Citrus Sinensis ID: 003374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-----
MADNRNGNAQMANGTGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYSFNEDEEEEERPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKTWAELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGPPSGGFPKRTKLR
ccccccccccccccccccccEEEcHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccccEEEEEEccEEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHccccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEccccccccccccccEEEEEccccEEEEEEccccccEEEEEEEEccccccccccEEEEEEEEccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccccccccccEEEEccccccccccccEEEEEEccEEEEccccccEEEEEEccccEEccccccccEEEEEEEEEcccEEEccEEccccccEEEEccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccEEEEEEcccccEEEEcccccEEEcccEEEEEEEEEccccccEEEEEEEccccccEEEEEEcccccHHHHHHHHHcccEEEEEccccccHHHHHHHHHccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccc
ccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHcccHHcccccEEEEEEccccccccccHHHHHHHHHHccccccEEEEEEccEEEEEEcHHHHHHHHHHHccccccccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHcccccEEcHHHHHHHHHcccccHHHHHHHHHccccEEEEEccccHHHcccccccccccccHHccHHcHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccccccccccccEEEEEccccEEEEEEccccccEEEEEEEEEccccccccEEEEEEEEEcccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHcHEEEEcccccccEcccEEEEcccccccccccEEEEEEcccEEEEcccccccEEEEEHccHEEEEccccccEEEEEEEEccccEEEcccccEEEEEEEEEEEcEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccHHHccccccccccEEEEEcccccEEEEcccccEEEEcccEEEEEEEEEEEcccccEEEEEEEccccccEEEEEccHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHccHHHHHHccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccHHHHHHHHHHHHHHcccccccccHHHHHccccccccccccccccccccccc
madnrngnaqmangtgganaYSINLENFSTRLKALYSHWNkhksdywgsadvlaiatppasedLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRsakdavgaDVVIHVKAKTDDGVELMDAIFNAVRsqsnvdsgdgpivgsiaretpegrLLETWADRLqnsgfqlsDVTNGLSELFAVKDQEEIMNVKKAAVKDVAysfnedeeeeerpkvkaeangtealpskttlrsdnqEISKEELRRQHQAELARQKNEetgrrlagggsgagdnrasakttTDLIAYKnvndllpprdlmiqIDQKneavlfpiygsmvPFHVATIRTVssqqdtnrnCYIRIIfnvpgtpfnphdtnslkhQGAIYlkevsfrskdprhigEVVGAIKTLRRQVMARESERAERATLVTQEKLQLagnrfkpiklhdlwirpvfggrgrkipgtlEAHLNgfrfatsrpeervDIMFgnikhaffqpaEKEMITLVHFHLHnhimvgnkktkdVQFYVEVMDVVQtlgggkrsaydpdeIEEEQRERARKNKINMDFQSFVNRvndlwgqpkfngldlefdqplrdlgfhgvphkasafivptssclvelietpflVVTLGEIEIVNLervglgqknfdmTIVFKdfkkdvlridsipsssldSIKEWLDTTDIKYYESRLNLNWRQILKTitddpqsfiddggweflnleasdsesenseesdqgyepsdmevdsvtededsdseslvesedeeeedseedseeeKGKTWAELEREATnadrekgddsdseEERKRrkgktfgksrgppsggfpkrtklr
madnrngnaqmangtGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSakdavgadvVIHVKAKTDDGVELMDAIFNAVrsqsnvdsgdgpivGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYsfnedeeeeerpkvkaeangtealpskttlrsdnQEISKEELRRQHQAElarqkneetgrrlagggsgagdnrasaKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEvsfrskdprhigevvgaikTLRRQVMAREseraeratlvtqeklqlagnrfkpiklhdlwirpVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQtlgggkrsaydpdeIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNlervglgqknfDMTIVFKDFKKDVLRidsipsssldsikeWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEasdsesenseesdqgyepsdmevdsvtededsdseslvesedeeeedseedseeekgktwaelereatnadrekgddsdseeerkrrkgktfgksrgppsggfpkrtklr
MADNRNGNAQMANGTGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYSFNedeeeeeRPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETgrrlagggsgagdnrasaKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRidsipsssldsiKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFlnleasdsesenseesdQGYEPsdmevdsvtededsdseslvesedeeeedseedseeeKGKTWAELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGPPSGGFPKRTKLR
******************NAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVR**********************GRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVK***********************************************************************************TDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQV***********TLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLG*************************NMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNL***************************************************************************************************************
***********************NLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKR***DAVGADVVIHVKAK*****ELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAY********************************************************************************************PPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVP**************QGAIYLKEVSFRSKDPRHIGEVVGAIKTL*****************************FKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDV*****************************INMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWE*******************************************************************************************************************
*********QMANGTGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYS********************EALPSKTTLR*******************************************SAKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKR***************ARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLE************************************************************AELERE********************************************
******************NAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYSFNEDE*********************************EELRRQHQAELARQKNEETGRRLAGGGSGAG*NRASAKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTL***KRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFL**********************************************************************TN*****************************************
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MADNRNGNAQMANGTGGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKKAAVKDVAYSFNEDEEEEERPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGKTWAELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGPPSGGFPKRTKLR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query825 2.2.26 [Sep-21-2011]
O824911074 FACT complex subunit SPT1 yes no 0.762 0.585 0.772 0.0
Q8H6B11055 FACT complex subunit SPT1 N/A no 0.733 0.573 0.760 0.0
Q7X9231056 FACT complex subunit SPT1 yes no 0.740 0.578 0.773 0.0
Q9Y5B91047 FACT complex subunit SPT1 yes no 0.633 0.499 0.406 1e-106
Q920B91047 FACT complex subunit SPT1 yes no 0.633 0.499 0.404 1e-106
Q9W6031035 FACT complex subunit SPT1 N/A no 0.672 0.536 0.391 1e-103
Q2UBF11042 FACT complex subunit spt1 yes no 0.695 0.550 0.392 1e-102
Q8IRG61083 FACT complex subunit spt1 yes no 0.677 0.516 0.395 1e-100
Q9N5R91030 FACT complex subunit spt- yes no 0.715 0.572 0.368 1e-99
Q4WJ021019 FACT complex subunit spt1 yes no 0.694 0.562 0.381 7e-98
>sp|O82491|SPT16_ARATH FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1 Back     alignment and function desciption
 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/638 (77%), Positives = 560/638 (87%), Gaps = 9/638 (1%)

Query: 175  RLQNSGFQLSDVTNGLSELFAVKDQE-EIMNVKKAAVKDVAYSFNEDEEEEERPKVKAEA 233
            R +N  F L      L++   V DQ+ E++     +VKDVAYSF EDEEEE +P+ KA  
Sbjct: 422  RSKNKKFSLL-----LADTVLVTDQKPELLTKCSKSVKDVAYSFKEDEEEE-KPRKKART 475

Query: 234  NGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKT 293
            +G+E   +KT LRSD+  +SKEELR+QHQAELARQKNEET RRLAG  SGAGD+R++AKT
Sbjct: 476  SGSENYITKTALRSDDHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKT 535

Query: 294  TTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCY 353
            + D++AYKNVND+ P ++LMIQ+D +NEAVL PIYGS+VPFHVATIRTVS  QDTNRNCY
Sbjct: 536  SADVVAYKNVNDM-PHKELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCY 594

Query: 354  IRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARES 413
            IRIIFNVPGTPFNPHD+NSLK+QGAIYLKEVSFR+KD RH  EV   IKTLRRQVMARES
Sbjct: 595  IRIIFNVPGTPFNPHDSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARES 654

Query: 414  ERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRP 473
            ERAERATLVTQEKLQLAGN+FKP++L +LWIRP F GR +KIPGTLEAH NGFR++T+RP
Sbjct: 655  ERAERATLVTQEKLQLAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRP 713

Query: 474  EERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG 533
            +ERVD++F NIKHAFFQPAEKEMITL+HFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGG
Sbjct: 714  DERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGG 773

Query: 534  GKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGF 593
            G+RSAYDPDEI+EEQRER RKNKINMDF  F NRVND+W  P+F  LDLEFDQPLR+LGF
Sbjct: 774  GRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGF 833

