Citrus Sinensis ID: 003359

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------

MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

ccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHcccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEEEEEccccccEEEEcccccHHHHccccccEEEccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcc

ccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEEEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccHHHHcccHcHccccccccccccccccccccHHHccccccHHHHcHHccccHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccEEEEEccccccHEccEEEccccccccEEEEEccccEEEEEEccccEEEEccccccHHHHccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc

MGSSKREIELEEQLKDAgnlllnppspvdEVINLLDKVEHLLANveqapsrsmrDALLptmkglitndllrrsdMDVRLSVTSCISEitritapdspyddELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRkenqdvsptswklGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACIcgsddenpqhghligsenqlatkepdppclgevvhdvdgisksvtsngtaasrnedsVVKDKLSNVLERCSQVErsqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissgrkiakvpgrrksddkgvdcspslnqdskKEALNLTdkmladptsaslksglpdgshhrrgrtkkqgstvnqnadhnslSVSLSTRVeetasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtKKRRRSLVVAISAqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgKEEKKMISKARAkssdrdgshsketpksevkkhsvgkEKKKVISKAIAKssnknhleetptTEIKKKLTARKEEKKKISKAGAksldgncsaetpktgvkrkltagkemdseapalNEQLVGsrikvwwpmdetfykgvvdnydpikkkhrilyadgDEEILNLKKERWELikggssaeeqetdvlkpdgssdilpkgkeEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLAnveqapsrsmrdalLPTMKGlitndllrrsdMDVRLSVtsciseitritapdspYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASvrkenqdvsptswklgeKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKsvtsngtaasrnedsvvkDKLSNVLERCsqversqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissGRKIAKvpgrrksddkgvdcspslnqdskKEALNLTDKMLADPTSaslksglpdgshhrrgrtkkqgstvnqnadhnslsvslstRVEEtasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtkkrrrSLVVAisaqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgkeekkmiskarakssdrdgshsketpksevkkhsvgkekkKVISKAiakssnknhleetptteikkkltarkeekkkiskagaksldgncsaetpktgvkrkltagkemdseapalneqlvgsrikvwWPMDETFYKgvvdnydpiKKKHRILYADGDEEILNLKKERWELIKggssaeeqetdvlkpdgssdilpkGKEEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEAsggkkkktskgavksPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPksevkkhsvgkekkkviskaiakssnknHLEETPTTEIkkkltarkeekkkISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

***************************VDEVINLLDKVEHLLANV**********ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGS**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELI*****************************IEFELVNEVKASALKRLVCKLLSAVNLFLVIF**

*****************************EVINLLDKVEHLLA*************LLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRK**********KLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDD***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************PALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERW*******************************************************AVNLFLVIFDA

**********EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSV*************VVKDKLSNVLERC*******************************************NSLMNPEEGYDHSWISSGR********************SLNQDSKKEALNLTDKMLADPTS****************************ADHNSLS*************************************************************DKEKPLQLSVTKKRRRSLVVAISAQNI******************PNIDENYSEDTPK*********************************************************AKSSNKNHLEETPTTEIKK*****************KSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

******EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGH***SE*************************************************LERCSQVERSQSIDAKCSA**D*SDSLRNVKS***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGG*************************************SALKRLVCKLLSAVNLFLVIFDA

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MGSSKREIELEEQLKDAGNLLLNPPSPxxxxxxxxxxxxxxxxxxxxxPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRLVCKLLSAVNLFLVIFDA

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		827	2.2.26 [Sep-21-2011]
Q9HFF5		1205	Sister chromatid cohesion	yes	no	0.180	0.123	0.286	7e-13
Q04264		1277	Sister chromatid cohesion	yes	no	0.207	0.134	0.269	7e-13
Q5F3V3		1330	Sister chromatid cohesion	yes	no	0.233	0.145	0.263	1e-12
Q29RF7		1337	Sister chromatid cohesion	yes	no	0.233	0.144	0.269	1e-12
A4L9P7		1333	Sister chromatid cohesion	yes	no	0.233	0.144	0.269	2e-12
Q6A026		1332	Sister chromatid cohesion	yes	no	0.233	0.144	0.269	2e-12
A1L1F4		1320	Sister chromatid cohesion	yes	no	0.243	0.152	0.245	3e-12
Q5U241		1464	Sister chromatid cohesion	N/A	no	0.226	0.127	0.243	3e-12
Q4KLU7		1323	Sister chromatid cohesion	N/A	no	0.237	0.148	0.246	6e-12
Q4VA53		1446	Sister chromatid cohesion	no	no	0.226	0.129	0.243	2e-11

