEECSSCE-EEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEE
T ss_pred eeecccccccce-EEEEEcccccccceeccccccccccccccccccccccccccceEEECC--CCCEEEEEeCCCeEEEE
Confidence 877776655443 4556677888999999999999999 7776654443333443322111 23468888899999999
Q ss_pred eCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 714 EQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 714 d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
|..+++.+........+....+. .++.++++++.||.|.+||.
T Consensus 293 d~~~~~~~~~~~~~~~v~~~~~s------------~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 293 RTPYGASIFQSKESSSVLSCDIS------------VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEC------------TTSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEccCCCCEEEEEEe------------CCCCEEEEEeCCCeEEEEEE
Confidence 99999999887766655443222 23778999999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=8.8e-15 Score=152.43 Aligned_cols=268 Identities=12% Similarity=0.121 Sum_probs=185.3
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee--ee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV--KC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~--~~ 562 (829)
+++.|+.|+.||.|..||..+++.+.++..+.....+..++++ +.+++++.|+.|..|+..+++........... ..
T Consensus 22 ~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~ 100 (355)
T d1nexb2 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100 (355)
T ss_dssp ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999998877665566677654 68999999999999999999887765543322 22
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC-----------C----------cccccceeecCCCEEEEEecC
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG-----------G----------SIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~-----------~----------~~~~~~~~~~~~~~l~v~t~~ 621 (829)
......+...+.+++.|+.+..||..++......... . ..........++..++.+..+
T Consensus 101 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d 180 (355)
T d1nexb2 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180 (355)
T ss_dssp EEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred ccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeeccc
Confidence 2233444566888999999999999877654322110 0 000111223345788889999
Q ss_pred CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCe
Q 003331 622 GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQ 700 (829)
Q Consensus 622 g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~ 700 (829)
+.+..||..+ ++.+..............+...+..++.++.++.+..+| .++..+..+......... +.. .++.
T Consensus 181 ~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~--~~~-~~~~ 255 (355)
T d1nexb2 181 NTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL--LRL-SDKF 255 (355)
T ss_dssp SCEEEEETTT--TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCE--EEE-CSSE
T ss_pred ceeeeeeccc--ccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccc--ccc-ccce
Confidence 9999999987 777776655555556667777889999999999999999 899988877643322111 112 3568
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
++.++.||.|+.||..++............ ...+... ++.+++++.||.|++||.+++
T Consensus 256 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~l~~g~d~~i~vwd~~tg 313 (355)
T d1nexb2 256 LVSAAADGSIRGWDANDYSRKFSYHHTNLS-AITTFYV------------SDNILVSGSENQFNIYNLRSG 313 (355)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECTTCC-CCCEEEE------------CSSEEEEEETTEEEEEETTTC
T ss_pred eeeeecccccccccccccceecccccCCce-EEEEEcC------------CCCEEEEEeCCEEEEEECCCC
Confidence 899999999999999998877655433222 2111111 344455556899999999876
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.3e-14 Score=150.79 Aligned_cols=273 Identities=10% Similarity=0.054 Sum_probs=190.2
Q ss_pred eeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE---EEEe--cCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC--
Q 003331 518 IECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY---WTFQ--TCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY-- 590 (829)
Q Consensus 518 ~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~---w~~~--~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg-- 590 (829)
.+.+..+++++.+|++|+ ||.|..||..++... .... .+.....+..+.+++..|++++.|+.|..||....
T Consensus 53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~ 131 (337)
T d1gxra_ 53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131 (337)
T ss_dssp CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--
T ss_pred cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccc
Confidence 345678889988999987 899999998765432 2221 22333344566777888999999999999998754
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE
Q 003331 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
+.......+........+.+++..++.++.++.+..++..+ ++.............+..+..++..+++++.++.+..
T Consensus 132 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i 209 (337)
T d1gxra_ 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 44444444444444555666677888899999999999987 7766655544444456667777889999999999999
Q ss_pred Ec-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccC
Q 003331 671 LD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLS 749 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (829)
+| .+++.+........+.+..... .+..+++++.+|.+..||..+++..........+....+ ..
T Consensus 210 ~d~~~~~~~~~~~~~~~i~~l~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~------------s~ 275 (337)
T d1gxra_ 210 WDLREGRQLQQHDFTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF------------AY 275 (337)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEE------------CT
T ss_pred cccccceeecccccccceEEEEEcc--cccccceeccccccccccccccccccccccccccceEEE------------CC
Confidence 99 8998887777666655432211 345788899999999999998887644433333332221 12
Q ss_pred CCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEEec
Q 003331 750 IDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCIAL 821 (829)
Q Consensus 750 ~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~d~ 821 (829)
++.++++++.||.|++||..++ +........+.+.+ ..+ .+..|+.|+.||.|+.||+
T Consensus 276 ~g~~l~s~s~Dg~i~iwd~~~~-------------~~~~~~~~~~~v~~-~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 276 CGKWFVSTGKDNLLNAWRTPYG-------------ASIFQSKESSSVLS-CDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTC-------------CEEEEEECSSCEEE-EEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCC-------------CEEEEccCCCCEEE-EEEeCCCCEEEEEeCCCeEEEEEE
Confidence 3778999999999999998765 22333333333322 222 2457888999999999986
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.69 E-value=6.9e-15 Score=150.71 Aligned_cols=269 Identities=9% Similarity=-0.021 Sum_probs=193.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEE--EecCCeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWT--FQTCGEVKC 562 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~--~~~~~~~~~ 562 (829)
++..++.++ ++.++.||..+++....+..+.....+..+++++.++++|+.|+.|..||..+++.... +..+.....
T Consensus 28 ~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 106 (311)
T d1nr0a1 28 AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106 (311)
T ss_dssp TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc
Confidence 455666655 45699999999888777766665666778899999999999999999999988875433 443333334
Q ss_pred eeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCE-EEEEecCCeEEEEEccCCCceEEEe
Q 003331 563 QPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDV-LYVASTSGRLTAISVKALPFHTLWL 639 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~-l~v~t~~g~l~~~~~~~~~g~~~w~ 639 (829)
...+.+++..+++++. +..+..|+.++++.+..+..+.....+..+.+++.. ++.++.+|.|..||.++ ++....
T Consensus 107 ~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~--~~~~~~ 184 (311)
T d1nr0a1 107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP--FKFKST 184 (311)
T ss_dssp EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT--BEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc--cccccc
Confidence 4556666777777764 345888999999887776655554555556655554 66688899999999998 887777
Q ss_pred eccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--------ceeecCcccccCCCeEEEEeeCCeE
Q 003331 640 HELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--------PIFAGPCTSFALPSQVLICSRNGSI 710 (829)
Q Consensus 640 ~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--------~~~~~~~~~~~~~~~i~~~t~~g~l 710 (829)
.........+..+.+++..+++++.++.+..|| .++.....+.... .+.+..+ ...+..++.|+.||.|
T Consensus 185 ~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~--s~~~~~l~tgs~Dg~v 262 (311)
T d1nr0a1 185 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW--SPDGTKIASASADKTI 262 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE--CTTSSEEEEEETTSEE
T ss_pred cccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccc--CCCCCEEEEEeCCCeE
Confidence 766555556777777888999999999999999 8888877665322 1222111 1124578888899999
Q ss_pred EEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 711 YSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 711 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+.||.++++++.+++.+......... ....++.+++++.||.|.+||.
T Consensus 263 ~iwd~~t~~~~~~l~~~~~~~~~~~~----------~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 263 KIWNVATLKVEKTIPVGTRIEDQQLG----------IIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEE----------EEECSSCEEEEETTCCEEEEET
T ss_pred EEEECCCCcEEEEEECCCCccceEEE----------EEecCCEEEEEECCCEEEEEeC
Confidence 99999999998877765543221110 1123677889999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=5.3e-14 Score=149.04 Aligned_cols=276 Identities=13% Similarity=0.060 Sum_probs=189.5
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcC------------------CceeeceEEeeCCcEEEEEEeCCEEEEEE
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLE------------------GRIECSAAVLADFSQVVVGCYKGKIYFLD 544 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~------------------~~~~~~~~~~~~~~~v~vg~~dg~l~~~d 544 (829)
+.++..|.+|+ |+.|..||..+|+.+..+... .....+..+++++..+++|+.|+.|..||
T Consensus 71 s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~ 149 (388)
T d1erja_ 71 SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149 (388)
T ss_dssp CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccc
Confidence 33566777776 789999999999887655322 11234567788888999999999999999
Q ss_pred cCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeE
Q 003331 545 YLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRL 624 (829)
Q Consensus 545 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l 624 (829)
..+++.+.....+........+...+..+++++.++.+..||..+.....................++..+++++.+|.+
T Consensus 150 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 229 (388)
T d1erja_ 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229 (388)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred ccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcCCCeE
Confidence 99999988776655544555566677889999999999999999998887766555444444444456788889999999
Q ss_pred EEEEccCCCceEEEeeccC-------CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec-------------
Q 003331 625 TAISVKALPFHTLWLHELE-------VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT------------- 683 (829)
Q Consensus 625 ~~~~~~~~~g~~~w~~~~~-------~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~------------- 683 (829)
..|+..+ +......... .....+..+.+++..+++++.++.+..|| .++........
T Consensus 230 ~i~~~~~--~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T d1erja_ 230 RVWDSET--GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307 (388)
T ss_dssp EEEETTT--CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred EEeeccc--CccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc
Confidence 9999887 7766655432 12234556667788999999999999999 66544322211
Q ss_pred CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCc
Q 003331 684 GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGS 762 (829)
Q Consensus 684 ~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~ 762 (829)
...+....+ ...+..|+.|+.||.|+.||..+|+.+..+..+.. +....... .....+++.++++|+.||.
T Consensus 308 ~~~v~~~~~--s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~------~~~~spd~~~l~s~s~Dg~ 379 (388)
T d1erja_ 308 KDFVLSVAT--TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN------GSSLGPEYNVFATGSGDCK 379 (388)
T ss_dssp SSCEEEEEE--CGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS------SCTTCTTCEEEEEEETTSE
T ss_pred cceEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEec------CcccCCCCCEEEEEeCCCE
Confidence 111111111 11245788899999999999999999888775443 22211111 0112335788999999999
Q ss_pred EEEEEee
Q 003331 763 IHILRVN 769 (829)
Q Consensus 763 l~~~d~~ 769 (829)
|++|+.+
T Consensus 380 I~iW~~~ 386 (388)
T d1erja_ 380 ARIWKYK 386 (388)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9999875
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.1e-14 Score=146.73 Aligned_cols=284 Identities=15% Similarity=0.110 Sum_probs=200.7
Q ss_pred EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC
Q 003331 511 EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590 (829)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg 590 (829)
.+..+...+.+..+++++..+++|+.|+.|..||..+|+.+.++..+........+.+++..+..+..++.+..++....
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence 44555555567778888889999999999999999999999888766555555566777788888888888999998888
Q ss_pred eEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEE
Q 003331 591 RCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 591 ~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
+....+...........+..++..++.++.++.+..||..+ ++....+...........+..++..++.++.++.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~ 169 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeeccc--ceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEE
Confidence 77766655555555556666678899999999999999987 7777666655555556667777889999999999999
Q ss_pred Ec-CCCCEEEEeecCCc-eee---cCc---------------ccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcc
Q 003331 671 LD-SSGSIIWRCRTGGP-IFA---GPC---------------TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 671 ~d-~~g~~~w~~~~~~~-~~~---~~~---------------~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
++ .+++.+..+..... +.. .+. .....+..+..++.||.|+.||..+++.+.++..+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 249 (317)
T d1vyhc1 170 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249 (317)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred EeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 99 78877765543221 110 000 00112345778889999999999999998877654332
Q ss_pred ccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEE
Q 003331 731 TASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVF 808 (829)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~ 808 (829)
...... ...+.++++++.||.|.+||..++ +.+..+......+.+..+ .+..|+
T Consensus 250 v~~~~~-----------~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~h~~~V~~~~~s~~~~~l~ 305 (317)
T d1vyhc1 250 VRGVLF-----------HSGGKFILSCADDKTLRVWDYKNK-------------RCMKTLNAHEHFVTSLDFHKTAPYVV 305 (317)
T ss_dssp EEEEEE-----------CSSSSCEEEEETTTEEEEECCTTS-------------CCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred EEEEEE-----------CCCCCEEEEEECCCeEEEEECCCC-------------cEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 222111 123778999999999999998765 222233322222222222 346788
Q ss_pred EeeeCCeEEEEe
Q 003331 809 VGCRDDYIYCIA 820 (829)
Q Consensus 809 vg~~~g~l~~~d 820 (829)
.|+.||.|+.||
T Consensus 306 s~s~Dg~i~iWd 317 (317)
T d1vyhc1 306 TGSVDQTVKVWE 317 (317)
T ss_dssp EEETTSEEEEEC
T ss_pred EEeCCCeEEEeC
Confidence 899999999986
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=2.5e-14 Score=146.11 Aligned_cols=269 Identities=8% Similarity=-0.010 Sum_probs=196.0
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeee
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKC 562 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~ 562 (829)
+.++..|+.|+.||.|..||..+++.+..+..+.....+..+.+++..++.+..++.+..++....+....+........
T Consensus 26 sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (317)
T d1vyhc1 26 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 105 (317)
T ss_dssp CSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccce
Confidence 33567899999999999999999999988877666556777888888899999899999999888877665554444445
Q ss_pred eeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeecc
Q 003331 563 QPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 563 ~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
...+..++..+++++.|+.+..||..+++.+..+..+........+..++..++.++.++.+..++..+ ++.+..+..
T Consensus 106 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~--~~~~~~~~~ 183 (317)
T d1vyhc1 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELRE 183 (317)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEEEECC
T ss_pred eeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc--ceeeEEEec
Confidence 556666778899999999999999999998888776655555566667678899999999999999887 655554432
Q ss_pred CCcceee--------------------eeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCe
Q 003331 643 EVPAFAS--------------------LCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQ 700 (829)
Q Consensus 643 ~~~~~~s--------------------~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~ 700 (829)
....... ......+..++.++.++.+..+| .+++.+.++.... .+..... ...+..
T Consensus 184 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 261 (317)
T d1vyhc1 184 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF--HSGGKF 261 (317)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--CSSSSC
T ss_pred CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE--CCCCCE
Confidence 2211111 11122356788888999999999 8898887765433 2222211 112346
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
++.++.||.|..||..+++.+..+..+.. +....+ ..++..+++++.||.|++||
T Consensus 262 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~------------s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 262 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF------------HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEE------------CSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEE------------cCCCCEEEEEeCCCeEEEeC
Confidence 88889999999999999999888775433 322221 12377899999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.8e-13 Score=144.80 Aligned_cols=311 Identities=11% Similarity=0.030 Sum_probs=188.5
Q ss_pred CCCcEEEEECCCCcEEE----EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-----------
Q 003331 494 HSHKFICADAKRSSVLW----EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG----------- 558 (829)
Q Consensus 494 ~~g~l~~~d~~tg~~~w----~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~----------- 558 (829)
.++.+..|++...+... ....+...+.+..+++++.+|.+|+ |+.|..||..+|+.+.++....
T Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (388)
T d1erja_ 36 TNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114 (388)
T ss_dssp CSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------
T ss_pred CCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccccccccccccc
Confidence 34445556655443322 1112444556788888988888886 8899999999999887654321
Q ss_pred -------eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 559 -------EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 559 -------~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
.......+.+++..|++|+.||.++.||..+++.+.....+...........++..++.++.++.+..||..+
T Consensus 115 ~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 194 (388)
T d1erja_ 115 SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194 (388)
T ss_dssp ----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccc
Confidence 1123345666778899999999999999999999888766555555556666678899999999999999887
Q ss_pred CCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC--------ceeecCcccccCCCeEE
Q 003331 632 LPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG--------PIFAGPCTSFALPSQVL 702 (829)
Q Consensus 632 ~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~--------~~~~~~~~~~~~~~~i~ 702 (829)
.....................++..+++++.++.+..++ .++....+..... .+.+..+ ...+..++
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~ 270 (388)
T d1erja_ 195 --GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF--TRDGQSVV 270 (388)
T ss_dssp --TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEE--CTTSSEEE
T ss_pred --cccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEE--CCCCCEEE
Confidence 665555544433322222233566788899999999999 8888877654321 1222111 11245688
Q ss_pred EEeeCCeEEEEeCCCCcEEEEEecCCcccccc-ccccccccccccccCCCcEEEEEccCCcEEEEEeecCcccccccccc
Q 003331 703 ICSRNGSIYSFEQESGNLLWEYSVGDPITASA-YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKD 781 (829)
Q Consensus 703 ~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~ 781 (829)
+++.||.|..||..+++............... .......+.......++.++++|+.||.|++||..++.
T Consensus 271 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~--------- 341 (388)
T d1erja_ 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--------- 341 (388)
T ss_dssp EEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC---------
T ss_pred EEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------
Confidence 88999999999998876543322111100000 00000000011112347789999999999999988662
Q ss_pred ccceeeeeeccCCcccccceE--------ECCEEEEeeeCCeEEEEecc
Q 003331 782 HMVQEFAKLELQGDIFSSPVM--------IGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 782 ~~~~~~~~~~~~~~~~~s~~~--------~~~~l~vg~~~g~l~~~d~~ 822 (829)
....+..+...+.+... .+..|..|+.||.|+.||.+
T Consensus 342 ----~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 342 ----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ----EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ----EEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 22222221111111111 24467778999999999975
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=2.3e-13 Score=141.42 Aligned_cols=274 Identities=12% Similarity=0.113 Sum_probs=181.4
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
++..++++|++|+.|+.|..||..+++.+.++..+........+.+ ++.+++++.|+.++.|+..+++...........
T Consensus 18 c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~ 96 (355)
T d1nexb2 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96 (355)
T ss_dssp EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-TTEEEEEETTCCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CCEEEEEeccccccccccccccccccccccccc
Confidence 4556778999999999999999999999999887655444455554 578999999999999999999888776554322
Q ss_pred c--ccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC------------Ccce---------eeeeeeecCCEE
Q 003331 603 F--GSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE------------VPAF---------ASLCITSANRHV 659 (829)
Q Consensus 603 ~--~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~------------~~~~---------~s~~~~~~~~~l 659 (829)
. .......+...++.++.++.+..|+..+ +......... .... .......++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (355)
T d1nexb2 97 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 174 (355)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECCC-------------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEE
T ss_pred ccccccccccccceeeeecCCCcEEEEEccC--Cceeccccccceeccceeccccccceeeeeeecccccccccccccee
Confidence 2 1222333345678888999999999876 3322211100 0000 111233456788
Q ss_pred EEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCcccccccccc
Q 003331 660 ICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDE 738 (829)
Q Consensus 660 ~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 738 (829)
+.+..++.+..+| .+++.+.............. ....+..++.++.+|.|+.||..++..+..+..+........
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~--- 250 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI-YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLR--- 250 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-EETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEE---
T ss_pred eeecccceeeeeecccccceeeeecccccccccc-ccccceeeecccccceEEeeeccccccccccccccccccccc---
Confidence 8888899999999 88877766543322111111 112356788999999999999999999888765443322211
Q ss_pred ccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCccccc-ceEECCEEEEeeeCCeEE
Q 003331 739 HLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSS-PVMIGGRVFVGCRDDYIY 817 (829)
Q Consensus 739 ~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~l~vg~~~g~l~ 817 (829)
.+++.+++++.||.|++||.++.. +.+. .. ...+... ....++.+++++.||.|+
T Consensus 251 ----------~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~-~~-~~~~~~~~~~~~~~~~l~~g~d~~i~ 306 (355)
T d1nexb2 251 ----------LSDKFLVSAAADGSIRGWDANDYS------------RKFS-YH-HTNLSAITTFYVSDNILVSGSENQFN 306 (355)
T ss_dssp ----------ECSSEEEEECTTSEEEEEETTTCC------------EEEE-EE-CTTCCCCCEEEECSSEEEEEETTEEE
T ss_pred ----------cccceeeeeecccccccccccccc------------eecc-cc-cCCceEEEEEcCCCCEEEEEeCCEEE
Confidence 126789999999999999987541 1111 11 1122221 122467778888899999
Q ss_pred EEeccccccc
Q 003331 818 CIALETQHLE 827 (829)
Q Consensus 818 ~~d~~tg~~~ 827 (829)
.||.++|++.
T Consensus 307 vwd~~tg~~~ 316 (355)
T d1nexb2 307 IYNLRSGKLV 316 (355)
T ss_dssp EEETTTCCBC
T ss_pred EEECCCCCEE
Confidence 9999998864
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.6e-13 Score=139.03 Aligned_cols=264 Identities=11% Similarity=0.066 Sum_probs=186.4
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++.+|+.|+.||.|+.||..+|+++..+..+.....+..+. ++.+++++.|+.+..|+....................
T Consensus 26 ~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~--~~~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (342)
T d2ovrb2 26 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM 103 (342)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC--CCccccceecccccccccccccceecccccceeEeee
Confidence 35689999999999999999999988776665544455554 3589999999999999988777766554433332222
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCC
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEV 644 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~ 644 (829)
.. ....+..+..++.+..++..+++............... ......+..++.++.+..+|... ++.+.......
T Consensus 104 ~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~d~~~--~~~~~~~~~~~ 177 (342)
T d2ovrb2 104 HL--HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPET--ETCLHTLQGHT 177 (342)
T ss_dssp EE--ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE--EECSSCEEEEETTSCEEEEEGGG--TEEEEEECCCS
T ss_pred ec--ccccccccccceeEEEeecccccceeeeecccccceee--ccccceeeeecCCCeEEEeeccc--ceeeEEEcCcc
Confidence 22 34677888889999999999998877765543332222 22346788889999999999887 66666554433
Q ss_pred cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEE
Q 003331 645 PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 645 ~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~ 723 (829)
. .......++..++.++.+|.|..+| .+++.+............ +.. .++.++.++.||.|+.||..+++....
T Consensus 178 ~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~--~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~ 252 (342)
T d2ovrb2 178 N--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MEL-KDNILVSGNADSTVKIWDIKTGQCLQT 252 (342)
T ss_dssp S--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEE--EEE-ETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred c--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeE--Eec-CCCEEEEEcCCCEEEEEeccccccccc
Confidence 2 2334445788999999999999999 888888766544332221 111 256889999999999999998888766
Q ss_pred EecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecC
Q 003331 724 YSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLD 771 (829)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~ 771 (829)
+............ ...+++++++++.||.|.+||.+++
T Consensus 253 ~~~~~~~~~~~~~----------~~~~~~~~~s~s~Dg~i~iwd~~tg 290 (342)
T d2ovrb2 253 LQGPNKHQSAVTC----------LQFNKNFVITSSDDGTVKLWDLKTG 290 (342)
T ss_dssp ECSTTSCSSCEEE----------EEECSSEEEEEETTSEEEEEETTTC
T ss_pred ccccceeeeceee----------cccCCCeeEEEcCCCEEEEEECCCC
Confidence 6543221111100 1123678999999999999999876
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.63 E-value=7.4e-14 Score=142.90 Aligned_cols=280 Identities=8% Similarity=-0.045 Sum_probs=186.8
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--ecc
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPC 598 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~ 598 (829)
...++++++.++.++ ++.++.||..+++....+..+.....+..+.+++.+|.+|+.||.|+.||..+++...+ +..
T Consensus 22 ~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp CCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence 345667777777764 77899999999988887766655556666777888999999999999999988765433 333
Q ss_pred CCcccccceeecCCCEEEEEecC--CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE-EEEEeeCCeEEEEc-CC
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTS--GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH-VICCLVDGHVVALD-SS 674 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~--g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~-l~~~~~~g~i~~~d-~~ 674 (829)
+........+..++..+++++.+ ..+.+|+.++ ++.............+..+.+++.. ++.|+.++.|.+|| .+
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~--~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~ 178 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 178 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred ccCcccccccccccccccccccccccccccccccc--ccccccccccccccccccccccceeeecccccccccccccccc
Confidence 34444555666666777777643 4477888887 7766666554444456666666664 66688899999999 88
Q ss_pred CCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 675 GSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 675 g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
++......... ++......+ .+..+++++.||.+..||..+++....++........ ... .+.......++.+
T Consensus 179 ~~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~--h~~--~V~~~~~s~~~~~ 252 (311)
T d1nr0a1 179 FKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA--HSG--SVFGLTWSPDGTK 252 (311)
T ss_dssp BEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS--SSS--CEEEEEECTTSSE
T ss_pred cccccccccccccccccccCc--ccccccccccccccccccccccccccccccccccccc--ccc--cccccccCCCCCE
Confidence 88776665432 332222111 2456778888999999999999888776533211000 000 0000111234789
Q ss_pred EEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccc---cceEECCEEEEeeeCCeEEEEecc
Q 003331 754 VCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS---SPVMIGGRVFVGCRDDYIYCIALE 822 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~l~vg~~~g~l~~~d~~ 822 (829)
+++|+.||.|++||.+++ +....+........ +....++.|+.++.||.|..||++
T Consensus 253 l~tgs~Dg~v~iwd~~t~-------------~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 253 IASASADKTIKIWNVATL-------------KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEETTSEEEEEETTTT-------------EEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEEeCCCeEEEEECCCC-------------cEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999999999999998865 33333333322211 222347789999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.3e-13 Score=142.44 Aligned_cols=278 Identities=14% Similarity=0.104 Sum_probs=188.2
Q ss_pred EEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCe
Q 003331 512 IKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYR 591 (829)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~ 591 (829)
++.+...+.+ +++.++++|++|+.|+.|+.||..+|+++.++..+.....+..+.+ +.+++++.|+.+..|+.....
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~~~ 88 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGE 88 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTTTE
T ss_pred ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccccccc
Confidence 4444432223 4666788999999999999999999999988776554444444554 689999999999999998887
Q ss_pred EEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEE
Q 003331 592 CVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVAL 671 (829)
Q Consensus 592 ~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~ 671 (829)
.................. ...+..+..++.+..++..+ ++........... ..........+..++.++.+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~i~~~ 162 (342)
T d2ovrb2 89 CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET--GQCLHVLMGHVAA--VRCVQYDGRRVVSGAYDFMVKVW 162 (342)
T ss_dssp EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS--CCEEEEEECCSSC--EEEEEECSSCEEEEETTSCEEEE
T ss_pred ceecccccceeEeeeecc--cccccccccceeEEEeeccc--ccceeeeeccccc--ceeeccccceeeeecCCCeEEEe
Confidence 776655444333333333 37788888899999999887 6655554433322 22333456678888899999999
Q ss_pred c-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCC
Q 003331 672 D-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSI 750 (829)
Q Consensus 672 d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 750 (829)
| ..++.+..+......... . ...+..++.++.||.|+.||..+++.+..+..+........ .+
T Consensus 163 d~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-------------~~ 226 (342)
T d2ovrb2 163 DPETETCLHTLQGHTNRVYS--L-QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME-------------LK 226 (342)
T ss_dssp EGGGTEEEEEECCCSSCEEE--E-EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEE-------------EE
T ss_pred ecccceeeEEEcCccccccc--c-cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEe-------------cC
Confidence 9 777776665433211111 1 11345788999999999999999999877765544332211 12
Q ss_pred CcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC---CcccccceEECCEEEEeeeCCeEEEEeccccccc
Q 003331 751 DRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ---GDIFSSPVMIGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 751 ~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++++++++.||.|++||..... ........ ..........++.++.++.||.|+.||.++|+..
T Consensus 227 ~~~l~s~s~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i 293 (342)
T d2ovrb2 227 DNILVSGNADSTVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293 (342)
T ss_dssp TTEEEEEETTSCEEEEETTTCC-------------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEeccccc-------------ccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEE
Confidence 6789999999999999987542 11111111 1111122234678888999999999999998753
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.61 E-value=3e-13 Score=139.87 Aligned_cols=268 Identities=9% Similarity=-0.037 Sum_probs=189.0
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEE----EEecCC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYW----TFQTCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w----~~~~~~ 558 (829)
+.++..|..|+.||.|..||..+++....+..+.....+..+.+++..+++++.|+.+..++.......+ ....+.