Query: 594  HGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKK 653
            HGVPHK SAFI+PTSSCLVELIE PFLVV+L EIEIVNLERVG GQKNFDM I+FKDFKK
Sbjct: 834  HGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKK 893

Query: 654  DVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLN 713
            DVLR+DS+P+SSL+ IKEWLDTTDIKYYES+LNLNWRQILKTITDDPQSFIDDGGWEFLN
Sbjct: 894  DVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLN 953

Query: 714  LEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEKGK 773
            L+ SDSES  SEESD+GYEPSD+EV+S +EDE S+SESLVES+D+EEEDSE++SEEEKGK
Sbjct: 954  LDGSDSESGGSEESDKGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGK 1013

Query: 774  TWAELEREATNADREKGDDSDSEEERKRRKGKTFGKSR 811
            TW ELEREATNADRE G +SDSEEERKRRK K FGKSR
Sbjct: 1014 TWDELEREATNADREHGVESDSEEERKRRKMKAFGKSR 1051
Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8H6B1|SPT16_MAIZE FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1 Back     alignment and function description
>sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1 Back     alignment and function description
>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2 Back     alignment and function description
>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2 Back     alignment and function description
>sp|Q2UBF1|SPT16_ASPOR FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=spt16 PE=3 SV=1 Back     alignment and function description
>sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1 SV=2 Back     alignment and function description
>sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1 Back     alignment and function description
>sp|Q4WJ02|SPT16_ASPFU FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query825
359487575 1071 PREDICTED: FACT complex subunit SPT16-li 0.783 0.603 0.801 0.0
224122844 1082 global transcription factor group [Popul 0.752 0.573 0.860 0.0
356569402 1064 PREDICTED: FACT complex subunit SPT16-li 0.761 0.590 0.822 0.0
449433555 1073 PREDICTED: FACT complex subunit SPT16-li 0.790 0.607 0.823 0.0
449490603 1073 PREDICTED: LOW QUALITY PROTEIN: FACT com 0.790 0.607 0.823 0.0
224124374 1065 global transcription factor group [Popul 0.770 0.597 0.848 0.0
147775766 1083 hypothetical protein VITISV_017317 [Viti 0.745 0.567 0.829 0.0
225450478 1083 PREDICTED: FACT complex subunit SPT16-li 0.745 0.567 0.827 0.0
255543004 1098 FACT complex subunit SPT16, putative [Ri 0.746 0.561 0.805 0.0
255585247 1050 FACT complex subunit SPT16, putative [Ri 0.746 0.586 0.828 0.0
>gi|359487575|ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/664 (80%), Positives = 589/664 (88%), Gaps = 18/664 (2%)

Query: 180  GFQ--LSDVTNGLSELFAV----------KDQEEIMNVKKAAVKDVAYSFNEDEEEEE-- 225
            GFQ   +D  N  ++ F+V          K  E + ++   AVKDVAYSFNED++EEE  
Sbjct: 408  GFQNLQTDTNNPKTQKFSVLLADSVIVGEKGPEVVTSISSKAVKDVAYSFNEDDDEEEEE 467

Query: 226  RPKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAG 285
            RPKVK EANG EA+ SK TLRSDNQE+SKEELRRQHQAELARQKNEET RRLAGGGSGAG
Sbjct: 468  RPKVKPEANGGEAVSSKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGGGSGAG 527

Query: 286  DNRASAKTTTDLIAYKNVNDLLPPRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQ 345
            DNR + K T DLIAYKNVNDL PP++LMIQ+DQKNEA+L PIYGSMVPFHVAT+++VSSQ
Sbjct: 528  DNRGAVKATGDLIAYKNVNDLPPPKELMIQVDQKNEAILLPIYGSMVPFHVATVKSVSSQ 587

Query: 346  QDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLR 405
            QDTNR CYIRIIFNVPGTPF+PHD+NS+K QG+IYLKEVSFRSKDPRHI EVV  IKTLR
Sbjct: 588  QDTNRTCYIRIIFNVPGTPFSPHDSNSMKFQGSIYLKEVSFRSKDPRHISEVVQMIKTLR 647

Query: 406  RQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNG 465
            RQV +RESERAERATLVTQEKLQLAG RFKPI+L DLWIRP FGGRGRK+ G+LE+H NG
Sbjct: 648  RQVASRESERAERATLVTQEKLQLAGTRFKPIRLSDLWIRPSFGGRGRKLTGSLESHTNG 707

Query: 466  FRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVM 525
            FR++TSRP+ERVDIM+GNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQF+VEVM
Sbjct: 708  FRYSTSRPDERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFFVEVM 767

Query: 526  DVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFD 585
            DVVQTLGGGKRSAYDPDEIEEEQRER RKNKINMDFQ+FVNRVNDLWGQP+F GLDLEFD
Sbjct: 768  DVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFKGLDLEFD 827

Query: 586  QPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMT 645
            QPLR+LGFHGVPHKASAFIVPTSSCLVELIETPFLV+TL EIEIVNLERVGLGQKNFDMT
Sbjct: 828  QPLRELGFHGVPHKASAFIVPTSSCLVELIETPFLVITLSEIEIVNLERVGLGQKNFDMT 887

Query: 646  IVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFID 705
            IVFKDFK+DVLRIDSIPS+SLD IKEWLDTTD+KYYESRLNLNWR ILKTIT+DP+ FI+
Sbjct: 888  IVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITEDPEKFIE 947

Query: 706  DGGWEFLNLEASDSESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEE 765
            DGGWEFLNLE SDS+SENS+ESDQGYEPSD++ D+ +E+E  DSESLVESED+ EEDS+ 
Sbjct: 948  DGGWEFLNLEVSDSDSENSQESDQGYEPSDVQSDTGSEEEGDDSESLVESEDDVEEDSDG 1007

Query: 766  DSEEEKGKTWAELEREATNADREKGDDSDSEEERKRRKGKTFGKSRGP----PSGGFPKR 821
            DSEEE+GKTW ELEREA+NADREKGD+SDSEEERKRRK K FGK+R P      G  PKR
Sbjct: 1008 DSEEEQGKTWEELEREASNADREKGDESDSEEERKRRKMKAFGKARVPEKRSTRGSLPKR 1067

Query: 822  TKLR 825
             KLR
Sbjct: 1068 PKLR 1071

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122844|ref|XP_002318930.1| global transcription factor group [Populus trichocarpa] gi|222857306|gb|EEE94853.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356569402|ref|XP_003552890.1| PREDICTED: FACT complex subunit SPT16-like [Glycine max] Back     alignment and taxonomy information
>gi|449433555|ref|XP_004134563.1| PREDICTED: FACT complex subunit SPT16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490603|ref|XP_004158653.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SPT16-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224124374|ref|XP_002330007.1| global transcription factor group [Populus trichocarpa] gi|222871432|gb|EEF08563.1| global transcription factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147775766|emb|CAN64798.1| hypothetical protein VITISV_017317 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225450478|ref|XP_002280582.1| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255543004|ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinus communis] gi|223548526|gb|EEF50017.1| FACT complex subunit SPT16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255585247|ref|XP_002533325.1| FACT complex subunit SPT16, putative [Ricinus communis] gi|223526847|gb|EEF29061.1| FACT complex subunit SPT16, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query825
TAIR|locus:21327561074 SPT16 "global transcription fa 0.757 0.581 0.678 2.7e-299
TAIR|locus:2139217343 GTC2 [Arabidopsis thaliana (ta 0.406 0.976 0.708 1.4e-126
ZFIN|ZDB-GENE-031118-961077 supt16h "suppressor of Ty 16 h 0.6 0.459 0.368 9.3e-117
RGD|13100321047 Supt16h "suppressor of Ty 16 h 0.595 0.468 0.382 1.9e-116
MGI|MGI:18909481047 Supt16 "suppressor of Ty 16" [ 0.595 0.468 0.380 3.1e-116
UNIPROTKB|E1BNP81047 SUPT16H "Uncharacterized prote 0.595 0.468 0.382 6.5e-116
UNIPROTKB|E2REU71047 SUPT16H "Uncharacterized prote 0.595 0.468 0.382 1e-115
UNIPROTKB|Q9Y5B91047 SUPT16H "FACT complex subunit 0.595 0.468 0.382 1e-115
UNIPROTKB|F1S8K51048 SUPT16H "Uncharacterized prote 0.595 0.468 0.381 2.8e-115
DICTYBASE|DDB_G02826771072 spt16 "FACT complex subunit SP 0.601 0.462 0.371 1.5e-110
TAIR|locus:2132756 SPT16 "global transcription factor C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2185 (774.2 bits), Expect = 2.7e-299, Sum P(2) = 2.7e-299
 Identities = 427/629 (67%), Positives = 477/629 (75%)