>sp\|Q9HFF5\|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1	Back alignment and function desciption

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 1/150 (0%)

Query: 54  RDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSA 113
           RD++LP  + L+ N+LL   D  +R     CI E+ R+ APD+P+    +++ FQ+ +  
Sbjct: 44  RDSVLPVARSLVNNNLLHHKDKGIRSYTLCCIVELLRLCAPDAPFTLSQLEDIFQVILKI 103

Query: 114 FENLSHASGRYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFV 172
              L +    YY +   IL++++ V+S +L++DL   ++ +V +F+ F  + R      V
Sbjct: 104 LSGLMNQESTYYPQIYEILESLSNVKSAVLIVDLPNAEEFLVNIFRLFFDLARKGTTKNV 163

Query: 173 FAAMETIMTLVIDESEDVSWDLLRILLASV 202
              M  I+  +I+E   +    L IL A +
Sbjct: 164 EFYMLDIINQLINEINTIPAAALNILFAQL 193

Required for the establishment and maintenance of sister chromatid cohesion during S phase. Prevents their formation until eso1 is present. May also have a role during meiosis.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|Q04264\|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1	Back alignment and function description

>sp\|Q5F3V3\|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2	Back alignment and function description

>sp\|Q29RF7\|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1	Back alignment and function description

>sp\|A4L9P7\|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1	Back alignment and function description

>sp\|Q6A026\|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3	Back alignment and function description

>sp\|A1L1F4\|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1	Back alignment and function description

>sp\|Q5U241\|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2	Back alignment and function description

>sp\|Q4KLU7\|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1	Back alignment and function description

>sp\|Q4VA53\|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		827
255572741		635	conserved hypothetical protein [Ricinus	0.694	0.903	0.486	1e-148
224072711		901	predicted protein [Populus trichocarpa]	0.681	0.625	0.476	1e-132
449436185		820	PREDICTED: uncharacterized protein LOC10	0.459	0.463	0.532	1e-108
297743633		764	unnamed protein product [Vitis vinifera]	0.836	0.905	0.374	1e-107
224089356		1037	predicted protein [Populus trichocarpa]	0.470	0.375	0.473	2e-96
359476152		858	PREDICTED: uncharacterized protein LOC10	0.669	0.645	0.404	8e-96
296082067		899	unnamed protein product [Vitis vinifera]	0.669	0.616	0.387	5e-93
147766183		1327	hypothetical protein VITISV_002799 [Viti	0.666	0.415	0.395	7e-91
357467897		835	Sister chromatid cohesion protein PDS5-l	0.444	0.440	0.473	1e-88
356515006		894	PREDICTED: uncharacterized protein LOC10	0.296	0.274	0.605	5e-86

>gi\|255572741\|ref\|XP_002527303.1\| conserved hypothetical protein [Ricinus communis] gi\|223533303\|gb\|EEF35055.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 301/619 (48%), Positives = 399/619 (64%), Gaps = 45/619 (7%)

Query: 7   EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
           EIELE+QLK+AGN LLNPPS +DE++N+LDK+EHLL NVEQAPS+SM+DALLP+MK LI+
Sbjct: 5   EIELEQQLKEAGNRLLNPPSSIDELLNMLDKLEHLLINVEQAPSKSMQDALLPSMKALIS 64

Query: 67  NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
           N LLR SD DV++SV SC+SE TRITAPD PY+D+ MKE F+L V+AFE LSH S R YM
Sbjct: 65  NALLRNSDPDVKVSVVSCLSEFTRITAPDPPYNDDHMKEIFELTVAAFEKLSHVSSRCYM 124

Query: 127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
           KA+SILDTVA+VRSCL+MLDLE D+L++++FQHFLK+IRSNHPH VF AMETIMTL+I+E
Sbjct: 125 KAVSILDTVARVRSCLIMLDLELDELIIKIFQHFLKIIRSNHPHAVFLAMETIMTLIINE 184