T Consensus 64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
T d1tbga_ 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred CCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccc
Confidence 3456789999999999999999999999888777666678888899999999999999999976654322 222222
Q ss_pred eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEE
Q 003331 559 EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW 638 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w 638 (829)
....... ......+.....+.....++..+.........................++.+..++.+..||..+ ++.+.
T Consensus 144 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~--~~~~~ 220 (340)
T d1tbga_ 144 GYLSCCR-FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCRQ 220 (340)
T ss_dssp SCEEEEE-EEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--TEEEE
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCC--CcEEE
Confidence 2222222 22345666677777788888777666555544443333444445567788899999999999988 88888
Q ss_pred eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC---ceeecCcccccCCCeEEEEeeCCeEEEEe
Q 003331 639 LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG---PIFAGPCTSFALPSQVLICSRNGSIYSFE 714 (829)
Q Consensus 639 ~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~---~~~~~~~~~~~~~~~i~~~t~~g~l~~~d 714 (829)
.+........+.++.+++..+++++.++.+..++ .+......+.... .+....+ ...+..+++|+.||.|+.||
T Consensus 221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~g~~dg~i~iwd 298 (340)
T d1tbga_ 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF--SKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE--CSSSCEEEEEETTSCEEEEE
T ss_pred EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEE--CCCCCEEEEEECCCEEEEEE
Confidence 7766555556677777888999999999999999 7766655543222 1222111 11245688889999999999
Q ss_pred CCCCcEEEEEecCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 715 QESGNLLWEYSVGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 715 ~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
..+++.+..+..+.. +....+. .++.++++|+.||.|++||
T Consensus 299 ~~~~~~~~~~~~H~~~V~~l~~s------------~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 299 ALKADRAGVLAGHDNRVSCLGVT------------DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEC------------TTSSCEEEEETTSCEEEEC
T ss_pred CCCCcEEEEEcCCCCCEEEEEEe------------CCCCEEEEEccCCEEEEeC
Confidence 999999887764333 3222221 2377899999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-12 Score=131.60 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=179.2
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcc
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSI 602 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~ 602 (829)
+++.++.+|++|+.||.|..||..+++++.++..+.....+..+ ++..|++|+.|+.+..|+..++............
T Consensus 20 c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~ 97 (293)
T d1p22a2 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA 97 (293)
T ss_dssp EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC
T ss_pred EEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccc
Confidence 35567889999999999999999999999988765443333333 5688999999999999999999887776554332
Q ss_pred cccceeecCCCEEEEEecCCeEEEEEccCCCceEEE-eeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEE
Q 003331 603 FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLW-LHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWR 680 (829)
Q Consensus 603 ~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w-~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~ 680 (829)
... .....+.+..+..++.+..|+..+....... ....... ...........+..++.++.+..+| .+++.+..
T Consensus 98 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~ 173 (293)
T d1p22a2 98 VLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA--AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 173 (293)
T ss_dssp EEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSS--CEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred ccc--ccccccceeecccccceeEeecccccccccccccccccc--ccccceecccccccccCCCceeeecCCCCcEEEE
Confidence 222 2223477888888999999997762221111 1111111 1122333566788888999999999 88988877
Q ss_pred eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccC
Q 003331 681 CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSS 760 (829)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 760 (829)
+......... + ...+..+..++.||.|..||..+++.+............. ...+..+++++.|
T Consensus 174 ~~~~~~~v~~--~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~-------------~~~~~~l~sg~~d 237 (293)
T d1p22a2 174 LNGHKRGIAC--L-QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-------------RFDNKRIVSGAYD 237 (293)
T ss_dssp EECCSSCEEE--E-EEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE-------------ECCSSEEEEEETT
T ss_pred Eccccccccc--c-cCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeec-------------cccceEEEEEcCC
Confidence 6543321111 1 1124578889999999999999999887765444332211 1226789999999
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceEECCEEEEeeeCCeEEEEe
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVMIGGRVFVGCRDDYIYCIA 820 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~vg~~~g~l~~~d 820 (829)
|.|++||............ ......+.-+...+.+...++..|+.++.||.|..||
T Consensus 238 g~i~iwd~~~~~~~~~~~~----~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 238 GKIKVWDLVAALDPRAPAG----TLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SCEEEEEHHHHTSTTSCTT----TTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred CEEEEEECCCCccccccCC----ceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 9999999875422111000 0112222222223334444667899999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=4.1e-12 Score=131.02 Aligned_cols=280 Identities=12% Similarity=0.017 Sum_probs=182.4
Q ss_pred EEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCC
Q 003331 511 EIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNY 590 (829)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg 590 (829)
++..+...+.+..+++++..+++|+.||.|..||..+++.+..+..+........+.+++..+++++.++.+..++....
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~ 129 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSS
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccccc
Confidence 34445554556778888889999999999999999999999988876665566677778889999999999999987654
Q ss_pred eEEE----eeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 591 RCVY----KLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 591 ~~~w----~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
...+ ............ ....+..+.....+.....+...+ .........................++.++.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 206 (340)
T d1tbga_ 130 EGNVRVSRELAGHTGYLSCC-RFLDDNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA 206 (340)
T ss_dssp CSCCCEEEEECCCSSCEEEE-EEEETTEEEEEETTTEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred ccccccceeccccccccccc-cccccccccccccccccccccccc--ccccccccccceeEeeeccccccceeEEeecCc
Confidence 3222 121111111111 222245666666677666666554 333333333333333444455677888889999
Q ss_pred eEEEEc-CCCCEEEEeecCC-ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc---cccccccccccc
Q 003331 667 HVVALD-SSGSIIWRCRTGG-PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP---ITASAYIDEHLQ 741 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~---~~~~~~~~~~~~ 741 (829)
.+..|| .+++.+..+.... .+.+..+. ..+..+++++.||.++.||..+.+....+..... +....
T Consensus 207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~--p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~------- 277 (340)
T d1tbga_ 207 SAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS------- 277 (340)
T ss_dssp EEEEEETTTTEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-------
T ss_pred eEEEEECCCCcEEEEEeCCCCCeEEEEEC--CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE-------
Confidence 999999 8898887766432 23222111 1245788889999999999998887765543222 11111
Q ss_pred cccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEeeeCCeEEEE
Q 003331 742 LKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGCRDDYIYCI 819 (829)
Q Consensus 742 ~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~~~g~l~~~ 819 (829)
...++.++++|+.+|.|++||..++ +....+..+...+.+..+ .+..|+.|+.||.|+.|
T Consensus 278 -----~s~~~~~l~~g~~dg~i~iwd~~~~-------------~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 278 -----FSKSGRLLLAGYDDFNCNVWDALKA-------------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp -----ECSSSCEEEEEETTSCEEEEETTTC-------------CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred -----ECCCCCEEEEEECCCEEEEEECCCC-------------cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence 1233789999999999999998765 233333322222233333 24578889999999999
Q ss_pred e
Q 003331 820 A 820 (829)
Q Consensus 820 d 820 (829)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.52 E-value=2.2e-11 Score=123.15 Aligned_cols=265 Identities=12% Similarity=0.127 Sum_probs=180.1
Q ss_pred eEEEEe-cCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 487 IYLFVG-SHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 487 ~~l~ig-s~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
.++|+. +.++.|..||++|++++.+++.+... ....++++++++|+++ .++.|..||..+++.+.++..+..... .
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~-~ 79 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQG-V 79 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEE-E
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEEECCCCc-eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccc-c
Confidence 467875 57789999999999999988887654 3567888999888655 578999999999999988877655433 3
Q ss_pred eeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeecc
Q 003331 565 VVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHEL 642 (829)
Q Consensus 565 ~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~ 642 (829)
.+..++..+++ +..++.++.+|..+++....+...... ....+.+++..+++.. .++.+..++..+ ++.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVT--KAVINTVSV 156 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE-EEEEECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEEC
T ss_pred ccccccccccccccccceeeecccccceeeeeccccccc-eEEEeecCCCeeeeeeccccceeeeeccc--cceeeeccc
Confidence 45555666665 455678999999999988887665433 2344555567776655 466788888887 666665544
Q ss_pred CCcceeeeeeeecCCEEEEEeeCCe-EEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee---CCeEEEEeCCC
Q 003331 643 EVPAFASLCITSANRHVICCLVDGH-VVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR---NGSIYSFEQES 717 (829)
Q Consensus 643 ~~~~~~s~~~~~~~~~l~~~~~~g~-i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~---~g~l~~~d~~t 717 (829)
... .....+.++++.+++++.+.. +..++ ...+...............+ ...+..+|+++. ++.|+.||..+
T Consensus 157 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~v~~~~~~~~~v~v~D~~t 233 (301)
T d1l0qa2 157 GRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAV--NPEGTKAYVTNVDKYFNTVSMIDTGT 233 (301)
T ss_dssp CSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEE--CTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred CCC-ceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeec--cccccccccccccceeeeeeeeecCC
Confidence 332 234456667888888876644 44555 55555555554443322211 122446666654 36799999999
Q ss_pred CcEEEEEecCCccccccccccccccccccccCCCcEEEE-EccCCcEEEEEeecC
Q 003331 718 GNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCI-CTSSGSIHILRVNLD 771 (829)
Q Consensus 718 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~G~l~~~d~~~~ 771 (829)
++++..+..+.......+. +++.++|+ +..++.|.+||.+++
T Consensus 234 ~~~~~~~~~~~~~~~va~s------------pdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 234 NKITARIPVGPDPAGIAVT------------PDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TEEEEEEECCSSEEEEEEC------------TTSSEEEEEETTTTEEEEEETTTT
T ss_pred CeEEEEEcCCCCEEEEEEe------------CCCCEEEEEECCCCeEEEEECCCC
Confidence 9998887766544322222 23677765 556889999999876
|
| >d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Peptidyl carrier domain domain: Peptidyl carrier protein (PCP), thioester domain species: Bacillus brevis [TaxId: 1393]
Probab=99.50 E-value=9.4e-15 Score=111.54 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=62.8
Q ss_pred cccccHHHHHHHHHHhcccCcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHH
Q 003331 284 ETKASDLLQVIRKAFGHALMVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALL 351 (829)
Q Consensus 284 ~~~~~~~~~~l~~~~~~~l~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~ 351 (829)
.+|.+++|+.|+++|+++|+.+.++.+++||++|||||.|++++++| .+++..+|++||+++||++|.
T Consensus 2 ~~P~~~~E~~l~~i~~~vL~~~~i~~~~~f~~lG~dSl~a~~l~~~i~~~~~~~l~~~~l~~~pTi~~LA~~i~ 75 (76)
T d2gdwa1 2 VAPTNAVESKLAEIWERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVA 75 (76)
T ss_dssp CCCCSHHHHHHHHHHHHHTTSSCCCTTTTSSTTTCTTHHHHHHHHHHHHTTSSCCTTHHHHHSCSHHHHHHHHS
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCCCCCCCHHHcCCChHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHHhc
Confidence 35778999999999999999999999999999999999999999875 478899999999999999885
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.2e-11 Score=122.14 Aligned_cols=257 Identities=11% Similarity=0.045 Sum_probs=173.8
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeee
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQP 564 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~ 564 (829)
++..|+.|+.||.|..||..+++++..+..+.....+ +..++..+++|+.|+.+..|+..++...............
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~--v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~- 100 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC--LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLH- 100 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEE-
T ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEee--eecccceeeccccccccccccccccccccccccccccccc-
Confidence 4678999999999999999999999888766554333 4446789999999999999999999888766544433222
Q ss_pred eeecCCCEEEEeccCCeEEEEEcCCCeEEEe---eccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec
Q 003331 565 VVDAPRQLIWCGSHDHNLYALDFRNYRCVYK---LPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 565 ~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~---~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
.....+.+..+..++.+..||..+...... ...+..... ........++.++.++.+..||..+ ++.+....
T Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~s~d~~i~~~d~~~--~~~~~~~~ 175 (293)
T d1p22a2 101 -LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTST--CEFVRTLN 175 (293)
T ss_dssp -EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE--EEEEETTEEEEEETTSEEEEEETTT--CCEEEEEE
T ss_pred -ccccccceeecccccceeEeeccccccccccccccccccccc--cceecccccccccCCCceeeecCCC--CcEEEEEc
Confidence 223456788888899999999877543222 222222222 2222347788888999999999987 77777665
Q ss_pred cCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCc-
Q 003331 642 LEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGN- 719 (829)
Q Consensus 642 ~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~- 719 (829)
...... ..+...+..++.++.++.+..|| .+++.+............. ......++.++.||.|+.||..++.
T Consensus 176 ~~~~~v--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~---~~~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 176 GHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI---RFDNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE---ECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred cccccc--ccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeec---cccceEEEEEcCCCEEEEEECCCCcc
Confidence 443322 23334577899999999999999 8888876665433322211 1234578889999999999865432
Q ss_pred --------EEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcEEEEE
Q 003331 720 --------LLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILR 767 (829)
Q Consensus 720 --------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d 767 (829)
.+-.+..+....... ..++..+++++.||.|.+||
T Consensus 251 ~~~~~~~~~~~~~~~H~~~V~~v-------------~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 251 PRAPAGTLCLRTLVEHSGRVFRL-------------QFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCE-------------EECSSCEEECCSSSEEEEEC
T ss_pred ccccCCceeeEEecCCCCCEEEE-------------EEcCCEEEEEecCCEEEEeC
Confidence 222222221111111 11367899999999999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=8.7e-12 Score=128.42 Aligned_cols=263 Identities=10% Similarity=0.040 Sum_probs=171.5
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEecCCee---
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEV--- 560 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~--- 560 (829)
.++++++.+++|..||.++++++..+..+. .......+++||+++|+. +.++.|+.||..+|+++++.......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 578889999999999999999999887653 223467888998888764 56899999999999999987654321
Q ss_pred --eeeeeeecCCCEEEEec------------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEE
Q 003331 561 --KCQPVVDAPRQLIWCGS------------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTA 626 (829)
Q Consensus 561 --~~~~~~~~~~~~i~~gs------------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~ 626 (829)
.....+.++++.++++. .+..+..+|..+++.++.+...... ....+++++..+++++. ....
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-TMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-CCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCc-eEEEEcCCCCEEEEEcC--Ccce
Confidence 12334566677777764 3467889999999999888765443 34556676778888764 4677
Q ss_pred EEccCCCceEEEeeccCCcce---ee---eee---eecCCEEEE--------------EeeCCeEEEEc-CCCCEEEEee
Q 003331 627 ISVKALPFHTLWLHELEVPAF---AS---LCI---TSANRHVIC--------------CLVDGHVVALD-SSGSIIWRCR 682 (829)
Q Consensus 627 ~~~~~~~g~~~w~~~~~~~~~---~s---~~~---~~~~~~l~~--------------~~~~g~i~~~d-~~g~~~w~~~ 682 (829)
||..+ ++..+......... .. ..+ ....+.... ++.++.+..++ .+|.......
T Consensus 159 ~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
T d1pbyb_ 159 MDPEA--GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EETTT--TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred eeeec--CcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence 89887 77777664432110 00 000 001111111 11234566777 6666543211
Q ss_pred --cCCceeecCcccccCCC-eEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc
Q 003331 683 --TGGPIFAGPCTSFALPS-QVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS 759 (829)
Q Consensus 683 --~~~~~~~~~~~~~~~~~-~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 759 (829)
......... ...++ .++.. ++.+..||.++++.++....+..+....+. .++.++|+++.
T Consensus 237 ~~~~~~~~~~~---~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s------------~dG~~l~v~~~ 299 (337)
T d1pbyb_ 237 RIMDVFYFSTA---VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVS------------TDGSTVWLGGA 299 (337)
T ss_dssp EECSSCEEEEE---ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEEC------------TTSCEEEEESB
T ss_pred cCCCcceEEEE---ecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEEC------------CCCCEEEEEeC
Confidence 111111111 11223 34433 578999999999999988876554433222 23889999999
Q ss_pred CCcEEEEEeecC
Q 003331 760 SGSIHILRVNLD 771 (829)
Q Consensus 760 ~G~l~~~d~~~~ 771 (829)
+|.|.+||..+.
T Consensus 300 ~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 300 LGDLAAYDAETL 311 (337)
T ss_dssp SSEEEEEETTTC
T ss_pred CCcEEEEECCCC
Confidence 999999999865
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.44 E-value=3.3e-11 Score=126.27 Aligned_cols=229 Identities=11% Similarity=0.015 Sum_probs=155.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEE--EEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec--CCe
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVL--WEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT--CGE 559 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~--w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~--~~~ 559 (829)
.++..|.+|+.++.|..||..+++.. ..+..+...+.+..+++++++|++++.|+.|+.||..++........ +..
T Consensus 17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 96 (371)
T d1k8kc_ 17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96 (371)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccc
Confidence 35668888999999999999888643 44555555566778888999999999999999999988776544433 223
Q ss_pred eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeecc----CCcccccceeecCCCEEEEEecCCeEEEEEccCCCc-
Q 003331 560 VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPC----GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPF- 634 (829)
Q Consensus 560 ~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~----~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g- 634 (829)
......+.+++..+++++.++.+..|+...+...+.... ......+..+.+++..+.+++.+|.+..|+......
T Consensus 97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~ 176 (371)
T d1k8kc_ 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccc
Confidence 334445667788899999999988887766544433221 222333455566678888899999999999764211
Q ss_pred ---------------eEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCC-ceeecCcccccC
Q 003331 635 ---------------HTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGG-PIFAGPCTSFAL 697 (829)
Q Consensus 635 ---------------~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~-~~~~~~~~~~~~ 697 (829)
..+...........+..+.+++..+++++.++.|..|| .+++.+..+.... ++.+.. ...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~---fs~ 253 (371)
T d1k8kc_ 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT---FIT 253 (371)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE---EEE
T ss_pred cccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeee---ecC
Confidence 11111112222234556777888999999999999999 8888877665433 333322 234
Q ss_pred CCeEEEEeeCCeEEEEeC
Q 003331 698 PSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 698 ~~~i~~~t~~g~l~~~d~ 715 (829)
++.+++++.|+.+..|..
T Consensus 254 d~~~la~g~d~~~~~~~~ 271 (371)
T d1k8kc_ 254 ESSLVAAGHDCFPVLFTY 271 (371)
T ss_dssp TTEEEEEETTSSCEEEEE
T ss_pred CCCEEEEEcCCceEEEEe
Confidence 677777777776555443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.44 E-value=8.8e-12 Score=126.27 Aligned_cols=284 Identities=11% Similarity=-0.020 Sum_probs=168.8
Q ss_pred CcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEec-CCeeeeeeeeecCCCEEEEeccCCeEEE
Q 003331 506 SSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQT-CGEVKCQPVVDAPRQLIWCGSHDHNLYA 584 (829)
Q Consensus 506 g~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~i~~gs~~g~l~~ 584 (829)
|+..-....+...+.+..+++++.+|++|+.|+.|..||.++|+.+..+.. +........+.+ ++.+++++.|+.+..
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGDLFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSCEEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cceeecccceeeEEE
Confidence 444444555666566778888999999999999999999999998866532 333334444554 356777778999999
Q ss_pred EEcCCCeEEEeec---cCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEE
Q 003331 585 LDFRNYRCVYKLP---CGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVIC 661 (829)
Q Consensus 585 ~d~~tg~~~w~~~---~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~ 661 (829)
|+........... ..........+..++. +++++.++.+..|+... ....... .......+.+++..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~~~~~i~~~~~~~-----~~~~~~~-~~~~~~~~s~~~~~l~~ 153 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAACYKHIAIYSHGK-----LTEVPIS-YNSSCVALSNDKQFVAV 153 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEEESSEEEEEETTE-----EEEEECS-SCEEEEEECTTSCEEEE
T ss_pred eccCCccccccccccccccccccccccccccc-ccccccccccccccccc-----ccccccc-ccccccccccccccccc
Confidence 9865432110000 0111112233444334 44445566788887442 1222211 11234556677889999
Q ss_pred EeeCCeEEEEc-CCCCEEEE--eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEec----CCcccccc
Q 003331 662 CLVDGHVVALD-SSGSIIWR--CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSV----GDPITASA 734 (829)
Q Consensus 662 ~~~~g~i~~~d-~~g~~~w~--~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~----~~~~~~~~ 734 (829)
++.++.+..+| .+++.... ......+....+ ...+..+++++.+|.|+.||..++........ ...+....
T Consensus 154 g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 231 (299)
T d1nr0a2 154 GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF--SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS 231 (299)
T ss_dssp EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE--CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred cccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999 76654422 222233332211 11245688889999999999888765432211 11111111
Q ss_pred ccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeC
Q 003331 735 YIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRD 813 (829)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~l~vg~~~ 813 (829)
..+.+.++++|+.||.|++||.+++.... ...........+.... ..++.|+.++.|
T Consensus 232 ------------~s~~~~~l~sgs~dg~i~iwd~~~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~l~s~s~D 289 (299)
T d1nr0a2 232 ------------WSPDNVRLATGSLDNSVIVWNMNKPSDHP----------IIIKGAHAMSSVNSVIWLNETTIVSAGQD 289 (299)
T ss_dssp ------------ECTTSSEEEEEETTSCEEEEETTCTTSCC----------EEETTSSTTSCEEEEEEEETTEEEEEETT
T ss_pred ------------ccccccceEEEcCCCEEEEEECCCCCcce----------EEEecCCCCCcEEEEEECCCCEEEEEeCC
Confidence 12347889999999999999987552111 1110011111222222 246789999999
Q ss_pred CeEEEEec
Q 003331 814 DYIYCIAL 821 (829)
Q Consensus 814 g~l~~~d~ 821 (829)
|.|..||+
T Consensus 290 ~~i~iWdl 297 (299)
T d1nr0a2 290 SNIKFWNV 297 (299)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEec
Confidence 99999996
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.39 E-value=2.4e-11 Score=125.60 Aligned_cols=279 Identities=10% Similarity=0.017 Sum_probs=170.5
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCee-
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEV- 560 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~- 560 (829)
..+.++++++.++.|..||+.|++++.++..+.. ......+++|+..+|+.+ .++.|+.||..+++.++++......
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~ 85 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG 85 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccc
Confidence 4678899999999999999999999988876533 234677888999888765 5789999999999999887654321
Q ss_pred -----eeeeeeecCCCEEEEecc------------CCeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEEecCC
Q 003331 561 -----KCQPVVDAPRQLIWCGSH------------DHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVASTSG 622 (829)
Q Consensus 561 -----~~~~~~~~~~~~i~~gs~------------~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~t~~g 622 (829)
.....+.+++..+|+++. ++.+..+|..+++......... ..........+++.+++.+ +
T Consensus 86 ~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 163 (346)
T d1jmxb_ 86 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--P 163 (346)
T ss_dssp EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--S
T ss_pred ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--C
Confidence 123445667778887642 4556777776665332221110 0011112233356666654 4
Q ss_pred eEEEEEccCCCceEEEeeccCCcceeeeeeeec----------CCEE----------------EEEeeCCeEEEEc-CCC
Q 003331 623 RLTAISVKALPFHTLWLHELEVPAFASLCITSA----------NRHV----------------ICCLVDGHVVALD-SSG 675 (829)
Q Consensus 623 ~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~----------~~~l----------------~~~~~~g~i~~~d-~~g 675 (829)
.+..++..+ ++............ .....++ .+.+ ..+.....+..+| .++
T Consensus 164 ~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (346)
T d1jmxb_ 164 DIYKMDVKT--GKYTVALPLRNWNR-KGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240 (346)
T ss_dssp SEEEECTTT--CCEEEEECSTTCCC-TTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred cceEEEccC--CCEEEEEecCCCcc-ceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence 477788776 66666554322110 0001111 1111 1122334566677 666
Q ss_pred CEEEEeec--CCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcE
Q 003331 676 SIIWRCRT--GGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRL 753 (829)
Q Consensus 676 ~~~w~~~~--~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (829)
........ ...+.... ....+..+.... .+.+..||..+++.++....+..+....+. .++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~~~~~~va~s------------~DG~~ 305 (346)
T d1jmxb_ 241 KTHTQEFADLTELYFTGL--RSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFD------------KKGDK 305 (346)
T ss_dssp CEEEEEEEECSSCEEEEE--ECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEEC------------SSSSC
T ss_pred ceEEEEeecccceeEEEE--EeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCCCCEEEEEEc------------CCCCE
Confidence 65443221 11121111 112234455444 457999999999999988876654433322 23889
Q ss_pred EEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCc
Q 003331 754 VCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD 795 (829)
Q Consensus 754 l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (829)
+|+++.+|.|.+||.+++ +.+...++++.
T Consensus 306 l~v~~~d~~v~v~D~~t~-------------~~i~~i~~p~g 334 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPDTL-------------EKVKNIKLPGG 334 (346)
T ss_dssp EEEESBSSEEEEEETTTT-------------EEEEEEECSSS
T ss_pred EEEEeCCCcEEEEECccC-------------CEEEEEECCCC
Confidence 999999999999999876 66666676653
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.34 E-value=8.3e-10 Score=115.32 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=152.1
Q ss_pred eeceEEeeCCcEEEEEEeCCEEEEEEcCCCcE--EEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEee
Q 003331 519 ECSAAVLADFSQVVVGCYKGKIYFLDYLTGDI--YWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKL 596 (829)
Q Consensus 519 ~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~ 596 (829)
+.+.++++++..+++++.|+.|..||..+++. +..+..+.....+..+.++++.|++++.|+.++.||..+++.....
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence 34677888989999999999999999988864 3444444444455667778889999999999999999888755444
Q ss_pred cc--CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeec----cCCcceeeeeeeecCCEEEEEeeCCeEEE
Q 003331 597 PC--GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHE----LEVPAFASLCITSANRHVICCLVDGHVVA 670 (829)
Q Consensus 597 ~~--~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~----~~~~~~~s~~~~~~~~~l~~~~~~g~i~~ 670 (829)
.. .........+.+++..+++++.++.+..|+.+. ....+... .......+..+.+++..+++++.++.+..
T Consensus 90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v 167 (371)
T d1k8kc_ 90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167 (371)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccccccccccccccccccccceeecccCcceeeeeec--ccccccccccccccccccccccccccccceeccccCcEEEE
Confidence 33 233344555667778999999999998888776 32222221 11222345566677889999999999999
Q ss_pred Ec-CCCCEEE------------------EeecC-CceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 671 LD-SSGSIIW------------------RCRTG-GPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 671 ~d-~~g~~~w------------------~~~~~-~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
|+ ..+.... ..... ..+... ... .+..+++++.||.|..||..+++.+..+.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 244 (371)
T d1k8kc_ 168 FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV---CFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244 (371)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE---EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred EeeccCccccccccccccccccceeeeeeccCccCcEEEE---EeecccccccccccCCcceEEeeecccceeeeecccc
Confidence 98 4332211 11110 011111 111 245688889999999999999998877665433
Q ss_pred -cccccccccccccccccccCCCcEEEEEccCCcEEEEEeec
Q 003331 730 -ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNL 770 (829)
Q Consensus 730 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~ 770 (829)
+.+..+.. ++.+++++.|+.+.+|+.+.
T Consensus 245 ~v~s~~fs~-------------d~~~la~g~d~~~~~~~~~~ 273 (371)
T d1k8kc_ 245 PLLAVTFIT-------------ESSLVAAGHDCFPVLFTYDS 273 (371)
T ss_dssp CEEEEEEEE-------------TTEEEEEETTSSCEEEEEET
T ss_pred cceeeeecC-------------CCCEEEEEcCCceEEEEeeC
Confidence 32222221 33444455577666655443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.32 E-value=7.2e-10 Score=118.23 Aligned_cols=322 Identities=12% Similarity=0.042 Sum_probs=179.7
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEE--ecCC---eeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTF--QTCG---EVKCQ 563 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~--~~~~---~~~~~ 563 (829)
+...+.+|.|..||..|++++.+++.+..+ ....+++||+++|+++.|+.+..||..+++..... .... ....+
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~-~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp EEEETTTTEEEEEETTTCSEEEEEECCSSE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCe-eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence 344667899999999999999999887664 46789999999999999999999999999865443 3222 22334
Q ss_pred eeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE-EEEecCCeEEEEEccCCCceEEEeec
Q 003331 564 PVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL-YVASTSGRLTAISVKALPFHTLWLHE 641 (829)
Q Consensus 564 ~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l-~v~t~~g~l~~~~~~~~~g~~~w~~~ 641 (829)
+.+.+++..+++++ .++.+..||.++++++..............+..++... .+.+.++....+.... ++...+...