Query:   190 LSELFAVKDQE-EIMNVKKAAVKDVAYSFNXXXXXXXRPKVKAEANGTEALPSKTTLRSD 248
             L++   V DQ+ E++     +VKDVAYSF        +P+ KA  +G+E   +KT LRSD
Sbjct:   432 LADTVLVTDQKPELLTKCSKSVKDVAYSFKEDEEEE-KPRKKARTSGSENYITKTALRSD 490

Query:   249 NQEISKEELRRQHQAELARQKNEETXXXXXXXXXXXXXXXXXXKTTTDLIAYKNVNDLLP 308
             +  +SKEELR+QHQAELARQKNEET                  KT+ D++AYKNVND+ P
Sbjct:   491 DHVVSKEELRKQHQAELARQKNEETARRLAGDSSGAGDSRSTAKTSADVVAYKNVNDM-P 549

Query:   309 PRDLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPH 368
              ++LMIQ+D +NEAVL PIYGS+VPFHVATIRTVS  QDTNRNCYIRIIFNVPGTPFNPH
Sbjct:   550 HKELMIQVDTRNEAVLLPIYGSLVPFHVATIRTVSGNQDTNRNCYIRIIFNVPGTPFNPH 609

Query:   369 DTNSLKHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQ 428
             D+NSLK+QGAIYLKEVSFR+KD RH  EV   IKTLRRQVMARESERAERATLVTQEKLQ
Sbjct:   610 DSNSLKNQGAIYLKEVSFRTKDSRHSSEVTQQIKTLRRQVMARESERAERATLVTQEKLQ 669

Query:   429 LAGNRFKPIKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAF 488
             LAGN+FKP++L +LWIRP F GR +KIPGTLEAH NGFR++T+RP+ERVD++F NIKHAF
Sbjct:   670 LAGNKFKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAF 728

Query:   489 FQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQ 548
             FQPAEKEMITL+HFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+RSAYDPDEI+EEQ
Sbjct:   729 FQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQ 788

Query:   549 RERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTS 608
             RER RKNKINMDF  F NRVND+W  P+F  LDLEFDQPLR+LGFHGVPHK SAFI+PTS
Sbjct:   789 RERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTS 848

Query:   609 SCLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRXXXXXXXXXXX 668
             SCLVELIE PFLVV+L EIEIVNLERVG GQKNFDM I+FKDFKKDVLR           
Sbjct:   849 SCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEG 908

Query:   669 XKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFXXXXXXXXXXXXXXXXX 728
              KEWLDTTDIKYYES+LNLNWRQILKTITDDPQSFIDDGGWEF                 
Sbjct:   909 IKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDGSDSESGGSEESD 968

Query:   729 QGYEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKTWAELEREATNADRE 788
             +GYEP                                     KGKTW ELEREATNADRE
Sbjct:   969 KGYEPSDVEVESESEDEASESESLVESDDDEEEDSEQESEEEKGKTWDELEREATNADRE 1028

Query:   789 KGDDSDSEEERKRRKGKTFGKSRGPPSGG 817
              G +SDSEEERKRRK K FGKSR   SGG
Sbjct:  1029 HGVESDSEEERKRRKMKAFGKSRPGTSGG 1057
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009987 "cellular process" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0035101 "FACT complex" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0005829 "cytosol" evidence=RCA
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2139217 GTC2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-96 supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310032 Supt16h "suppressor of Ty 16 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890948 Supt16 "suppressor of Ty 16" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNP8 SUPT16H "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2REU7 SUPT16H "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5B9 SUPT16H "FACT complex subunit SPT16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S8K5 SUPT16H "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282677 spt16 "FACT complex subunit SPT16" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7X923SPT16_ORYSJNo assigned EC number0.77330.74060.5785yesno
O82491SPT16_ARATHNo assigned EC number0.77270.76240.5856yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GTC903
global transcription factor group (1082 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query825
COG54061001 COG5406, COG5406, Nucleosome binding factor SPN, S 1e-125
pfam08644152 pfam08644, SPT16, FACT complex subunit (SPT16/CDC6 2e-65
pfam0851293 pfam08512, Rtt106, Histone chaperone Rttp106-like 4e-27
COG5406 1001 COG5406, COG5406, Nucleosome binding factor SPN, S 1e-18
pfam05285 317 pfam05285, SDA1, SDA1 2e-05
pfam04147 809 pfam04147, Nop14, Nop14-like family 3e-05
pfam03344 715 pfam03344, Daxx, Daxx Family 3e-05
pfam04147 809 pfam04147, Nop14, Nop14-like family 6e-05
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 2e-04
pfam09073 424 pfam09073, BUD22, BUD22 7e-04
pfam04889241 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont 0.002
COG5129303 COG5129, MAK16, Nuclear protein with HMG-like acid 0.002
TIGR00600 1034 TIGR00600, rad2, DNA excision repair protein (rad2 0.003
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information 
 Score =  401 bits (1032), Expect = e-125
 Identities = 218/591 (36%), Positives = 329/591 (55%), Gaps = 28/591 (4%)

Query: 209 AVKDVAYSFNEDEEEEER--PKVKAEANGTEALPS-KTTLRSDNQ--EISKEELRRQHQA 263
           A  D+++ F ED+E  E    + KA     + + S ++  R + +  E++  + R +HQ 
Sbjct: 421 AQGDISFLFGEDDETPEYLTLQDKAPDFLDKTISSHRSKFRDETREHELNARKKRVEHQK 480

Query: 264 ELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVNDLLPP--RDLMIQIDQKNE 321
           EL  +  EE   R     S AG +    K+   + +Y   +  LP    +L I +D   +
Sbjct: 481 ELLDKIIEEGLERFRNA-SDAGPDSIEEKSEKRIESYSR-DSQLPRQIGELRIIVDFARQ 538

Query: 322 AVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSLKHQGAIYL 381
           +++ PI G  VPFH+++I+  S   + N   Y+R+ F  PG      +    + +G  +L
Sbjct: 539 SIILPIGGRPVPFHISSIKNASKNDEGNFV-YLRLNFKSPGKGGGKTEELPCEQRGEQFL 597

Query: 382 KEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHD 441
           + ++ RS     + ++   I  L++    RE+ER E A ++ Q+KL       +      
Sbjct: 598 RSITSRSIRGNRMSDLFKEINDLKKGATKRETERKEDADVLEQDKLIERKLS-RTDVYMK 656

Query: 442 LWIRPVFGGRGRKIPGTLEAHLNGFRFATS-RPEERVDIMFGNIKHAFFQPAEKEMITLV 500
             +RP  G  G++ PG LE H NG RF +  R +  +DI+F NIKH FFQ    E+I ++
Sbjct: 657 TDVRP--GSDGKRKPGNLEIHENGIRFQSPLRSDSHIDILFSNIKHLFFQECNGELIVII 714

Query: 501 HFHLHNHIMVGNKKTKDVQFYVEVMD--VVQTLGGGKRSAY-DPDEIEEEQRERARKNKI 557
           HFHL + I+ G +K +DVQFY E  D  V +T   G++  Y D DE+E+EQ ER R+  +
Sbjct: 715 HFHLKSPILTGKRKVQDVQFYREASDTMVDETGKRGRKEHYGDEDELEQEQEERRRRAAL 774