Query: 187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
           S+ +S  LL  LLASVRKENQ  SP +WKLGEKV    AAKLK  +KEA+   G A D+Y
Sbjct: 185 SDTISMGLLTALLASVRKENQSASPIAWKLGEKVIVNSAAKLKPYIKEALHCDGRAFDEY 244

Query: 247 AEIVACICGSDDENPQHGHLIGSENQLATKE---PDPPCLGEVVHDVDGISKSVTSNGTA 303
           A I+A IC  +     H H+ GS + L TKE   PD    GE++H VDGI +S TSNG A
Sbjct: 245 APIIASICQDESHTVVHDHVNGSRDHLVTKEGRPPDAASPGEILHFVDGIPESTTSNGNA 304

Query: 304 ASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRG 363
           ++R+ ++ + D  +  +E C  ++ S S +A+ +A  +       VK E E  + PRKRG
Sbjct: 305 SARDANNGINDNSTKSMEHCPLIQHSDSTEAQGNADIE-------VKLEMEQGTVPRKRG 357

Query: 364 RKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCS--PSLNQDSKKEALNLTDK 421
            KPNSLMNPEEGYDH WI + RK AKV   RK    G+D     ++ +    E + LT +
Sbjct: 358 WKPNSLMNPEEGYDHCWIPTCRKGAKVSRERKLPYMGIDLCLDSTVPKKHVTELVGLTPE 417

Query: 422 M--LADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSV--SLSTRVEETASGS 477
              +   ++ S    LPDG+H ++ R KK  S +NQ+AD +SL V   L+T   E A   
Sbjct: 418 TSGIIGASTPSPNQCLPDGTHRKKSRPKKNPSNMNQDADSSSLEVVKVLNTESREKAKAE 477

Query: 478 ADFSLRKKPEDRSDTEIKHRKRS-------KTNEEISQPPGYGVSEKEAVVPSADKEKPL 530
            + SLRK  E RS+ E+K  K+S       KT +  S P    +S+++  + +  +E+P+
Sbjct: 478 YEVSLRKPSERRSNIEVKLHKQSRKIGIAAKTAKWTSLPSANLLSDEKDDILNEPEERPV 537

Query: 531 QLSV---------------TKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDEN 575
             S                T  R+ SLV+ +S    +E S  KK K+S       + D N
Sbjct: 538 HQSTQIGVRNSQKGRSLVQTDARKISLVIGVSNVRAAEESRIKKSKSS-------DRDGN 590

Query: 576 YSEDTPKTEIKRKHTSGKE 594
           + E+ P  ++KRK T  KE
Sbjct: 591 HKEEIPNKKLKRKRTPRKE 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224072711\|ref\|XP_002303844.1\| predicted protein [Populus trichocarpa] gi\|222841276\|gb\|EEE78823.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449436185\|ref\|XP_004135874.1\| PREDICTED: uncharacterized protein LOC101213167 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297743633\|emb\|CBI36516.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224089356\|ref\|XP_002308702.1\| predicted protein [Populus trichocarpa] gi\|222854678\|gb\|EEE92225.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359476152\|ref\|XP_002282819.2\| PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296082067\|emb\|CBI21072.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147766183\|emb\|CAN67967.1\| hypothetical protein VITISV_002799 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357467897\|ref\|XP_003604233.1\| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] gi\|355505288\|gb\|AES86430.1\| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356515006\|ref\|XP_003526192.1\| PREDICTED: uncharacterized protein LOC100790092 isoform 2 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		827
TAIR\|locus:2116787		873	AT4G31880 [Arabidopsis thalian	0.698	0.662	0.340	5.3e-98
TAIR\|locus:2200557		990	AT1G15940 [Arabidopsis thalian	0.636	0.531	0.347	1.2e-93
TAIR\|locus:2169058		1607	AT5G47690 [Arabidopsis thalian	0.270	0.139	0.441	5.4e-64
TAIR\|locus:2025712		774	AT1G80810 [Arabidopsis thalian	0.487	0.520	0.374	4.2e-63
TAIR\|locus:2183750		395	AT5G10950 "AT5G10950" [Arabido	0.108	0.227	0.522	5.7e-19
UNIPROTKB\|E2R7R4		1337	PDS5A "Uncharacterized protein	0.233	0.144	0.269	3.7e-13
UNIPROTKB\|Q29RF7		1337	PDS5A "Sister chromatid cohesi	0.233	0.144	0.269	6e-13
RGD\|1307094		1333	Pds5a "PDS5, regulator of cohe	0.233	0.144	0.269	1.8e-12
UNIPROTKB\|F1NIQ3		1330	PDS5A "Sister chromatid cohesi	0.233	0.145	0.263	1.9e-12
UNIPROTKB\|Q5F3V3		1330	PDS5A "Sister chromatid cohesi	0.233	0.145	0.263	1.9e-12