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-~~~i~~~~~ 192 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLLVNY 192 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEEC
T ss_pred eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-CCeEEEEEe
Confidence 55556777777764 67889999999999887765543322222222222222 2333344333333221 122211111
Q ss_pred -----------cCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecCCceeecCcc--cccCCCeEEEEe-
Q 003331 642 -----------LEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGPCT--SFALPSQVLICS- 705 (829)
Q Consensus 642 -----------~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~~~~~~~~~~--~~~~~~~i~~~t- 705 (829)
..........+.+++.+++++..+ ..+..++ .+++.+-....+......... .....+.++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 111222345666677888887654 4566777 788776555443321111110 111123344333
Q ss_pred -eCCeEEEEeCCCC-------cEEEEEecCCccccccccccccccccccccCCCcEEEEE-------ccCCcEEEEEeec
Q 003331 706 -RNGSIYSFEQESG-------NLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-------TSSGSIHILRVNL 770 (829)
Q Consensus 706 -~~g~l~~~d~~tG-------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~G~l~~~d~~~ 770 (829)
.++.+..++.... +....+..+........ ..+++.++++. ..++.|.+||.++
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~-----------~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK-----------THPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE-----------CCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEE-----------cCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 3567777765443 44444443322111111 12337777753 3467899999887
Q ss_pred CccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-----eCCeEEEEeccccccc
Q 003331 771 DVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-----RDDYIYCIALETQHLE 827 (829)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~-----~~g~l~~~d~~tg~~~ 827 (829)
+.......... + +...........++.+ ++.++|+.+ .+|.|..||.+|+++.
T Consensus 342 ~~~~~~~~~~~---~-~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~ 401 (426)
T d1hzua2 342 LDAKYQVLPIA---E-WADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 401 (426)
T ss_dssp TTSCCEEECHH---H-HHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred CCcCeEEeccc---h-hcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence 63221110000 0 0000001111222222 455788764 4678999999998753
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.31 E-value=3.7e-10 Score=113.98 Aligned_cols=263 Identities=6% Similarity=0.004 Sum_probs=160.9
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEEE-cCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE----EEEecC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEIK-LEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY----WTFQTC 557 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~----w~~~~~ 557 (829)
+.++..|+.|+.||.|..||..+|+....+. .+.....+..+.+++ .+++++.|+.+..|+....... ......
T Consensus 21 s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~ 99 (299)
T d1nr0a2 21 SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS 99 (299)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEeccCCcccccccccccccc
Confidence 3456789999999999999999999875543 233344556676665 5677778999999996543321 111112
Q ss_pred CeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 558 GEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
..+. ...+.+++..+ +++.++.+..|+... .. ..... .......+.+++..+++++.+|.+..||+++ ++..
T Consensus 100 ~~~~-~~~~s~~g~~~-~~~~~~~i~~~~~~~--~~-~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~--~~~~ 171 (299)
T d1nr0a2 100 SQPL-GLAVSADGDIA-VAACYKHIAIYSHGK--LT-EVPIS-YNSSCVALSNDKQFVAVGGQDSKVHVYKLSG--ASVS 171 (299)
T ss_dssp SCEE-EEEECTTSSCE-EEEESSEEEEEETTE--EE-EEECS-SCEEEEEECTTSCEEEEEETTSEEEEEEEET--TEEE
T ss_pred cccc-ccccccccccc-ccccccccccccccc--cc-ccccc-ccccccccccccccccccccccccccccccc--cccc
Confidence 2222 23344444444 444566888888432 22 22111 1223344566678899999999999999987 5433
Q ss_pred Eee-ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec----CCceeecCcccccCCCeEEEEeeCCeEE
Q 003331 638 WLH-ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT----GGPIFAGPCTSFALPSQVLICSRNGSIY 711 (829)
Q Consensus 638 w~~-~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~----~~~~~~~~~~~~~~~~~i~~~t~~g~l~ 711 (829)
... ........+..+.+++..+++++.++.+..|| .++........ ..++....+ ...+..++.|+.||.|+
T Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 172 EVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW--SPDNVRLATGSLDNSVI 249 (299)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEE--CTTSSEEEEEETTSCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccceEEEcCCCEEE
Confidence 221 12223335566677788999999999999999 77665433221 112222111 11244688889999999
Q ss_pred EEeCCCCcEEEEEecCC---ccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 712 SFEQESGNLLWEYSVGD---PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 712 ~~d~~tG~~~w~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
.||..+++......... ......+. ..++.+++++.||.|.+||.
T Consensus 250 iwd~~~~~~~~~~~~~~~~~~~v~~~~~------------~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIW------------LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEE------------EETTEEEEEETTSCEEEEEC
T ss_pred EEECCCCCcceEEEecCCCCCcEEEEEE------------CCCCEEEEEeCCCEEEEEec
Confidence 99998876543222211 11111111 12678999999999999986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=6.9e-11 Score=122.81 Aligned_cols=183 Identities=8% Similarity=-0.034 Sum_probs=127.3
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC--EEEEEEcCCCcEEEEEecCCeeeee
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG--KIYFLDYLTGDIYWTFQTCGEVKCQ 563 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg--~l~~~d~~tG~~~w~~~~~~~~~~~ 563 (829)
+..+.. +..|.|+.||..+|+.+. .. +.....++.+++|++.|++++.+. .|+.||.++|+..-....... ...
T Consensus 15 G~~~a~-~~~g~v~v~d~~~~~~~~-~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~-v~~ 90 (360)
T d1k32a3 15 GDLIAF-VSRGQAFIQDVSGTYVLK-VP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-VFA 90 (360)
T ss_dssp GGCEEE-EETTEEEEECTTSSBEEE-CS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-EEE
T ss_pred CCEEEE-EECCeEEEEECCCCcEEE-cc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce-EEe
Confidence 333433 345789999999888764 22 333345788999998888776654 689999999887643333333 344
Q ss_pred eeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe----------cCCeEEEEEccCCC
Q 003331 564 PVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS----------TSGRLTAISVKALP 633 (829)
Q Consensus 564 ~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t----------~~g~l~~~~~~~~~ 633 (829)
..+.+++..+++++.++.++.|+..+++..............+.+.+++..++++. .++.++.|+..+
T Consensus 91 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-- 168 (360)
T d1k32a3 91 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-- 168 (360)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--
T ss_pred eeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc--
Confidence 56777888999999999999999999988777666655666677777677776543 223577888886
Q ss_pred ceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCC
Q 003331 634 FHTLWLHELEVPAFASLCITSANRHVICCLVDGHVVALD-SSG 675 (829)
Q Consensus 634 g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g 675 (829)
++......... ......+.+++..+++++.++.+..++ ...
T Consensus 169 ~~~~~~~~~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 169 RKIFAATTENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp TEEEECSCSSS-BEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred Cceeeeccccc-ccccccccCCCCEEEEEeCCCceEccccccc
Confidence 65554433322 234566777888999998888888787 443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=1.1e-10 Score=119.91 Aligned_cols=267 Identities=9% Similarity=0.067 Sum_probs=169.9
Q ss_pred cEEEEEEeCCEEEEEEcCCCcEEEEEecCC--eeeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCc----
Q 003331 529 SQVVVGCYKGKIYFLDYLTGDIYWTFQTCG--EVKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGS---- 601 (829)
Q Consensus 529 ~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~---- 601 (829)
.++++++.|+.|+.||.++++++.++..+. .......+++++..+|+ ++.++.|+.||..+|+.+++......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 468899999999999999999999887643 22345567777778775 56789999999999999998766432
Q ss_pred -ccccceeecCCCEEEEEec------------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCCeE
Q 003331 602 -IFGSPAIDEVHDVLYVAST------------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDGHV 668 (829)
Q Consensus 602 -~~~~~~~~~~~~~l~v~t~------------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g~i 668 (829)
......+.++++.+|++.. ++.+..+|..+ ++.++....... .....+.+++..+++++ +..
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~--~~~ 156 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQ-ITMLAWARDGSKLYGLG--RDL 156 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSS-CCCEEECTTSSCEEEES--SSE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC--CeEEEeccccCC-ceEEEEcCCCCEEEEEc--CCc
Confidence 2334556677788887653 45677888887 887777665433 23556777788888875 457
Q ss_pred EEEc-CCCCEEEEeecCCcee---ecC----cc-cccCCCeEEE--------------EeeCCeEEEEeCCCCcEEEEEe
Q 003331 669 VALD-SSGSIIWRCRTGGPIF---AGP----CT-SFALPSQVLI--------------CSRNGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~~~~---~~~----~~-~~~~~~~i~~--------------~t~~g~l~~~d~~tG~~~w~~~ 725 (829)
..+| .+++..+......... ..+ .. .....+.... ++.++.+..++..+|+......
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
T d1pbyb_ 157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence 7889 8888887765432110 000 00 0001111111 1223468888888887654322
Q ss_pred cCCc-cccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--
Q 003331 726 VGDP-ITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM-- 802 (829)
Q Consensus 726 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 802 (829)
.+.. ....... ...+..++.. ++.|.+||..++ +........+... +..+
T Consensus 237 ~~~~~~~~~~~~-----------~~~~~~~~~~--~~~i~v~d~~~~-------------~~~~~~~~~~~~~-~~~~s~ 289 (337)
T d1pbyb_ 237 RIMDVFYFSTAV-----------NPAKTRAFGA--YNVLESFDLEKN-------------ASIKRVPLPHSYY-SVNVST 289 (337)
T ss_dssp EECSSCEEEEEE-----------CTTSSEEEEE--ESEEEEEETTTT-------------EEEEEEECSSCCC-EEEECT
T ss_pred cCCCcceEEEEe-----------cccceEEEEc--cccEEEEECCCC-------------cEEEEEcCCCCEE-EEEECC
Confidence 2111 1111111 1225555554 478999998865 3444444444332 2222
Q ss_pred ECCEEEEeeeCCeEEEEeccccccc
Q 003331 803 IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 803 ~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
++..||+++.+|.|..||.++++..
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEE
Confidence 4668999999999999999988754
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.30 E-value=1.4e-09 Score=109.45 Aligned_cols=265 Identities=12% Similarity=0.142 Sum_probs=171.4
Q ss_pred EEEEE-EeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCcccccce
Q 003331 530 QVVVG-CYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSIFGSPA 607 (829)
Q Consensus 530 ~v~vg-~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~ 607 (829)
++||. +.+++|..||++|++++.++..+..+. ...+++++..+|+ ++.++.|..||..+++.+..+..+... ....
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~-~~~~ 80 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSP-QGVA 80 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSE-EEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccc-cccc
Confidence 56765 467899999999999999988776543 3456777777875 456789999999999999887665443 2344
Q ss_pred eecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEEEeecC
Q 003331 608 IDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALD-SSGSIIWRCRTG 684 (829)
Q Consensus 608 ~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w~~~~~ 684 (829)
+..++..+++.. .++.+..++..+ ++........... ....+.+++..+++... ++.+..++ .+++........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (301)
T d1l0qa2 81 VSPDGKQVYVTNMASSTLSVIDTTS--NTVAGTVKTGKSP-LGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG 157 (301)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTT--TEEEEEEECSSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred cccccccccccccccceeeeccccc--ceeeeeccccccc-eEEEeecCCCeeeeeeccccceeeeeccccceeeecccC
Confidence 555567777655 456788888887 7777766554332 44556667777766554 56677888 777777666544
Q ss_pred CceeecCcccccCCCeEEEEeeC-CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEcc---C
Q 003331 685 GPIFAGPCTSFALPSQVLICSRN-GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTS---S 760 (829)
Q Consensus 685 ~~~~~~~~~~~~~~~~i~~~t~~-g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 760 (829)
........ ...+..+|+++.+ +.+..++....+...............+. ..+..++++.. +
T Consensus 158 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 158 RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN------------PEGTKAYVTNVDKYF 223 (301)
T ss_dssp SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEEC------------TTSSEEEEEEECSSC
T ss_pred CCceEEEe--eccccceeeecccccccccccccceeeeecccccCCcceeecc------------cccccccccccccee
Confidence 33222111 1124567777654 56677777777776666655443322222 22666666543 3
Q ss_pred CcEEEEEeecCccccccccccccceeeeeeccCCcccccceE--ECCEEEEee-eCCeEEEEeccccccc
Q 003331 761 GSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPVM--IGGRVFVGC-RDDYIYCIALETQHLE 827 (829)
Q Consensus 761 G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~l~vg~-~~g~l~~~d~~tg~~~ 827 (829)
+.|++||..++ +....+...... ....+ ++.+||+.+ .+|.|..||.+++++.
T Consensus 224 ~~v~v~D~~t~-------------~~~~~~~~~~~~-~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 224 NTVSMIDTGTN-------------KITARIPVGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279 (301)
T ss_dssp CEEEEEETTTT-------------EEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eeeeeeecCCC-------------eEEEEEcCCCCE-EEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 57999998765 333333333222 22222 345788765 5789999999999864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=2.2e-09 Score=109.69 Aligned_cols=271 Identities=8% Similarity=0.054 Sum_probs=168.0
Q ss_pred CCeEEEEecCCC-cEEEEECCCCc--EEEEEEcC-CceeeceEEee--CCcEEEEEEeCCEEEEEEcCCCcEEEE-----
Q 003331 485 SDIYLFVGSHSH-KFICADAKRSS--VLWEIKLE-GRIECSAAVLA--DFSQVVVGCYKGKIYFLDYLTGDIYWT----- 553 (829)
Q Consensus 485 ~~~~l~igs~~g-~l~~~d~~tg~--~~w~~~~~-~~~~~~~~~~~--~~~~v~vg~~dg~l~~~d~~tG~~~w~----- 553 (829)
.+..+.+++.+. .++.+|..+.+ ....+..+ .....+..+++ ++..|+.|+.||.|..||..+++....
T Consensus 28 ~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~ 107 (325)
T d1pgua1 28 TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107 (325)
T ss_dssp TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEE
T ss_pred CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccc
Confidence 344555554433 34556644432 23344433 23445666764 456788899999999999876553221
Q ss_pred ---EecCCeeeeeeeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCC-EEEEEecCCeEEEE
Q 003331 554 ---FQTCGEVKCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHD-VLYVASTSGRLTAI 627 (829)
Q Consensus 554 ---~~~~~~~~~~~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~-~l~v~t~~g~l~~~ 627 (829)
+...........+..++..+.+++ .++.+..++..+|+.+..+..+.....+..+.+++. .++.++.+|.+..|
T Consensus 108 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~ 187 (325)
T d1pgua1 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187 (325)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred ccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccc
Confidence 122222233344555666666654 356789999999999988876555445555655444 46668889999999
Q ss_pred EccCCCceEEEeeccC---Ccceeeeeeeec-CCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcc--cccCCCe
Q 003331 628 SVKALPFHTLWLHELE---VPAFASLCITSA-NRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCT--SFALPSQ 700 (829)
Q Consensus 628 ~~~~~~g~~~w~~~~~---~~~~~s~~~~~~-~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~--~~~~~~~ 700 (829)
+..+ ++........ .....+..+.++ +..++.++.++.|.+|| .+++.+..+............ ....+..
T Consensus 188 d~~~--~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~ 265 (325)
T d1pgua1 188 QGPP--FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK 265 (325)
T ss_dssp ETTT--BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE
T ss_pred cccc--cccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCE
Confidence 9876 5544443322 222344556655 45677788899999999 899887766543321111111 1112457
Q ss_pred EEEEeeCCeEEEEeCCCCcEEEEEecCCccccc---cccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 701 VLICSRNGSIYSFEQESGNLLWEYSVGDPITAS---AYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 701 i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+..++.|+.|..||..+++.+..+......... .+.. ..++.++.++.||.|++||.
T Consensus 266 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-----------TGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-----------EETTEEEEEETTSCEEEEET
T ss_pred EEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEE-----------CCCCEEEEEECCCEEEEEEC
Confidence 888899999999999999988776644332111 1111 11568889999999999973
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.6e-09 Score=110.67 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=153.1
Q ss_pred CCeEEEEecCCCcEEEEECCCCcEEEE--------EEcCCceeeceEEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEE
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSVLWE--------IKLEGRIECSAAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~~w~--------~~~~~~~~~~~~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~ 554 (829)
++..|..|+.||.|..||..+++.... +........+..++.++..+.+++. ++.+..|+..+|+.+..+
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 155 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee
Confidence 345777899999999999876543222 2222233345667778788777654 567889999999999887
Q ss_pred ecCCeeeeeeeeecCCC-EEEEeccCCeEEEEEcCCCeEEEeeccC---CcccccceeecC-CCEEEEEecCCeEEEEEc
Q 003331 555 QTCGEVKCQPVVDAPRQ-LIWCGSHDHNLYALDFRNYRCVYKLPCG---GSIFGSPAIDEV-HDVLYVASTSGRLTAISV 629 (829)
Q Consensus 555 ~~~~~~~~~~~~~~~~~-~i~~gs~~g~l~~~d~~tg~~~w~~~~~---~~~~~~~~~~~~-~~~l~v~t~~g~l~~~~~ 629 (829)
..+........+.+.+. .+.+++.|+.++.||..+++........ .....+..+.++ +..++.++.+|.|..||.
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~ 235 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence 66554444445555444 4667888999999999888776655432 222334455543 456777889999999998
Q ss_pred cCCCceEEEeeccCCcceeeeee---eecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecC--cccccCCCeEEE
Q 003331 630 KALPFHTLWLHELEVPAFASLCI---TSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGP--CTSFALPSQVLI 703 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~~~s~~~---~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~--~~~~~~~~~i~~ 703 (829)
++ ++.+..+..+........+ ..++..++.++.|+.|.+|| .+++.+..+.......... .+....++.|+.
T Consensus 236 ~~--~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 236 KS--GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TT--CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred cc--ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 87 7777666543332222222 24577899999999999999 8898876665443321111 111223567888
Q ss_pred EeeCCeEEEEeC
Q 003331 704 CSRNGSIYSFEQ 715 (829)
Q Consensus 704 ~t~~g~l~~~d~ 715 (829)
++.||.|+.||.
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999984
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.19 E-value=1e-09 Score=112.95 Aligned_cols=275 Identities=10% Similarity=0.050 Sum_probs=162.6
Q ss_pred eEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccC
Q 003331 522 AAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
++++.+++++++++.++.|..||+++++++.++..+. .......+.+++..+|++ +.++.|+.||..+++.+......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 3466778899999999999999999999999887643 223345667777788765 56789999999999999887654
Q ss_pred Cc------ccccceeecCCCEEEEEec------------CCeEEEEEccCCCceEEEeeccC-CcceeeeeeeecCCEEE
Q 003331 600 GS------IFGSPAIDEVHDVLYVAST------------SGRLTAISVKALPFHTLWLHELE-VPAFASLCITSANRHVI 660 (829)
Q Consensus 600 ~~------~~~~~~~~~~~~~l~v~t~------------~g~l~~~~~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~ 660 (829)
.. ......+++++..+|++.. ++.+..++..+ ++........ .+..........++.++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc--ceeeeEEEeeeccCceEEEEecCCCEEE
Confidence 32 1234556777788888753 34556666554 3322111110 01111122233556666
Q ss_pred EEeeCCeEEEEc-CCCCEEEEeecCCceee---cCc-----ccccCCCeEE----------------EEeeCCeEEEEeC
Q 003331 661 CCLVDGHVVALD-SSGSIIWRCRTGGPIFA---GPC-----TSFALPSQVL----------------ICSRNGSIYSFEQ 715 (829)
Q Consensus 661 ~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~---~~~-----~~~~~~~~i~----------------~~t~~g~l~~~d~ 715 (829)
+. ++.+..++ .+++.+.....+..... .+. .....++.+. ....++.+..+|.
T Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 160 VA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp EE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred Ee--CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 54 35678888 78888776654332111 110 0001111111 1123446777888
Q ss_pred CCCcEEEEEecCC--ccccccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccC
Q 003331 716 ESGNLLWEYSVGD--PITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQ 793 (829)
Q Consensus 716 ~tG~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (829)
.++........+. .+..... ...+..++... .+.|.+||..++ +........
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~v~v~d~~~~-------------~~~~~~~~~ 291 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLR------------SPKDPNQIYGV-LNRLAKYDLKQR-------------KLIKAANLD 291 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEE------------CSSCTTEEEEE-ESEEEEEETTTT-------------EEEEEEECS
T ss_pred CCCceEEEEeecccceeEEEEE------------eCCCCEEEEec-CCeEEEEECCCC-------------cEEEEEcCC
Confidence 8877655433221 1111111 11245555544 457999998765 334444433
Q ss_pred CcccccceE--ECCEEEEeeeCCeEEEEeccccccc
Q 003331 794 GDIFSSPVM--IGGRVFVGCRDDYIYCIALETQHLE 827 (829)
Q Consensus 794 ~~~~~s~~~--~~~~l~vg~~~g~l~~~d~~tg~~~ 827 (829)
..+. ...+ ++.+||+++.+|.|..||.++++..
T Consensus 292 ~~~~-~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 292 HTYY-CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326 (346)
T ss_dssp SCCC-EEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred CCEE-EEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence 3222 2222 5679999999999999999998754
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.11 E-value=9.3e-08 Score=99.24 Aligned_cols=267 Identities=9% Similarity=-0.029 Sum_probs=154.6
Q ss_pred CCeEEEEec-----CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCc
Q 003331 485 SDIYLFVGS-----HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs-----~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~ 549 (829)
++.++|+.. ..+.++.+|..+|+.+.++..+... .+.+++||.++++.+. ++.|..||..+++
T Consensus 31 dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~ 108 (373)
T d2madh_ 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCc
Confidence 566777753 2356999999999999987755433 6789999999998754 4679999999999
Q ss_pred EEEEEecCCeeee-------eeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEE-EEe
Q 003331 550 IYWTFQTCGEVKC-------QPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLY-VAS 619 (829)
Q Consensus 550 ~~w~~~~~~~~~~-------~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~-v~t 619 (829)
+++....+..... ...+..+++.+++... ++.+..++..+++........ ....+..++..+| ...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~g~~~~v~~~ 184 (373)
T d2madh_ 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----TCYHIHPGAPSTFYLLC 184 (373)
T ss_pred EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc----eeEEEecCCCcEEEEEc
Confidence 9988765543221 1233334444444332 345666666665554433222 1233444445554 566
Q ss_pred cCCeEEEEEccCCCceEEEeeccCC-----cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeec----CCc--e
Q 003331 620 TSGRLTAISVKALPFHTLWLHELEV-----PAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRT----GGP--I 687 (829)
Q Consensus 620 ~~g~l~~~~~~~~~g~~~w~~~~~~-----~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~----~~~--~ 687 (829)
.+|.+..++..+ ++..+...... ...........++.++..+.++.++.++ .++........ ... .
T Consensus 185 ~dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
T d2madh_ 185 AQGGLAKTDHAG--GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred CCCeEEEEEcCC--ceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEee
Confidence 789999999887 66666543211 1111111122334444555677788877 44433211110 000 0
Q ss_pred eecC------c---------ccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc
Q 003331 688 FAGP------C---------TSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR 752 (829)
Q Consensus 688 ~~~~------~---------~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (829)
...+ . .....+..+.....++.+..||..+++.++.+..+.......+.. ++.
T Consensus 263 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~sp------------DG~ 330 (373)
T d2madh_ 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQ------------DGG 330 (373)
T ss_pred eeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECC------------CCC
Confidence 0000 0 001111223334456789999999999999887766544332222 244
Q ss_pred E-EE-EEccCCcEEEEEeecC
Q 003331 753 L-VC-ICTSSGSIHILRVNLD 771 (829)
Q Consensus 753 ~-l~-~~~~~G~l~~~d~~~~ 771 (829)
. +| .+..++.|++||..++
T Consensus 331 ~~l~vt~~~d~~v~v~D~~tg 351 (373)
T d2madh_ 331 PDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEEEEeCCCCeEEEEECCCC
Confidence 3 33 5678899999999977
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.09 E-value=4.6e-08 Score=100.79 Aligned_cols=269 Identities=11% Similarity=0.065 Sum_probs=158.9
Q ss_pred CCeEEEEec-----CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE----------eCCEEEEEEcCCCc
Q 003331 485 SDIYLFVGS-----HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC----------YKGKIYFLDYLTGD 549 (829)
Q Consensus 485 ~~~~l~igs-----~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~----------~dg~l~~~d~~tG~ 549 (829)
++.++|+.. ....++.||..+|+++++.+.+... .+.+++|++.+|+.+ .++.|..||..+++
T Consensus 12 dg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 12 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 567788753 3457999999999999988766443 578899999898754 36789999999999
Q ss_pred EEEEEecCCee-------eeeeeeecCCCEEEEec--cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003331 550 IYWTFQTCGEV-------KCQPVVDAPRQLIWCGS--HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 550 ~~w~~~~~~~~-------~~~~~~~~~~~~i~~gs--~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
.+.....+... .....+.++++.+++.+ .+..++.+|..+++.+..+.........+ ......+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 166 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP---TAPDTFFMHCR 166 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEE---EETTEEEEEET
T ss_pred EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEee---cCCcceEEEcC
Confidence 99877543211 12234666778888764 34678899999999887776544322111 11223333334
Q ss_pred CCeEEEEEccCCCceEEEee-cc----CCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE-EEeecCCc-------
Q 003331 621 SGRLTAISVKALPFHTLWLH-EL----EVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII-WRCRTGGP------- 686 (829)
Q Consensus 621 ~g~l~~~~~~~~~g~~~w~~-~~----~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~-w~~~~~~~------- 686 (829)
+|....+..... +...+.. .. .............++.++..+.++.+++++ ..++.. +.......
T Consensus 167 dg~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (355)
T d2bbkh_ 167 DGSLAKVAFGTE-GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245 (355)
T ss_dssp TSCEEEEECCSS-SCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEEecCC-CeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeee
Confidence 444444433221 2222111 11 111123344555677888888889999999 655432 11111000
Q ss_pred ee--ecCcccc-cCCCeEEEEeeC----------CeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-
Q 003331 687 IF--AGPCTSF-ALPSQVLICSRN----------GSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR- 752 (829)
Q Consensus 687 ~~--~~~~~~~-~~~~~i~~~t~~----------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 752 (829)
.. ....+.. .....+|+...+ ..|..||..+++.+.+...+.......+. +++.
T Consensus 246 ~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~s------------pDG~~ 313 (355)
T d2bbkh_ 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVS------------QDEKP 313 (355)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEEC------------CSSSC
T ss_pred eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEc------------CCCCe
Confidence 00 0000111 123456665443 36999999999998877654443322221 1243
Q ss_pred EEE-EEccCCcEEEEEeecC
Q 003331 753 LVC-ICTSSGSIHILRVNLD 771 (829)
Q Consensus 753 ~l~-~~~~~G~l~~~d~~~~ 771 (829)
+++ .+..++.|++||.+++
T Consensus 314 ~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 314 LLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp EEEEEETTTTEEEEEETTTC
T ss_pred EEEEEECCCCEEEEEECCCC
Confidence 344 4566899999999877
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=7.3e-09 Score=105.61 Aligned_cols=286 Identities=9% Similarity=0.011 Sum_probs=161.5
Q ss_pred CCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE----EEEecCCeeeeeeeeec-CCCEEEEeccCCeEEEEEcCC
Q 003331 515 EGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY----WTFQTCGEVKCQPVVDA-PRQLIWCGSHDHNLYALDFRN 589 (829)
Q Consensus 515 ~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~----w~~~~~~~~~~~~~~~~-~~~~i~~gs~~g~l~~~d~~t 589 (829)
+...+.+..+++++..|++|+.|+.|..||..++... ..+.....+.+ ..+.+ ++..|++|+.|+.+..|+..+
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~-v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC-CNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEE-EEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEE-EEEeCCCCCEEEEcccccceeeeeccc
Confidence 3334567888889999999999999999998765432 22233444444 34443 345788899999999999988
Q ss_pred CeEEEeeccCCcc-cccceeecCCCEEEEEecCCeEEEEEccCCCceEEEee--ccC--C--cceeeeeeeecCCEEEEE
Q 003331 590 YRCVYKLPCGGSI-FGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLH--ELE--V--PAFASLCITSANRHVICC 662 (829)
Q Consensus 590 g~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~--~~~--~--~~~~s~~~~~~~~~l~~~ 662 (829)
+............ ........+...++.++.++.+..||..+ +...... ... . .......+......++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN--YGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH--HTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeeccc--cccceeeecccccccccceeeeeeeeccCCceeee
Confidence 7766655443322 22223334457788888899999998764 2211111 111 1 111223445567788999
Q ss_pred eeCCeEEEEc-CCCCEEEE----eecCCceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEE------EEecCCccc
Q 003331 663 LVDGHVVALD-SSGSIIWR----CRTGGPIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLW------EYSVGDPIT 731 (829)
Q Consensus 663 ~~~g~i~~~d-~~g~~~w~----~~~~~~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w------~~~~~~~~~ 731 (829)
+.++.+..++ .+++.... ........... ........+..++.+|.+..++.......+ .........