Query: 558 NMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIET 617
           + +F+SF + + +        G  +EF    R LGF+GVP ++S  I PT+ CLV+L E 
Sbjct: 775 DQEFKSFASSIAE-----ASEGR-IEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEA 828

Query: 618 PFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTD 677
           PF V+TL E+EIVNLERV  G KNFD+  + +DF + ++ I+++P  SLD +KEWLD+ D
Sbjct: 829 PFFVITLEEVEIVNLERVQFGLKNFDVVFILRDFYRPLVHINTVPVESLDKLKEWLDSND 888

Query: 678 IKYYESRLNLNWRQILKTITDDPQSFIDDGGWEFLNLEASDSESENSEESDQGYEPSDME 737
           I + E+  NLNW  I+K+I  DP SF +DGGW FL +  SD ES+ SEE    YE S   
Sbjct: 889 ILFMETSANLNWNTIMKSIMKDPISFFEDGGWSFL-MVGSDDESDESEEEVSEYEASS-- 945

Query: 738 VDSVTEDEDSDSESLVESEDEEEEDSEEDSE-EEKGKTWAELEREATNADR 787
            D  +++ D D ES   SED  E++SE DS  EE G+ W ELE +A    R
Sbjct: 946 -DDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995

Length = 1001
>gnl|CDD|219951 pfam08644, SPT16, FACT complex subunit (SPT16/CDC68) Back     alignment and domain information
>gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like Back     alignment and domain information
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|220102 pfam09073, BUD22, BUD22 Back     alignment and domain information
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein Back     alignment and domain information
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region [General function prediction only] Back     alignment and domain information
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 825
KOG1189960 consensus Global transcriptional regulator, cell d 100.0
COG54061001 Nucleosome binding factor SPN, SPT16 subunit [Tran 100.0
PF08644152 SPT16: FACT complex subunit (SPT16/CDC68); InterPr 100.0
PF14826163 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-term 100.0
KOG0526615 consensus Nucleosome-binding factor SPN, POB3 subu 100.0
COG5165508 POB3 Nucleosome-binding factor SPN, POB3 subunit [ 99.97
PF0851295 Rtt106: Histone chaperone Rttp106-like; InterPro: 99.89
PF03531222 SSrecog: Structure-specific recognition protein (S 99.34
PRK09795361 aminopeptidase; Provisional 96.21
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 95.98
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 95.38
KOG18321516 consensus HIV-1 Vpr-binding protein [Cell cycle co 94.95
PF05764 240 YL1: YL1 nuclear protein; InterPro: IPR008895 The 94.42
KOG3064303 consensus RNA-binding nuclear protein (MAK16) cont 94.06
PRK10879438 proline aminopeptidase P II; Provisional 92.72
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 92.45
KOG1189 960 consensus Global transcriptional regulator, cell d 91.8
PF01321132 Creatinase_N: Creatinase/Prolidase N-terminal doma 91.2
PF10446 458 DUF2457: Protein of unknown function (DUF2457); In 90.92
PF04147 840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 88.84
TIGR02993391 ectoine_eutD ectoine utilization protein EutD. Mem 86.96
PRK14575406 putative peptidase; Provisional 86.62
PHA02664534 hypothetical protein; Provisional 86.43
PF1310445 DUF3956: Protein of unknown function (DUF3956) 83.33
PF04147 840 Nop14: Nop14-like family ; InterPro: IPR007276 Emg 82.01
KOG3064303 consensus RNA-binding nuclear protein (MAK16) cont 81.5
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-217  Score=1806.59  Aligned_cols=714  Identities=49%  Similarity=0.813  Sum_probs=652.2

Q ss_pred             EEEcCCCCccccchhhhhhhHhhcCCcccceeeEeecCeEEEEechhhhhhhhhhhcc---CCCCccEEEEEeecCCCCC
Q 003374           54 AIATPPASEDLRYLKSSALNIWLLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRS---AKDAVGADVVIHVKAKTDD  130 (825)
Q Consensus        54 ~i~~G~~~ed~~Y~KStaLq~WLlGYEFpdTlivftk~~i~~LtS~KKa~~Le~l~~~---~~~~~~Veilvr~Kd~~~n  130 (825)
                      +|++|+++++++|+||+|||+||||||||+||||||+++||||||.+||+||+.+++.   .++.+.|.+|+|.|  ++.
T Consensus         1 ~v~~G~s~dd~~Y~KssAL~~WLlGYEfpdTilv~~~~~i~iltSkkKa~~l~~~~~~~~~~~~~~~v~llvR~k--~d~   78 (960)
T KOG1189|consen    1 AVVVGVSEDDNPYQKSSALFTWLLGYEFPDTILVLCKDKIYILTSKKKAEFLQKVTNLAQSSEGKPTVNLLVRDK--NDD   78 (960)
T ss_pred             CeeecccccccchhHHHHHHHHHhccccCceEEEEecCcEEEEecchhHHHHHhhcccccCcccCcceEEEeccc--Ccc
Confidence            5789999999999999999999999999999999999999999999999999997642   45678899999943  444


Q ss_pred             hHHHHHHHHHHHhccCCCCCCCCCeEEEeeCCCCCCchHHHHHHHHhccCCceeccchhhHhHhhccChhhhhceee---
Q 003374          131 GVELMDAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWADRLQNSGFQLSDVTNGLSELFAVKDQEEIMNVKK---  207 (825)
Q Consensus       131 ~~~~fekli~~ik~~~~~~s~~g~kVGvl~Kdk~~G~F~~~W~~~l~~~~~e~VDVS~~iS~llavKDe~Ei~~ikk---  207 (825)
                      ++++|++||++|+       ++|++||+|.||+++|+||.+|+++|++++|+.||||.|||++|||||++||.+||+   
T Consensus        79 n~~~fdkii~~ik-------~~gk~vGvf~ke~~~G~F~~~W~~~l~~~~fn~vDis~~ls~l~avKDd~Ei~~irksa~  151 (960)
T KOG1189|consen   79 NKGLFDKIIKAIK-------SAGKKVGVFAKEKFQGEFMESWNKRLEAGGFNKVDISLGLSKLFAVKDDEEIANIRKSAA  151 (960)
T ss_pred             ccccHHHHHHHHH-------hcCCeeeeecccccchhHHHHHHHHhhhcCCceeehhhhhhhheeeccHHHHHHHHHHHH
Confidence            4599999999999       589999999999999999999999999999999999999999999999999999999   


Q ss_pred             --------------------------------------------------------------------------------
Q 003374          208 --------------------------------------------------------------------------------  207 (825)
Q Consensus       208 --------------------------------------------------------------------------------  207 (825)
                                                                                                      
T Consensus       152 ~s~~vm~k~~~~~~~~aiD~ekkvthskLsD~~e~~I~~~k~s~~l~~~~~d~cY~PIiqSGg~ydlk~sa~s~~~~L~~  231 (960)
T KOG1189|consen  152 ASSAVMNKYLVDELVEAIDEEKKVTHSKLSDLMESAIEDKKYSPGLDPDLLDMCYPPIIQSGGKYDLKPSAVSDDNHLHV  231 (960)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhccccCcccCccccccccChhhhcCCcccccccccccccccce
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 003374          208 --------------------------------------------------------------------------------  207 (825)
Q Consensus       208 --------------------------------------------------------------------------------  207 (825)
                                                                                                      
T Consensus       232 I~cs~G~RynsYCSNv~RT~Lidpssemq~nY~fLl~aqe~il~~lrpG~ki~dVY~~~l~~v~k~~Pel~~~~~k~lG~  311 (960)
T KOG1189|consen  232 ILCSLGIRYNSYCSNVSRTYLIDPSSEMQENYEFLLAAQEEILKLLRPGTKIGDVYEKALDYVEKNKPELVPNFTKNLGF  311 (960)
T ss_pred             EEeeccchhhhhhccccceeeecchHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------cccCceeEEecC
Q 003374          208 --------------------------------------------------------------------AAVKDVAYSFNE  219 (825)
Q Consensus       208 --------------------------------------------------------------------k~~~~i~y~~~d  219 (825)
                                                                                          |+.++|+|+|++
T Consensus       312 ~iGlEFREssl~inaKnd~~lk~gmvFni~lGf~nl~n~~~~~~yaL~l~DTvlv~e~~p~~vLT~~~K~~~dv~~~f~~  391 (960)
T KOG1189|consen  312 GIGLEFRESSLVINAKNDRVLKKGMVFNISLGFSNLTNPESKNSYALLLSDTVLVGEDPPAEVLTDSAKAVKDVSYFFKD  391 (960)
T ss_pred             ccceeeecccccccccchhhhccCcEEEEeeccccccCcccccchhhhccceeeecCCCcchhhcccchhhcccceeecc
Confidence                                                                                899999999998


Q ss_pred             Cccc-cc--c--cccccccCCcccccCcccccCccccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCccccc
Q 003374          220 DEEE-EE--R--PKVKAEANGTEALPSKTTLRSDNQEISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTT  294 (825)
Q Consensus       220 ~~~~-~~--~--~~~~~~~~~~~~i~~~~~lR~~~~~~~~e~~r~~hQ~eL~~~~~~e~~~r~~~~~~~~~~~~~~~k~~  294 (825)
                      ++++ +.  +  ..+.++++.+.++ +..++|++.   ++|++|++||+||++|+++|+++||+++++.   ++.++|..
T Consensus       392 eeeE~~~~~k~~~~~~~~r~~r~a~-l~~k~R~e~---~~ee~RKehQkeLa~qlnee~~~Rls~~s~~---s~~~~ks~  464 (960)
T KOG1189|consen  392 EEEEEELEKKDPATKVLGRGTRTAL-LTDKTRNET---SAEEKRKEHQKELADQLNEEALRRLSNQSGD---SKDEEKSR  464 (960)
T ss_pred             chhhhhhhhccccccccCccccchh-ccccccccc---cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---ccchhhhh
Confidence            7775 22  1  2233466777777 899999998   7999999999999999999999999997655   55666889


Q ss_pred             cceeccCCCCCCCCCC-CceEEEEccCcEEEEeeCCcccceeeeeeeeeeccccCCCeEEEEEEeecCCCCCCCCCCCCc
Q 003374          295 TDLIAYKNVNDLLPPR-DLMIQIDQKNEAVLFPIYGSMVPFHVATIRTVSSQQDTNRNCYIRIIFNVPGTPFNPHDTNSL  373 (825)
Q Consensus       295 ~~~~sYk~~~~~P~~~-~~~I~VD~k~e~vilPI~G~~VPFHI~tIKnvs~~~e~g~~~yLRINF~~Pg~~~~k~~~~~~  373 (825)
                      ++++||+++++||+++ .++||||++++||||||||+||||||+||||+|+++| |+||||||||++||++.|+.+..+|
T Consensus       465 k~~vsYk~~s~mP~~i~el~i~VD~k~esvilPI~g~~VPFHistikn~s~~~e-g~~tYLRinF~~pg~~~g~~e~~~~  543 (960)
T KOG1189|consen  465 KRIVSYKRESQMPREIRELRIYVDKKYESVILPIFGIPVPFHISTIKNASQNVE-GDYTYLRINFNTPGSPGGKNEELPF  543 (960)
T ss_pred             hccccccchhhcchhhhheEEEEecccceEEEeecCcccceehhhhhccccccc-CceeEEEEEecCCCCCCCCCCCCcC
Confidence            9999999999999999 9999999999999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCcCceeEEEEEeeeCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeecCCCcCcccccceeeccCCCCCCc
Q 003374          374 KHQGAIYLKEVSFRSKDPRHIGEVVGAIKTLRRQVMARESERAERATLVTQEKLQLAGNRFKPIKLHDLWIRPVFGGRGR  453 (825)
Q Consensus       374 ~~~~~~fikelt~Rs~d~~~~~~~~~~Ikelkk~~~~re~e~~e~~~~v~QekLi~~~~~~~~~~L~dl~iRP~~~g~~k  453 (825)
                      ++|+|+|||||||||+|++|++++|++||+|||++++||+|+++++++|+||+|++++++++| +|+||||||+|.|  |
T Consensus       544 ~~~~a~flkeit~rs~~~~~~s~~f~~ik~l~k~~~~re~e~~eke~~v~qdkL~~~kn~~~p-~L~dlyiRp~i~~--K  620 (960)
T KOG1189|consen  544 ENPGAQFLKEITFRSSNGKRSSEAFRQIKELQKRFKSREAERKEKEDLVKQDKLIESKNKSNP-KLKDLYIRPNIDT--K  620 (960)
T ss_pred             CCchhhhhhheeeeecCCcchHHHHHHHHHHHHHHHHHHhhhhhhhchhhhhHHHHhhccCCC-chhheEecCCccc--c
Confidence            999999999999999999999999999999999999999999999999999999999999999 9999999999999  9


Q ss_pred             cCCceEEEEeceeeeeeCCCCceEEeeccccceeeeccCCCccEEEEEEEccCceeeCceecceeeeeEEeeeeEEecCC
Q 003374          454 KIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG  533 (825)
Q Consensus       454 r~~G~lE~H~NG~Ry~s~~k~~~idIly~NIKh~FfqP~~~E~ivlihfhLk~PI~~Gkkk~~dvQFy~E~~e~~~dl~~  533 (825)
                      |++|+||+|+|||||+| .|+++|||||+||||||||||++|||+||||||++|||+|+|||.|||||+||++++++|++
T Consensus       621 r~~G~lEaH~NGfRy~s-~R~~~vdiLfsNIKhafFqpc~~Emi~llHfHLknpIm~GkkK~~dVQFY~Ev~div~dlg~  699 (960)
T KOG1189|consen  621 RIPGSLEAHENGFRYQS-LRDERVDILFSNIKHAFFQPCEGEMIILLHFHLKNPIMVGKKKTKDVQFYREVGDIVTDLGK  699 (960)
T ss_pred             ccccceeeecCceeeee-ccccchhhhhhhhhhhhcCccccceeeEeeehhccceeecccceeeeeeeehhhhHHHhhcc
Confidence            99999999999999999 67999999999999999999999999999999999999999999999999999999888777


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCCCceEeccccCCCccCcccceeEeEeeCccccee
Q 003374          534 GKRSAYDPDEIEEEQRERARKNKINMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVE  613 (825)
Q Consensus       534 ~r~~~~D~dEle~Eq~Er~~r~klnk~F~~F~~~v~~~~~~~~~~~~~~~~~iP~r~lgF~Gvp~Ks~v~l~Pt~~cLv~  613 (825)
                      +|+ |+|+|||++||+||++|++||.+|+.||.+|..+.      ...++|++|||+|||+|||||++|+|+||..|||+
T Consensus       700 ~~~-~~D~del~~EQ~Er~rr~~ln~~FksF~~kv~~~~------~~~~efd~pfr~lGF~GvP~rssv~i~pTs~cLV~  772 (960)
T KOG1189|consen  700 RRR-MGDRDELEQEQEERDRRAKLNMAFKSFAEKVAEAT------ESELEFDVPFRELGFNGVPFRSSVFIQPTSSCLVN  772 (960)
T ss_pred             Ccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccceeeccchhhcCcCCCCccceeeeecchhhhhc
Confidence            654 79999999999999999999999999999997743      45689999999999999999999999999999999


Q ss_pred             ccccCceEEecCceeEEEEEeecCCcceeeEEEEEecCCCCeEEEecccCCChHhHHHHhhhcCeEEEecccccChHHHH
Q 003374          614 LIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIKYYESRLNLNWRQIL  693 (825)
Q Consensus       614 l~e~P~~vitl~eIeiV~fERV~~~~knFDmvfvfKd~~~~~~~i~~Ip~~~ld~Ik~wL~s~~I~~~Eg~~nlnW~~im  693 (825)
                      |+|||||||||+|||+|||||||||+|||||+||||||+++|+||++||+++||.||+||++|||+||||++||||++||
T Consensus       773 LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDmvfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~~sLNW~~Im  852 (960)
T KOG1189|consen  773 LTEWPFFVVTLEEVEIVNLERVQFGLKNFDMVFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGVQSLNWTKIM  852 (960)
T ss_pred             cccCCceEEeecceeeeeeeeeeeccccceEEEEeccccccceeeeccchhhhhHHHHhhhcccceeecccccccHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccccccCCCceeccCCCCCC--CCCCCccccCCCCCCCCCCCCCCccCCCCcccccccccCccccCCCCccccc
Q 003374          694 KTITDDPQSFIDDGGWEFLNLEASDS--ESENSEESDQGYEPSDMEVDSVTEDEDSDSESLVESEDEEEEDSEEDSEEEK  771 (825)
Q Consensus       694 ktI~~Dp~~F~~~GGW~fL~~~~~~~--~~~~~ee~d~~ye~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~  771 (825)
                      |||++||++||++|||+||+++++|+  +.+++++++++|+|||+++++++++++++|+   +++++++++++.+|+||+
T Consensus       853 KTI~dDP~~Ffe~GgW~fL~~~~sdsee~~~ese~e~~~y~psd~~v~~eS~ed~e~sE---~s~~de~~de~~~sdEE~  929 (960)
T KOG1189|consen  853 KTITDDPIAFFEDGGWSFLNVESSDSEEGGDESEEEDSAYEPSDDDVSDESDEDEEESE---ESEEDEEDDEDLESDEES  929 (960)
T ss_pred             hhhccCHHHHHhcCCeeeecCCCCcccccccccccccccCCccccCccccccccccccc---cccccccccccccchhhh
Confidence            99999999999999999999987543  3355666799999998877665444333222   222222223334457899


Q ss_pred             CCChHHHHHHHHHHhhccCCCCCchHH
Q 003374          772 GKTWAELEREATNADREKGDDSDSEEE  798 (825)
Q Consensus       772 g~dWdeLE~~A~~~D~~~~~~~~~~~~  798 (825)
                      |+||||||++|+++||+++.+++....
T Consensus       930 gkdwdele~ea~~~dr~~~~~~e~~s~  956 (960)
T KOG1189|consen  930 GKDWDELEREARNADREHGAEEERESE  956 (960)
T ss_pred             ccchhhhHHHHhhcchhhchhhhcchh
Confidence            999999999999999988765544433

>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p Back     alignment and domain information
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A Back     alignment and domain information
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics] Back     alignment and domain information
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] Back     alignment and domain information
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families Back     alignment and domain information
>PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin Back     alignment and domain information
>PRK09795 aminopeptidase; Provisional Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] Back     alignment and domain information
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] Back     alignment and domain information
>PRK10879 proline aminopeptidase P II; Provisional Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3 Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>TIGR02993 ectoine_eutD ectoine utilization protein EutD Back     alignment and domain information
>PRK14575 putative peptidase; Provisional Back     alignment and domain information
>PHA02664 hypothetical protein; Provisional Back     alignment and domain information
>PF13104 DUF3956: Protein of unknown function (DUF3956) Back     alignment and domain information
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [] Back     alignment and domain information
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query825
4ioy_X285 Structure Of The Spt16 Middle Domain Reveals Functi 6e-53
3cb6_A444 Crystal Structure Of The S. Pombe Peptidase Homolog 9e-16
3cb5_A444 Crystal Structure Of The S. Pombe Peptidase Homolog 2e-15
3bip_A467 Crystal Structure Of Yeast Spt16 N-Terminal Domain 2e-09
3bit_A453 Crystal Structure Of Yeast Spt16 N-Terminal Domain 5e-09
>pdb|4IOY|X Chain X, Structure Of The Spt16 Middle Domain Reveals Functional Features Of The Histone Chaperone Fact Length = 285 Back     alignment and structure 
Iteration: 1

 Score =  206 bits (523), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 164/275 (59%), Gaps = 9/275 (3%)
Query: 438 KLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATS-RPEERVDIMFGNIKHAFFQPAEKEM 496
           +L  +++RP      +++P T+  H NG RF +  R + R+DI+F NIK+  FQ  + E+
Sbjct: 13  RLDQIFVRP--NPDTKRVPSTVFIHENGIRFQSPLRTDSRIDILFSNIKNLIFQSCKGEL 70
Query: 497 ITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNK 556
           I ++H HL N I++G KK +DVQFY E  D+     G  R   D DE+E+EQ ER ++  
Sbjct: 71  IVVIHIHLKNPILMGKKKIQDVQFYREASDMSVDETGRFRRYGDEDELEQEQEERRKRAA 130
Query: 557 INMDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIE 616
           ++ +F+ F + + +       NGL L  +   RDLGF GVP++++ F +PT+ CLV+LIE
Sbjct: 131 LDKEFKYFADAIAE-----ASNGL-LTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIE 184
Query: 617 TPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRXXXXXXXXXXXXKEWLDTT 676
            PFLV+ L E+EI  LERV  G KNFDM  V+KDF K V              K+WL   
Sbjct: 185 PPFLVINLEEVEICILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWLTDM 244
Query: 677 DIKYYESRLNLNWRQILKTITDDPQSFIDDGGWEF 711
           DI Y  S +NLNW  I+K++ DDP  F  DGGW F
Sbjct: 245 DIPYTVSTINLNWATIMKSLQDDPYQFFLDGGWNF 279
>pdb|3CB6|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (Form B) Length = 444 Back     alignment and structure
>pdb|3CB5|A Chain A, Crystal Structure Of The S. Pombe Peptidase Homology Domain Of Fact Complex Subunit Spt16 (form A) Length = 444 Back     alignment and structure
>pdb|3BIP|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 467 Back     alignment and structure
>pdb|3BIT|A Chain A, Crystal Structure Of Yeast Spt16 N-Terminal Domain Length = 453 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query825
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 1e-42
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 3e-40
2gcl_A261 Hypothetical 63.0 kDa protein in DAK1-ORC1 interge 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Length = 467 Back     alignment and structure
 Score =  160 bits (407), Expect = 1e-42
 Identities = 62/303 (20%), Positives = 121/303 (39%), Gaps = 18/303 (5%)

Query: 16  GGANAYSINLENFSTRLKALYSHWNKHKSDYWGSADVLAIATPPASEDLRYLKSSALNIW 75
           G     +I+ + F  R++ LYS +N+      GS + L      ++ +  Y K++ L+ W
Sbjct: 1   GHMEELNIDFDVFKKRIELLYSKYNEF----EGSPNSLLFVLGSSNAENPYQKTTILHNW 56

Query: 76  LLGYEFPETVMVFMKKQIQFLCSQKKASLLGMVKRSAKDAVGADVVIHVKAKTDDGVELM 135
           LL YEFP T++  +  ++  + S  KA  L       KD     + + +  + +   EL 
Sbjct: 57  LLSYEFPATLIALVPGKVIIITSSAKAKHLQKAIDLFKDPES-KITLELWQRNNKEPELN 115

Query: 136 DAIFNAVRSQSNVDSGDGPIVGSIARETPEGRLLETWAD----RLQNSGFQLSDVTNGLS 191
             +F+ V +  N     G  VG   +++ +G+ +  W       ++ + F + D++ GLS
Sbjct: 116 KKLFDDVIALIN---SAGKTVGIPEKDSYQGKFMTEWNPVWEAAVKENEFNVIDISLGLS 172

Query: 192 ELFAVKDQEEIMNVKKAAVKDVAYSFNEDEEEEERPKVKAEANGTEALPSKTTLRSDNQE 251
           +++ VKD  E   +  ++    +  F +    E    V  E   T A  S         +
Sbjct: 173 KVWEVKDVNEQAFLSVSS--KGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIEN----K 226

Query: 252 ISKEELRRQHQAELARQKNEETGRRLAGGGSGAGDNRASAKTTTDLIAYKNVNDLLPPRD 311
           I   +  +Q   +L+                       S K     ++ ++ ND L    
Sbjct: 227 IDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQLYGNG 286

Query: 312 LMI 314
            ++
Sbjct: 287 CIL 289
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Length = 444 Back     alignment and structure
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query825
2gcl_A261 Hypothetical 63.0 kDa protein in DAK1-ORC1 interge 99.95
3cb6_A444 FACT complex subunit SPT16; peptidase homology dom 99.59
3biq_A467 FACT complex subunit SPT16; PITA-bread, aminopepti 99.49
3fss_A237 Histone chaperone RTT106; chromosomal protein, nuc 99.09
2iw2_A494 XAA-Pro dipeptidase; metallocarboxypeptidase, dise 98.46
2zsg_A359 Aminopeptidase P, putative; hydrolase; 1.65A {Ther 98.32
3q6d_A356 Proline dipeptidase; structural genomics, csgid, c 98.2
1wn1_A356 Dipeptidase; prolidase, cobalt(II), structural gen 97.75
1wy2_A351 XAA-Pro dipeptidase; structural genomics, prolidas 97.67
4fkc_A377 XAA-Pro aminopeptidase; PITA-bread structure, prol 97.61
1kp0_A402 Creatine amidinohydrolase; alpha betal, 3-layer(AB 97.43
4ege_A378 Dipeptidase PEPE; structural genomics, seattle str 97.27
2v3z_A440 XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proli 96.03
3il0_A131 Aminopeptidase P; XAA-Pro aminopeptidase; structur 95.54
4b28_A470 Metallopeptidase, family M24, putative; lyase, ime 95.52
3ig4_A427 XAA-Pro aminopeptidase; csgid, hydrolase, struct g 95.41
3ovk_A132 Aminopeptidase P, XAA-Pro dipeptidase; structural 93.94
1chm_A401 Creatine amidinohydrolase; creatinase; 1.90A {Pseu 93.74
3pn9_A138 Proline dipeptidase; structural genomics, PSI-2, p 93.53
3ooo_A132 Proline dipeptidase; structural genomics, PSI-2, p 89.43
3o5v_A132 X-Pro dipeptidase; creatinase, N-terminal, PSI, MC 89.05
3i7m_A140 XAA-Pro dipeptidase; structural genomics, APC64794 88.08
3f5r_A191 FACT complex subunit POB3; APC7736, FACT complex ( 88.03
3qoc_A135 Putative metallopeptidase; MCSG, PSI-2, structural 85.08
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Back     alignment and structure
Probab=99.95  E-value=5.4e-28  Score=254.00  Aligned_cols=215  Identities=15%  Similarity=0.288  Sum_probs=168.9

Q ss_pred             ccccceeeccCCCCCCccCCceEEEEeceeeeeeCCCCceEEeeccccceeeeccCCCccEEEEEEEccCceeeCceecc
Q 003374          437 IKLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTK  516 (825)
Q Consensus       437 ~~L~dl~iRP~~~g~~kr~~G~lE~H~NG~Ry~s~~k~~~idIly~NIKh~FfqP~~~E~ivlihfhLk~PI~~Gkkk~~  516 (825)
                      +.+.||.+--. .|   |  =+|++|.+.||+++  ++..|.|.|+||+|+|++|.+++.++.+++.|++||+|||++|+
T Consensus        26 ~~~~dv~~ltP-RG---r--ydi~~~~~~lrl~g--kt~dyki~~~~I~r~f~LP~pd~~~~~~vi~ld~PirqGqt~y~   97 (261)
T 2gcl_A           26 VSFQDVFFTTP-RG---R--YDIDIYKNSIRLRG--KTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYP   97 (261)
T ss_dssp             EEEEEEEEEET-TE---E--EEEEECSSEEEEEE--SSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEE
T ss_pred             EEEcCceEEcC-CC---c--eEEEEecCcEEEeC--CcccceechhhEEEEEEccCCCcCceEEEEecCCCccCCCccCC
Confidence            47778776433 34   2  37999999999997  57789999999999999999999999999999999999999999


Q ss_pred             --eeeeeEEeeeeEEecCCCCCCCCChhHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCCCCcCCCCceEecccc
Q 003374          517 --DVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKIN-----MDFQSFVNRVNDLWGQPKFNGLDLEFDQPLR  589 (825)
Q Consensus       517 --dvQFy~E~~e~~~dl~~~r~~~~D~dEle~Eq~Er~~r~kln-----k~F~~F~~~v~~~~~~~~~~~~~~~~~iP~r  589 (825)
                        .+||-.+. ++..+++.      +++++++     +...+|.     ..+..+++.+..++        +.++..|..
T Consensus        98 ~lV~qf~~~e-~~~~~ln~------~~~~~~~-----ky~~~L~~~~~g~~~~vv~~ilk~l~--------g~kv~~P~~  157 (261)
T 2gcl_A           98 FLVLQFQKDE-ETEVQLNL------EDEDYEE-----NYKDKLKKQYDAKTHIVLSHVLKGLT--------DRRVIVPGE  157 (261)
T ss_dssp             EEEEEEETTC-EEEEECCC------CHHHHHH-----HTTTTCCSEEEEEHHHHHHHHHHHHH--------CCCEECCCS
T ss_pred             eEEEEEeCCC-ceEeeecC------CHHHHhh-----hhccccccccCCcHHHHHHHHHHHhc--------CCeeecCCc
Confidence              48998543 23444443      5666642     3333333     46777888777653        348888964


Q ss_pred             CC---CccCc-c-cc-eeEeEeeCcccceeccccCceEEecCceeEEEEEeecC---CcceeeEEEEEecCCCCeEEEec
Q 003374          590 DL---GFHGV-P-HK-ASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGL---GQKNFDMTIVFKDFKKDVLRIDS  660 (825)
Q Consensus       590 ~l---gF~Gv-p-~K-s~v~l~Pt~~cLv~l~e~P~~vitl~eIeiV~fERV~~---~~knFDmvfvfKd~~~~~~~i~~  660 (825)
                      ..   |.++| | +| ++|+|||+.+||+|+++ |+++|+++||+.|+|+||+.   +.|||||++..|+- ...+.|++
T Consensus       158 F~S~~~~~~Vkcs~ka~eG~LypL~~gflF~~K-P~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g-~~~~~Fs~  235 (261)
T 2gcl_A          158 YKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSN-RGSTTFAN  235 (261)
T ss_dssp             CCCTTSCSCEEEEETTEEEEEEECSSEEEEESS-SCEEEEGGGEEEEEEEC--------CEEEEEEEESTT-CCEEEEEE
T ss_pred             cccCCCCceEEEeccCCceEEEEecCceEEeeC-CcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCC-CccEEEcc
Confidence            33   33444 3 45 89999999999999997 99999999999999999965   67999999999972 27999999


Q ss_pred             ccCCChHhHHHHhhhcCeEEE
Q 003374          661 IPSSSLDSIKEWLDTTDIKYY  681 (825)
Q Consensus       661 Ip~~~ld~Ik~wL~s~~I~~~  681 (825)
                      |+++|+..|.+||++++|++-
T Consensus       236 IdreE~~~L~~ylk~k~l~ik  256 (261)
T 2gcl_A          236 ISKEEQQLLEQFLKSKNLRVK  256 (261)
T ss_dssp             EEGGGHHHHHHHHHHTTCCEE
T ss_pred             cCHHHHHHHHHHHHHcCCeee
Confidence            999999999999999999874
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone binding module, histone H chaperone, PITA-bread fold; 1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A Back     alignment and structure
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin, replication, AC chromosomal protein, DNA damage, DNA repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A 3bit_A* Back     alignment and structure
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A Back     alignment and structure
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation, XAA-Pro dipeptida dipeptidase, peptidase D, collagen degradation; 1.82A {Homo sapiens} PDB: 2okn_A Back     alignment and structure
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima} Back     alignment and structure
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for structural genomics O infectious diseases, aminopeptidase, viral protein; 1.97A {Bacillus anthracis} Back     alignment and structure
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A Back     alignment and structure
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken structural genomics/PR initiative, RSGI, hydrolase; 1.70A {Pyrococcus horikoshii} PDB: 1pv9_A Back     alignment and structure
>4fkc_A XAA-Pro aminopeptidase; PITA-bread structure, prolidase, hydrolase; 2.60A {Thermococcus sibiricus} Back     alignment and structure
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich; 2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 2.20A {Mycobacterium ulcerans} Back     alignment and structure
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific enzyme, aminopeptidas manganese enzyme, protease, manganese; HET: CSO; 1.56A {Escherichia coli} SCOP: c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A* 1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A* 2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A* 2bwu_A* 2bww_A* ... Back     alignment and structure
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG, protein structure initiative, midwest center for STRU genomics; HET: GOL; 2.20A {Streptococcus thermophilus} Back     alignment and structure
>4b28_A Metallopeptidase, family M24, putative; lyase, imethylsulfonioproionate, acrylate, dimethylsulfide; 2.15A {Roseobacter denitrificans och 114} Back     alignment and structure
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center for structural genomics of infectious DISE; HET: SO4; 2.89A {Bacillus anthracis} Back     alignment and structure
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.00A {Streptococcus pyogenes} Back     alignment and structure
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida} SCOP: c.55.2.1 d.127.1.1 Back     alignment and structure
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A* Back     alignment and structure
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis} Back     alignment and structure
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics, midwest center for structu genomics, hydrolase; HET: MSE; 2.15A {Corynebacterium diphtheriae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 825
d2gcla1238 b.55.1.10 (A:237-474) FACT complex subunit POB3, m 4e-41
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  148 bits (376), Expect = 4e-41
 Identities = 29/235 (12%), Positives = 77/235 (32%), Gaps = 23/235 (9%)

Query: 451 RGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMV 510
           RGR     ++ + N  R      E    +    I+     P   ++  ++   +   +  
Sbjct: 18  RGRY---DIDIYKNSIRLRGKTYEY--KLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQ 72

Query: 511 GNKK--TKDVQFYV-EVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKINMDFQSFVNR 567
           G        +QF   E  +V   L          D+++++   +     ++   +   +R
Sbjct: 73  GQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAK-THIVLSHVLKGLTDR 131

Query: 568 VNDLWGQPKFNGLDLEFDQPLRDLGFHGVPHKASAFIVPTSSCLVELIETPFLVVTLGEI 627
              + G         E+                  ++ P  +    L +     +   ++
Sbjct: 132 RVIVPG---------EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTL-YIPFSDV 181

Query: 628 EIVNLERVGLG---QKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIKEWLDTTDIK 679
            +VN+ R G      + FD+ +V +   +      +I       ++++L + +++
Sbjct: 182 SMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKNLR 235

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query825
d2gcla1238 FACT complex subunit POB3, middle domain {Baker's 100.0
d1chma1155 Creatinase {Pseudomonas putida [TaxId: 303]} 96.54
d1kp0a1156 Creatinase {Actinobacillus sp. [TaxId: 41114]} 95.74
d1pv9a1117 Aminopeptidase P {Archaeon Pyrococcus furiosus [Ta 86.09
d2v3za1176 Aminopeptidase P {Escherichia coli [TaxId: 562]} 81.9
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: SSRP1-like
domain: FACT complex subunit POB3, middle domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-44  Score=372.48  Aligned_cols=222  Identities=14%  Similarity=0.275  Sum_probs=177.7

Q ss_pred             cccceeeccCCCCCCccCCceEEEEeceeeeeeCCCCceEEeeccccceeeeccCCCccEEEEEEEccCceeeCceecc-
Q 003374          438 KLHDLWIRPVFGGRGRKIPGTLEAHLNGFRFATSRPEERVDIMFGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTK-  516 (825)
Q Consensus       438 ~L~dl~iRP~~~g~~kr~~G~lE~H~NG~Ry~s~~k~~~idIly~NIKh~FfqP~~~E~ivlihfhLk~PI~~Gkkk~~-  516 (825)
                      .+.||.+--. .|  |   -+|+||.|||||++  ++..+.|+|+||+|+|||||++++++++||||+||||+|||+|+ 
T Consensus         8 ~~~dv~~~~P-Rg--k---~~i~~~~~~lrl~g--~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~   79 (238)
T d2gcla1           8 SFQDVFFTTP-RG--R---YDIDIYKNSIRLRG--KTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPF   79 (238)
T ss_dssp             EEEEEEEEET-TE--E---EEEEECSSEEEEEE--SSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEE
T ss_pred             EEeCceEEcC-CC--c---eEEEEecCeEEEEC--CccceEEEhhheeEEEEccCCCCceEEEEEEecChhhcCCccCce
Confidence            6677765332 34  2   37999999999997  56789999999999999999999999999999999999999988 


Q ss_pred             -eeeeeE-EeeeeEEecCCCCCCCCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcCCCCcCCCCceEeccccCCCc
Q 003374          517 -DVQFYV-EVMDVVQTLGGGKRSAYDPDEIEEEQRERARKNKIN-MDFQSFVNRVNDLWGQPKFNGLDLEFDQPLRDLGF  593 (825)
Q Consensus       517 -dvQFy~-E~~e~~~dl~~~r~~~~D~dEle~Eq~Er~~r~kln-k~F~~F~~~v~~~~~~~~~~~~~~~~~iP~r~lgF  593 (825)
                       +||||+ |.+++.++  .      +++++++.. +.++++.+. +.|+.|++.+..++... . ..+..|..|++.+|+
T Consensus        80 ~v~qf~~~e~~~~~l~--~------~~e~~~~~~-~~~l~~~~~~~~~~~~~~~~k~l~~~k-v-~~p~~f~~~~~~~~v  148 (238)
T d2gcla1          80 LVLQFQKDEETEVQLN--L------EDEDYEENY-KDKLKKQYDAKTHIVLSHVLKGLTDRR-V-IVPGEYKSKYDQCAV  148 (238)
T ss_dssp             EEEEEETTCEEEEECC--C------CHHHHHHHT-TTTCCSEEEEEHHHHHHHHHHHHHCCC-E-ECCCSCCCTTSCSCE
T ss_pred             EEEEEccCCCcEEEec--C------ChHHHhhhh-cchhhhhhcchHHHHHHHHHHHHhCcE-e-cCCccccCCCCcceE
Confidence             799997 54444443  3      456665432 223444444 67788888877765111 0 113378888889999


Q ss_pred             cCcccceeEeEeeCcccceeccccCceEEecCceeEEEEEeecC---CcceeeEEEEEecCCCCeEEEecccCCChHhHH
Q 003374          594 HGVPHKASAFIVPTSSCLVELIETPFLVVTLGEIEIVNLERVGL---GQKNFDMTIVFKDFKKDVLRIDSIPSSSLDSIK  670 (825)
Q Consensus       594 ~Gvp~Ks~v~l~Pt~~cLv~l~e~P~~vitl~eIeiV~fERV~~---~~knFDmvfvfKd~~~~~~~i~~Ip~~~ld~Ik  670 (825)
                      .|++.+++|+||||.+||++|++ |+++|+|+||+.|+||||++   ++|||||+|++|| .+++++|++||+++++.|+
T Consensus       149 ~~~~~~~~G~L~pl~~~llf~~K-P~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~-~~~~~~fs~I~~~e~~~i~  226 (238)
T d2gcla1         149 SCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLE  226 (238)
T ss_dssp             EEEETTEEEEEEECSSEEEEESS-SCEEEEGGGEEEEEEEC--------CEEEEEEEEST-TCCEEEEEEEEGGGHHHHH
T ss_pred             EEeeccccEEEEEccCeEEEecC-CcEEEEehhEeEEEEEeecCCccccceeeEEEEEeC-CCccEEEeccCHHHHHHHH
Confidence            99999999999999999999997 88999999999999999976   4799999999999 5679999999999999999


Q ss_pred             HHhhhcCeEE
Q 003374          671 EWLDTTDIKY  680 (825)
Q Consensus       671 ~wL~s~~I~~  680 (825)
                      +||++++|++
T Consensus       227 ~~l~~~~iki  236 (238)
T d2gcla1         227 QFLKSKNLRV  236 (238)
T ss_dssp             HHHHHTTCCE
T ss_pred             HHHHHCCCcc
Confidence            9999999986
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]} Back     information, alignment and structure
>d1pv9a1 c.55.2.1 (A:8-124) Aminopeptidase P {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli [TaxId: 562]} Back     information, alignment and structure