TAIR\|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 752 (269.8 bits), Expect = 5.3e-98, Sum P(2) = 5.3e-98
 Identities = 208/611 (34%), Positives = 319/611 (52%)

Query:     4 SKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKG 63
             S  + ELE Q+ +AG  L++PPS +DE+++ LDK+   LA VEQ+P  SM++AL P MKG
Sbjct:     2 SDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMKG 61

Query:    64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGR 123
             L+   L + SD+DV+++V +CISEITRITAPD+PYDD+ MKE F+L VS+FE+L   S R
Sbjct:    62 LVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSR 121

Query:   124 YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLV 183
              Y K +SIL+TVAKVRSC++MLDLECD L++EMFQHFLK IR +H   VF++ME IMTLV
Sbjct:   122 SYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTLV 181

Query:   184 IDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL 243
             ++ESED+  ++L  +L SV+K+++ +S  S +L E+V + CA+KLKT L EAV+S G+ L
Sbjct:   182 LEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVPL 240

Query:   244 DDYAEIVACICGSDDENPQHGHLIGSENQLAT----KEPDPPCLGEVVH----DV--DGI 293
             D Y+ IVA IC       Q   ++ +E + +     +E +     E+      D   D  
Sbjct:   241 DKYSNIVASICEGTFSALQQDQVVANEKEDSQGHIKRETEVEKAAEISTPERTDAPKDES 300

Query:   294 SKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVK--- 350
              KS  SNG A  +N+ SV  D +    +  ++ E  Q  + + +   +T++   +V+   
Sbjct:   301 GKSGVSNGVA-QQNDSSVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359

Query:   351 SETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQD 410
              E E ES+  K+          EE      + S   +   P      D  V  + S   +
Sbjct:   360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPV-----DSSVTAATSSENE 414

Query:   411 SKKEALNLTDKMLADPT----SASLKSGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVS 465
               K    L  K   D T    S S+   LP+ S  ++    KK+ S+  +     S++  
Sbjct:   415 KNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESSTEEVKPSASIATE 474

Query:   466 LSTRVEETASGSADFSLRKKPEDRSDTE--IKHRKRSKTNEEISQPPGYGVSEKEAVVPS 523
               +    T+         KK    S T+  +   K+S +  ++++      SEK+ V   
Sbjct:   475 EVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQ-----SEKKVVGSD 529

Query:   524 ADKEKPLQLSVTKKRRRSLVVAISAQNISEAXXXXXXXXXXXXXXXPNIDENYS-EDTPK 582
               +E        KK  R   +   + + S                    +   + E++P 
Sbjct:   530 NAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPAVSSGKLASKSKKEAKQTVEESPN 589

Query:   583 TEIKRKHTSGK 593
             +  KRK + G+
Sbjct:   590 SNTKRKRSLGQ 600

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR\|locus:2200557 AT1G15940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183750 AT5G10950 "AT5G10950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00031506	hypothetical protein (901 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		827
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.004

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

 Score = 40.5 bits (94), Expect = 0.004
 Identities = 51/234 (21%), Positives = 87/234 (37%), Gaps = 13/234 (5%)

Query: 483  RKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSL 542
            RK  E +   E K    +K  EE  +       E +     A K    +    + ++++ 
Sbjct: 1278 RKADELKKAEEKKKADEAKKAEEKKK-----ADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332

Query: 543  VVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKT-EIKRKHTSGKEEKKMISK 601
                 A+   +A+   K +    A ++   +E       K  E K+K  + K++ +   K
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKK 1392

Query: 602  AR--AKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKK 659
            A    K ++ D   + E  K+   K    + KKK   K  A  + K   E     E KKK
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452