T Consensus 167 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T d1yfqa_ 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred cCCCcEEEEecccCcccceeeeecccccceeeeE-eecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeecc
Confidence 9999999999 55443221 11111111111 111224467788889998888865543221 111110000
Q ss_pred cccccccccccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeec-cCCcccccceEECCEEEEe
Q 003331 732 ASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLE-LQGDIFSSPVMIGGRVFVG 810 (829)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~l~vg 810 (829)
... .....+..-...+.++++++|+.||.|++||.+++ +.+..+. .......+....++.+.++
T Consensus 246 ~~~--~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~-------------~~l~~~~~~~~~~~~~~s~~~~~l~~a 310 (342)
T d1yfqa_ 246 KDT--NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR-------------KKIKNFAKFNEDSVVKIACSDNILCLA 310 (342)
T ss_dssp TCC--SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT-------------EEEEECCCCSSSEEEEEEECSSEEEEE
T ss_pred CCC--cccccceeEEecCCccEEEEECCCCEEEEEECCCC-------------cEEEEecCCCCCEEEEEEeCCCEEEEE
Confidence 000 00000001112345789999999999999998865 2232222 1122222222356778888
Q ss_pred eeCCeEEEE
Q 003331 811 CRDDYIYCI 819 (829)
Q Consensus 811 ~~~g~l~~~ 819 (829)
+.++.+..+
T Consensus 311 ~sdd~~~~~ 319 (342)
T d1yfqa_ 311 TSDDTFKTN 319 (342)
T ss_dssp EECTHHHHC
T ss_pred EcCCcEEEe
Confidence 877654333
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.05 E-value=2.2e-08 Score=106.36 Aligned_cols=227 Identities=10% Similarity=0.023 Sum_probs=147.2
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE--EEEecCC---eeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY--WTFQTCG---EVKCQ 563 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~--w~~~~~~---~~~~~ 563 (829)
+.+.+.+|.|..||..|++++-+++.+..+ ....+++||+++|+++.|+.+..||..+++.. -+..... .+..+
T Consensus 35 ~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~-~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 35 SVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEeCCCCe-eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 456678899999999999999998877653 47789999999999999999999999888743 3333332 23344
Q ss_pred eeeecCCCEEEE-eccCCeEEEEEcCCCeEEEeeccCCcc-----------cccceeecCCCEEEEE-ecCCeEEEEEcc
Q 003331 564 PVVDAPRQLIWC-GSHDHNLYALDFRNYRCVYKLPCGGSI-----------FGSPAIDEVHDVLYVA-STSGRLTAISVK 630 (829)
Q Consensus 564 ~~~~~~~~~i~~-gs~~g~l~~~d~~tg~~~w~~~~~~~~-----------~~~~~~~~~~~~l~v~-t~~g~l~~~~~~ 630 (829)
+.+++++..+|+ +..++.+..||.++++++..+...... ......+.++..++++ ..++.+..++..
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence 455666777765 566899999999999988766543211 1112334444555443 446788889887
Q ss_pred CCCceEEEeeccCCcceeeeeeeecCCEEEEEeeC-CeEEEEc-CCCCEEEEeecCCceeecCcc---cccCCCeEEEEe
Q 003331 631 ALPFHTLWLHELEVPAFASLCITSANRHVICCLVD-GHVVALD-SSGSIIWRCRTGGPIFAGPCT---SFALPSQVLICS 705 (829)
Q Consensus 631 ~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~-g~i~~~d-~~g~~~w~~~~~~~~~~~~~~---~~~~~~~i~~~t 705 (829)
+.....++...... ......+.+++.++++++.+ +.+..+| .+++..+....+......... .....+.++...
T Consensus 194 ~~~~~~~~~i~~g~-~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 272 (432)
T d1qksa2 194 DLNNLKTTEISAER-FLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 272 (432)
T ss_dssp CSSEEEEEEEECCS-SEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CCCcceEEEEcccC-ccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceeccc
Confidence 62233456655433 23456778888888888764 4567777 788888777655432111110 111223344443
Q ss_pred e--CCeEEEEeCCC
Q 003331 706 R--NGSIYSFEQES 717 (829)
Q Consensus 706 ~--~g~l~~~d~~t 717 (829)
. ++.+.+++..+
T Consensus 273 ~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 273 HMGDDSVALIGTDP 286 (432)
T ss_dssp BSSSSEEEEEECCT
T ss_pred ccCCceEEeccccc
Confidence 3 55677776544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=1.1e-08 Score=104.21 Aligned_cols=269 Identities=12% Similarity=0.100 Sum_probs=156.2
Q ss_pred eCCCeEEEEecCCCcEEEEECCCCcEEEEE---EcCCceeeceEEeeCC-cEEEEEEeCCEEEEEEcCCCcEEEEEecCC
Q 003331 483 KDSDIYLFVGSHSHKFICADAKRSSVLWEI---KLEGRIECSAAVLADF-SQVVVGCYKGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 483 ~d~~~~l~igs~~g~l~~~d~~tg~~~w~~---~~~~~~~~~~~~~~~~-~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
+.++..|.+|+.||.|..||..+++..... ..+.....+..+.+++ ..+++|+.|+.+..|+..++..........
T Consensus 20 sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~ 99 (342)
T d1yfqa_ 20 IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99 (342)
T ss_dssp EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCC
T ss_pred eCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccc
Confidence 335678999999999999998765432221 1233334466676654 478889999999999998887776554433
Q ss_pred e-eeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEE----EeeccCC--cccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 559 E-VKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCV----YKLPCGG--SIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 559 ~-~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~----w~~~~~~--~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
. .............++.++.++.+..||..++... ....... .......+......++.++.++.+..|+..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~ 179 (342)
T d1yfqa_ 100 ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred cccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEeccc
Confidence 2 2222333445678888899999999997654322 1111111 1111223344567889999999999999876
Q ss_pred CCceEEEee--ccCCcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE------EEeecC-------CceeecCcccc
Q 003331 632 LPFHTLWLH--ELEVPAFASLCITSANRHVICCLVDGHVVALD-SSGSII------WRCRTG-------GPIFAGPCTSF 695 (829)
Q Consensus 632 ~~g~~~w~~--~~~~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~------w~~~~~-------~~~~~~~~~~~ 695 (829)
......... ..............++..+.+++.+|.+..++ ...... +..... .......++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 259 (342)
T d1yfqa_ 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259 (342)
T ss_dssp CTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEE
T ss_pred CcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEe
Confidence 222111111 11111111112223456788888899888876 322211 111100 00111111112
Q ss_pred c-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCcEEEEEccCCcE
Q 003331 696 A-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSI 763 (829)
Q Consensus 696 ~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l 763 (829)
. .+..++.|+.||.|+.||.++++.+.++..........+ ..+++.+++++.++.+
T Consensus 260 sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~------------s~~~~~l~~a~sdd~~ 316 (342)
T d1yfqa_ 260 SPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI------------ACSDNILCLATSDDTF 316 (342)
T ss_dssp CTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE------------EECSSEEEEEEECTHH
T ss_pred cCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEE------------EeCCCEEEEEEcCCcE
Confidence 2 245688899999999999999998876654333222111 1236777777776644
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=7.3e-09 Score=103.45 Aligned_cols=275 Identities=13% Similarity=0.063 Sum_probs=155.6
Q ss_pred cEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEE
Q 003331 507 SVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALD 586 (829)
Q Consensus 507 ~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d 586 (829)
+++..+..+.....+..++ .|++|+.||.|..||..++.. .....+.+ ..+. .++.++.++.|+.+..|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s----~l~sgs~Dg~v~~Wd~~~~~~----~h~~~V~~-~~~~-~~~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSSMHQ----DHSNLIVS-LDNS-KAQEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETT----TTEEEETTSCEEETTTTEEEC----CCCSCEEE-EECC-STTCCEEEETTTEEEETT
T ss_pred ceeEEECCCCCceEEEEEC----cEEEEeCCCeEEEEECCCCCC----CCCCCEEE-EEec-CCCeEEEEeecccccccc
Confidence 4444455554433334432 289999999999999877642 11223322 2233 356678888999998887
Q ss_pred cCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEeeCC
Q 003331 587 FRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCLVDG 666 (829)
Q Consensus 587 ~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~g 666 (829)
..+.+ ....+. ..... .++.+++...++.+..++..+ ++.........+ ...+..++..+++++.++
T Consensus 74 ~~~~~------~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~ 140 (287)
T d1pgua2 74 ITKHE------FGSQPK-VASAN-NDGFTAVLTNDDDLLILQSFT--GDIIKSVRLNSP---GSAVSLSQNYVAVGLEEG 140 (287)
T ss_dssp EEEEE------CSSCEE-EEEEC-SSSEEEEEETTSEEEEEETTT--CCEEEEEECSSC---EEEEEECSSEEEEEETTT
T ss_pred ccccc------ccccee-eeeec-cCCceEEEeecccceeeeccc--eeeeeeccccce---eeeeeccCcceeeecccc
Confidence 55321 111111 11122 246666666777788888776 766665554432 234555778888888765
Q ss_pred -eEEEEc-CCCCEEEEeec--CCceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEE-ec-CCccccccccccc
Q 003331 667 -HVVALD-SSGSIIWRCRT--GGPIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEY-SV-GDPITASAYIDEH 739 (829)
Q Consensus 667 -~i~~~d-~~g~~~w~~~~--~~~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~-~~-~~~~~~~~~~~~~ 739 (829)
.+..++ .+.+....... ..++... ... .+..+++++.+|.|+.||..+++..-.. .. ...+....+....
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~ 217 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYI---SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEE---EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred ceeeeeeccccceeeeeeeccCCceeEE---EeccCccccccccccccccceeecccccccccccccccccceeeecccc
Confidence 577887 54444443332 1222221 122 2346888999999999999988765321 11 1112111111000
Q ss_pred cccccccccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccccce-EECCEEEEeeeCCeEEE
Q 003331 740 LQLKLESCLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFSSPV-MIGGRVFVGCRDDYIYC 818 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~l~vg~~~g~l~~ 818 (829)
. .......++.+++.|+.||.|++||.+++. +......-....+.... ..++.++.++.||.+..
T Consensus 218 ~--~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~------------~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~i 283 (287)
T d1pgua2 218 K--GANEEEIEEDLVATGSLDTNIFIYSVKRPM------------KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKR 283 (287)
T ss_dssp --------CCSCCEEEEEETTSCEEEEESSCTT------------CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEE
T ss_pred c--ccccccCCCCeeEeecCCCeEEEEECCCCC------------eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEE
Confidence 0 000112346788999999999999986531 22222221222223333 24678999999999999
Q ss_pred Eec
Q 003331 819 IAL 821 (829)
Q Consensus 819 ~d~ 821 (829)
||.
T Consensus 284 W~i 286 (287)
T d1pgua2 284 WNV 286 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=1.5e-08 Score=101.10 Aligned_cols=248 Identities=10% Similarity=0.044 Sum_probs=152.3
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeec
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDA 568 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 568 (829)
|+.|+.||.|..||..+++ ..+.....+..+. .+..++.++.|+.+..|+..+. .....+... .+.
T Consensus 24 l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~-~~~~~~s~s~D~~v~~w~~~~~------~~~~~~~~~-~~~- 89 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNS-KAQEYSSISWDDTLKVNGITKH------EFGSQPKVA-SAN- 89 (287)
T ss_dssp TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECC-STTCCEEEETTTEEEETTEEEE------ECSSCEEEE-EEC-
T ss_pred EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEec-CCCeEEEEeecccccccccccc------ccccceeee-eec-
Confidence 6789999999999987654 2233223334444 3457888889999988875332 122222221 222
Q ss_pred CCCEEEEeccCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCC-eEEEEEccCCCceEEEeeccC-Ccc
Q 003331 569 PRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSG-RLTAISVKALPFHTLWLHELE-VPA 646 (829)
Q Consensus 569 ~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g-~l~~~~~~~~~g~~~w~~~~~-~~~ 646 (829)
.++.+++...++.+..++..+++.+......... ..+..+++.+++++.++ .+..|+..+ .+........ ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~ 164 (287)
T d1pgua2 90 NDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG---SAVSLSQNYVAVGLEEGNTIQVFKLSD--LEVSFDLKTPLRAK 164 (287)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE---EEEEECSSEEEEEETTTSCEEEEETTE--EEEEEECSSCCSSC
T ss_pred cCCceEEEeecccceeeeccceeeeeecccccee---eeeeccCcceeeeccccceeeeeeccc--cceeeeeeeccCCc
Confidence 3456666666778999999999888776654332 12334457888888775 578888765 4444443322 222
Q ss_pred eeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEe-ec-CCceeec---Cc-----ccccCCCeEEEEeeCCeEEEEeC
Q 003331 647 FASLCITSANRHVICCLVDGHVVALD-SSGSIIWRC-RT-GGPIFAG---PC-----TSFALPSQVLICSRNGSIYSFEQ 715 (829)
Q Consensus 647 ~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~-~~-~~~~~~~---~~-----~~~~~~~~i~~~t~~g~l~~~d~ 715 (829)
..+..+.+++..+++++.+|.+..|| .+++..... .. ...+... |. .....+..+..|+.|+.|+.||.
T Consensus 165 v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~ 244 (287)
T d1pgua2 165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSV 244 (287)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEES
T ss_pred eeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEEC
Confidence 35567777888999999999999999 777654321 11 1122211 10 01122346778899999999998
Q ss_pred CCCcEEEEE-ec-CCccccccccccccccccccccCCCcEEEEEccCCcEEEEEe
Q 003331 716 ESGNLLWEY-SV-GDPITASAYIDEHLQLKLESCLSIDRLVCICTSSGSIHILRV 768 (829)
Q Consensus 716 ~tG~~~w~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~l~~~d~ 768 (829)
+++...... .. ...+....+. + ++.++.++.||.|.+|+.
T Consensus 245 ~~~~~~~~~~~~h~~~V~~v~~~-~------------~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 245 KRPMKIIKALNAHKDGVNNLLWE-T------------PSTLVSSGADACIKRWNV 286 (287)
T ss_dssp SCTTCCEEETTSSTTCEEEEEEE-E------------TTEEEEEETTSCEEEEEE
T ss_pred CCCCeEEEEeCCCCCCeEEEEEC-C------------CCEEEEEECCCeEEEEEE
Confidence 775433332 22 2223222211 1 557888889999999974
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.94 E-value=3.3e-07 Score=94.94 Aligned_cols=284 Identities=10% Similarity=-0.002 Sum_probs=154.4
Q ss_pred ceEEeeCCcEEEEEE-----eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEE
Q 003331 521 SAAVLADFSQVVVGC-----YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYAL 585 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-----~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~ 585 (829)
+..+++++..+|+.. ..+.|+.||..+|+++.++..+... .+.+++++..+++++ .++.+..|
T Consensus 25 ~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~ 102 (373)
T d2madh_ 25 DEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred ccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEE
Confidence 556778888888753 2457999999999999987655432 456778888888864 34679999
Q ss_pred EcCCCeEEEeeccCCccc-------ccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecC
Q 003331 586 DFRNYRCVYKLPCGGSIF-------GSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSAN 656 (829)
Q Consensus 586 d~~tg~~~w~~~~~~~~~-------~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~ 656 (829)
|..++++++....+.... ....+..++..+++... ++.+..++..+ ++..-.... .....+.+++
T Consensus 103 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~s~~g 176 (373)
T d2madh_ 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG--SSDDQLLSS----PTCYHIHPGA 176 (373)
T ss_pred ECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC--CeEEEEecc----ceeEEEecCC
Confidence 999999998876543211 11233344444444432 23444555443 333222211 1234455566
Q ss_pred CEEE-EEeeCCeEEEEc-CCCCEEEEeecCCc-----eeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEEEEEecCCc
Q 003331 657 RHVI-CCLVDGHVVALD-SSGSIIWRCRTGGP-----IFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 657 ~~l~-~~~~~g~i~~~d-~~g~~~w~~~~~~~-----~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
..++ ..+.++.+..++ .+++..+....... ..... .....++.+...+.++.++.++..++...-.......
T Consensus 177 ~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 255 (373)
T d2madh_ 177 PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQP-AQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeee-EEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccc
Confidence 6554 456789999999 77777765542211 11110 1122344555566778888888877654322211110
Q ss_pred c---cccccccccccccccc--------ccCCCcEEEEEccCCcEEEEEeecCccccccccccccceeeeeeccCCcccc
Q 003331 730 I---TASAYIDEHLQLKLES--------CLSIDRLVCICTSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGDIFS 798 (829)
Q Consensus 730 ~---~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (829)
. ...............+ ....+..+.....++.+.+||..++ +........... .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~-------------~~~~~~~~~~~~-~ 321 (373)
T d2madh_ 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG-------------QTSSQISLGHDV-D 321 (373)
T ss_pred cCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC-------------cEEEEecCCCCe-e
Confidence 0 0000000000000000 0111333344455666777777655 333333333322 2
Q ss_pred cceE--ECCE-EEE-eeeCCeEEEEeccccccc
Q 003331 799 SPVM--IGGR-VFV-GCRDDYIYCIALETQHLE 827 (829)
Q Consensus 799 s~~~--~~~~-l~v-g~~~g~l~~~d~~tg~~~ 827 (829)
...+ ++.. +|+ ++.++.|+.||..+|+..
T Consensus 322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~ 354 (373)
T d2madh_ 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 2222 3334 443 567889999999999864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.92 E-value=5.5e-08 Score=100.17 Aligned_cols=191 Identities=12% Similarity=0.035 Sum_probs=116.1
Q ss_pred EEeeCCcEEEEEEe-----CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec----------cCCeEEEEEc
Q 003331 523 AVLADFSQVVVGCY-----KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS----------HDHNLYALDF 587 (829)
Q Consensus 523 ~~~~~~~~v~vg~~-----dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs----------~~g~l~~~d~ 587 (829)
+.++++..+|+... ++.++.||..+|+++++...+... .+.+++++..||+.+ .++.|..||.
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~ 85 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 85 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence 34678888988743 457999999999999988765433 467788888888753 3578999999
Q ss_pred CCCeEEEeeccCCc-------ccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCE
Q 003331 588 RNYRCVYKLPCGGS-------IFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRH 658 (829)
Q Consensus 588 ~tg~~~w~~~~~~~-------~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~ 658 (829)
.+++.+........ ......+..+++.+++... +..+..++..+ ++.+.......... ........
T Consensus 86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 160 (355)
T d2bbkh_ 86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYH---IFPTAPDT 160 (355)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEE---EEEEETTE
T ss_pred CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC--CcEeeEEecCCcce---EeecCCcc
Confidence 99999887654321 1123456777788888754 45677888877 77766655433211 11112223
Q ss_pred EEEEeeCCeEEEEc--CCCCEEEEeec-CC----ceeecCcccccCCCeEEEEeeCCeEEEEeCCCCcEE
Q 003331 659 VICCLVDGHVVALD--SSGSIIWRCRT-GG----PIFAGPCTSFALPSQVLICSRNGSIYSFEQESGNLL 721 (829)
Q Consensus 659 l~~~~~~g~i~~~d--~~g~~~w~~~~-~~----~~~~~~~~~~~~~~~i~~~t~~g~l~~~d~~tG~~~ 721 (829)
.+..+.++....+. ..+...+.... .. ...... .....++.++..+.++.++.++..+++..
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP-AYSQKAGRLVWPTYTGKIHQIDLSSGDAK 229 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCC-EEETTTTEEEEEBTTSEEEEEECTTSSCE
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeec-cccCCCCeEEEecCCCeEEEEecCCCcEE
Confidence 33333444444443 33333322111 10 011111 11223566777888999999998887653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.83 E-value=6e-08 Score=99.89 Aligned_cols=147 Identities=12% Similarity=-0.027 Sum_probs=102.7
Q ss_pred eCCCeEEEEecC-C-CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCee
Q 003331 483 KDSDIYLFVGSH-S-HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 483 ~d~~~~l~igs~-~-g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
+.++..|++++. + ..|+.||..+|+..- +..+........+++++..+++++.++.++.|+..+++.......+...
T Consensus 51 spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
T d1k32a3 51 GGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 129 (360)
T ss_dssp CSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred CCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc
Confidence 445566665543 3 368999999988763 3333333456788999999999999999999999999987766655544
Q ss_pred eeeeeeecCCCEEEEec----------cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEcc
Q 003331 561 KCQPVVDAPRQLIWCGS----------HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVK 630 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs----------~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~ 630 (829)
...+.+.+++..|+++. .++.++.||..+++......... ....+.+..++..|++++.++.+..|+..
T Consensus 130 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENS-HDYAPAFDADSKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSS-BEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeeccccc-ccccccccCCCCEEEEEeCCCceEccccc
Confidence 45566676667666542 23468899999988776554433 33345667777888888888877777754
Q ss_pred C
Q 003331 631 A 631 (829)
Q Consensus 631 ~ 631 (829)
.
T Consensus 209 ~ 209 (360)
T d1k32a3 209 V 209 (360)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.67 E-value=2.9e-06 Score=89.48 Aligned_cols=273 Identities=12% Similarity=0.062 Sum_probs=148.0
Q ss_pred EEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe--eccCC---cccccc
Q 003331 532 VVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK--LPCGG---SIFGSP 606 (829)
Q Consensus 532 ~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~--~~~~~---~~~~~~ 606 (829)
++...||.|..||..||+++.++..+..+ ....+++++..+|+++.|+.+..||.++++.... +.... ....++
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~~g~~~-~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSK 114 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEECCSSE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCCCe-eEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEee
Confidence 34556899999999999999999887654 4567888899999999999999999999875443 33222 233455
Q ss_pred eeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcceeee-----------eeeecCCEEEEEee-CCeEEEEc-
Q 003331 607 AIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPAFASL-----------CITSANRHVICCLV-DGHVVALD- 672 (829)
Q Consensus 607 ~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~-----------~~~~~~~~l~~~~~-~g~i~~~d- 672 (829)
.+.+++.+++++. .++.+..||..+ +..+............. ....++..+++... .+.+..++
T Consensus 115 ~~spDG~~l~v~~~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 115 FKGYEDRYTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp STTCTTTEEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eecCCCCEEEEeecCCCeEEEEcCCc--cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 5666678887766 578899999887 66665543322111111 12222333333222 12233333
Q ss_pred CCCCE--EEEeecCCceeecCcccccC-CCeEEEEe-eCCeEEEEeCCCCcEEEEEecCCcccccccccccccccccccc
Q 003331 673 SSGSI--IWRCRTGGPIFAGPCTSFAL-PSQVLICS-RNGSIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCL 748 (829)
Q Consensus 673 ~~g~~--~w~~~~~~~~~~~~~~~~~~-~~~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 748 (829)
.++.. +.....+..+.... ... +..++++. .+..+..++..+++..-....+........... ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 261 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGG---WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF--------VH 261 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEE---ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEE--------EE
T ss_pred ccccceeeEEeccCCccEeee---ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeee--------ec
Confidence 22221 11122222221111 222 34555554 356788999999998766554332211100000 00
Q ss_pred CCCcEEEEE--ccCCcEEEEEeecCccccccccccccceeeeeeccCCc----ccccceEECCEEEEe-------eeCCe
Q 003331 749 SIDRLVCIC--TSSGSIHILRVNLDVTGKENQSKDHMVQEFAKLELQGD----IFSSPVMIGGRVFVG-------CRDDY 815 (829)
Q Consensus 749 ~~~~~l~~~--~~~G~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~l~vg-------~~~g~ 815 (829)
...+.++.. ..++.+..++...... ..+.. +........+. +..+| ++.+|++. ..++.
T Consensus 262 ~~~~~~~~~~~~~d~~v~~~~~~~~~~--~~~~~----~~~~~l~g~~~~v~~v~~sP--dg~~l~v~~~~~~s~~~~~t 333 (426)
T d1hzua2 262 PKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAW----KKVAELQGQGGGSLFIKTHP--KSSHLYVDTTFNPDARISQS 333 (426)
T ss_dssp TTTEEEEEEECTTTCEEEEEECCTTTC--TTTBT----SEEEEEECSSSCCCCEECCT--TCSEEEECCTTCSSHHHHTC
T ss_pred CCCCceEEeccCCCceEEEeecccccc--ccccc----eEeEEEecCCCceeEEEcCC--CCceEEEeecCCCCcccCCE
Confidence 113333332 3466677776553311 11111 12222222222 12233 45677752 34678
Q ss_pred EEEEecccccc
Q 003331 816 IYCIALETQHL 826 (829)
Q Consensus 816 l~~~d~~tg~~ 826 (829)
|..||.++++.
T Consensus 334 v~vwd~~t~~~ 344 (426)
T d1hzua2 334 VAVFDLKNLDA 344 (426)
T ss_dssp EEEEETTCTTS
T ss_pred EEEEECCCCCc
Confidence 99999988764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.67 E-value=1.2e-05 Score=79.37 Aligned_cols=215 Identities=14% Similarity=0.106 Sum_probs=122.1
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCC---ee
Q 003331 485 SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCG---EV 560 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~---~~ 560 (829)
.++.||... ..++|+.+|+++|+.. .+..+..+ .+..+..+ +.+|+++. .+|+.+|..+|+......... ..
T Consensus 28 ~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~-~~i~~~~d-g~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~ 103 (295)
T d2ghsa1 28 ASGTAWWFNILERELHELHLASGRKT-VHALPFMG-SALAKISD-SKQLIASD-DGLFLRDTATGVLTLHAELESDLPGN 103 (295)
T ss_dssp TTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-EEEEEEET-TEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCc-EEEEEecC-CCEEEEEe-CccEEeecccceeeEEeeeecCCCcc
Confidence 345555443 5788999999998765 34555543 34445455 57888874 579999999998754333221 12
Q ss_pred eeeeeeecCCCEEEEecc-------CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEccCC
Q 003331 561 KCQPVVDAPRQLIWCGSH-------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVKAL 632 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~-------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~~~ 632 (829)
...-...+.+|.+|+++. .+.+|.++ +|+...... .-.....+.++.+++.+|+. +..+.|++++.+..
T Consensus 104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~ 180 (295)
T d2ghsa1 104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR 180 (295)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred cceeeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEeeeccc
Confidence 222233445778999864 23455544 555433221 11222345566666766655 55788999987642
Q ss_pred Cce-----EEEeeccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEee
Q 003331 633 PFH-----TLWLHELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR 706 (829)
Q Consensus 633 ~g~-----~~w~~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~ 706 (829)
.+. ..+.................++++|++.. .+.|.+||.+|+++-.+..+.+-.++.+.-....+.||+.|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 181 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp TCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence 221 11111111111122223345778999986 456999998899887777654322222221123357888764
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.67 E-value=1.8e-06 Score=89.12 Aligned_cols=257 Identities=10% Similarity=-0.087 Sum_probs=150.2
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe----------CCEEEEEEcCCCcEEEEEecCCee-----
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY----------KGKIYFLDYLTGDIYWTFQTCGEV----- 560 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~----------dg~l~~~d~~tG~~~w~~~~~~~~----- 560 (829)
..++.+|..+++.+-....+... .+.+++|+..+|+.+. ++.|..||..++++++....+...