Query: 660  LTARKEEKKKISKAGAKSLDGNCSAETPKTG-VKRKLTAGKEMDSEAPALNEQL 712
                 EE KK  +A  K+ +   + E  K     +K    K+   EA    ++ 
Sbjct: 1453 ----AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		827
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	100.0
KOG1525		1266	consensus Sister chromatid cohesion complex Cohesi	99.82
PF09465		55	LBR_tudor: Lamin-B receptor of TUDOR domain; Inter	99.07
smart00333		57	TUDOR Tudor domain. Domain of unknown function pre	97.51
smart00743		61	Agenet Tudor-like domain present in plant sequence	97.36
cd04508		48	TUDOR Tudor domains are found in many eukaryotic o	97.28
PF09038		122	53-BP1_Tudor: Tumour suppressor p53-binding protei	96.1
PF06003		264	SMN: Survival motor neuron protein (SMN); InterPro	95.23
KOG4675		273	consensus Uncharacterized conserved protein, conta	94.14
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	91.04
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	84.51
PF05641		68	Agenet: Agenet domain; InterPro: IPR008395 This do	82.64

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

Probab=100.00  E-value=5.9e-51  Score=487.57  Aligned_cols=247  Identities=34%  Similarity=0.552  Sum_probs=234.4

Q ss_pred             HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCchhhhhHHHHHHhhh
Q 003359           12 EQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRI   91 (827)
Q Consensus        12 ~~l~~~G~kLi~~piS~dELLKRLkkL~~eLs~lDQ~~vdS~~~SL~pl~k~LVs~~LLkHkDkdVRayVAcCLADILRI   91 (827)
                      ++.-.-||+++..+++++|||+||++|++||++++|++.+  .++|.|++.+|++++||+|+|+|||+||||||+|||||
T Consensus         3 ~~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~--~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi   80 (1266)
T KOG1525|consen    3 EQFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQDNLD--LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRI   80 (1266)
T ss_pred             ccccCCCCccccCcccHHHHHHHHHHHHHHHhhcccCchh--HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHH
Confidence            3455679999999999999999999999999999999966  99999999999999999999999999999999999999


Q ss_pred             cCCCCCCCchHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhcceeeeccCCchHHHHHHHHHHHHHhhcCCchh
Q 003359           92 TAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHF  171 (827)
Q Consensus        92 yAPDAPYtDdqLKDIF~LfV~qf~~LaD~ssp~F~q~~yLLEsLAeVKS~VLmlDLe~ddLI~eLFktFFdiVr~~hp~k  171 (827)
                      |||||||++.||+|||+||++||.||.|+.+|||.|||||||+||+||.|++|.|.+|++|+.+||++||+++|.+||.+
T Consensus        81 ~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~  160 (1266)
T KOG1525|consen   81 YAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK  160 (1266)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence            99999999999999999999999999999999999999999999999977777777899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHhc-------CCC-C
Q 003359          172 VFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR-------GIA-L  243 (827)
Q Consensus       172 V~~~M~dILs~VIeEsE~VP~eLLDvIL~~ll~~~ks~~PaAy~LA~~VI~~CadKLqp~I~q~l~S~-------Gi~-l  243 (827)
                      |+. |.+||+.+|.|.+.||.++|++||.+|+++.+++.+.|+.||..+|..|++.+.+.|++||++.       +++ .
T Consensus       161 v~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~  239 (1266)
T KOG1525|consen  161 VFN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLK  239 (1266)
T ss_pred             HHH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchh
Confidence            999 9999999999999999999999999999999999999999999999999999999999999974       222 3


Q ss_pred             chhHHHHHHHhccCCCCC
Q 003359          244 DDYAEIVACICGSDDENP  261 (827)
Q Consensus       244 d~Y~eIV~sI~q~~s~~l  261 (827)
                      ..||+||+.+-.+++..|
T Consensus       240 ~~~he~i~~L~~~~p~ll  257 (1266)
T KOG1525|consen  240 IKYHELILELWRIAPQLL  257 (1266)
T ss_pred             hHHHHHHHHHHHhhHHHH
Confidence            789999999999887765

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane	Back alignment and domain information

>smart00333 TUDOR Tudor domain	Back alignment and domain information

>smart00743 Agenet Tudor-like domain present in plant sequences	Back alignment and domain information

>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains	Back alignment and domain information

>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix	Back alignment and domain information

>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins	Back alignment and domain information

>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		827
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 75/521 (14%), Positives = 140/521 (26%), Gaps = 163/521 (31%)

Query: 4   SKREIELEEQLKDAGNLLLNPPSPVDEV-INLLDKVEHLLANVEQAPSRSMRDALLPTMK 62
           S       EQ     + L N      +  ++ L     L   + +   R  ++ L+  + 
Sbjct: 106 SMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVL 159

Query: 63  G----LITNDLLRRSDMDVR-------LSVTSCISEITRITAPDSPYDDELMKEFFQLAV 111
           G     +  D+     +  +       L++ +C S  T +         E++++      
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------EMLQKLLYQID 210

Query: 112 SAFENLSHASGRYYMK------ALSILDTVAKVRSCLLMLDLECDKLVVEMFQH------ 159
             + + S  S    ++       L  L       +CLL+L    +      F        
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 160 ---------FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVS 210
                    FL    + H           MTL  DE + +    L      + +E    +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIV-ACICGSDDENPQHGHLIGS 269
           P    +        A  ++  L      + +  D    I+ + +                
Sbjct: 327 PRRLSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSL---------------- 363

Query: 270 ENQLATKE-----------PDPPCLGEVVHDVDGISKSVTS----NGTAASRNEDSVVKD 314
            N L   E           P              I   + S    +     +++  VV +
Sbjct: 364 -NVLEPAEYRKMFDRLSVFPP---------SAH-IPTILLSLIWFDVI---KSDVMVVVN 409

Query: 315 KLSN--VLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEP-------ESAPRKRGRK 365
           KL    ++E+    E + SI       P     L+ VK E E        +     +   
Sbjct: 410 KLHKYSLVEK-QPKESTISI-------PSIYLELK-VKLENEYALHRSIVDHYNIPKTFD 460

Query: 366 PNSLM-NPEEGY--------------------------DHSWISSGRKIAKVPGRRKSDD 398
            + L+    + Y                          D  ++   +KI      R    
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKI------RHDST 512

Query: 399 KGVDCSPSLN--QDSKKEALNLTDKMLADPTSASLKSGLPD 437
                   LN  Q  K     + D    DP    L + + D
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN---DPKYERLVNAILD 550

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		827
3p8d_A		67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	97.04
2equ_A		74	PHD finger protein 20-like 1; tudor domain, struct	97.02
1mhn_A		59	SurviVal motor neuron protein; SMN, SMA, spinal mu	96.98
2l8d_A		66	Lamin-B receptor; DNA binding protein; NMR {Gallus	96.96
2dig_A		68	Lamin-B receptor; tudor domain, integral nuclear e	96.92
2g3r_A		123	Tumor suppressor P53-binding protein 1; tandem tud	96.92
4a4f_A		64	SurviVal of motor neuron-related-splicing factor;	96.84
3qii_A		85	PHD finger protein 20; tudor domain, structural ge	96.83
3s6w_A		54	Tudor domain-containing protein 3; methylated argi	96.78
1g5v_A		88	SurviVal motor neuron protein 1; mRNA processing,	96.77
2ldm_A		81	Uncharacterized protein; PHF20, tudor domain, epig	95.27
1ssf_A		156	Transformation related protein 53 binding protein	96.26
2d9t_A		78	Tudor domain-containing protein 3; structural geno	96.2
3pnw_C		77	Tudor domain-containing protein 3; FAB, structural	96.14
2eqj_A		66	Metal-response element-binding transcription facto	95.93
4hcz_A		58	PHD finger protein 1; protein-peptide complex, tud	95.01
2eqk_A		85	Tudor domain-containing protein 4; structural geno	93.71
2m0o_A		79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	93.36
3fdr_A		94	Tudor and KH domain-containing protein; TDRD2, str	92.35
2xk0_A		69	Polycomb protein PCL; transcription, aromatic CAGE	90.78
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	90.56
2wac_A		218	CG7008-PA; unknown function, tudor, beta-barrel, n	90.53
2e5p_A		68	Protein PHF1, PHD finger protein 1; tudor domain,	90.12
2diq_A		110	Tudor and KH domain-containing protein; tudor doma	90.01
2e5q_A		63	PHD finger protein 19; tudor domain, isoform B, st	88.2
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	87.57
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	85.5
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	85.38
3oc3_A		800	Helicase MOT1, MOT1; regulation of transcription,	85.35
3ntk_A		169	Maternal protein tudor; tudor domain, OB-fold, GER	84.77
3dlm_A		213	Histone-lysine N-methyltransferase setdb1; setdb1_	82.8
4b9w_A		201	TDRD1, tudor domain-containing protein 1; replicat	82.74
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	81.91
1qgr_A		876	Protein (importin beta subunit); transport recepto	81.39
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	80.91
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	80.4
4b9x_A		226	TDRD1, tudor domain-containing protein 1; replicat	80.38