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence 45889999999998776655432 4678899998998653 567999999999999987654221
Q ss_pred --eeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEE
Q 003331 561 --KCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTL 637 (829)
Q Consensus 561 --~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~ 637 (829)
.....+.+++..+|++. .++.+..||..+++..............+ ......+..+.+|.+..++.... +...
T Consensus 124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~Dg~~~~~~~~~~-~~~~ 199 (368)
T d1mdah_ 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP---GAAATHYLGSCPASLAASDLAAA-PAAA 199 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE---EETTEEECCCCTTSCEEEECCSS-CCCC
T ss_pred CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc---CCCceEEEEcCCCCEEEEEecCC-ceee
Confidence 12345777888888876 46889999999999988876654332221 22345566667888888876652 3333
Q ss_pred EeeccCC----cceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEE-EEeecCCc-------eee--cCcc-cccCCCeE
Q 003331 638 WLHELEV----PAFASLCITSANRHVICCLVDGHVVALD-SSGSII-WRCRTGGP-------IFA--GPCT-SFALPSQV 701 (829)
Q Consensus 638 w~~~~~~----~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~-w~~~~~~~-------~~~--~~~~-~~~~~~~i 701 (829)
|...... ............+. ++.+.++.++.++ ..+... +....... ... ...+ .....+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 278 (368)
T d1mdah_ 200 GIVGAQCTGAQNCSSQAAQANYPGM-LVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTE-EEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred eeeecccccccccceeecccccCcE-EEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence 3321110 00011111112233 3334456677777 433322 21110000 000 0001 11234567
Q ss_pred EEEeeCC---------eEEEEeCCCCcEEEEEecCCccccccccccccccccccccCCCc-EEEEE-ccCCcEEEEEeec
Q 003331 702 LICSRNG---------SIYSFEQESGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDR-LVCIC-TSSGSIHILRVNL 770 (829)
Q Consensus 702 ~~~t~~g---------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~~G~l~~~d~~~ 770 (829)
|+...++ .|+.||.++++.+.....+.......+. .++. ++|+. ..++.|++||..+
T Consensus 279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~s------------pDG~~~ly~s~~~~~~v~v~D~~t 346 (368)
T d1mdah_ 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA------------QDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEEC------------CSSSCEEEEEETTTTEEEEEESSS
T ss_pred EEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEEC------------CCCCEEEEEEeCCCCeEEEEECCC
Confidence 7765432 5889999999987655443332221111 1243 45554 4578899999987
Q ss_pred C
Q 003331 771 D 771 (829)
Q Consensus 771 ~ 771 (829)
+
T Consensus 347 g 347 (368)
T d1mdah_ 347 D 347 (368)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.63 E-value=5e-06 Score=87.56 Aligned_cols=192 Identities=14% Similarity=0.092 Sum_probs=127.6
Q ss_pred EEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE--EEeeccCC---cccccc
Q 003331 532 VVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC--VYKLPCGG---SIFGSP 606 (829)
Q Consensus 532 ~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~--~w~~~~~~---~~~~~~ 606 (829)
++.+.+|.|..||..+++++-++..+..+ ....+++++.++|+++.|+.+..||..+++. .-.+..+. ....++
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~g~~~-~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~ 114 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECSSCE-EEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCCCCe-eEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence 45556889999999999999999877554 4557888899999999999999999988763 33333322 233445
Q ss_pred eeecCCCEEEE-EecCCeEEEEEccCCCceEEEeeccCC-----------cceeeeeeeecCCEEEEE-eeCCeEEEEc-
Q 003331 607 AIDEVHDVLYV-ASTSGRLTAISVKALPFHTLWLHELEV-----------PAFASLCITSANRHVICC-LVDGHVVALD- 672 (829)
Q Consensus 607 ~~~~~~~~l~v-~t~~g~l~~~~~~~~~g~~~w~~~~~~-----------~~~~s~~~~~~~~~l~~~-~~~g~i~~~d- 672 (829)
.+++++..+|+ +..++.+..||.++ ++.+-...... +.......+.++..+++. ..++.+..++
T Consensus 115 ~~SpDG~~l~vs~~~~~~v~i~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 115 MEGWEDKYAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp STTCTTTEEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ccCCCCCEEEEEcCCCCeEEEEeCcc--ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 56666788876 44588999999887 76655443221 111223344455555444 4467888888
Q ss_pred CCCC--EEEEeecCCceeecCcccccCCC-eEEEEee-CCeEEEEeCCCCcEEEEEecCCc
Q 003331 673 SSGS--IIWRCRTGGPIFAGPCTSFALPS-QVLICSR-NGSIYSFEQESGNLLWEYSVGDP 729 (829)
Q Consensus 673 ~~g~--~~w~~~~~~~~~~~~~~~~~~~~-~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~ 729 (829)
.+++ .++....+....... ...++ .+++++. ++.+..+|..+++..+....+..
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~---~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~ 250 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGG---LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ 250 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEE---ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCcceEEEEcccCccccce---ECCCCCEEEEeccccceEEEeecccceEEEEeccCcc
Confidence 6665 346666554332222 22344 4666654 56789999999999888776543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.6e-06 Score=88.75 Aligned_cols=237 Identities=10% Similarity=0.067 Sum_probs=140.5
Q ss_pred CCeEEEEecCCCcEEEEECCCCcE------EEEEEcCC-ce---eeceEEee---CCcEEEEEEeCCEEEEEEcCCCcE-
Q 003331 485 SDIYLFVGSHSHKFICADAKRSSV------LWEIKLEG-RI---ECSAAVLA---DFSQVVVGCYKGKIYFLDYLTGDI- 550 (829)
Q Consensus 485 ~~~~l~igs~~g~l~~~d~~tg~~------~w~~~~~~-~~---~~~~~~~~---~~~~v~vg~~dg~l~~~d~~tG~~- 550 (829)
.++.++.++.|+.|..||..+++. ......+. .. ........ +...+..++.||.+..|+..++..
T Consensus 23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~ 102 (393)
T d1sq9a_ 23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET 102 (393)
T ss_dssp CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred eCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence 356888999999999999876542 11211111 11 00111111 112455677899998887544322
Q ss_pred --EEEEecC--------Ceeeeeeeeec-----CCCEEEEeccCCeEEEEEcCCCe-------------E--EEeecc--
Q 003331 551 --YWTFQTC--------GEVKCQPVVDA-----PRQLIWCGSHDHNLYALDFRNYR-------------C--VYKLPC-- 598 (829)
Q Consensus 551 --~w~~~~~--------~~~~~~~~~~~-----~~~~i~~gs~~g~l~~~d~~tg~-------------~--~w~~~~-- 598 (829)
.+..... ..... ..+.. ....+.+++.||.+..||..... . ......
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (393)
T d1sq9a_ 103 KKVIFEKLDLLDSDMKKHSFWA-LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM 181 (393)
T ss_dssp CCEEEEEECCSCTTGGGSCEEE-EEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS
T ss_pred eeeeccccceeeeccCCCceEE-EEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceeccc
Confidence 2211110 11111 11111 13456778889999999864211 0 011111
Q ss_pred -CCcccccceeecCCCEEEEEecCCeEEEEEccCCCceEEEeeccC------CcceeeeeeeecCCEEEEEeeCCe---E
Q 003331 599 -GGSIFGSPAIDEVHDVLYVASTSGRLTAISVKALPFHTLWLHELE------VPAFASLCITSANRHVICCLVDGH---V 668 (829)
Q Consensus 599 -~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~~~g~~~w~~~~~------~~~~~s~~~~~~~~~l~~~~~~g~---i 668 (829)
......+..+.+ ++.+++++.||.|..||..+ ++.+..++.. .....+..+.+++..++.|+.|+. +
T Consensus 182 ~~~~~~~~v~~s~-dg~lasgs~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i 258 (393)
T d1sq9a_ 182 TPSQFATSVDISE-RGLIATGFNNGTVQISELST--LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCI 258 (393)
T ss_dssp SSCCCCCEEEECT-TSEEEEECTTSEEEEEETTT--TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEE
T ss_pred CCCCcEEEEEECC-CCEEEEEeCCCcEEEEeecc--cccccccccccccccccceEEEcccccccceeeeecCCCCccee
Confidence 111122334444 46888999999999999988 8877665432 223456677788999999988764 7
Q ss_pred EEEc-CCCCEEEEeecCC--------------ceeecCccccc-CCCeEEEEeeCCeEEEEeCCCCcEEEEEecCC
Q 003331 669 VALD-SSGSIIWRCRTGG--------------PIFAGPCTSFA-LPSQVLICSRNGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 669 ~~~d-~~g~~~w~~~~~~--------------~~~~~~~~~~~-~~~~i~~~t~~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
..|| .+|+.++.+.... .+.+. ... .+..|+.++.|+.|..||.++|+.+.++..+.
T Consensus 259 ~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l---~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 259 TLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp EEEETTTCCEEEEECBC--------CCBSBSSCEEEE---EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred eecccccceeeeeeccccccccceeeeecccCceeee---ccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 7889 8999887765321 12211 122 23468888999999999999999998887543
|
| >d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Type I fatty acid synthase ACP domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.4e-09 Score=82.15 Aligned_cols=60 Identities=20% Similarity=0.175 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcccCc---ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHH
Q 003331 290 LLQVIRKAFGHALMV---EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 290 ~~~~l~~~~~~~l~~---~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l 350 (829)
.++.|.++|+++|++ ++|+++++||++|+|||+|++|.++| .+++..++ ++|+..|++..
T Consensus 5 ~e~~l~~~va~~Lgi~~~~~I~~~~~f~~lG~DSl~a~el~~~i~~~~g~~l~~~~l~-~~Ti~~L~el~ 73 (76)
T d2pnga1 5 AQRDLVKAVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLPIREVR-QLTLRKLQEMS 73 (76)
T ss_dssp CCCCGGGTHHHHHTCSSCTTSCSSSCHHHHTCSSHHHHHHHHHHHHHTCCCCCHHHHT-TCCSHHHHHTS
T ss_pred HHHHHHHHHHHHhccCCHhhCCCCCCHHHhCCcHHHHHHHHHHHHHHhCCCCCHHHHH-HhhHHHHHHHH
Confidence 445677788888886 46999999999999999999999875 47888887 49999998753
|
| >d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl carrier protein, ACT ACP {Streptomyces coelicolor, A3(2) [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Actinorhodin polyketide synthase acyl carrier protein, ACT ACP species: Streptomyces coelicolor, A3(2) [TaxId: 1902]
Probab=98.55 E-value=2.3e-08 Score=77.64 Aligned_cols=68 Identities=19% Similarity=0.129 Sum_probs=57.5
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+.+++.+.+.++. +.+..+.+|+++|+|||.+++|..+| +++...+|++||++.|+.++....
T Consensus 7 ~d~l~~~l~e~~~~~~g~~~~~i~~d~~f~dlG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~Tv~~l~~~i~~~l 82 (86)
T d2af8a_ 7 TDDLRRALVECAGETDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp HHHHHHHHHHTTCCCSCCCCSSCSCSSSHHHHTCSSHHHHHHHHHHHHHHTCCCCCSTTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCCccccccCCCHHHcCCCHHHHHHHHHHHHHHHccCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 356777788877777775 56888999999999999999998865 488899999999999999998754
|
| >d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=5e-08 Score=76.07 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
..++.+.+.++|+++|+. +.+.++++|+++|+|||.+++|..+| .++...++++||+..|+.++.++.
T Consensus 6 ~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~dlG~DSl~~v~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (85)
T d1vkua_ 6 RKKLIAKFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKKL 81 (85)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHhcCcchHHHHHHHHHHHHccCCCCHHHHHHcCCHHHHHHHHHHHH
Confidence 457888999999999987 46999999999999999999998865 588899999999999999998764
|
| >d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl carrier {Streptomyces rimosus [TaxId: 1927]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Oxytetracycline polyketide synthase acyl carrier species: Streptomyces rimosus [TaxId: 1927]
Probab=98.53 E-value=3.7e-08 Score=78.03 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
.+++.+.+++++.+.+++ +.+..+.+|+++|+|||.+++|..+| +++...+|++||++.|+.++..+.
T Consensus 6 ~d~l~~~lre~~~~~~~~~~~~i~~d~~f~dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Ti~~l~~~l~~~l 81 (95)
T d1nq4a_ 6 LSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNASL 81 (95)
T ss_dssp HHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHhCCChhhcccCCCHHHcCCcHHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHHHHHhc
Confidence 457888899999988886 56888999999999999999998875 478889999999999999998754
|
| >d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Hypothetical protein Atu2571 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.52 E-value=3.5e-08 Score=76.24 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=50.8
Q ss_pred HHHHHHHHhccc----CcceeccCCCccccCCChHHHHHHHHHc------CCcchhhhc--CCCHHHHHHHHHhhc
Q 003331 291 LQVIRKAFGHAL----MVEEVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYN--FPTPSKLEIALLEKK 354 (829)
Q Consensus 291 ~~~l~~~~~~~l----~~~~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~--~pt~~~la~~l~~~~ 354 (829)
++.+++++.+++ ..+.++++++||++|+|||.+++|...| .++...++. +||+..|+.++....
T Consensus 2 ~e~i~~il~~~~~l~~~~~~i~~~~~f~dlG~DSl~~~~l~~~le~~f~v~i~~~~l~~~~~~Ti~~la~~i~~~~ 77 (83)
T d2jq4a1 2 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVKLIL 77 (83)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHcCCCCCHHHHhCccHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345566666554 3477999999999999999999998865 467778874 599999999998754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.52 E-value=2.4e-06 Score=88.13 Aligned_cols=242 Identities=11% Similarity=-0.030 Sum_probs=145.8
Q ss_pred EEeeCCCeEEEEecC----------CCcEEEEECCCCcEEEEEEcCCce-------eeceEEeeCCcEEEEEEe-CCEEE
Q 003331 480 VVLKDSDIYLFVGSH----------SHKFICADAKRSSVLWEIKLEGRI-------ECSAAVLADFSQVVVGCY-KGKIY 541 (829)
Q Consensus 480 v~~~d~~~~l~igs~----------~g~l~~~d~~tg~~~w~~~~~~~~-------~~~~~~~~~~~~v~vg~~-dg~l~ 541 (829)
+....++..||+.+. ++.|..||..|+++.+....+... .....+++|+++++++.. ++.+.
T Consensus 70 ~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 70 AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred ceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 444556777887543 567999999999999987754321 124678999999998874 68899
Q ss_pred EEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeE-EEeeccC----CcccccceeecCCCEEE
Q 003331 542 FLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRC-VYKLPCG----GSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 542 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~-~w~~~~~----~~~~~~~~~~~~~~~l~ 616 (829)
.||+.++++......+......+ .....++..+.||.+..++...+.. .|..... .............+ .+
T Consensus 150 ~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 225 (368)
T d1mdah_ 150 GLSVPGASDDQLTKSASCFHIHP---GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPG-ML 225 (368)
T ss_dssp EEEETTTEEEEEEECSSCCCCEE---EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTT-EE
T ss_pred EEECCCCcEeEEeeccCcceEcc---CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCc-EE
Confidence 99999999998877655432222 2335556667788888887655432 3322111 11111111122123 33
Q ss_pred EEecCCeEEEEEccCCCceEEEeeccCCc----------ceeeeeeeecCCEEEEEeeCC---------eEEEEc-CCCC
Q 003331 617 VASTSGRLTAISVKALPFHTLWLHELEVP----------AFASLCITSANRHVICCLVDG---------HVVALD-SSGS 676 (829)
Q Consensus 617 v~t~~g~l~~~~~~~~~g~~~w~~~~~~~----------~~~s~~~~~~~~~l~~~~~~g---------~i~~~d-~~g~ 676 (829)
+.+.++.++.++................. ......+..+++.+|+...++ .+..+| .+++
T Consensus 226 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~ 305 (368)
T d1mdah_ 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCc
Confidence 34456677888776522222222211110 012345566778888775433 478899 8898
Q ss_pred EEEEeecCCceeecCcccccCCC--eEEEEe-eCCeEEEEeCCCCcEEEEEecCC
Q 003331 677 IIWRCRTGGPIFAGPCTSFALPS--QVLICS-RNGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 677 ~~w~~~~~~~~~~~~~~~~~~~~--~i~~~t-~~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
.+.+...+..+.... ...|+ .+|+.. .++.|+.||..+|+.+-+++.+.
T Consensus 306 ~~~~~~~~~~~~~~a---~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 306 TSGPISNGHDSDAII---AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEECCEEEEEECEEE---ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred EeEEecCCCceeEEE---ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 877665543332211 22243 466654 46889999999999987776543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.49 E-value=2.4e-05 Score=77.26 Aligned_cols=199 Identities=10% Similarity=0.042 Sum_probs=111.0
Q ss_pred ceEEeeCCcEEE-EEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccC
Q 003331 521 SAAVLADFSQVV-VGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCG 599 (829)
Q Consensus 521 ~~~~~~~~~~v~-vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~ 599 (829)
++......+.|| +--..+.|+.||+++|+.. .+..+..+.+ .... .++.+|+++.+ .++.+|+++|+........
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~~~~~~-i~~~-~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSA-LAKI-SDSKQLIASDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEE-EEEE-ETTEEEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECCCCcEE-EEEe-cCCCEEEEEeC-ccEEeecccceeeEEeeee
Confidence 455554444444 4445789999999998765 3444444433 2333 34778888764 6999999999865433221
Q ss_pred ----CcccccceeecCCCEEEEEec-------CCeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCe
Q 003331 600 ----GSIFGSPAIDEVHDVLYVAST-------SGRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGH 667 (829)
Q Consensus 600 ----~~~~~~~~~~~~~~~l~v~t~-------~g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~ 667 (829)
........++. ++.+|+++. .+.++.++ + |+..-... .........++.+++.+|+.. ..+.
T Consensus 98 ~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~--~--g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--K--GKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp TTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--T--TEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCE
T ss_pred cCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec--C--CcEEEEee-ccCCcceeeecCCCceEEEeecccce
Confidence 11233444554 577898874 23344443 3 43322111 111123445566677666654 4677
Q ss_pred EEEEc-C-C-CC----EEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCcc
Q 003331 668 VVALD-S-S-GS----IIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPI 730 (829)
Q Consensus 668 i~~~d-~-~-g~----~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~~ 730 (829)
|++++ . + +. ........+.......+..+.+|+||++.. .|.|.+||+ +|+++-.+..+...
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~ 241 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ 241 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCc
Confidence 88876 2 2 21 111111111100111123567899999986 456999996 58888777776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.49 E-value=3.8e-05 Score=75.18 Aligned_cols=226 Identities=12% Similarity=0.111 Sum_probs=129.4
Q ss_pred CCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCc---e---eeceEEeeCCcEEEEEE--eCCEEEEEEcCCCcEEEEE
Q 003331 484 DSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGR---I---ECSAAVLADFSQVVVGC--YKGKIYFLDYLTGDIYWTF 554 (829)
Q Consensus 484 d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~---~---~~~~~~~~~~~~v~vg~--~dg~l~~~d~~tG~~~w~~ 554 (829)
+.++.||++. .+++|..||.+ |+.++.+..... . .....+..+.+..++.. .++.|..++ .+|+....+
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~~~~~~ 108 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKF 108 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEE
T ss_pred cCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-ccccceeec
Confidence 4567799885 46789999964 888887743211 1 11223333434444432 245777777 678887776
Q ss_pred ecCCee-eeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccCCc--ccccceeecCCCEEEEEe-cCCeEEEEEc
Q 003331 555 QTCGEV-KCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCGGS--IFGSPAIDEVHDVLYVAS-TSGRLTAISV 629 (829)
Q Consensus 555 ~~~~~~-~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~~~--~~~~~~~~~~~~~l~v~t-~~g~l~~~~~ 629 (829)
...... .....++ ..+.+|+. ...+.+..++ .+|+.+.++..... ....++++. ++.+|++. ..+.|+.+|.
T Consensus 109 ~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~-~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~ 185 (279)
T d1q7fa_ 109 GATILQHPRGVTVD-NKGRIIVVECKVMRVIIFD-QNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNY 185 (279)
T ss_dssp CTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEEC-TTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEET
T ss_pred CCCcccccceeccc-cCCcEEEEeeccceeeEec-cCCceeecccccccccccceeeecc-ceeEEeeeccccceeeeec
Confidence 543221 2223344 34455554 4556788888 45777766543321 222333444 46677655 4678899987
Q ss_pred cCCCceEEEeeccCCcc--eeeeeeeecCCEEEEEee--CCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe
Q 003331 630 KALPFHTLWLHELEVPA--FASLCITSANRHVICCLV--DGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 630 ~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~l~~~~~--~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t 705 (829)
+ |+.++++...... ....++.. ++.+|++.. +..|.+++.+|+.++.+..........-+..+.++.||+..
T Consensus 186 ~---G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~ 261 (279)
T d1q7fa_ 186 E---GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLAS 261 (279)
T ss_dssp T---CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEE
T ss_pred C---CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEe
Confidence 6 7777776432211 13334444 446777753 33588888889988776543221111112344577888887
Q ss_pred eCCeEEEEeCCCC
Q 003331 706 RNGSIYSFEQESG 718 (829)
Q Consensus 706 ~~g~l~~~d~~tG 718 (829)
.++.|..|.-.+.
T Consensus 262 ~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 262 KDYRLYIYRYVQL 274 (279)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEeeee
Confidence 7777777765543
|
| >d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: apo-D-alanyl carrier protein domain: apo-D-alanyl carrier protein species: Lactobacillus casei [TaxId: 1582]
Probab=98.49 E-value=7.6e-08 Score=73.57 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHhcccCcc--eeccCCCccccCC-ChHHHHHHHHHcC------Ccchhhh--cCCCHHHHHHHHHh
Q 003331 288 SDLLQVIRKAFGHALMVE--EVLHHDNFFTMGG-NSIAAAHVAHNLG------IDMRLIY--NFPTPSKLEIALLE 352 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~~--~i~~~~~Ff~lGg-dSl~a~~l~~~l~------~~~~~~~--~~pt~~~la~~l~~ 352 (829)
.++++.+.++|+++++.+ .+.++.+||++|| |||.+++|...|+ ++...++ +++|+..|++++.+
T Consensus 3 e~I~~~v~~il~~~l~~~~~~i~~d~~l~e~gglDSl~~vel~~~ie~~fgi~i~~~~l~~~~~~Tv~~l~~~v~~ 78 (80)
T d1dv5a_ 3 EAIKNGVLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQ 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCccccccCCCCHHHHHHHHHHHHHHHCCCCCHHHhhHHhCCCHHHHHHHHHH
Confidence 468899999999999874 5888999999986 9999999998763 6777887 78999999999875
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.42 E-value=3.6e-05 Score=75.34 Aligned_cols=228 Identities=14% Similarity=0.130 Sum_probs=128.5
Q ss_pred ceEEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCe----e--eeeeeeecCCCEEEE-e-ccCCeEEEEEcCCCe
Q 003331 521 SAAVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGE----V--KCQPVVDAPRQLIWC-G-SHDHNLYALDFRNYR 591 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~----~--~~~~~~~~~~~~i~~-g-s~~g~l~~~d~~tg~ 591 (829)
.+++..++ .||+.. .++.|..|| .+|+.++.+..... . .....+.+..+..++ . +.++.+..++ .+|+
T Consensus 27 gvavd~dg-~i~VaD~~n~rI~v~d-~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~g~ 103 (279)
T d1q7fa_ 27 GVAVNAQN-DIIVADTNNHRIQIFD-KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQ 103 (279)
T ss_dssp EEEECTTC-CEEEEEGGGTEEEEEC-TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSC
T ss_pred EEEEcCCC-CEEEEECCCCEEEEEe-CCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cccc
Confidence 34555554 577764 467899999 56998887743211 1 111223334444443 3 3345677777 4677
Q ss_pred EEEeeccCC-cccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCCcc--eeeeeeeecCCEEEEEe-eCC
Q 003331 592 CVYKLPCGG-SIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEVPA--FASLCITSANRHVICCL-VDG 666 (829)
Q Consensus 592 ~~w~~~~~~-~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~~~--~~s~~~~~~~~~l~~~~-~~g 666 (829)
....+.... .......++. .+.+|+.. ..+.+..++.+ |+.+..+...... ....++. .++.+|+.. ..+
T Consensus 104 ~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~~~~ 178 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAH 178 (279)
T ss_dssp EEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT---SCEEEEEECTTTCSSEEEEEEC-SSSEEEEEEGGGT
T ss_pred ceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC---Cceeecccccccccccceeeec-cceeEEeeecccc
Confidence 766654322 1122334444 34555554 45667788765 6666655332221 1223333 455677664 467
Q ss_pred eEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEee--CCeEEEEeCCCCcEEEEEecCCccc--ccccccccccc
Q 003331 667 HVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR--NGSIYSFEQESGNLLWEYSVGDPIT--ASAYIDEHLQL 742 (829)
Q Consensus 667 ~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~--~g~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~ 742 (829)
.|+.+|.+|+.++++...+.......+..+.++.||++.. ++.|..++ .+|++++.+....... ....++.
T Consensus 179 ~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~---- 253 (279)
T d1q7fa_ 179 CVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD---- 253 (279)
T ss_dssp EEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET----
T ss_pred ceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC----
Confidence 8999998899888875433211111234556788998853 34588888 5699987765433221 1111221
Q ss_pred ccccccCCCcEEEEEccCCcEEEEEee
Q 003331 743 KLESCLSIDRLVCICTSSGSIHILRVN 769 (829)
Q Consensus 743 ~~~~~~~~~~~l~~~~~~G~l~~~d~~ 769 (829)
++.+++.+.+..|.+|.-+
T Consensus 254 --------dG~l~V~~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 254 --------DGSVVLASKDYRLYIYRYV 272 (279)
T ss_dssp --------TTEEEEEETTTEEEEEECS
T ss_pred --------CCcEEEEeCCCeEEEEEee
Confidence 5677888778888877644
|
| >d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier protein, Fren ACP {Streptomyces roseofulvus [TaxId: 33902]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Frenolicin polyketide synthase acyl carrier protein, Fren ACP species: Streptomyces roseofulvus [TaxId: 33902]
Probab=98.42 E-value=6.6e-08 Score=73.88 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcccCcc-eeccCCCccccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 289 DLLQVIRKAFGHALMVE-EVLHHDNFFTMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~~-~i~~~~~Ff~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
++.+.|++.+....+.. .+..+..|+++|+|||.+++|..+| .++...+|++||++.|+.++....
T Consensus 7 ~l~~il~e~~g~~~~~~~~~d~d~~f~dlG~DSl~~~el~~~le~~~g~~l~~~~~~~~~Ti~~l~~~v~~~~ 79 (82)
T d1or5a_ 7 DLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTP 79 (82)
T ss_dssp HHHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCcccccCCCcCcCHHHcCCChHhHHHHHHHHHHHHhCcCCHHHHHcCCCHHHHHHHHHhcc
Confidence 34445555444443332 3566788999999999999999876 378888999999999999987654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=2.6e-06 Score=88.74 Aligned_cols=115 Identities=9% Similarity=0.015 Sum_probs=92.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEeCC---EEEEEEcCCCcEEEEEec
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCYKG---KIYFLDYLTGDIYWTFQT 556 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~dg---~l~~~d~~tG~~~w~~~~ 556 (829)
++.+++|+.|+.|..||..+++.+..+... .....+..+++++..|++|+.|+ .+..||.++|+.++.+..
T Consensus 195 dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~ 274 (393)
T d1sq9a_ 195 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 274 (393)
T ss_dssp TSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred CCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecc
Confidence 568899999999999999999988776543 23345677888999999999886 488999999999887642
Q ss_pred -------------CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCC
Q 003331 557 -------------CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 557 -------------~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
+.....+..+.+++..|+.++.|+.|+.||.++|+++..+..+.
T Consensus 275 ~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 275 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred ccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcC
Confidence 12223445667778899999999999999999999999887554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.38 E-value=3.2e-05 Score=77.04 Aligned_cols=216 Identities=12% Similarity=0.152 Sum_probs=118.3
Q ss_pred CCEEEEEEcCCCcEEEEEec--CC--eeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeec-cCCccc---cccee
Q 003331 537 KGKIYFLDYLTGDIYWTFQT--CG--EVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLP-CGGSIF---GSPAI 608 (829)
Q Consensus 537 dg~l~~~d~~tG~~~w~~~~--~~--~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~-~~~~~~---~~~~~ 608 (829)
++.|+.||+++++....... .. .......+..+++.+|++...+.+..+|++++....... ..+... ....+
T Consensus 45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~ 124 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF 124 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence 46799999988876432211 11 112234455566789998887889999987664433221 122211 22445
Q ss_pred ecCCCEEEEEec----------------CCeEEEEEccCCCceEEEee-ccCCcceeeeeeeecCC----EEEEE-eeCC
Q 003331 609 DEVHDVLYVAST----------------SGRLTAISVKALPFHTLWLH-ELEVPAFASLCITSANR----HVICC-LVDG 666 (829)
Q Consensus 609 ~~~~~~l~v~t~----------------~g~l~~~~~~~~~g~~~w~~-~~~~~~~~s~~~~~~~~----~l~~~-~~~g 666 (829)
+. ++.+|++.. .|.++.++.+ |+..... ....+ ...++.++++ .+|++ +..+
T Consensus 125 d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d---g~~~~~~~~~~~p--NGi~~~~d~d~~~~~lyv~d~~~~ 198 (314)
T d1pjxa_ 125 DY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMIQVDTAFQFP--NGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp CT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEEEEEEEESSE--EEEEEEECTTSCEEEEEEEETTTT
T ss_pred CC-CCCEEEecCccCcccccccceeccCCceEEEEeec---CceeEeeCCccee--eeeEECCCCCcceeEEEEEeeccc
Confidence 54 577888753 2456666654 3322111 11111 2234444433 56665 3467
Q ss_pred eEEEEc--CCCCEEEEe---ecCCceeecC-cccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCCccccccccccc
Q 003331 667 HVVALD--SSGSIIWRC---RTGGPIFAGP-CTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGDPITASAYIDEH 739 (829)
Q Consensus 667 ~i~~~d--~~g~~~w~~---~~~~~~~~~~-~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 739 (829)
.|+.++ .+|.+.+.. .........| -+..+.+|+||++.. .+.|++||+++|+++-....+.......++..
T Consensus 199 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~- 277 (314)
T d1pjxa_ 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP- 277 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECT-
T ss_pred ceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeC-
Confidence 788887 455544321 1111101111 133567889999875 56799999998887655555433222222211
Q ss_pred cccccccccCCCcEEEEEc-cCCcEEEEEee
Q 003331 740 LQLKLESCLSIDRLVCICT-SSGSIHILRVN 769 (829)
Q Consensus 740 ~~~~~~~~~~~~~~l~~~~-~~G~l~~~d~~ 769 (829)
+++.+|+.+ .+|.|+.++..
T Consensus 278 ----------d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 278 ----------QTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp ----------TSSEEEEEETTTTEEEEEECS
T ss_pred ----------CCCEEEEEECCCCcEEEEECC
Confidence 255677764 56789888865
|
| >d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.33 E-value=2.5e-07 Score=76.62 Aligned_cols=69 Identities=10% Similarity=0.134 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhcC
Q 003331 287 ASDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKKG 355 (829)
Q Consensus 287 ~~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~~ 355 (829)
..++...|+++|+++|++ ++|..+.+|+ ++|+|||.+++|..+| .++...+|++||+..|+.+|.....
T Consensus 5 ~~~i~~~l~~iv~~~l~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~le~~f~i~i~~~~~~~~~Tv~~l~~~l~~~~~ 82 (115)
T d1klpa_ 5 QEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQKLEE 82 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCCCccccCcccchhhhcccchhHHHHHHHHHHHHHCCCCCHHHHHhCccHHHHHHHHHHHhc
Confidence 467889999999999998 4688999998 5999999999998875 4788899999999999999987653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.26 E-value=0.00046 Score=68.77 Aligned_cols=140 Identities=11% Similarity=0.115 Sum_probs=83.9
Q ss_pred EEEEEE-eCCEEEEEEcCCC---cEEEEEecCCeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCe--E-EEeeccCCc
Q 003331 530 QVVVGC-YKGKIYFLDYLTG---DIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYR--C-VYKLPCGGS 601 (829)
Q Consensus 530 ~v~vg~-~dg~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~--~-~w~~~~~~~ 601 (829)
.||+.+ .++.|+.||+.+. +++..++.++.+ ....+++++..||++.. ++.|+.|+..++. . .........
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v-~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~ 83 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQV-QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 83 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCC-CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCE-eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence 466655 6889999997643 334455555554 34567778888987654 7889988876542 1 111111222
Q ss_pred ccccceeecCCCEEEEEec-CCeEEEEEccCCCceEEEee--ccCCcceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003331 602 IFGSPAIDEVHDVLYVAST-SGRLTAISVKALPFHTLWLH--ELEVPAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 602 ~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~g~~~w~~--~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
......+++++..++++.. ++.+..++... ....... ...........+.+++..++++.. ...+..++
T Consensus 84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~ 156 (333)
T d1ri6a_ 84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLED--GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFT 156 (333)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEET--TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CceEEEEcCCCCEEeecccCCCceeeecccc--ccceecccccCCCccceEEEeeecceeeeccccccceeeEEE
Confidence 2234567777888999875 55677777665 3322222 222222344566777777777764 34577777
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.23 E-value=0.00013 Score=72.82 Aligned_cols=200 Identities=9% Similarity=0.067 Sum_probs=110.6
Q ss_pred ceEEeeCCcEEEEE-EeCCEEEEEEcCCCcEEEEEe-cCCeeeeeeeeecCCCEEEEecc-----CCeEEEEEcCCCeEE
Q 003331 521 SAAVLADFSQVVVG-CYKGKIYFLDYLTGDIYWTFQ-TCGEVKCQPVVDAPRQLIWCGSH-----DHNLYALDFRNYRCV 593 (829)
Q Consensus 521 ~~~~~~~~~~v~vg-~~dg~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~i~~gs~-----~g~l~~~d~~tg~~~ 593 (829)
.+++..++. ||+. ..++.|+.||+.+++...... ..... ....+. .++.+|+... .+.+..++..++...
T Consensus 44 G~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p-~gla~~-~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 44 GLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANP-AAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp EEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSE-EEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred eCEECCCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCe-eEEEEC-CCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 345555544 4443 356789999977766544332 22222 223334 3456666542 346888887776655
Q ss_pred EeeccCC--cccccceeecCCCEEEEEecC-------CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-
Q 003331 594 YKLPCGG--SIFGSPAIDEVHDVLYVASTS-------GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL- 663 (829)
Q Consensus 594 w~~~~~~--~~~~~~~~~~~~~~l~v~t~~-------g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~- 663 (829)
....... .......++. ++.+|++... +.++.++++. +.+............+++.++++.+|+..
T Consensus 121 ~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 121 DIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp EEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred eeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEeccc---ceeEEEeeccceeeeeeeccccceEEEecc
Confidence 4433221 1122334454 5678888643 3477777663 22211111111113456666778888775
Q ss_pred eCCeEEEEc--CCCCEEEEeecCCc-----eeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEecCC
Q 003331 664 VDGHVVALD--SSGSIIWRCRTGGP-----IFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 664 ~~g~i~~~d--~~g~~~w~~~~~~~-----~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
..+.|+.++ .+|........... .....-+..+.+|+||++.. +|.|.+||+ +|+++.+...+.
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~ 268 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPG 268 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTT
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCC
Confidence 467898887 45544432211100 00111234567889999875 578999996 699988777654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.23 E-value=0.00023 Score=70.86 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=112.9
Q ss_pred CCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-----CCEEEEEEcCCCcEEEEEecC
Q 003331 484 DSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-----KGKIYFLDYLTGDIYWTFQTC 557 (829)
Q Consensus 484 d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-----dg~l~~~d~~tG~~~w~~~~~ 557 (829)
|.++.||+.. .+++|+.+|+.+++................+..++ .+|+... .+.++.++..++.........
T Consensus 48 D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 126 (319)
T d2dg1a1 48 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL 126 (319)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEEECSS
T ss_pred CCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCceeeeeccCC
Confidence 4556677765 67889999998776544332222212244555564 5666542 356888887777765544322
Q ss_pred C-eeeeeeeeecCCCEEEEeccC-------CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEE
Q 003331 558 G-EVKCQPVVDAPRQLIWCGSHD-------HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAIS 628 (829)
Q Consensus 558 ~-~~~~~~~~~~~~~~i~~gs~~-------g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~ 628 (829)
. .....-+..+.++.+|+++.. +.++.+++..+...... ........+.++.+++.+|++. ..+.|+.|+
T Consensus 127 ~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d 205 (319)
T d2dg1a1 127 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIA 205 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEecccCCceEEEE
Confidence 2 111222233356778988643 45888887654432211 1111223356777677888874 467899998
Q ss_pred ccCCCceEEEeec------cCC-cceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCC
Q 003331 629 VKALPFHTLWLHE------LEV-PAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGG 685 (829)
Q Consensus 629 ~~~~~g~~~w~~~------~~~-~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~ 685 (829)
.+.. |....... ... ......++. .+++||++.. ++.|.++|.+|+++.++..+.
T Consensus 206 ~~~~-g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~ 268 (319)
T d2dg1a1 206 LEDD-GVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPG 268 (319)
T ss_dssp ECTT-SSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTT
T ss_pred EcCC-CceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEEEeCCC
Confidence 7642 32222111 111 111223333 4667888865 578999998899987776543
|
| >d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Bacillus subtilis [TaxId: 1423]
Probab=98.20 E-value=4e-07 Score=68.22 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=55.3
Q ss_pred cHHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHH
Q 003331 288 SDLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIAL 350 (829)
Q Consensus 288 ~~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l 350 (829)
.++.+++++++++.|++ +.+.++.+|+ ++|.|||.+++|..++ +++...++.++|++.++.++
T Consensus 2 ~dv~~~v~~iia~~l~~~~~~i~~~~~~~~DlG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i 73 (74)
T d1f80d_ 2 ADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYI 73 (74)
T ss_dssp CHHHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCcCHHHcCCCccHHHhcCccHhHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHH
Confidence 46788999999999987 4799999998 5999999999998865 47888999999999999875
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.20 E-value=0.00014 Score=72.20 Aligned_cols=226 Identities=13% Similarity=0.126 Sum_probs=119.5
Q ss_pred CCCeEEEEecC--------CCcEEEEECCCCcEEEEEEcC-C---ceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEE
Q 003331 484 DSDIYLFVGSH--------SHKFICADAKRSSVLWEIKLE-G---RIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIY 551 (829)
Q Consensus 484 d~~~~l~igs~--------~g~l~~~d~~tg~~~w~~~~~-~---~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~ 551 (829)
|.++++|+.+. +|+|+.||+.+++........ . ..-....+..+++.+|++...+.++.+|..++...
T Consensus 26 d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~ 105 (314)
T d1pjxa_ 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEE 105 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEE
T ss_pred eCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEE
Confidence 46778888654 357999999988754322111 1 11224566677788999988888999996554432
Q ss_pred EEEe-cCCe-ee-eeeeeecCCCEEEEecc----------------CCeEEEEEcCCCeEEEeeccCCcccccceeecCC
Q 003331 552 WTFQ-TCGE-VK-CQPVVDAPRQLIWCGSH----------------DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH 612 (829)
Q Consensus 552 w~~~-~~~~-~~-~~~~~~~~~~~i~~gs~----------------~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~ 612 (829)
.... ..+. .. ..-+..+.++.+|++.. .|.+|.+++. |+....... -..-..+.+..++
T Consensus 106 ~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~-~~~pNGi~~~~d~ 183 (314)
T d1pjxa_ 106 IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA-FQFPNGIAVRHMN 183 (314)
T ss_dssp CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE-ESSEEEEEEEECT
T ss_pred EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCC-cceeeeeEECCCC
Confidence 2111 1111 11 11122334577888642 2457777754 333221110 0001122333322
Q ss_pred C----EEEEE-ecCCeEEEEEccCCCceEEEee---ccCCcc---eeeeeeeecCCEEEEEee-CCeEEEEc-CCCCEEE
Q 003331 613 D----VLYVA-STSGRLTAISVKALPFHTLWLH---ELEVPA---FASLCITSANRHVICCLV-DGHVVALD-SSGSIIW 679 (829)
Q Consensus 613 ~----~l~v~-t~~g~l~~~~~~~~~g~~~w~~---~~~~~~---~~s~~~~~~~~~l~~~~~-~g~i~~~d-~~g~~~w 679 (829)
+ .+|++ +..+.|++|+++. .|...+.. ...... ....++ ..++++|++.. .+.|.+|| ..|+.+-
T Consensus 184 d~~~~~lyv~d~~~~~i~~~d~~~-~g~~~~~~~~~~~~~~~~~~pdGiav-D~~GnlyVa~~~~g~I~~~dp~~g~~~~ 261 (314)
T d1pjxa_ 184 DGRPYQLIVAETPTKKLWSYDIKG-PAKIENKKVWGHIPGTHEGGADGMDF-DEDNNLLVANWGSSHIEVFGPDGGQPKM 261 (314)
T ss_dssp TSCEEEEEEEETTTTEEEEEEEEE-TTEEEEEEEEEECCCCSSCEEEEEEE-BTTCCEEEEEETTTEEEEECTTCBSCSE
T ss_pred CcceeEEEEEeecccceEEeeccC-ccccceeeEEEEccccccccceeeEE-ecCCcEEEEEcCCCEEEEEeCCCCEEEE
Confidence 2 57776 4567899988763 24443221 111111 112333 35677888875 57799999 6666554
Q ss_pred EeecCCceeecCcccccCC-CeEEEEe-eCCeEEEEeC
Q 003331 680 RCRTGGPIFAGPCTSFALP-SQVLICS-RNGSIYSFEQ 715 (829)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~-~~i~~~t-~~g~l~~~d~ 715 (829)
....+....+. +....+ +.||+.+ .+|.|+.++.
T Consensus 262 ~i~~p~~~~t~--~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 262 RIRCPFEKPSN--LHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EEECSSSCEEE--EEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EEECCCCCEEE--EEEeCCCCEEEEEECCCCcEEEEEC
Confidence 44443321111 112223 3688775 3567887774
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=0.0013 Score=65.29 Aligned_cols=143 Identities=15% Similarity=0.137 Sum_probs=89.4
Q ss_pred eEEEEec-CCCcEEEEECCCC---cEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEE----EEEecC
Q 003331 487 IYLFVGS-HSHKFICADAKRS---SVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIY----WTFQTC 557 (829)
Q Consensus 487 ~~l~igs-~~g~l~~~d~~tg---~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~----w~~~~~ 557 (829)
..||+.+ .++.|+.||+.+. +.+..+..++.+ ...++++||++||+++. ++.|..|+..++... ......
T Consensus 4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v-~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~ 82 (333)
T d1ri6a_ 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQV-QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 82 (333)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCC-CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCE-eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccC
Confidence 4566665 6888999997654 233344544443 46789999999988875 788988887654321 122222
Q ss_pred CeeeeeeeeecCCCEEEEecc-CCeEEEEEcCCCeEEEeecc--CCcccccceeecCCCEEEEEec-CCeEEEEEccC
Q 003331 558 GEVKCQPVVDAPRQLIWCGSH-DHNLYALDFRNYRCVYKLPC--GGSIFGSPAIDEVHDVLYVAST-SGRLTAISVKA 631 (829)
Q Consensus 558 ~~~~~~~~~~~~~~~i~~gs~-~g~l~~~d~~tg~~~w~~~~--~~~~~~~~~~~~~~~~l~v~t~-~g~l~~~~~~~ 631 (829)
.. .....++++++.+++++. ++.+..++............ .........++.++..++++.. ...+..++..+
T Consensus 83 ~~-p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~ 159 (333)
T d1ri6a_ 83 GS-LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159 (333)
T ss_dssp SC-CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred CC-ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEecc
Confidence 22 233557777888988875 56788887776665444332 2223334556666777777664 44577777665
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.07 E-value=0.00054 Score=67.53 Aligned_cols=219 Identities=11% Similarity=0.101 Sum_probs=113.8
Q ss_pred CCeEEEEecC-CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEc--CCCcEEEEEecCCee
Q 003331 485 SDIYLFVGSH-SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDY--LTGDIYWTFQTCGEV 560 (829)
Q Consensus 485 ~~~~l~igs~-~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~--~tG~~~w~~~~~~~~ 560 (829)
.+++||+... +++|+.+|+. |+........... ....+..++. +|+.. .++.++.++. .++...+........
T Consensus 37 pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~-~gla~~~dG~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (302)
T d2p4oa1 37 PDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKV-SGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 113 (302)
T ss_dssp TTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEE-EEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCc-ceEEEcCCCC-eEEEecCCceEEEEEecccccceeeccccCCcc
Confidence 5677887765 7889999975 6655545555443 3556777765 55544 4566666654 345555444433322
Q ss_pred eeeeeeecCCCEEEEe-ccCCeEEEEEcCCCeEEEeeccC--------CcccccceeecCCCEEEEE-ecCCeEEEEEcc
Q 003331 561 KCQPVVDAPRQLIWCG-SHDHNLYALDFRNYRCVYKLPCG--------GSIFGSPAIDEVHDVLYVA-STSGRLTAISVK 630 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~g-s~~g~l~~~d~~tg~~~w~~~~~--------~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~ 630 (829)
...-+..+.++.+|++ +.++.++.+|..++......... .......-+..+++.+|++ +..+.++.++..
T Consensus 114 ~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~ 193 (302)
T d2p4oa1 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD 193 (302)
T ss_dssp CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred ccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence 2222333456778876 45678999999887643322111 0000001111123556554 557788888876
Q ss_pred CCCceEEEe-eccCCcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecCcccc---c-CCCeEEEE
Q 003331 631 ALPFHTLWL-HELEVPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGPCTSF---A-LPSQVLIC 704 (829)
Q Consensus 631 ~~~g~~~w~-~~~~~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~---~-~~~~i~~~ 704 (829)
.. +...-. ...........++.. ++.+|++.. ++.|..++.+|+.........+......+.+ . ..+.||++
T Consensus 194 ~~-~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 194 ST-DKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp TT-SCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred cc-ccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence 52 211100 000111112334444 456787764 6779999977776544332221111111112 1 23578888
Q ss_pred eeCC
Q 003331 705 SRNG 708 (829)
Q Consensus 705 t~~g 708 (829)
+..|
T Consensus 272 t~~g 275 (302)
T d2p4oa1 272 TNGG 275 (302)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 7654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.96 E-value=0.0013 Score=64.65 Aligned_cols=198 Identities=10% Similarity=-0.028 Sum_probs=103.0
Q ss_pred ceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcC--CCeEEEeec
Q 003331 521 SAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFR--NYRCVYKLP 597 (829)
Q Consensus 521 ~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~--tg~~~w~~~ 597 (829)
.+++..+|..+++...++.|+++|+ +|+........+.+.. ..+.++ +.+|+.+ .++.++.++.. .+...+...
T Consensus 32 ~iAv~pdG~l~vt~~~~~~I~~i~p-~g~~~~~~~~~~~~~g-la~~~d-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (302)
T d2p4oa1 32 NLASAPDGTIFVTNHEVGEIVSITP-DGNQQIHATVEGKVSG-LAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLT 108 (302)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEECSSEEEE-EEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CEEECCCCCEEEEeCCCCEEEEEeC-CCCEEEEEcCCCCcce-EEEcCC-CCeEEEecCCceEEEEEecccccceeeccc
Confidence 4567777654444455789999994 5666555555554433 344544 4566654 45566666543 444444333
Q ss_pred cC-CcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceE-EEeeccC-------CcceeeeeeeecCCEEEEE-eeCC
Q 003331 598 CG-GSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHT-LWLHELE-------VPAFASLCITSANRHVICC-LVDG 666 (829)
Q Consensus 598 ~~-~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~-~w~~~~~-------~~~~~s~~~~~~~~~l~~~-~~~g 666 (829)
.. ........++. ++.+|++. .++.++.++..+ +.. +|..... ........+..+++.+|++ +..+
T Consensus 109 ~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~ 185 (302)
T d2p4oa1 109 LPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQ--PSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKM 185 (302)
T ss_dssp CTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTT--TEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTT
T ss_pred cCCccccceeEEcc-CCCEEeeccccccceeeeccC--CcceeEecCCccceeeccCcccccccccccCCceeeecCCCC
Confidence 32 22233344444 57788765 467888999886 432 2222110 0111122233345566655 4467
Q ss_pred eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEee-CCeEEEEeCCCCcEEEEEe
Q 003331 667 HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICSR-NGSIYSFEQESGNLLWEYS 725 (829)
Q Consensus 667 ~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t~-~g~l~~~d~~tG~~~w~~~ 725 (829)
.++.++ ....................+..+.+|.+|++.. ++.|..+++. |+......
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~ 245 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ 245 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEe
Confidence 777777 3221111100000000111234556889999864 6789999875 55544333
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=0.0004 Score=66.78 Aligned_cols=228 Identities=14% Similarity=0.135 Sum_probs=108.6
Q ss_pred ccceEEeeCCCeEEEEec--CCCcEEEEECCCCcEEEEEEcCCc-eeeceEEeeCCcEEEEEEeCCEEEEEE-cCCCcEE
Q 003331 476 ASPLVVLKDSDIYLFVGS--HSHKFICADAKRSSVLWEIKLEGR-IECSAAVLADFSQVVVGCYKGKIYFLD-YLTGDIY 551 (829)
Q Consensus 476 ~sp~v~~~d~~~~l~igs--~~g~l~~~d~~tg~~~w~~~~~~~-~~~~~~~~~~~~~v~vg~~dg~l~~~d-~~tG~~~ 551 (829)
.+|.=+.-|.++.+|+.+ ..+.+..++..+....+ ...... .....++..+ +.+|+....+.+..+. ..++..+
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~~-g~i~v~d~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDGA-GTVYVTDFNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECTT-CCEEEEETTTEEEEECTTCSCCEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-eccCCccCceEEEEcCC-CCEEEeeeeeceeeeeeeccceee
Confidence 355544446778888864 34667777755433322 222211 1123455555 4678877776666555 3344444
Q ss_pred EEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC-cccccceeecCCCEEEEE-ecCCeEEEEE
Q 003331 552 WTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG-SIFGSPAIDEVHDVLYVA-STSGRLTAIS 628 (829)
Q Consensus 552 w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~-~~~~~~~~~~~~~~l~v~-t~~g~l~~~~ 628 (829)
+........ ...+++. .+.+|+.. .+..++.++.... ..+.....+ .....++++.++ .+|++ ..++.++.++
T Consensus 92 ~~~~~~~~p-~~iavd~-~g~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~i~~~~~g-~~~v~~~~~~~i~~~d 167 (260)
T d1rwia_ 92 LPFDGLNYP-EGLAVDT-QGAVYVADRGNNRVVKLAAGSK-TQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLE 167 (260)
T ss_dssp CCCCSCCSE-EEEEECT-TCCEEEEEGGGTEEEEECTTCS-SCEECCCCSCCSCCEEEECTTC-CEEEEEGGGTEEEEEC
T ss_pred eeeeeeeec-ccccccc-cceeEeeccccccccccccccc-eeeeeeecccCCcceeeecCCC-CEeeeccccccccccc
Confidence 332211222 2223333 45566653 3455777775443 334333222 222344555544 45555 5567789998
Q ss_pred ccCCCceEEEeeccC-CcceeeeeeeecCCEEEEEee-CCeEEEEcCCCCEEEEeecCCceeecC-cccccCCCeEEEEe
Q 003331 629 VKALPFHTLWLHELE-VPAFASLCITSANRHVICCLV-DGHVVALDSSGSIIWRCRTGGPIFAGP-CTSFALPSQVLICS 705 (829)
Q Consensus 629 ~~~~~g~~~w~~~~~-~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d~~g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t 705 (829)
.+. ...+..... .......++.. ++.+|++.. ++.|+.++.++......... . +..| .+..+.++.||++.
T Consensus 168 ~~~---~~~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~-~-~~~P~~i~~d~~g~l~vad 241 (260)
T d1rwia_ 168 AES---NNQVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFT-G-LNTPLAVAVDSDRTVYVAD 241 (260)
T ss_dssp TTT---CCEEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCC-S-CCCEEEEEECTTCCEEEEE
T ss_pred ccc---ceeeeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccC-C-CCCeEEEEEeCCCCEEEEE
Confidence 774 333332211 11112334433 456777665 56788888444433222211 1 1222 12334456677763
Q ss_pred -eCCeEEEEeC
Q 003331 706 -RNGSIYSFEQ 715 (829)
Q Consensus 706 -~~g~l~~~d~ 715 (829)
.++.|..++.
T Consensus 242 ~~~~rI~~i~~ 252 (260)
T d1rwia_ 242 RGNDRVVKLTS 252 (260)
T ss_dssp GGGTEEEEECC
T ss_pred CCCCEEEEEeC
Confidence 3445665553
|
| >d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl carrier protein-like superfamily: ACP-like family: Acyl-carrier protein (ACP) domain: Acyl carrier protein species: Escherichia coli [TaxId: 562]
Probab=97.80 E-value=1.2e-05 Score=60.41 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcccCc--ceeccCCCcc-ccCCChHHHHHHHHHc------CCcchhhhcCCCHHHHHHHHHhhc
Q 003331 289 DLLQVIRKAFGHALMV--EEVLHHDNFF-TMGGNSIAAAHVAHNL------GIDMRLIYNFPTPSKLEIALLEKK 354 (829)
Q Consensus 289 ~~~~~l~~~~~~~l~~--~~i~~~~~Ff-~lGgdSl~a~~l~~~l------~~~~~~~~~~pt~~~la~~l~~~~ 354 (829)
+++++++++.++.+++ ..+.++.+|. ++|.|||..+.|...+ .++...+...+|+..+..++.++.
T Consensus 2 ~I~~~v~~iia~~l~i~~~~i~~~~~l~~dLg~DSl~~~el~~~iE~~f~i~i~~~~~~~~~Tv~dlv~~i~~~~ 76 (77)
T d1t8ka_ 2 TIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQ 76 (77)
T ss_dssp CHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHCCCHHHcCCCCcchhccccchhHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHcc
Confidence 4678899999999987 5689999998 5999999999998765 477788999999999999998764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.49 E-value=0.0047 Score=58.88 Aligned_cols=186 Identities=14% Similarity=0.114 Sum_probs=88.4
Q ss_pred eEEeeCCcEEEEEEe--CCEEEEEEcCCCcEEEEEecCCe-eeeeeeeecCCCEEEEeccCCeEEEEE-cCCCeEEEeec
Q 003331 522 AAVLADFSQVVVGCY--KGKIYFLDYLTGDIYWTFQTCGE-VKCQPVVDAPRQLIWCGSHDHNLYALD-FRNYRCVYKLP 597 (829)
Q Consensus 522 ~~~~~~~~~v~vg~~--dg~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~i~~gs~~g~l~~~d-~~tg~~~w~~~ 597 (829)
.++..+ +.+|+.+. .+.+..++..+....+ ....+. ......++. ++.||++...+.+..++ ..++..++...
T Consensus 19 vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~~~ 95 (260)
T d1rwia_ 19 VAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLPFD 95 (260)
T ss_dssp EEECTT-CCEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred EEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEE-eccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeeeee
Confidence 355544 45666532 3567777644333322 222211 112223443 45677776665555444 34444443322
Q ss_pred cCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceEEEeeccCC-cceeeeeeeecCCEEEEE-eeCCeEEEEcCC
Q 003331 598 CGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHTLWLHELEV-PAFASLCITSANRHVICC-LVDGHVVALDSS 674 (829)
Q Consensus 598 ~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~~w~~~~~~-~~~~s~~~~~~~~~l~~~-~~~g~i~~~d~~ 674 (829)
... .....+++. ++.+|+.. .+..++.++... ...+...... .......+..++. +|++ ..++.++.++.+
T Consensus 96 ~~~-~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~ 169 (260)
T d1rwia_ 96 GLN-YPEGLAVDT-QGAVYVADRGNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAE 169 (260)
T ss_dssp SCC-SEEEEEECT-TCCEEEEEGGGTEEEEECTTC---SSCEECCCCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTT
T ss_pred eee-ecccccccc-cceeEeecccccccccccccc---ceeeeeeecccCCcceeeecCCCC-Eeeeccccccccccccc
Confidence 111 112344555 34566654 345566666553 3333332221 1123344544444 5555 456779999954
Q ss_pred CCEEEEeecCCceeecC-cccccCCCeEEEEee-CCeEEEEeCCCC
Q 003331 675 GSIIWRCRTGGPIFAGP-CTSFALPSQVLICSR-NGSIYSFEQESG 718 (829)
Q Consensus 675 g~~~w~~~~~~~~~~~~-~~~~~~~~~i~~~t~-~g~l~~~d~~tG 718 (829)
+...+...... +..| .+..+.++.||++.. ++.|+.++...+
T Consensus 170 ~~~~~~~~~~~--~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 170 SNNQVVLPFTD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp TCCEEECCCSS--CCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred cceeeeeeccc--cCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 54444432211 1122 123445778998865 567898986644
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.33 E-value=0.07 Score=50.38 Aligned_cols=229 Identities=12% Similarity=0.043 Sum_probs=111.8
Q ss_pred EEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEE-eCCEEEEEEcCCCc----EEEEEecCCeeeee
Q 003331 489 LFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGC-YKGKIYFLDYLTGD----IYWTFQTCGEVKCQ 563 (829)
Q Consensus 489 l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~-~dg~l~~~d~~tG~----~~w~~~~~~~~~~~ 563 (829)
|+++.. ..|..+|+.+.+..--.. +........+....+.||... ..+.|+..+..... ..-...........
T Consensus 4 Ll~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 4 LFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 444443 348888887655332121 111111233433455666553 34556665543211 11111111111123
Q ss_pred eeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEec--CCeEEEEEccCCCceEEEee
Q 003331 564 PVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST--SGRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 564 ~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~--~g~l~~~~~~~~~g~~~w~~ 640 (829)
.+++..++.||+.. ..+.|...+...................+++++..+.+|+... .+.|+..+.+...-+.+...
T Consensus 82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~ 161 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 161 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence 44554567777764 4467888887655443333332223345566766788888653 35688888774212233322
Q ss_pred ccCCcceeeeeeeecCCEEEEEe-eCCeEEEEcCCCCEEEEeecCCceeecCcccccCCCeEEEEe-eCCeEEEEeCCCC
Q 003331 641 ELEVPAFASLCITSANRHVICCL-VDGHVVALDSSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESG 718 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG 718 (829)
.... ....++...++++|++. ..+.|..++.+|.-.-...........|.-....++.||... .++.|+.+++.+|
T Consensus 162 ~~~~--p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 162 NIQW--PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp SCSC--EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred ccce--eeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCC
Confidence 2222 23455655677777764 457888888444321111111111111211112256777764 5678889988887
Q ss_pred cEE
Q 003331 719 NLL 721 (829)
Q Consensus 719 ~~~ 721 (829)
+..
T Consensus 240 ~~~ 242 (266)
T d1ijqa1 240 SDV 242 (266)
T ss_dssp CCC
T ss_pred cce
Confidence 654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.18 E-value=0.022 Score=57.75 Aligned_cols=131 Identities=7% Similarity=-0.043 Sum_probs=84.6
Q ss_pred EEecCCCcEEEEECCCCcEEEEEEcCC------------------------------ceeeceEEeeCCcEEEEEE-eCC
Q 003331 490 FVGSHSHKFICADAKRSSVLWEIKLEG------------------------------RIECSAAVLADFSQVVVGC-YKG 538 (829)
Q Consensus 490 ~igs~~g~l~~~d~~tg~~~w~~~~~~------------------------------~~~~~~~~~~~~~~v~vg~-~dg 538 (829)
+.|.++|.|..+|+.+++.+.+...-. ...+....+.||+++|+.. .++
T Consensus 15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~ 94 (441)
T d1qnia2 15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT 94 (441)
T ss_dssp EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence 345589999999999999998764311 0011112346788898886 467
Q ss_pred EEEEEEcCCCcEEEEEecCC-eeeeeeeeecCCCEEEEe--ccC-----------------CeEEEEEcCCCeEEEeecc
Q 003331 539 KIYFLDYLTGDIYWTFQTCG-EVKCQPVVDAPRQLIWCG--SHD-----------------HNLYALDFRNYRCVYKLPC 598 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~~~~~i~~g--s~~-----------------g~l~~~d~~tg~~~w~~~~ 598 (829)
.|-++|+.|+++.-....+. .-.....+..+++.+|+. +.+ ..+.++|..+.+..|+...
T Consensus 95 rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v 174 (441)
T d1qnia2 95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIV 174 (441)
T ss_dssp EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEE
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEec
Confidence 89999999999877665532 222223444445544443 221 1346789999999999877
Q ss_pred CCcccccceeecCCCEEEEEecC
Q 003331 599 GGSIFGSPAIDEVHDVLYVASTS 621 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~~ 621 (829)
++.. ....++.+++.+|+++.+
T Consensus 175 ~~~p-~~v~~spdGk~a~vt~~n 196 (441)
T d1qnia2 175 DGNL-DNTDADYTGKYATSTCYN 196 (441)
T ss_dssp SSCC-CCEEECSSSSEEEEEESC
T ss_pred CCCc-cceEECCCCCEEEEEecC
Confidence 6543 344556667888887644
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.07 E-value=0.0026 Score=64.80 Aligned_cols=219 Identities=7% Similarity=-0.030 Sum_probs=118.6
Q ss_pred EEEEeCCEEEEEEcCCCcEEEEEecCC------------------------------eeeeeeeeecCCCEEEEec-cCC
Q 003331 532 VVGCYKGKIYFLDYLTGDIYWTFQTCG------------------------------EVKCQPVVDAPRQLIWCGS-HDH 580 (829)
Q Consensus 532 ~vg~~dg~l~~~d~~tG~~~w~~~~~~------------------------------~~~~~~~~~~~~~~i~~gs-~~g 580 (829)
+.|..+|.|..||..+++++.++..-. ...+......++..+|+.. .++
T Consensus 15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~ 94 (441)
T d1qnia2 15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT 94 (441)
T ss_dssp EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence 345567888899988888888753210 0011111123456788764 567
Q ss_pred eEEEEEcCCCeEEEeeccC-CcccccceeecCCCEEEEEe--cC-----------------CeEEEEEccCCCceEEEee
Q 003331 581 NLYALDFRNYRCVYKLPCG-GSIFGSPAIDEVHDVLYVAS--TS-----------------GRLTAISVKALPFHTLWLH 640 (829)
Q Consensus 581 ~l~~~d~~tg~~~w~~~~~-~~~~~~~~~~~~~~~l~v~t--~~-----------------g~l~~~~~~~~~g~~~w~~ 640 (829)
.|..+|..++++.-..... +...-...+..++.++|+.. .+ ..+.++|..+ .+..|+.
T Consensus 95 rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t--~~v~~qI 172 (441)
T d1qnia2 95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET--MDVAWQV 172 (441)
T ss_dssp EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT--CSEEEEE
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc--ceeeEEE
Confidence 8999999999887765543 11222234444456555543 21 1234577776 8888888
Q ss_pred ccCCcceeeeeeeecCCEEEEEeeCC-eEEEEc-CCCCEEEEeecCCceeecCcc-cccCCC-eEEEEeeCCeEEEEeCC
Q 003331 641 ELEVPAFASLCITSANRHVICCLVDG-HVVALD-SSGSIIWRCRTGGPIFAGPCT-SFALPS-QVLICSRNGSIYSFEQE 716 (829)
Q Consensus 641 ~~~~~~~~s~~~~~~~~~l~~~~~~g-~i~~~d-~~g~~~w~~~~~~~~~~~~~~-~~~~~~-~i~~~t~~g~l~~~d~~ 716 (829)
...... ....+.++++.+|+.+.+. .+..++ .+.+....... ...+.. ....+| .++++ .++.+...+..
T Consensus 173 ~v~~~p-~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v----~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~ 246 (441)
T d1qnia2 173 IVDGNL-DNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVV----FNVERIAAAVKAGNFKTIG-DSKVPVVDGRG 246 (441)
T ss_dssp EESSCC-CCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEE----EEHHHHHHHHHTTCCBCCT-TCCCCEEECSS
T ss_pred ecCCCc-cceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEe----CCccceEEEecCCCEEEeC-CCCcEEEEccc
Confidence 765542 5567778889999887653 344445 34333322211 111110 111122 33332 24444444444
Q ss_pred CCcEEEEEecCCccccccccccccccccccccCCCcEEEEE-ccCCcEEEEEeec
Q 003331 717 SGNLLWEYSVGDPITASAYIDEHLQLKLESCLSIDRLVCIC-TSSGSIHILRVNL 770 (829)
Q Consensus 717 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~G~l~~~d~~~ 770 (829)
+.++......+....... ..+++.++|++ ..++.+.+||..+
T Consensus 247 ~~~v~~~IPvgksPhGv~------------vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 247 ESEFTRYIPVPKNPHGLN------------TSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp SCSSEEEECCBSSCCCEE------------ECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CCceEEEEeCCCCccCce------------ECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 445555554433221111 12347777764 5688999999864
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.03 E-value=0.073 Score=55.18 Aligned_cols=105 Identities=9% Similarity=0.006 Sum_probs=70.9
Q ss_pred eEEEEecCCCcEEEEECCCCcEEEEEEcC-----CceeeceEEeeCCcEEEEEEe---------CCEEEEEEcCCCcEEE
Q 003331 487 IYLFVGSHSHKFICADAKRSSVLWEIKLE-----GRIECSAAVLADFSQVVVGCY---------KGKIYFLDYLTGDIYW 552 (829)
Q Consensus 487 ~~l~igs~~g~l~~~d~~tg~~~w~~~~~-----~~~~~~~~~~~~~~~v~vg~~---------dg~l~~~d~~tG~~~w 552 (829)
.++|. .++.++.+|+.+|+..-.+... .....+..+++|+..|.+++. ++.++.||.++|+..
T Consensus 29 ~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~- 105 (470)
T d2bgra1 29 EYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI- 105 (470)
T ss_dssp EEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-
T ss_pred EEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-
Confidence 34443 3567999999999876433322 122346678999998887743 467899999988753
Q ss_pred EEecCCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEe
Q 003331 553 TFQTCGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYK 595 (829)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~ 595 (829)
...........+.+++++..|.+. .++.++.++..+|+....
T Consensus 106 ~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~ 147 (470)
T d2bgra1 106 TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI 147 (470)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC
T ss_pred ccccCCccccccccccCcceeeEe-ecccceEEECCCCceeee
Confidence 333333445567788777777665 467899999988876543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.03 E-value=5.1e-05 Score=72.95 Aligned_cols=76 Identities=16% Similarity=0.012 Sum_probs=58.9
Q ss_pred cccccccccc--CccccchhhhhhcccccCCccccCCcccccCCCCCccCC-------------------CCCC-eeeec
Q 003331 372 EEDKEHQFHS--GYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWNLS-------------------SVPM-SCSFS 429 (829)
Q Consensus 372 ~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~-------------------~~~~-~~s~~ 429 (829)
..++++|+|+ +.|+...|..|++.|..++++|+++.+++... ++.+.+ ||.| |||+|
T Consensus 41 ~~~~l~c~~~~~~gg~~~~y~~La~~L~~~~~V~al~~pG~~~~-e~~~~s~~~~a~~~~~~i~~~~~~~P~~L~GhS~G 119 (255)
T d1mo2a_ 41 GEVTVICCAGTAAISGPHEFTRLAGALRGIAPVRAVPQPGYEEG-EPLPSSMAAVAAVQADAVIRTQGDKPFVVAGHSAG 119 (255)
T ss_dssp CSSEEEEECCCSSSCSGGGGHHHHHHHTTTCCEEEECCTTSSTT-CCEESSHHHHHHHHHHHHHHTTSSSCEEEEECSTT
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHhcCCCceEEEEeCCCcCCC-CCCCCCHHHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 4556999998 67889999999999999999999999986443 344444 8999 99999
Q ss_pred ccccee--ecccccccccccc
Q 003331 430 RCNKVM--HEEKIRGNDLCGV 448 (829)
Q Consensus 430 ~~~~~~--~~~~~~~~~~~~~ 448 (829)
+.++++ .+++.++.++...
T Consensus 120 g~vA~e~A~~l~~~g~~v~~l 140 (255)
T d1mo2a_ 120 ALMAYALATELLDRGHPPRGV 140 (255)
T ss_dssp HHHHHHHHHHHHHHTCCCSEE
T ss_pred HHHHHHHHHhhHhcCCCccEE
Confidence 999988 4444455555433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.92 E-value=0.17 Score=47.40 Aligned_cols=195 Identities=10% Similarity=-0.015 Sum_probs=103.8
Q ss_pred EEeeCCcEEEEEE-eCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEec-cCCeEEEEEcCCCeEEEeeccCC
Q 003331 523 AVLADFSQVVVGC-YKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGS-HDHNLYALDFRNYRCVYKLPCGG 600 (829)
Q Consensus 523 ~~~~~~~~v~vg~-~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs-~~g~l~~~d~~tg~~~w~~~~~~ 600 (829)
.+....+.||... .++.|+..+..++...-....+-......+++...+.||+.. ..+.|...++......-......
T Consensus 42 d~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l 121 (263)
T d1npea_ 42 AFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL 121 (263)
T ss_dssp EEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred EEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccc
Confidence 3444456676654 356788888654433222222211223344554567777654 45678888866443222222221
Q ss_pred cccccceeecCCCEEEEEecC---CeEEEEEccCCCceEEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEcCCCC
Q 003331 601 SIFGSPAIDEVHDVLYVASTS---GRLTAISVKALPFHTLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALDSSGS 676 (829)
Q Consensus 601 ~~~~~~~~~~~~~~l~v~t~~---g~l~~~~~~~~~g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d~~g~ 676 (829)
......++++..+.+|....+ ..|+..+.+......+.......| ...++...++++|+.. ..+.|...+.+|.
T Consensus 122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P--~glaiD~~~~~lYw~d~~~~~I~~~~~~g~ 199 (263)
T d1npea_ 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP--NGLTFDAFSSQLCWVDAGTHRAECLNPAQP 199 (263)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCE--EEEEEETTTTEEEEEETTTTEEEEEETTEE
T ss_pred cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeeccccc--ceEEEeecCcEEEEEeCCCCEEEEEECCCC
Confidence 223455677778888876543 347777776421222222222222 3445555677887764 4567888884454
Q ss_pred EEEEeecC-CceeecCcccccCCCeEEEEe-eCCeEEEEeCCCCcEEEE
Q 003331 677 IIWRCRTG-GPIFAGPCTSFALPSQVLICS-RNGSIYSFEQESGNLLWE 723 (829)
Q Consensus 677 ~~w~~~~~-~~~~~~~~~~~~~~~~i~~~t-~~g~l~~~d~~tG~~~w~ 723 (829)
..-..-.+ ...++ +.. .++.||... .++.|+.+|..+|+..-.
T Consensus 200 ~~~~v~~~~~~P~~---lav-~~~~lYwtd~~~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 200 GRRKVLEGLQYPFA---VTS-YGKNLYYTDWKTNSVIAMDLAISKEMDT 244 (263)
T ss_dssp EEEEEEECCCSEEE---EEE-ETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CeEEEECCCCCcEE---EEE-ECCEEEEEECCCCEEEEEECCCCccceE
Confidence 33222111 11122 112 367788775 567899999998887643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.30 E-value=0.12 Score=48.79 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=63.1
Q ss_pred CeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-C-----CEEEEEEcCCCcEEEEEecCC-
Q 003331 486 DIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-K-----GKIYFLDYLTGDIYWTFQTCG- 558 (829)
Q Consensus 486 ~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-d-----g~l~~~d~~tG~~~w~~~~~~- 558 (829)
+..+|+. ++.|+.+|+.+|+... +.........+.+++||+.|+.... + ..|+.++..+|+..-......
T Consensus 13 ~~v~f~~--~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~ 89 (281)
T d1k32a2 13 DRIIFVC--CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGK 89 (281)
T ss_dssp TEEEEEE--TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEE
T ss_pred CEEEEEe--CCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCC
Confidence 3444543 3569999999988753 4444455668899999987765433 2 259999988887653211111
Q ss_pred -----eeeeeeeeecCCCEEEEecc------CCeEEEEEcCCCeEEE
Q 003331 559 -----EVKCQPVVDAPRQLIWCGSH------DHNLYALDFRNYRCVY 594 (829)
Q Consensus 559 -----~~~~~~~~~~~~~~i~~gs~------~g~l~~~d~~tg~~~w 594 (829)
.....+.+.+++..|++... ...++.++...+....
T Consensus 90 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (281)
T d1k32a2 90 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP 136 (281)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE
T ss_pred ccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE
Confidence 11233445556666666432 1235666666665543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.17 E-value=0.51 Score=43.95 Aligned_cols=192 Identities=9% Similarity=-0.093 Sum_probs=101.9
Q ss_pred eCCCeEEEEec-CCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCCee
Q 003331 483 KDSDIYLFVGS-HSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCGEV 560 (829)
Q Consensus 483 ~d~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~~~ 560 (829)
+-.++.||... .++.|+..+...+...-............++..-++.||.... .+.|...++......-.....-..
T Consensus 44 D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~ 123 (263)
T d1npea_ 44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123 (263)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS
T ss_pred EeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccC
Confidence 33567777765 4567888887654332112211111123344434667876654 568888886543332222222122
Q ss_pred eeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEEe-cCCeEEEEEccCCCceE
Q 003331 561 KCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAS-TSGRLTAISVKALPFHT 636 (829)
Q Consensus 561 ~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t-~~g~l~~~~~~~~~g~~ 636 (829)
....++++..+.+|....+ ..|+..+.......-....+-......+++..+++||+.. ..+.|...+.+. ..
T Consensus 124 p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g---~~ 200 (263)
T d1npea_ 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---PG 200 (263)
T ss_dssp EEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---EE
T ss_pred CcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCC---CC
Confidence 3345567778888876433 3487777643321111111111223456776678887764 467898998874 32
Q ss_pred EEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCEEE
Q 003331 637 LWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSIIW 679 (829)
Q Consensus 637 ~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~~w 679 (829)
.-..-...+...+.+ ..++.+|+.. .++.|+.+| .+|+..-
T Consensus 201 ~~~v~~~~~~P~~la--v~~~~lYwtd~~~~~I~~~~~~~g~~~~ 243 (263)
T d1npea_ 201 RRKVLEGLQYPFAVT--SYGKNLYYTDWKTNSVIAMDLAISKEMD 243 (263)
T ss_dssp EEEEEECCCSEEEEE--EETTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred eEEEECCCCCcEEEE--EECCEEEEEECCCCEEEEEECCCCccce
Confidence 222111111112333 3467787775 457888888 6776553
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.55 Score=43.83 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=95.8
Q ss_pred CCeEEEEec-CCCcEEEEECCCCcE----EEEEEcCCceeeceEEeeCCcEEEEEEe-CCEEEEEEcCCCcEEEEEecCC
Q 003331 485 SDIYLFVGS-HSHKFICADAKRSSV----LWEIKLEGRIECSAAVLADFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTCG 558 (829)
Q Consensus 485 ~~~~l~igs-~~g~l~~~d~~tg~~----~w~~~~~~~~~~~~~~~~~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~~ 558 (829)
.++.||... ..+.|+..+...... .-............++..-++.||.... .+.|+..++.............
T Consensus 40 ~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~ 119 (266)
T d1ijqa1 40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 119 (266)
T ss_dssp TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC
Confidence 456666654 345676666542111 1111111111112344434667887654 4678888865444433333332
Q ss_pred eeeeeeeeecCCCEEEEecc--CCeEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCCeEEEEEccCCCce
Q 003331 559 EVKCQPVVDAPRQLIWCGSH--DHNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSGRLTAISVKALPFH 635 (829)
Q Consensus 559 ~~~~~~~~~~~~~~i~~gs~--~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g~l~~~~~~~~~g~ 635 (829)
......++++..+.+|.... .+.|+..+.......-............+++..+++||+. +..+.|..++++...-.
T Consensus 120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (266)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence 33344566666788887643 3568888865432221111111222456677667888776 44678899998741111
Q ss_pred EEEeeccCCcceeeeeeeecCCEEEEEe-eCCeEEEEc-CCCCE
Q 003331 636 TLWLHELEVPAFASLCITSANRHVICCL-VDGHVVALD-SSGSI 677 (829)
Q Consensus 636 ~~w~~~~~~~~~~s~~~~~~~~~l~~~~-~~g~i~~~d-~~g~~ 677 (829)
.+-......+ ....+...++.+|+.. .++.|+.++ .+|+.
T Consensus 200 ~~~~~~~~~~--~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~ 241 (266)
T d1ijqa1 200 TILEDEKRLA--HPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241 (266)
T ss_dssp EEEECTTTTS--SEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred EEEeCCCccc--ccEEEEEECCEEEEEECCCCeEEEEECCCCcc
Confidence 2211111111 1112334467777765 457788887 66643
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.09 E-value=0.0005 Score=66.93 Aligned_cols=63 Identities=6% Similarity=-0.170 Sum_probs=50.3
Q ss_pred ccccccccc--CccccchhhhhhcccccCCccccCCcccccCCCCCcc----CC-------------------CCCC-ee
Q 003331 373 EDKEHQFHS--GYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPWN----LS-------------------SVPM-SC 426 (829)
Q Consensus 373 ~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~----~~-------------------~~~~-~~ 426 (829)
.++++|+|+ +.|++..|..|++.|..++++|+++.+++...+.+.. .+ ||.| ||
T Consensus 60 ~~~l~c~~~~~~~g~~~~y~~la~~L~~~~~V~al~~pG~~~~~~~~~~~~~~s~~~~a~~~~~~i~~~~~~~P~vL~Gh 139 (283)
T d2h7xa1 60 RAVLVGCTGTAANGGPHEFLRLSTSFQEERDFLAVPLPGYGTGTGTGTALLPADLDTALDAQARAILRAAGDAPVVLLGH 139 (283)
T ss_dssp CCEEEEECCCCTTCSTTTTHHHHHTTTTTCCEEEECCTTCCBC---CBCCEESSHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred CceEEEeCCCCCCCCHHHHHHHHHhcCCCceEEEEeCCCCCCCCCCccccccCCHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 356999998 5688999999999999999999999998744332221 22 8999 99
Q ss_pred eecccccee
Q 003331 427 SFSRCNKVM 435 (829)
Q Consensus 427 s~~~~~~~~ 435 (829)
|+||.++++
T Consensus 140 S~GG~vA~e 148 (283)
T d2h7xa1 140 SGGALLAHE 148 (283)
T ss_dssp THHHHHHHH
T ss_pred ccchHHHHH
Confidence 999999877
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.92 E-value=0.3 Score=50.20 Aligned_cols=105 Identities=9% Similarity=-0.035 Sum_probs=68.7
Q ss_pred EEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecC-----CeeeeeeeeecCCCEEEEec---------cCCeEEEEEcC
Q 003331 523 AVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTC-----GEVKCQPVVDAPRQLIWCGS---------HDHNLYALDFR 588 (829)
Q Consensus 523 ~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~~~~~i~~gs---------~~g~l~~~d~~ 588 (829)
...+++.++|. .++.++.+|+.+|+..-.+... ......+.+++++..|++++ .++.++.||.+
T Consensus 23 ~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~ 100 (470)
T d2bgra1 23 RWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (470)
T ss_dssp EECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence 34445555543 4778999999999876444322 12234556777888887764 34678999999
Q ss_pred CCeEEEeeccCCcccccceeecCCCEEEEEecCCeEEEEEccC
Q 003331 589 NYRCVYKLPCGGSIFGSPAIDEVHDVLYVASTSGRLTAISVKA 631 (829)
Q Consensus 589 tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~~g~l~~~~~~~ 631 (829)
+|+.. .+.........+.+++++..++.. .++.++.++..+
T Consensus 101 ~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~ 141 (470)
T d2bgra1 101 KRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN 141 (470)
T ss_dssp TTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT
T ss_pred CCccc-ccccCCccccccccccCcceeeEe-ecccceEEECCC
Confidence 98753 343334444566777777776664 466799998776
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.64 Score=43.08 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=45.2
Q ss_pred EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC---CeEEEEEcCCCeEEEeeccCCcccccceeecCCCEE
Q 003331 539 KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD---HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVL 615 (829)
Q Consensus 539 ~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~---g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l 615 (829)
.||..|.. |.-............+|.+++++..|.+.+.. ..++..+..++.........+. ...+..++++..+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC-EEEEEECTTSSEE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecc-cccceecCCCCee
Confidence 57777744 43333332233444678999888888765443 3588888887776554433332 2334455555655
Q ss_pred EEEe
Q 003331 616 YVAS 619 (829)
Q Consensus 616 ~v~t 619 (829)
+...
T Consensus 98 ~~~~ 101 (269)
T d2hqsa1 98 AFAL 101 (269)
T ss_dssp EEEE
T ss_pred eEee
Confidence 5433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.72 Score=42.73 Aligned_cols=215 Identities=11% Similarity=0.048 Sum_probs=102.3
Q ss_pred cEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCC---EEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEE
Q 003331 497 KFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKG---KIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLI 573 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg---~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i 573 (829)
.|+..|...+...--.... ....++.+++||+.|+...... .++.++..++.........+. ...+.+.+++..+
T Consensus 20 ~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC-EEEEEECTTSSEE
T ss_pred EEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecc-cccceecCCCCee
Confidence 4666665433333223333 3345899999999987765433 588889887776654433333 3344556666655
Q ss_pred EEecc-CC--eEEEEEcCCCeEEEeeccCCcccccceeecCCCEEEEE-ecCC--eEEEEEccCCCceEEEeeccCCcce
Q 003331 574 WCGSH-DH--NLYALDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVA-STSG--RLTAISVKALPFHTLWLHELEVPAF 647 (829)
Q Consensus 574 ~~gs~-~g--~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~-t~~g--~l~~~~~~~~~g~~~w~~~~~~~~~ 647 (829)
+.... .+ .+..+........+...... ....+.....++.+++. ..+| .++..+.+. +... .........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~-~~~~~~~~~ 173 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQ-RITWEGSQN 173 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECCCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCE-ECCCSSSEE
T ss_pred eEeeecCCccceeecccccccceeeeeccc-cccccccccccccceecccccCCceEeeeeccc--ccce-eeecccccc
Confidence 55332 22 23333333333333322222 22233333334444443 3333 466666665 3221 111122223
Q ss_pred eeeeeeecCCEEEEEeeCC---eEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe-eC--CeEEEEeCCCCcE
Q 003331 648 ASLCITSANRHVICCLVDG---HVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS-RN--GSIYSFEQESGNL 720 (829)
Q Consensus 648 ~s~~~~~~~~~l~~~~~~g---~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t-~~--g~l~~~d~~tG~~ 720 (829)
..+...+++..++..+.++ .++.++ ..+....... .... ..|..+.+ +..|++.+ .+ ..|+.++.+.+..
T Consensus 174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~-~~p~~SPD-G~~i~f~s~~~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TFLD-ETPSLAPN-GTMVIYSSSQGMGSVLNLVSTDGRFK 250 (269)
T ss_dssp EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SSSC-EEEEECTT-SSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred cccccccccceeEEEeecCCceeeeEeecccccceEeec-Cccc-cceEECCC-CCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 4556677777777666544 344455 4444322221 1111 12222222 23444433 32 3577778765543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=95.82 E-value=1 Score=44.29 Aligned_cols=183 Identities=10% Similarity=0.002 Sum_probs=90.5
Q ss_pred eEEEEecC--CCcE--EEEECCCCcEEEE--EEcCCc-eeeceEEeeCCcEEEEEEeCCEEE--EEEcCCCcEEE-EEec
Q 003331 487 IYLFVGSH--SHKF--ICADAKRSSVLWE--IKLEGR-IECSAAVLADFSQVVVGCYKGKIY--FLDYLTGDIYW-TFQT 556 (829)
Q Consensus 487 ~~l~igs~--~g~l--~~~d~~tg~~~w~--~~~~~~-~~~~~~~~~~~~~v~vg~~dg~l~--~~d~~tG~~~w-~~~~ 556 (829)
..|++||. .+.| +.||.+++++.-. ...... ..+..+++.+++.+|+.+. +.+. .+|..++...- ....
T Consensus 3 ~~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~ 81 (365)
T d1jofa_ 3 HHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI 81 (365)
T ss_dssp EEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC
T ss_pred eEEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC
Confidence 46899975 4556 4567777775321 222222 1224678888899999874 4454 44543332211 1222
Q ss_pred CCeeeeeeeeecCCCEEEEecc---CCeEEEEEcC-CCeE--EEee-------------cc-CCcccccceeecCCCEEE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSH---DHNLYALDFR-NYRC--VYKL-------------PC-GGSIFGSPAIDEVHDVLY 616 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~---~g~l~~~d~~-tg~~--~w~~-------------~~-~~~~~~~~~~~~~~~~l~ 616 (829)
+.. .+...+..+++.+|+... .+.++.+... .+.. .... .. .+.-.....+++++..+|
T Consensus 82 ~~~-p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 82 GGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCC-cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence 222 122233344454554321 2445444321 1111 0000 00 111122456677778888
Q ss_pred EEecC-CeEEEEEccCCCceEE--EeeccC--CcceeeeeeeecCCEEEEEee-CCeEEEEc
Q 003331 617 VASTS-GRLTAISVKALPFHTL--WLHELE--VPAFASLCITSANRHVICCLV-DGHVVALD 672 (829)
Q Consensus 617 v~t~~-g~l~~~~~~~~~g~~~--w~~~~~--~~~~~s~~~~~~~~~l~~~~~-~g~i~~~d 672 (829)
+.... ..|+.++... +|+.. ...... ........+.+++..+|+... ++.|.+|+
T Consensus 161 v~d~g~d~v~~~~~~~-~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 161 SADLTANKLWTHRKLA-SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp EEETTTTEEEEEEECT-TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EeeCCCCEEEEEEccC-CCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 87653 4677776543 24322 222111 122234567778888888764 57788887
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.39 E-value=1.1 Score=41.68 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=45.0
Q ss_pred CcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEecc-C-----CeEEEEEcCCCeEEE
Q 003331 528 FSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSH-D-----HNLYALDFRNYRCVY 594 (829)
Q Consensus 528 ~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~-~-----g~l~~~d~~tg~~~w 594 (829)
|+.|+.. .++.||.+|+.+|+... +..+......|.+++++..|++... + ..++.++..+|+...
T Consensus 12 G~~v~f~-~~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 12 GDRIIFV-CCDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp TTEEEEE-ETTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCEEEEE-eCCcEEEEECCCCCEEE-EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 6666544 47889999999988764 4344445567888888887765432 2 248899988887654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=94.61 E-value=2.3 Score=41.51 Aligned_cols=187 Identities=12% Similarity=0.111 Sum_probs=91.7
Q ss_pred EEEEEEe--CCEEE--EEEcCCCcEEE--EEecCC-eeeeeeeeecCCCEEEEeccCCeEE--EEEcCCCeEEEe--ecc
Q 003331 530 QVVVGCY--KGKIY--FLDYLTGDIYW--TFQTCG-EVKCQPVVDAPRQLIWCGSHDHNLY--ALDFRNYRCVYK--LPC 598 (829)
Q Consensus 530 ~v~vg~~--dg~l~--~~d~~tG~~~w--~~~~~~-~~~~~~~~~~~~~~i~~gs~~g~l~--~~d~~tg~~~w~--~~~ 598 (829)
.+++|++ .+.|| .+|.++|++.- ...... ...+..+++++++.+|+.+. +.+. .+|.++ ...-. ...
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~-~~~~~~~~~~ 81 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT-EIVHEASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT-EEEEEEEEEC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC-CeEEEeeecC
Confidence 4889987 45675 56777776532 222222 22234567778888998764 4444 445443 33322 122
Q ss_pred CCcccccceeecCCCEEEEEec---CCeEEEEEccCCC--ceE------------EEeecc-CCcceeeeeeeecCCEEE
Q 003331 599 GGSIFGSPAIDEVHDVLYVAST---SGRLTAISVKALP--FHT------------LWLHEL-EVPAFASLCITSANRHVI 660 (829)
Q Consensus 599 ~~~~~~~~~~~~~~~~l~v~t~---~g~l~~~~~~~~~--g~~------------~w~~~~-~~~~~~s~~~~~~~~~l~ 660 (829)
+.. -....++.++..+|+.+. .+.++.+...... +.. ...... ..+......+.+++++++
T Consensus 82 ~~~-p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 82 GGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCC-cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence 222 233444555566666543 3455554432110 111 111110 112234566778888898
Q ss_pred EEee-CCeEEEEc--CCCCEEEE--eecCCceeecCc-cccc-CCCeEEEEee-CCeEEEEeCCCCcE
Q 003331 661 CCLV-DGHVVALD--SSGSIIWR--CRTGGPIFAGPC-TSFA-LPSQVLICSR-NGSIYSFEQESGNL 720 (829)
Q Consensus 661 ~~~~-~g~i~~~d--~~g~~~w~--~~~~~~~~~~~~-~~~~-~~~~i~~~t~-~g~l~~~d~~tG~~ 720 (829)
++.. ...|..++ .+|.+.-. .....+ -..|. +... .+..+|+... ++.|.+|+..+++.
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~-g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~ 227 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EeeCCCCEEEEEEccCCCceeeccceeecCC-CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence 8864 34677776 55654321 111100 01110 1122 2345776654 67788888766554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.33 E-value=5.5 Score=38.85 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=59.7
Q ss_pred CCcEEEEEEe-CCEEEEEEcCCCcEEEEEecC--Ceeee-eeeeecCCCEEEEeccC------------------CeEEE
Q 003331 527 DFSQVVVGCY-KGKIYFLDYLTGDIYWTFQTC--GEVKC-QPVVDAPRQLIWCGSHD------------------HNLYA 584 (829)
Q Consensus 527 ~~~~v~vg~~-dg~l~~~d~~tG~~~w~~~~~--~~~~~-~~~~~~~~~~i~~gs~~------------------g~l~~ 584 (829)
||.++|+... +.+|.++|+++-+.......+ ..... .+...+...+|+.++.. +.+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 5667888764 678999999998876644443 22222 23333445566654431 34678
Q ss_pred EEcCCCeEEEeeccCCcccccceeecCCCEEEEEec
Q 003331 585 LDFRNYRCVYKLPCGGSIFGSPAIDEVHDVLYVAST 620 (829)
Q Consensus 585 ~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~l~v~t~ 620 (829)
+|.++.+..|+...++.. .....+.+++.+|+.+.
T Consensus 178 ID~~tm~V~~QV~V~g~l-d~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 178 VDADKWEVAWQVLVSGNL-DNCDADYEGKWAFSTSY 212 (459)
T ss_dssp EETTTTEEEEEEEESSCC-CCEEECSSSSEEEEEES
T ss_pred EecCCceEEEEeeeCCCh-hccccCCCCCEEEEEec
Confidence 999999999998876643 23344555677777654
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.012 Score=56.15 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=49.7
Q ss_pred cCcccccccccccCccccchhhhhhcccccCCccccCCcccccCCCCCc--------------cCCCCCC-eeeeccccc
Q 003331 369 LNLEEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDGLPW--------------NLSSVPM-SCSFSRCNK 433 (829)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~--------------~~~~~~~-~~s~~~~~~ 433 (829)
....+.|++++|+..|+...|..|+++| ++++|++..+++....+.. +..||+| |+|+|+.++
T Consensus 21 ~~~~~~Pl~l~Hg~~gs~~~~~~l~~~L--~~~v~~~d~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~lvGhS~Gg~vA 98 (286)
T d1xkta_ 21 VQSSERPLFLVHPIEGSTTVFHSLASRL--SIPTYGLQCTRAAPLDSIHSLAAYYIDCIRQVQPEGPYRVAGYSYGACVA 98 (286)
T ss_dssp CCCCSCCEEEECCTTCCCGGGHHHHHTC--SSCEEEECCCTTSCCSCHHHHHHHHHHHHHHHCCSSCCEEEEETHHHHHH
T ss_pred CCCCCCeEEEECCCCccHHHHHHHHHHc--CCeEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEeecCCccHHH
Confidence 3455668999999999999999999999 5789999887753222111 1118999 999999988
Q ss_pred ee
Q 003331 434 VM 435 (829)
Q Consensus 434 ~~ 435 (829)
++
T Consensus 99 ~~ 100 (286)
T d1xkta_ 99 FE 100 (286)
T ss_dssp HH
T ss_pred HH
Confidence 77
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=6 Score=36.35 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=11.0
Q ss_pred cEEEEECCCCcEEEEE
Q 003331 497 KFICADAKRSSVLWEI 512 (829)
Q Consensus 497 ~l~~~d~~tg~~~w~~ 512 (829)
.+.+||+.+++ |+.
T Consensus 20 ~~~~yd~~t~~--W~~ 33 (288)
T d1zgka1 20 YLEAYNPSNGT--WLR 33 (288)
T ss_dssp CEEEEETTTTE--EEE
T ss_pred eEEEEECCCCe--EEE
Confidence 58899999876 764
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=90.09 E-value=8.8 Score=37.04 Aligned_cols=93 Identities=10% Similarity=-0.080 Sum_probs=49.1
Q ss_pred EEEEECCCCcEEEEE----EcCC-ceeeceEEeeCCcEEEEEEeC-CEEEEEEcCCCcEEEEEecC--C-eeeeeeeeec
Q 003331 498 FICADAKRSSVLWEI----KLEG-RIECSAAVLADFSQVVVGCYK-GKIYFLDYLTGDIYWTFQTC--G-EVKCQPVVDA 568 (829)
Q Consensus 498 l~~~d~~tg~~~w~~----~~~~-~~~~~~~~~~~~~~v~vg~~d-g~l~~~d~~tG~~~w~~~~~--~-~~~~~~~~~~ 568 (829)
+..||+.+++ |.. ..+. ......++..++..+++|..+ ..+.+||..++. |+.... . ......++..
T Consensus 54 ~~~yd~~t~~--w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~--w~~~~~~~~~r~~~~~~~~~ 129 (387)
T d1k3ia3 54 TSSWDPSTGI--VSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS--WIPGPDMQVARGYQSSATMS 129 (387)
T ss_dssp EEEECTTTCC--BCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE--EEECCCCSSCCSSCEEEECT
T ss_pred EEEEECCCCc--EeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCc--ccccccccccccccceeeec
Confidence 6689999886 431 1111 122233455565555555433 478999987754 543211 1 1112233333
Q ss_pred CCCEEEEeccC------CeEEEEEcCCCeEEEee
Q 003331 569 PRQLIWCGSHD------HNLYALDFRNYRCVYKL 596 (829)
Q Consensus 569 ~~~~i~~gs~~------g~l~~~d~~tg~~~w~~ 596 (829)
++.++++|... ..+..||+.+.+ |..
T Consensus 130 dG~v~v~GG~~~~~~~~~~v~~yd~~~~~--W~~ 161 (387)
T d1k3ia3 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTS 161 (387)
T ss_dssp TSCEEEECCCCCSSSCCCCEEEEETTTTE--EEE
T ss_pred CCceeeeccccccccccceeeeecCCCCc--eee
Confidence 44555555422 358999998875 654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.85 E-value=8.6 Score=35.21 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=18.8
Q ss_pred cceEECCEEEEee-e-----CCeEEEEecccccc
Q 003331 799 SPVMIGGRVFVGC-R-----DDYIYCIALETQHL 826 (829)
Q Consensus 799 s~~~~~~~l~vg~-~-----~g~l~~~d~~tg~~ 826 (829)
+.+..+++||+-+ . -..+++||+++++.
T Consensus 237 ~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 270 (288)
T d1zgka1 237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 270 (288)
T ss_dssp EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEEEECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence 4445688888842 2 24589999988764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.27 E-value=9.6 Score=35.06 Aligned_cols=222 Identities=13% Similarity=0.173 Sum_probs=109.3
Q ss_pred CcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEE
Q 003331 496 HKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWC 575 (829)
Q Consensus 496 g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~ 575 (829)
..+..+|+.++...-+.+.... +++..+....+..-+ ...|..||+++.+.+..+.....+...-=++ ...|-.
T Consensus 45 ~~VvIidl~n~~~~~Rrpi~Ad---sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis--~~~L~l 118 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPISAD---SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LNTVAL 118 (327)
T ss_dssp EEEEEEETTSTTSCEEEECCCS---EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESS--SSEEEE
T ss_pred ceEEEEECCCCCcceecccchh---hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecC--CCEEEE
Confidence 4688889877654333444332 455666655555544 6789999999999988888777664433222 244444
Q ss_pred eccCCeEEEEEcCCC-eEEEeeccCCccccc----ceeecCCCEEEE---EecC----CeEEEEEccCCCceEEEeeccC
Q 003331 576 GSHDHNLYALDFRNY-RCVYKLPCGGSIFGS----PAIDEVHDVLYV---ASTS----GRLTAISVKALPFHTLWLHELE 643 (829)
Q Consensus 576 gs~~g~l~~~d~~tg-~~~w~~~~~~~~~~~----~~~~~~~~~l~v---~t~~----g~l~~~~~~~~~g~~~w~~~~~ 643 (829)
-+ +..+|-|+.+.. .+...++......+. -..+.+.+.+.+ ...+ |.+-.|..+. +...-.+.+
T Consensus 119 VT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er---~~sQ~ieGh 194 (327)
T d1utca2 119 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGH 194 (327)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCS
T ss_pred Ec-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc---CcCccccce
Confidence 44 347999997432 344444443322111 112332332221 1222 2233344332 111111111
Q ss_pred Ccceeeeeeeec--CCEEEE-Ee---eCCeEEEEc-C---CCCEEEEeecCCceeecC-------c--ccccCCCeEEEE
Q 003331 644 VPAFASLCITSA--NRHVIC-CL---VDGHVVALD-S---SGSIIWRCRTGGPIFAGP-------C--TSFALPSQVLIC 704 (829)
Q Consensus 644 ~~~~~s~~~~~~--~~~l~~-~~---~~g~i~~~d-~---~g~~~w~~~~~~~~~~~~-------~--~~~~~~~~i~~~ 704 (829)
...|.+..+... ...+++ +. ..+.+.+++ . .|..-+..+. ..++..| + -...+.|.+|+-
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~-vdi~fppea~~DFPvamqvs~kygiiyvi 273 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKA-VDVFFPPEAQNDFPVAMQISEKHDVVFLI 273 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEE-EECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCccee-EEEECCccccCCcEEEEEeeccCCEEEEE
Confidence 112222211100 112222 21 124566655 1 2222111100 0011111 0 112356889999
Q ss_pred eeCCeEEEEeCCCCcEEEEEecCC
Q 003331 705 SRNGSIYSFEQESGNLLWEYSVGD 728 (829)
Q Consensus 705 t~~g~l~~~d~~tG~~~w~~~~~~ 728 (829)
|.-|.++.||..||..+..-....
T Consensus 274 TK~G~i~lyDleTgt~i~~nRIs~ 297 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRISG 297 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCS
T ss_pred ecCcEEEEEEcccccEEEEeecCC
Confidence 999999999999999998766543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=86.71 E-value=8.8 Score=37.36 Aligned_cols=100 Identities=9% Similarity=0.046 Sum_probs=61.6
Q ss_pred ceEEeeC---CCeEEEEec-CCCcEEEEECCCCcEEEEEEcCC--ceeeceEEeeCCc--EEEEEEe-------------
Q 003331 478 PLVVLKD---SDIYLFVGS-HSHKFICADAKRSSVLWEIKLEG--RIECSAAVLADFS--QVVVGCY------------- 536 (829)
Q Consensus 478 p~v~~~d---~~~~l~igs-~~g~l~~~d~~tg~~~w~~~~~~--~~~~~~~~~~~~~--~v~vg~~------------- 536 (829)
|.+...+ ++.++|+.. .+.+|.++|+++-++.-....+. .... ..+..+.+ +|+.++.
T Consensus 88 P~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG-~r~~~~p~T~YV~~~~e~~vP~pndg~~l~ 166 (459)
T d1fwxa2 88 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHG-LRPQKWPRSNYVFCNGEDETPLVNDGTNME 166 (459)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEE-EEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred CcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCce-eecccCCCeEEEEccCccccccCCCCcccc
Confidence 5555444 567899987 46899999999988755444432 2211 12222223 4444332
Q ss_pred -----CCEEEEEEcCCCcEEEEEecCCeeeeeeeeecCCCEEEEeccC
Q 003331 537 -----KGKIYFLDYLTGDIYWTFQTCGEVKCQPVVDAPRQLIWCGSHD 579 (829)
Q Consensus 537 -----dg~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~i~~gs~~ 579 (829)
.+.+-++|.++.++.|+...++... ...++.+++.+|+.+++
T Consensus 167 d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld-~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 167 DVANYVNVFTAVDADKWEVAWQVLVSGNLD-NCDADYEGKWAFSTSYN 213 (459)
T ss_dssp CGG-EEEEEEEEETTTTEEEEEEEESSCCC-CEEECSSSSEEEEEESC
T ss_pred chhhcceEEEEEecCCceEEEEeeeCCChh-ccccCCCCCEEEEEecc
Confidence 1346789999999999988776432 23445566777776543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.37 E-value=14 Score=33.97 Aligned_cols=209 Identities=11% Similarity=0.155 Sum_probs=106.3
Q ss_pred CCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEEEeCCEEEEEEcCCC-cEEEEEecCCeeeeeee----eecC
Q 003331 495 SHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVGCYKGKIYFLDYLTG-DIYWTFQTCGEVKCQPV----VDAP 569 (829)
Q Consensus 495 ~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg~~dg~l~~~d~~tG-~~~w~~~~~~~~~~~~~----~~~~ 569 (829)
...|..||+++.+.+-.+.....+..-.-+ .+ ..|-.-+ +..+|.|+.+.. .+...|+-+.....+.+ .+.+
T Consensus 82 g~~LQiFnletK~klks~~~~e~VvfWkWi-s~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~ 158 (327)
T d1utca2 82 GKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAK 158 (327)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCCEEEES-SS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCeEEEEehhHhhhhceEEcCCCcEEEEec-CC-CEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCC
Confidence 456999999998888777777665322222 23 2444443 567999997432 34444543332211111 1222
Q ss_pred CCEE-EEe--ccC----CeEEEEEcCCCeEEEeeccCCcccccceeecCC--CEEEEE----ecCCeEEEEEccCC-Cce
Q 003331 570 RQLI-WCG--SHD----HNLYALDFRNYRCVYKLPCGGSIFGSPAIDEVH--DVLYVA----STSGRLTAISVKAL-PFH 635 (829)
Q Consensus 570 ~~~i-~~g--s~~----g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~--~~l~v~----t~~g~l~~~~~~~~-~g~ 635 (829)
.+.+ ++| ..+ |.+..|..+.+. -..++.+...++...++++. ..|++- ...+.|.++++.+. .|.
T Consensus 159 ~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~ 237 (327)
T d1utca2 159 QKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 237 (327)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTC
T ss_pred CCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCC
Confidence 2222 222 122 334444444321 11122222223222222211 123332 22357778776652 222
Q ss_pred EEE---eecc--C----CcceeeeeeeecCCEEEEEeeCCeEEEEc-CCCCEEEEeecCCceeecCcccccCCCeEEEEe
Q 003331 636 TLW---LHEL--E----VPAFASLCITSANRHVICCLVDGHVVALD-SSGSIIWRCRTGGPIFAGPCTSFALPSQVLICS 705 (829)
Q Consensus 636 ~~w---~~~~--~----~~~~~s~~~~~~~~~l~~~~~~g~i~~~d-~~g~~~w~~~~~~~~~~~~~~~~~~~~~i~~~t 705 (829)
.-. ..+. + .....+..++...+.+|+-+..|.++.|| .+|..++...... +.+++++
T Consensus 238 ~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~-------------~~iF~~a 304 (327)
T d1utca2 238 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-------------ETIFVTA 304 (327)
T ss_dssp CCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-------------SCEEEEE
T ss_pred CCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCC-------------CceEEec
Confidence 111 1111 1 11224556677889999999999999999 9999988765432 2344433
Q ss_pred ---eCCeEEEEeCCCCcEE
Q 003331 706 ---RNGSIYSFEQESGNLL 721 (829)
Q Consensus 706 ---~~g~l~~~d~~tG~~~ 721 (829)
..+++++++ +.|+++
T Consensus 305 ~~~~~~Gi~~VN-r~GqVl 322 (327)
T d1utca2 305 PHEATAGIIGVN-RKGQVL 322 (327)
T ss_dssp EETTTTEEEEEE-TTSEEE
T ss_pred cCCCCceEEEEC-CCCeEE
Confidence 236778887 457665
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.54 E-value=13 Score=32.04 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=75.1
Q ss_pred CCCeEEEEecCCCcEEEEECCCCcEEEEEEcCCceeeceEEeeCCcEEEEE------EeCCEEEEEEcCC-CcEEEEEec
Q 003331 484 DSDIYLFVGSHSHKFICADAKRSSVLWEIKLEGRIECSAAVLADFSQVVVG------CYKGKIYFLDYLT-GDIYWTFQT 556 (829)
Q Consensus 484 d~~~~l~igs~~g~l~~~d~~tg~~~w~~~~~~~~~~~~~~~~~~~~v~vg------~~dg~l~~~d~~t-G~~~w~~~~ 556 (829)
+.+..+++++..|.+.++-...|+..--. ...+..+......-+.+... .....||..|++. |+. .+...
T Consensus 24 ~~d~ll~~~~seG~vni~~l~g~~~vkLt--kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE-~~i~s 100 (313)
T d2hu7a1 24 DGDKLLVVGFSEGSVNAYLYDGGETVKLN--REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEE-QRLEA 100 (313)
T ss_dssp TTTEEEEEEEETTEEEEEEESSSSCEECC--SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCE-EECTT
T ss_pred cCCcEEEEEeccceEEEEEEeCCEEEEEe--cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCee-eEecC
Confidence 45667888888887766666666654211 12221122221111222221 1123466666442 433 23333
Q ss_pred CCeeeeeeeeecCCCEEEEeccCCeEEEEEcCCCeEEEeeccCCc----------ccccceeecCCCEEEEEec-CCeEE
Q 003331 557 CGEVKCQPVVDAPRQLIWCGSHDHNLYALDFRNYRCVYKLPCGGS----------IFGSPAIDEVHDVLYVAST-SGRLT 625 (829)
Q Consensus 557 ~~~~~~~~~~~~~~~~i~~gs~~g~l~~~d~~tg~~~w~~~~~~~----------~~~~~~~~~~~~~l~v~t~-~g~l~ 625 (829)
...+.......++...+++|+.....+.|-++.|++.--...... +...-++.++...++++.. .|.+.
T Consensus 101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 444566666677888999998777666666677877654433321 2222233332233555655 66777
Q ss_pred EEEccC
Q 003331 626 AISVKA 631 (829)
Q Consensus 626 ~~~~~~ 631 (829)
++++..
T Consensus 181 i~tpke 186 (313)
T d2hu7a1 181 VFDSGE 186 (313)
T ss_dssp EECCSS
T ss_pred EecCCC
Confidence 777665
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.99 E-value=20 Score=33.88 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=33.0
Q ss_pred ccceeecCCCEEEEEec-CCeEEEEEccCCC-ceEEEeeccCCcceeeeeeeecCCEEEEEeeC
Q 003331 604 GSPAIDEVHDVLYVAST-SGRLTAISVKALP-FHTLWLHELEVPAFASLCITSANRHVICCLVD 665 (829)
Q Consensus 604 ~~~~~~~~~~~l~v~t~-~g~l~~~~~~~~~-g~~~w~~~~~~~~~~s~~~~~~~~~l~~~~~~ 665 (829)
.-++++++++.||++.. .+.|.+|+++... ++..-....... .-.+.+...++.+|++...
T Consensus 209 NGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~-pDNi~~d~~~g~lwva~~p 271 (340)
T d1v04a_ 209 NGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTL-VDNISVDPVTGDLWVGCHP 271 (340)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSE-EEEEEECTTTCCEEEEEES
T ss_pred ceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCC-CCccEEecCCCEEEEEECC
Confidence 34566777788888754 5678888876421 122112222111 1222333356788888653
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=81.77 E-value=0.06 Score=49.33 Aligned_cols=63 Identities=10% Similarity=-0.115 Sum_probs=41.9
Q ss_pred ccccccccccCccccchhhhhhcccccCCccccCCcccccCCC--------CCccCCCCCC-eeeecccccee
Q 003331 372 EEDKEHQFHSGYSRTENHAVVSKRLKVNSTKYFKPELHHHKDG--------LPWNLSSVPM-SCSFSRCNKVM 435 (829)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~--------~~~~~~~~~~-~~s~~~~~~~~ 435 (829)
.+++++++|+..|+...|..|++.|. ++.+|...-.++..-. .-.+..||.| |||+||.++++
T Consensus 16 ~~~~l~~lhg~~g~~~~~~~la~~L~-~~~v~~~~~~g~~~~a~~~~~~i~~~~~~~~~~lvGhS~GG~vA~~ 87 (230)
T d1jmkc_ 16 QEQIIFAFPPVLGYGLMYQNLSSRLP-SYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLTLFGYSAGCSLAFE 87 (230)
T ss_dssp CSEEEEEECCTTCCGGGGHHHHHHCT-TEEEEEECCCCSTTHHHHHHHHHHHHCCSSCEEEEEETHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHCC-CCEEeccCcCCHHHHHHHHHHHHHHhCCCCcEEEEeeccChHHHHH
Confidence 34579999999999999999999995 4444433322210000 0011228889 99999998876
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.43 E-value=30 Score=34.25 Aligned_cols=133 Identities=13% Similarity=0.063 Sum_probs=65.4
Q ss_pred EEEEECCCCcEEEEEEcC------CceeeceEEeeCCcEEEEEEeC-----CEEEEEEcCCCcEEEEEe--cCCe---ee
Q 003331 498 FICADAKRSSVLWEIKLE------GRIECSAAVLADFSQVVVGCYK-----GKIYFLDYLTGDIYWTFQ--TCGE---VK 561 (829)
Q Consensus 498 l~~~d~~tg~~~w~~~~~------~~~~~~~~~~~~~~~v~vg~~d-----g~l~~~d~~tG~~~w~~~--~~~~---~~ 561 (829)
++.+|..++...+..... +.....+...+++ .+++-..+ ..++.+|+.+|+..-.+. ..+- ..
T Consensus 230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~-~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~ 308 (465)
T d1xfda1 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (465)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred EEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCC-eEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccC
Confidence 566777666555432211 1222334555554 45444332 258899999998754332 1111 12
Q ss_pred eeeeeecCCCEEE---Eecc--CCeEEEEEcC------CCeEEEeeccCCcc-cccceeecCCCEEEEEecC-----CeE
Q 003331 562 CQPVVDAPRQLIW---CGSH--DHNLYALDFR------NYRCVYKLPCGGSI-FGSPAIDEVHDVLYVASTS-----GRL 624 (829)
Q Consensus 562 ~~~~~~~~~~~i~---~gs~--~g~l~~~d~~------tg~~~w~~~~~~~~-~~~~~~~~~~~~l~v~t~~-----g~l 624 (829)
..|.+..+++.++ .... .+++|.++.. +|+....+..+... .....++.+++.||+.+.. ..|
T Consensus 309 ~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hl 388 (465)
T d1xfda1 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (465)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred CceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEE
Confidence 3456665555432 2222 2456666532 22222222222222 2223467767888765432 247
Q ss_pred EEEEccC
Q 003331 625 TAISVKA 631 (829)
Q Consensus 625 ~~~~~~~ 631 (829)
|.++++.
T Consensus 389 y~v~l~g 395 (465)
T d1xfda1 389 YSANTVG 395 (465)
T ss_dssp EEECSST
T ss_pred EEEECCC
Confidence 8877664
|