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}	Back alignment and structure

Probab=97.04  E-value=0.0011  Score=56.79  Aligned_cols=44  Identities=16%  Similarity=0.286  Sum_probs=40.1

Q ss_pred             cccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccCCCeeeeecC
Q 003359          712 LVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK  757 (827)
Q Consensus       712 lVG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDDGD~E~L~L~  757 (827)
                      .||-+|.--| .|..||+|+|++.+.. +...|.|+||..|.|.+.
T Consensus         8 ~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~   51 (67)
T 3p8d_A            8 QINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHI   51 (67)
T ss_dssp             CTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGG
T ss_pred             ccCCEEEEEc-CCCCEeeEEEEEECCC-CeEEEEEeCCceEEEeHH
Confidence            4899999999 9999999999999997 679999999999988764

PyMOL of 3p8d

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*	Back alignment and structure

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}	Back alignment and structure

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1	Back alignment and structure

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A	Back alignment and structure

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*	Back alignment and structure

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}	Back alignment and structure

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*	Back alignment and structure

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1	Back alignment and structure

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}	Back alignment and structure

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1	Back alignment and structure

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1	Back alignment and structure

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}	Back alignment and structure

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}	Back alignment and structure

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}	Back alignment and structure

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}	Back alignment and structure

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1	Back alignment and structure

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1	Back alignment and structure

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}	Back alignment and structure

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*	Back alignment and structure

>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}	Back alignment and structure

>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		827
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.003

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 36/263 (13%), Positives = 76/263 (28%), Gaps = 39/263 (14%)

Query: 11  EEQLKDAGN----------LLLNPPSPVDEV-----INLLDKVEHLLANVEQAPSRSMRD 55
           +++L+              +L    S  +       + L + V+    N     +  ++ 
Sbjct: 32  QQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 91

Query: 56  ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115
             L         + +  S   +R +V   I+ I            +L+ +   L  S   
Sbjct: 92  ECL---------NNIGDSSPLIRATVGILITTIASKGELQ--NWPDLLPKLCSLLDSEDY 140

Query: 116 NLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAA 175
           N           A   L  + +  + +L  D+  D+ +  M   FL+  + + P     A
Sbjct: 141 NTCEG-------AFGALQKICEDSAEILDSDVL-DRPLNIMIPKFLQFFKHSSPKIRSHA 192

Query: 176 METIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA----KLKTN 231
           +   +   I          +     ++     D  P   K   +           +L  +
Sbjct: 193 VAC-VNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 251

Query: 232 LKEAVQSRGIALDDYAEIVACIC 254
           +   V+       D  E VA   
Sbjct: 252 MHNIVEYMLQRTQDQDENVALEA 274

PyMOL of d1qbkb_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		827
d2d9ta1		60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	96.98
d1mhna_		59	Survival motor neuron protein 1, smn {Human (Homo	96.71
d2diga1		55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	96.24
d2g3ra1		53	p53-binding protein 1, 53BP1 {Human (Homo sapiens)	94.36
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	93.94
d2diqa1		97	Tudor and KH domain-containing protein TDRKH {Huma	92.64
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	88.63
d2hqxa1		90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	88.56
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	88.25
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	87.14
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	80.46

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.98  E-value=0.00067  Score=53.96  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             ccCeEEEeeCCCCceEEEEEEEecCCCCeEEEEccC-CCeeeeecC
Q 003359          713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK  757 (827)
Q Consensus       713 VG~RVkV~WP~D~~wY~G~V~sYd~~tkkH~V~YDD-GD~E~L~L~  757 (827)
                      ||..+-..|+.|+.||.|+|...++..+...|.|.| |..|.+.+.
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~   50 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS   50 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHH
Confidence            789999999999999999999999988889999988 999998765

PyMOL of d2d9ta1

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure