Citrus Sinensis ID: 003425

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-
Protein Sequence
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHcccccccHHHHHHHcccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccEEEHHHHHHHHHHHHHHHcccEEEEEccccEEEEccHHHHHHHcccccHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHEEEccccEEEEccccccEEEEEEEcEEEEEEEccccccEEEEEEccccEEEccccccccccccEEEEcccccEEEEcHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccHHHHHHcccccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccccEEEcccccEEEEEEEEEcccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccccHHHHccccccccccccEcccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccEHHHHHHHHHHHHHEEEEEEHHEHccccEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHccccccEEEEEccccccEEEEEEcEEEEEEEEccccEEEEEEEccccEEEEEEEEcccccccEEEEEcHHHHHEccHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHccccccEEEEEccccccccccccccEEEEccccHHHHHHHHHHHcccccccEEEcccccEEcEEEEEEcccEEEEEEccc
Coil and Loop (DISEMBL)
mgdgsrrkeedsdegeyeMDDLNESLRESRESRFNLVANQVSLLrrnpnrqsvlSGFRHfsrnlvfhpdnrwyRAWTKFILIWAVYSsiftpvefgffrglsknlyvLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIdlfscmpwdliykASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLattlppeqegytwigslkmgdysyadfREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLqyessyteasvlqdipiSIRAKISqtlylpyiekvplfkgcsseFINQIVIRLHeefflpgevimekgNVVDQLYFVCLGKLeevgieengtedyvsylhpnssfgevsilcnipqpytVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNsaayhgdlyqlegliragadpnrtdydgrsplhlaaSRGYEEIMTFLIQKgvdinlkdnfgntplLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLsngidpntrdydlrtplhVAASEGLYLMAKLLVEAgasvfpkdrwgntpldegrmcgNKNLIKLLEDAkstqllefphgfqdtadkrnptrkctvfpfhpwdakesrrhgivLWIPQNIKDLIKTAAEQLdfrggdcilsseggkildvdminddQKLYLIQETH
Flexible Loop (DISEMBL)
mgdgsrrkeedsdegeyemDDLNESLRESRESRFNLVANqvsllrrnpnrqSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYinrnrlgrdirDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNgidpntrdydlrTPLHVAASEGLYLMAKLLVEAGAsvfpkdrwgntpldegrmCGNKNLIKLLEDAKSTQLLEFPHgfqdtadkrnptRKCTVFpfhpwdakesrrHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSeggkildvdmiNDDQKLYLIQETH
Low Complexity Region (SEG)
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH
Disordered region (IsUnstruct)
************************************VANQVSLL*******SVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADP**TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ********TRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLI****
Disordered Region (DISOPRED)
***********************************************************FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ*************************************************************************IMTFLIQKGV**NLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI****************************************************IPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQE**
Disordered Region (DISEMBL)
********************DLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH
Disordered Region (DISPRO)
********************************RFN**A*QVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK*******************PTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQE**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	821	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.987	0.979	0.707	0.0
Q94A76	820	Potassium channel GORK OS	no	no	0.989	0.990	0.649	0.0
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.991	0.948	0.637	0.0
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.866	0.988	0.568	0.0
Q38998	857	Potassium channel AKT1 OS	no	no	0.833	0.798	0.339	1e-112
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.799	0.701	0.343	1e-109
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.799	0.701	0.343	1e-109
Q75HP9	855	Potassium channel AKT2 OS	no	no	0.907	0.871	0.330	1e-108
Q38898	802	Potassium channel AKT2/3	no	no	0.878	0.899	0.313	1e-100
Q9SCX5	880	Probable potassium channe	no	no	0.806	0.752	0.316	1e-98

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/814 (70%), Positives = 692/814 (85%), Gaps = 3/814 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+KD  G+
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGS 615

Query: 607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           TPLLEAIK GND  A+LLVKEGA+LN+E AG+FLCT VA+GDSD LKR+LSNGIDPN++D
Sbjct: 616 TPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKD 675

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           YD RTPLHVAASEG Y++A  LVEA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK+
Sbjct: 676 YDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKN 735

Query: 727 TQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQL 786
           +Q+  FP G ++  DK    +KCTV+  HP D+KE RR GIVLW+P++I++LI+TA EQL
Sbjct: 736 SQISSFPSGSKEPKDKVY-KKKCTVYFSHPGDSKEKRRRGIVLWVPRSIEELIRTAKEQL 794

Query: 787 DFRGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
           +     C+LS +  KI+DVD+I+D QKLYL  ET
Sbjct: 795 NVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score = 1135 bits (2937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/824 (64%), Positives = 664/824 (80%), Gaps = 12/824 (1%)

Query: 1   MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHF 60
           MG   RR+E    E E   DD++     SR  + +L A     L  + +R+    G  H 
Sbjct: 1   MGRLRRRQEIIDHEEEESNDDVS-----SRRGKLSL-AETFRWLDSSEHRRIETDG--HN 52

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDI 120
               + HP NRWY+AW  FIL+WA+YSS+FTP+EFGFFRGL + L+VLDIVGQIAFL DI
Sbjct: 53  DYKYIIHPKNRWYKAWEMFILVWAIYSSLFTPMEFGFFRGLPERLFVLDIVGQIAFLVDI 112

Query: 121 VLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLW 180
           VLQF +AYRD+QTYR + K T IA RYL+S F++D   C PWDLIYKASG+ E VRYLLW
Sbjct: 113 VLQFFVAYRDTQTYRTVYKPTRIAFRYLKSHFLMDFIGCFPWDLIYKASGKHELVRYLLW 172

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           IRL+RVRKV +FF ++EKD RINY+F+RI+KL+ VE+YC+H AACIFYYLATTLPPE EG
Sbjct: 173 IRLFRVRKVVEFFQRLEKDTRINYLFTRILKLLFVEVYCTHTAACIFYYLATTLPPENEG 232

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
           YTWIGSLK+GDYSY +FREI  WK Y T++Y ++VTM TVGYGD+HAVNLREM+F+MIYV
Sbjct: 233 YTWIGSLKLGDYSYENFREIDLWKRYTTALYFAIVTMATVGYGDIHAVNLREMIFVMIYV 292

Query: 301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
           SFDM+LGAYLIGN+TALIVKGS TE+FRDKM DL+ ++NR +LGRD+R QI GH+RLQY+
Sbjct: 293 SFDMVLGAYLIGNITALIVKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYD 352

Query: 361 SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEV 420
           S YT+  +LQDIP SIRAKI+Q LYLPYI+KVPLFKGCS+EFINQIVIRLHEE+FLPGEV
Sbjct: 353 SHYTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEV 412

Query: 421 IMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480
           I E+GNVVD LYFVC G LE +  + +G+E+ V+ L P++SFG++SI+CNI QP+TV+VC
Sbjct: 413 ITEQGNVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVC 472

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELA 540
           ELC LLR+DKQSF+NI++IYF DGR +L N+++ KES+ R+K+L+SDI  HI K EAELA
Sbjct: 473 ELCHLLRLDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELA 532

Query: 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           LKVNSAA+ GD YQL+ LIR+GADPN+TDYDGRSPLHLAA RGYE+I  FLIQ+GVD+NL
Sbjct: 533 LKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNL 592

Query: 601 KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI 660
           KD FG+TPL EA+K G +G   LLVKEGAS N+E++G+FLCT VA+GDSD LKR+LS+G+
Sbjct: 593 KDKFGHTPLFEAVKAGQEGVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGM 652

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720
           +PN+ DYD RTPLHVAASEGL+LMAK+LVEAGASV  KDRWGN+PLDE R+CGNK LIKL
Sbjct: 653 NPNSEDYDHRTPLHVAASEGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKL 712

Query: 721 LEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKE--SRRHGIVLWIPQNIKDL 778
           LED K+ Q   +P   ++  ++R   RKCTVFPFHP +AKE  SR+HG+V+WIP N++ L
Sbjct: 713 LEDVKNAQSSIYPSSLRELQEERIERRKCTVFPFHPQEAKEERSRKHGVVVWIPSNLEKL 772

Query: 779 IKTAAEQLDFRGGD--CILSSEGGKILDVDMINDDQKLYLIQET 820
           I TAA++L    G    +LS + G+I D+DMI+D  KLY+I +T
Sbjct: 773 IVTAAKELGLSDGASFVLLSEDQGRITDIDMISDGHKLYMISDT 816

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/843 (63%), Positives = 663/843 (78%), Gaps = 29/843 (3%)

Query: 2   GDGSRRKEEDSDEGE----------------------YEMDDLNESLRESRESRFNLVAN 39
           G GS+R+ ED D+GE                      YE+D + + +  SR SR  L  +
Sbjct: 4   GIGSKRRVED-DDGENMPGRKKKEEEEEEEDDDGEEEYEVDVVRDRIGSSRGSRLALFGS 62

Query: 40  QVSLLRRNPNRQSV--LSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGF 97
            + L R  P R+ V  + G     ++ V  PDN+WYR WT+FIL+WAVYSS FTP+EFGF
Sbjct: 63  DLRLGRFRPRRRRVAPVDGDDGIFQDFVIDPDNKWYRLWTRFILVWAVYSSFFTPLEFGF 122

Query: 98  FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLF 157
           FRGL +NL+ LDI GQIAFL DIVL+F +AYRD  TYR++   T IALRY +SSFI DL 
Sbjct: 123 FRGLPRNLFFLDIAGQIAFLIDIVLRFFVAYRDPDTYRMVHNPTSIALRYCKSSFIFDLL 182

Query: 158 SCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVEL 217
            C PWD IYKA G KE VRYLLWIRL R  KV++FF  MEKDIRINY+F+RIVKLI VEL
Sbjct: 183 GCFPWDAIYKACGSKEEVRYLLWIRLTRAMKVTEFFRSMEKDIRINYLFTRIVKLIVVEL 242

Query: 218 YCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTM 277
           YC+H AACIFYYLATTLP   EGYTWIGSL++GDYSY+ FREI   K Y+TS+Y ++VTM
Sbjct: 243 YCTHTAACIFYYLATTLPESMEGYTWIGSLQLGDYSYSHFREIDLTKRYMTSLYFAIVTM 302

Query: 278 TTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY 337
            TVGYGD+HAVN+REM+FIMIYVSFDMILGAYLIGNMTALIVKGS+TE+FRDKM ++++Y
Sbjct: 303 ATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLIGNMTALIVKGSRTERFRDKMKEVIRY 362

Query: 338 INRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKG 397
           +NRN+LG+DIR+QI GHLRLQYESSYTEASVLQDIP+SIRAKISQTLY PYIE +PLFKG
Sbjct: 363 MNRNKLGKDIREQIKGHLRLQYESSYTEASVLQDIPVSIRAKISQTLYKPYIESIPLFKG 422

Query: 398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLH 457
           CS+EFI QIVIRL EEFFLPGEVI+E+G+ VDQLYFVC G LE VGI E+G E+ +  L 
Sbjct: 423 CSAEFIQQIVIRLQEEFFLPGEVILEQGSAVDQLYFVCHGALEGVGIGEDGQEETILMLE 482

Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKES 517
           P SSFGE+++LCNIPQP+TV+VCELCRLLR+DKQSFTNI++I+F DGR++L+NL +  E 
Sbjct: 483 PESSFGEIAVLCNIPQPFTVRVCELCRLLRLDKQSFTNILEIFFVDGRRILSNLSESSEY 542

Query: 518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLH 577
             R+KQL+SDITFHI K EAEL L+VN+AA++GD++QL+ LIRAGADP  TDYDGRSPLH
Sbjct: 543 GSRIKQLESDITFHIGKQEAELTLRVNNAAFYGDMHQLKSLIRAGADPKNTDYDGRSPLH 602

Query: 578 LAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 637
           LAA +G+E+++ FL+ +GVDI+L D FGNTPLLEA+K G+D  A+LL  +GA L++E AG
Sbjct: 603 LAACKGFEDVVQFLLHEGVDIDLSDKFGNTPLLEAVKQGHDRVATLLFSKGAKLSLENAG 662

Query: 638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697
           S LCTAVARGD+D ++R L+ G DPN RDYD R PLH+AA+EGLYLMAKLLV+AGASVF 
Sbjct: 663 SHLCTAVARGDTDFVRRALAYGGDPNARDYDHRAPLHIAAAEGLYLMAKLLVDAGASVFA 722

Query: 698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPW 757
            DRWG TPLDEGR CG++ +++LLE AKS +L  +P   ++  DK +P R+C+VFP HPW
Sbjct: 723 TDRWGTTPLDEGRRCGSRTMVQLLEAAKSGELSRYPERGEEVRDKMHP-RRCSVFPHHPW 781

Query: 758 DAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRG---GDCILSSEGGKILDVDMINDDQKL 814
           D  E RR G+V+WIP  I+ L+ +A E+L   G   G  +L  +G ++LDVDM++D QKL
Sbjct: 782 DGGERRREGVVVWIPHTIEGLVSSAQEKLGLAGSGEGLRLLGEDGARVLDVDMVHDGQKL 841

Query: 815 YLI 817
           YL+
Sbjct: 842 YLV 844

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/714 (56%), Positives = 548/714 (76%), Gaps = 3/714 (0%)

Query: 16  EYEMDDLNESLRESRESRFNLVANQVSLLRRNP-NRQSVLSGFRHFSRNLVFHPDNRWYR 74
           EYE+++++++L  S  SR +L A ++   R +  +  + L   +    +LV HP+ RWYR
Sbjct: 4   EYELNEIDDTLHGSVGSRLSLFARELKSRRSSSWHGGTALRLPKDLYESLVIHPNGRWYR 63

Query: 75  AWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTY 134
            W   + +W++YS+ FTP EF FFRGL   L  L+ V Q+ FL D+ + F LAYRD  TY
Sbjct: 64  IWANMMFLWSIYSTFFTPFEFSFFRGLPDQLLDLECV-QLVFLADVAVHFFLAYRDPHTY 122

Query: 135 RLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFH 194
           R++  +  IALRY++ SF +D+  C PWD IYK +GR EAVR+L+W+RLYR RKV  FF 
Sbjct: 123 RMVHDKRHIALRYIKGSFALDVLGCFPWDAIYKVTGRVEAVRWLVWVRLYRGRKVMAFFK 182

Query: 195 KMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSY 254
           ++EKDIR++Y+ +RIVKLI VELYC+H AAC FYYLATTLPP +EG TWIGSL +GD  Y
Sbjct: 183 RVEKDIRVSYLLTRIVKLITVELYCTHTAACGFYYLATTLPPAREGGTWIGSLSLGDARY 242

Query: 255 ADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNM 314
            +FRE+     Y+TS+Y ++VTM TVGYGD+HAVN REM F ++Y+SF ++L AYLIGNM
Sbjct: 243 INFREVDLLTRYVTSLYLAIVTMATVGYGDIHAVNTREMAFTVVYISFSIVLSAYLIGNM 302

Query: 315 TALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVL-QDIP 373
           TALIVKGS+TE+FRD+MTDL++Y+NRNRLG  IR Q+  HL LQYESSYT   V+  DIP
Sbjct: 303 TALIVKGSRTERFRDRMTDLIRYMNRNRLGSAIRSQVKDHLMLQYESSYTRDRVIVDDIP 362

Query: 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433
           +++R+K+SQTLYL  + +V LF+GCS +F++QIV++LHEEFFLPGEVI+E+G VVDQ+Y 
Sbjct: 363 VAVRSKMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLPGEVILEQGTVVDQIYI 422

Query: 434 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
           V  G LEEV   E+G+E+ +S L P    G+V+++CNIPQPYTV+VCELC LLRIDKQS 
Sbjct: 423 VAHGCLEEVANGEDGSEEIISELRPYGIVGDVAVICNIPQPYTVRVCELCSLLRIDKQSL 482

Query: 494 TNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY 553
           T+I+ IYF D  ++L+NLL+GKE++ + KQL+SDIT+ ++K E+EL L VN+AAYHGD++
Sbjct: 483 TSILQIYFKDNSQILSNLLKGKETESKRKQLESDITYLLAKQESELVLGVNNAAYHGDIF 542

Query: 554 QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
           +L+ LI AGADP+++DYDGR+ LH+AA RGYE I+ FLIQ+G ++N  D FGN+PLL+A+
Sbjct: 543 RLKSLISAGADPSKSDYDGRTALHIAALRGYENIVRFLIQRGANVNSIDRFGNSPLLQAV 602

Query: 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL 673
           K G+D   SLLV+ GA LN+E+AG +LC  V  G  DLLK++L  GI PN R+YD RTPL
Sbjct: 603 KSGHDRITSLLVEHGAILNLEDAGGYLCRVVRGGRIDLLKKLLRFGISPNCRNYDQRTPL 662

Query: 674 HVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727
           H+AA+EGL+L+A  L+E+GA +  KDRWGNTPLDEGR C +K L+++LE A++ 
Sbjct: 663 HIAAAEGLHLVASTLIESGADIQAKDRWGNTPLDEGRRCSSKPLVRILEQARTV 716

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/710 (33%), Positives = 384/710 (54%), Gaps = 26/710 (3%)

Query: 20  DDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKF 79
           D++ +  RES  S F+L    +  L    NR+  L       R  V  P +  YR W  F
Sbjct: 13  DEIEQLSRES--SHFSLSTGILPSLGARSNRRVKL-------RRFVVSPYDHKYRIWEAF 63

Query: 80  ILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICK 139
           +++  VY++  +P EFGF R     L + D +    F  DI++ F + Y D  TY ++  
Sbjct: 64  LVVLVVYTAWVSPFEFGFLRKPRPPLSITDNIVNAFFAIDIIMTFFVGYLDKSTYLIVDD 123

Query: 140 RTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199
           R  IA +YLRS F++DL S +P +   + S +   +  +L  RL+R+R+V   F ++EKD
Sbjct: 124 RKQIAFKYLRSWFLLDLVSTIPSEAAMRISSQSYGLFNML--RLWRLRRVGALFARLEKD 181

Query: 200 IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE 259
              NY + R  KL+ V L+  H AAC +Y +A          TWIG+      + A+F E
Sbjct: 182 RNFNYFWVRCAKLVCVTLFAVHCAACFYYLIAAR--NSNPAKTWIGA------NVANFLE 233

Query: 260 IGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319
              W  Y+TSMY S+ T+TTVGYGD+H VN +EM+F + Y+ F++ L AYLIGNMT L+V
Sbjct: 234 ESLWMRYVTSMYWSITTLTTVGYGDLHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVV 293

Query: 320 KG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES---SYTEASVLQDIPIS 375
            G S+T  FRD +     + +RN L   ++DQ++ HL L+Y +      +   L  +P +
Sbjct: 294 HGTSRTRNFRDTIQAASNFAHRNHLPPRLQDQMLAHLCLKYRTDSEGLQQQETLDALPKA 353

Query: 376 IRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVC 435
           IR+ IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ +       Y + 
Sbjct: 354 IRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV 413

Query: 436 LGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTN 495
            G  + V ++  GTE  V  +      GE+ +LC  PQ +TV+   LC+LLR+++ +F N
Sbjct: 414 NGTADLVDVD-TGTESIVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLN 472

Query: 496 IIDIYFCDGRKVLTNLLQ--GKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY 553
           II     DG  ++ NLLQ   + +D  +  +  +I   +++ + +L L +  AA   D  
Sbjct: 473 IIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDL 532

Query: 554 QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
            L  L++ G DPN +D +GR+PLH+AAS+G    +  L++   D N +D  G+ PL EA+
Sbjct: 533 LLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAM 592

Query: 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL 673
             G++    +L++ G++++  + G F CTA  +G+  LLK ++ +G D         + L
Sbjct: 593 VEGHEKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDVTRPRATGTSAL 652

Query: 674 HVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           H A  E    M K L+E GA V  +D  G TP D     G++++  L  +
Sbjct: 653 HTAVCEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/675 (34%), Positives = 365/675 (54%), Gaps = 19/675 (2%)

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
           R  +  P +R YR W  F+++  VYS+  +P EFGF    +  L   D V    F  DI+
Sbjct: 90  RRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDII 149

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAVRYLLW 180
           L F +AY D  +Y L      IA RY  +  ++D+ S +P +   +    K  +  +   
Sbjct: 150 LTFFVAYLDKMSYMLEDDPKKIAWRYSTTWLVLDVASTIPSEFARRILPSKLRSYGFFNM 209

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +RL+R+R+VS  F ++EKD   NY + R  KLI V L+  H AAC +Y LA   P     
Sbjct: 210 LRLWRLRRVSSLFSRLEKDRHFNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTS- 268

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
            TWIG+        ADF E   W  Y+TS+Y S+ T+TTVGYGD+HA N REM+F + Y+
Sbjct: 269 -TWIGNY------MADFHERSLWIRYVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYM 321

Query: 301 SFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQY 359
            F++ L AYLIGNMT L+V G S+T  +RD +     +  RN+L   ++DQ+I H+ L+Y
Sbjct: 322 LFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQLPPRLQDQMISHISLKY 381

Query: 360 ES---SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
            +      +  +L  +P +I++ ISQ L+   ++ V LF+G S++ I Q+V  +  E+F 
Sbjct: 382 RTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFP 441

Query: 417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
           P E ++ +       Y +  G +E V  ++NG +  +         GE+ +LC  PQ +T
Sbjct: 442 PREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFT 500

Query: 477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ----GKESDLRLKQLQSDITFHI 532
           V+   LC+LLR+++ +F +I+     DG  ++ NL+Q     KE+ + +  +  +I   +
Sbjct: 501 VRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSV-MAGVVKEIESML 559

Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           ++   +L + +  A   GD + L  L++ G DPN +D DG + LH+AAS+G E+ +  L+
Sbjct: 560 ARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLL 619

Query: 593 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL 652
           + G D N +D+ G  PL EA+   +     LLV+ GA L+  + G + C AV   D++LL
Sbjct: 620 EYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSGDTGLYACIAVEESDTELL 679

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
             ++  G D N    D  T LH A  +G   MA+LL+E GA +  +D  G TP       
Sbjct: 680 NDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGADIDKQDGNGWTPRALAEQQ 739

Query: 713 GNKNLIKLLEDAKST 727
           G+ ++  L    K+ 
Sbjct: 740 GHDDIQLLFRSRKAA 754

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/675 (34%), Positives = 365/675 (54%), Gaps = 19/675 (2%)

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
           R  +  P +R YR W  F+++  VYS+  +P EFGF    +  L   D V    F  DI+
Sbjct: 90  RRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDII 149

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAVRYLLW 180
           L F +AY D  +Y L      IA RY  +  ++D+ S +P +   +    K  +  +   
Sbjct: 150 LTFFVAYLDKMSYMLEDDPKKIAWRYSTTWLVLDVASTIPSEFARRILPSKLRSYGFFNM 209

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +RL+R+R+VS  F ++EKD   NY + R  KLI V L+  H AAC +Y LA   P     
Sbjct: 210 LRLWRLRRVSSLFSRLEKDRHFNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTS- 268

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
            TWIG+        ADF E   W  Y+TS+Y S+ T+TTVGYGD+HA N REM+F + Y+
Sbjct: 269 -TWIGNY------MADFHERSLWIRYVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYM 321

Query: 301 SFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQY 359
            F++ L AYLIGNMT L+V G S+T  +RD +     +  RN+L   ++DQ+I H+ L+Y
Sbjct: 322 LFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQLPPRLQDQMISHISLKY 381

Query: 360 ES---SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
            +      +  +L  +P +I++ ISQ L+   ++ V LF+G S++ I Q+V  +  E+F 
Sbjct: 382 RTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFP 441

Query: 417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
           P E ++ +       Y +  G +E V  ++NG +  +         GE+ +LC  PQ +T
Sbjct: 442 PREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFT 500

Query: 477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ----GKESDLRLKQLQSDITFHI 532
           V+   LC+LLR+++ +F +I+     DG  ++ NL+Q     KE+ + +  +  +I   +
Sbjct: 501 VRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSV-MAGVVKEIESML 559

Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           ++   +L + +  A   GD + L  L++ G DPN +D DG + LH+AAS+G E+ +  L+
Sbjct: 560 ARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLL 619

Query: 593 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL 652
           + G D N +D+ G  PL EA+   +     LLV+ GA L+  + G + C AV   D++LL
Sbjct: 620 EYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSGDTGLYACIAVEESDTELL 679

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
             ++  G D N    D  T LH A  +G   MA+LL+E GA +  +D  G TP       
Sbjct: 680 NDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGADIDKQDGNGWTPRALAEQQ 739

Query: 713 GNKNLIKLLEDAKST 727
           G+ ++  L    K+ 
Sbjct: 740 GHDDIQLLFRSRKAA 754

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 262/792 (33%), Positives = 418/792 (52%), Gaps = 47/792 (5%)

Query: 65  VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKN-LYVLDIVGQIAFLFDIVLQ 123
           V  P +  YR W  F+++   YS+   P E  F     K  L V DIV  + F  DIVL 
Sbjct: 63  VISPLDSRYRCWDTFMVVLVAYSAWVYPFEVAFMNASPKGGLEVADIVVDLFFAVDIVLT 122

Query: 124 FCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD-LIYKASG--RKEAVRYLLW 180
           F +AY DS+T  L+  R  IA RYL + FI+D+ S +P+  L Y  +G  R+     LL 
Sbjct: 123 FFVAYIDSRTQLLVRDRRRIATRYLSTFFIMDVASTIPFQGLAYIVTGEVRESPAFSLLG 182

Query: 181 I-RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQE 239
           I RL+R+RKV QFF ++EKDIR NY + R  +LIAV L+  H A C++Y +A   P  ++
Sbjct: 183 ILRLWRLRKVKQFFTRLEKDIRFNYFWIRCARLIAVTLFLVHCAGCLYYLIADRYPHREK 242

Query: 240 GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIY 299
             TWIG++        DF+E   W  Y +S+Y S+ TMTTVGYGD+HA N  EM+F + Y
Sbjct: 243 --TWIGAV------IPDFQEASLWIRYTSSVYWSITTMTTVGYGDMHAQNTVEMIFNIFY 294

Query: 300 VSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQ 358
           + F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++ RN L   ++ QI+ ++ L+
Sbjct: 295 MLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIRAASNFVGRNHLPPRLKQQILAYMCLK 354

Query: 359 YES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP 417
           + + S  +  ++  +P SI   I + L+LP ++ V LFKG S E +  +V ++  E+  P
Sbjct: 355 FRAESLNQQQLMDQLPKSICKGICEYLFLPVVKDVYLFKGVSREVLLLMVTKMKPEYIPP 414

Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
            E ++ +    D +Y V  G++E +  +    E  V+ L     FGEVS L + PQ +T+
Sbjct: 415 KEDVIVQNEAPDDVYIVVSGEVEVIYSDGEAEERVVATLGTRGVFGEVSALSDRPQSFTL 474

Query: 478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL--QGKESDLRLKQLQSDITFHISKH 535
           +   LC+LLR+ + +    +     D   ++ N L  Q +  D++++ L  +       H
Sbjct: 475 RTRTLCQLLRLRQAALKEAMQSKPEDSVVIIKNFLKHQIEMHDMKVEDLLGEDAAGEYDH 534

Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
              +   + + A  G+   LE L++ G DP+  D  GR+ LH+AAS+GYE+ +  L+++ 
Sbjct: 535 -GNIPCNLLTVAATGNSSFLEDLLKVGMDPDVGDSKGRTALHIAASKGYEDCVLVLLKQA 593

Query: 596 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG-ASLNVEEAGSFLCTAVARGDSDLLKR 654
            ++N+KD  GNT L  AI   +    ++L      S     AG  LC A  RGD D L+ 
Sbjct: 594 CNVNIKDAQGNTALWNAIAARHHKIFNILYHFARVSSPHHAAGDLLCLAARRGDLDTLRE 653

Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN---------TP 705
           +L +G+  ++ D D  T L VA +EG   +A+LLV  GASV   DR  +           
Sbjct: 654 LLKHGLAVDSEDRDGATALRVALAEGHADVARLLVLNGASV---DRAASHNEQQAAAAVS 710

Query: 706 LDEGR-MCGNKNL---IKLLEDAKSTQLLEFPHGFQDTADKRNPTR-----------KCT 750
           +DE R +   + L   + ++ D+ S            + D RN  R           + +
Sbjct: 711 VDELRELMKTRELAHPVTIVVDSPSPAAAAVIREVGSSGDSRNGRRQSARSDGAHWPRVS 770

Query: 751 VFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRG-GDCILSSEGGKILDVDMIN 809
           ++  HP+    S   G ++ +P  +++      E+L        I++ EG +I  +D+I 
Sbjct: 771 IYRGHPFVRNRSSEAGKLINLPGTMEEFRIIIEEKLKVDARKTLIMNDEGAEIDSIDVIR 830

Query: 810 DDQKLYLIQETH 821
           D+ KL+++ E H
Sbjct: 831 DNDKLFIVTEEH 842

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/771 (31%), Positives = 399/771 (51%), Gaps = 50/771 (6%)

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFD 119
           S   +  P +  YR W  ++++   YS+   P E  F     K NL + D +  + F  D
Sbjct: 63  SSGWIISPMDSRYRCWEFYMVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVD 122

Query: 120 IVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD----LIYKASGRKEAV 175
           IVL F +AY D +T  L+ +   IA+RYL + F++D+ S +P+D    LI   S      
Sbjct: 123 IVLTFFVAYIDERTQLLVREPKQIAVRYLSTWFLMDVASTIPFDAIGYLITGTSTLNITC 182

Query: 176 RYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
             L  +R +R+R+V   F ++EKDIR +Y + R  +L++V L+  H A C +Y +A   P
Sbjct: 183 NLLGLLRFWRLRRVKHLFTRLEKDIRYSYFWIRCFRLLSVTLFLVHCAGCSYYLIADRYP 242

Query: 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
              +G TW  ++        +F E      YI ++Y S+ TMTTVGYGD+HA N  EMVF
Sbjct: 243 --HQGKTWTDAI-------PNFTETSLSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVF 293

Query: 296 IMIYVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
           I +Y+ F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++NRNRL   ++DQI+ +
Sbjct: 294 ITVYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVNRNRLPPRLKDQILAY 353

Query: 355 LRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEE 413
           + L++++ S  +  ++  +P SI   I Q L+LP +EKV LFKG S E +  +V ++  E
Sbjct: 354 MCLRFKAESLNQQHLIDQLPKSIYKSICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAE 413

Query: 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473
           +  P E ++ +    D +Y +  G++E +   E   E  +  L     FGEV  LC  PQ
Sbjct: 414 YIPPREDVIMQNEAPDDVYIIVSGEVEIID-SEMERESVLGTLRCGDIFGEVGALCCRPQ 472

Query: 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ--GKESDLRLKQLQSDITF- 530
            YT Q   L +LLR+        + I   D   +L N LQ   K S+L +  L++     
Sbjct: 473 SYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDIGDLKAQQNGE 532

Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
           +       +A  + +    G+   L+ L++A   P+ TD  G++PLH+AASRGYE+ +  
Sbjct: 533 NTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLV 592

Query: 591 LIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD 650
           L++ G +I+++D  GN+ L EAI   +     +L    A  +   AG  LC A  + + +
Sbjct: 593 LLKHGCNIHIRDVNGNSALWEAIISKHYEIFRILYHFAAISDPHIAGDLLCEAAKQNNVE 652

Query: 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN-TPLDEG 709
           ++K +L  G++ +T D+   T L VA +E    M  LL   GA V   +     TPL++ 
Sbjct: 653 VMKALLKQGLNVDTEDHHGVTALQVAMAEDQMDMVNLLATNGADVVCVNTHNEFTPLEKL 712

Query: 710 RMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKE--SRRHGI 767
           R+                             ++     + +++  HP + +E      G 
Sbjct: 713 RVV--------------------------EEEEEEERGRVSIYRGHPLERRERSCNEAGK 746

Query: 768 VLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILD-VDMINDDQKLYLI 817
           ++ +P ++ DL K A E+  F G + ++++E G  +D +++I D+ KLY +
Sbjct: 747 LILLPPSLDDLKKIAGEKFGFDGSETMVTNEDGAEIDSIEVIRDNDKLYFV 797

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  361 bits (927), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 360/679 (53%), Gaps = 17/679 (2%)

Query: 58  RHFS-RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAF 116
           RH   R  +  P +  YRAW  F++I  +Y++  +P EFGF +     L +LD V    F
Sbjct: 62  RHIKLRCFIVSPFDPRYRAWDWFLVILVLYTAWASPFEFGFLQTPRAPLSILDNVVNGFF 121

Query: 117 LFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKA-SGRKEAV 175
             DIVL F +A+ D  TY L+     IA RY  +  I D+ S +P++L         +  
Sbjct: 122 AVDIVLTFFVAFLDKATYLLVDDPKRIAWRYTSTWLIFDVVSTVPYELFGSLLHNTIQGY 181

Query: 176 RYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
                +RL+R+ +VS+ F ++EKD + NY + R  KL+ V L+  H  AC  Y +A   P
Sbjct: 182 GIFSMLRLWRLHRVSKCFARLEKDRKYNYFWIRCTKLLLVSLFVVHCGACFCYSIAAHYP 241

Query: 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
                     S+     + A++++      Y+T+MY S+ T +T GYGD+H  N  E  F
Sbjct: 242 DP--------SMTFMALAEANWKQKSLLIRYVTAMYWSITTFSTTGYGDIHGNNAEERAF 293

Query: 296 IMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
           I+ Y+ F++ L AY+IGNMT L+V   S+T  FRD +     +  RN L   +++Q++ H
Sbjct: 294 ILFYMIFNLGLLAYIIGNMTNLVVHVTSRTRNFRDTIQAASAFAQRNNLPLGLQEQMVAH 353

Query: 355 LRLQYES---SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH 411
           L L+Y +      +  ++  +P +IR+ IS  L+   ++K  LF G S++ + Q+V  + 
Sbjct: 354 LSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISNDLLFQLVSEMK 413

Query: 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
            E+F P E ++ +       Y +  G ++ +    NG +  V        FGEV +LC  
Sbjct: 414 AEYFPPKEDVILRNEAPSDFYIMVTGAVDIIA-RVNGVDQVVGEAQTGHVFGEVGVLCYR 472

Query: 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ--GKESDLRLKQLQSDIT 529
           PQ +TV+   L +LLR+++ +F N++     DG  ++ NLLQ     +D  +K + ++  
Sbjct: 473 PQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDPVMKGILAETE 532

Query: 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
             +++ + +L L +  AA  GD   L  L++ G++PN TD +GR+ LH+AAS+G +  + 
Sbjct: 533 LMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGSQYCVV 592

Query: 590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
            L++ G D N++D+ G+ PL EAI   ++  A LL + GA+L+ +  G F C AV + + 
Sbjct: 593 LLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLAVGQNNL 652

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG 709
           + LK ++  G D +  D +  T LH A SEG   + + L+E GA +   D +G T     
Sbjct: 653 NALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGWTARALA 712

Query: 710 RMCGNKNLIKLLEDAKSTQ 728
              G++++  L  + +  +
Sbjct: 713 EHQGHEDIKALFYNQRPVE 731

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	821
356552003	850	PREDICTED: potassium channel SKOR-like [	0.980	0.947	0.774	0.0
356499077	849	PREDICTED: potassium channel SKOR-like [	0.980	0.948	0.770	0.0
224065090	841	predicted protein [Populus trichocarpa]	0.971	0.948	0.75	0.0
449479935	828	PREDICTED: potassium channel SKOR-like [	0.990	0.981	0.731	0.0
449445216	828	PREDICTED: potassium channel SKOR-like [	0.990	0.981	0.730	0.0
224079588	821	predicted protein [Populus trichocarpa]	0.982	0.982	0.736	0.0
15232991	828	Potassium channel SKOR [Arabidopsis thal	0.987	0.979	0.707	0.0
3810676	828	SKOR [Arabidopsis thaliana]	0.987	0.979	0.705	0.0
3641845	828	stelar K+ outward rectifying channel [Ar	0.985	0.977	0.705	0.0
225451365	794	PREDICTED: potassium channel SKOR [Vitis	0.942	0.974	0.734	0.0

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score = 1321 bits (3420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/811 (77%), Positives = 713/811 (87%), Gaps = 6/811 (0%)

Query: 13  DEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVFHPDN 70
           DE EYE+ DL + L+ SR SRF+L+ NQ+ L       +RQ++L G R FS + V HPDN
Sbjct: 44  DEREYEVQDLRDRLKSSRGSRFDLIENQLGLNSTWSKFSRQALLHGIRGFSVDFVIHPDN 103

Query: 71  RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRD 130
           RWYRAWTKFIL+WAVYSS FTP+EFGFFRGL +NL++LDI+GQIAFL DIVLQF +AYRD
Sbjct: 104 RWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRD 163

Query: 131 SQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVS 190
           SQTYR + KRTPIALRYL+S+FI DL  CMPWD+IYKA GRKE VRYLLWIRLYRVRKV+
Sbjct: 164 SQTYRTVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVT 223

Query: 191 QFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMG 250
            FFHK+EKDIR+NY+ +RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGSLK+G
Sbjct: 224 DFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLG 283

Query: 251 DYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310
           D+SY+ FREI  WK Y TS+Y ++VTM TVGYGD+HAVN+REMVFIM+YVSFDMILGAYL
Sbjct: 284 DFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMVFIMVYVSFDMILGAYL 343

Query: 311 IGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQ 370
           IGNMTALIVKGSKTEKFRDKMTDLMKY+NRNRLGRDIR+QI GH+RLQYESSYTEASV+Q
Sbjct: 344 IGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEASVIQ 403

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           DIPISIRAKISQTLYLPYIEKV LFKGCSSEFI QIVIRLHEEFFLPGEVIME+GNVVDQ
Sbjct: 404 DIPISIRAKISQTLYLPYIEKVSLFKGCSSEFIRQIVIRLHEEFFLPGEVIMEQGNVVDQ 463

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           LYFVC G LEEVG  E+GTE+ VS L PNSSFGE+SILCNIPQPYTV+VCEL RLLR+DK
Sbjct: 464 LYFVCHGVLEEVGTAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDK 523

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG 550
           QSFTNI+DIYF DGRKVL NLL+GKES  R KQL+SDITFHI K EAELALKVN+AA++G
Sbjct: 524 QSFTNILDIYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGKQEAELALKVNNAAFNG 582

Query: 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 610
           DLYQL+GLIRAGADPN+TDYDGRSPLHLAASRGYE+I  FLIQ+ VD+N+KDNFGNTPLL
Sbjct: 583 DLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQERVDVNIKDNFGNTPLL 642

Query: 611 EAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR 670
           EA+K G+D  ASLLV+EGAS+ +E AGSFLCTAVARGDSD LKR+LSNG+DPN +DYD R
Sbjct: 643 EAVKNGHDRVASLLVREGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYR 702

Query: 671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730
           +PLH+AA+EGLY MAKLL+E GASVF KDRWGNTPLDE RMCGNKNLIKLLEDAKS QL 
Sbjct: 703 SPLHIAAAEGLYFMAKLLLEGGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLS 762

Query: 731 EFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRG 790
           EFP   Q+  DK +P +KCTVFP+HPWD K++RRHGIVLWIP +I++LIK+AAEQ++F G
Sbjct: 763 EFPS--QEYTDKMHP-KKCTVFPYHPWDPKDNRRHGIVLWIPHSIQELIKSAAEQIEFSG 819

Query: 791 GDCILSSEGGKILDVDMINDDQKLYLIQETH 821
             CILS + GK+ DVDMI D QKLYL+ ETH
Sbjct: 820 DACILSEDAGKVTDVDMIKDGQKLYLVHETH 850

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score = 1316 bits (3405), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/815 (77%), Positives = 714/815 (87%), Gaps = 10/815 (1%)

Query: 13  DEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS----RNLVF 66
           DE EYE+ DL + L+ S+ S FNL+ NQ+ L       +RQ++L G R FS    ++ V 
Sbjct: 39  DEREYEVQDLRDRLKSSQGSMFNLIENQLGLNSTWSKFSRQALLHGIRGFSMDLVKDFVI 98

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWYRAWT FIL+WAVYSS FTP+EFGFFRGL +NL++LDI+GQIAFL DIVLQF +
Sbjct: 99  HPDNRWYRAWTNFILVWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFV 158

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDSQTYR++ KRTPIALRYL+S+FI DL  CMPWD+IYKA GRKE VRYLLWIRLYRV
Sbjct: 159 AYRDSQTYRMVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRV 218

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
           RKV  FFHK+EKDIR+NY+ +RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 219 RKVEDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGS 278

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GD+SY+ FREI  WK Y TS+Y ++VTM TVGYGD+HAVN+REM+FIM+YVSFDMIL
Sbjct: 279 LKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDMHAVNMREMIFIMVYVSFDMIL 338

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTEKFRDKMTDLMKY+NRNRLGRDIR+QI GH+RLQYESSYTEA
Sbjct: 339 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEA 398

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           SV+QDIPISIRAKISQTLYLPYIEKV LFKGCSSEFINQIVIRLHEEFFLPGEVIME+GN
Sbjct: 399 SVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGN 458

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEEVGI E+GTE+ VS L PNSSFGE+SILCNIPQPYTV+VCEL RLL
Sbjct: 459 VVDQLYFVCHGVLEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELGRLL 518

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSFTNI+DIYF DGRKVL NLL+GKES  R KQL+SDITFH+ K EAELALKVNSA
Sbjct: 519 RLDKQSFTNILDIYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGKQEAELALKVNSA 577

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606
           A++GD+YQL+GLIRAGADPN+ DYDGRSPLHLAASRGYE+I  FLIQ+ VD+N+ DNFGN
Sbjct: 578 AFNGDMYQLKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGN 637

Query: 607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           TPLLEA+K G+D  ASLLVKEGAS+ +E AGSFLCTAVARGDSD LKR+LSNG+DPN +D
Sbjct: 638 TPLLEAVKNGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKD 697

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           YD R+PLHVAA+EGLY MAKLL+EAGASVF +DRWGNTPLDE RMCGNKNLIKLLEDAKS
Sbjct: 698 YDYRSPLHVAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKS 757

Query: 727 TQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQL 786
           +QL EFP   Q+  DK +P +KCTVFPFHPWD K++RRHGIVLWIP +I++LIK+AAEQ+
Sbjct: 758 SQLSEFPS--QEFTDKMHP-KKCTVFPFHPWDPKDNRRHGIVLWIPHSIEELIKSAAEQI 814

Query: 787 DFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH 821
           +  GG CILS + GKI DVDMI D QKLYL+ ETH
Sbjct: 815 EISGGSCILSEDAGKITDVDMIKDGQKLYLVHETH 849

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score = 1280 bits (3313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/812 (75%), Positives = 700/812 (86%), Gaps = 14/812 (1%)

Query: 22  LNESLRESRESRFNLVANQVSLL-----------RRNPNRQSVLSGFRHFSRNLVFHPDN 70
           L + ++ SR SRFNL+  +  L+           RR  +R+SV++G R+ S   V HPDN
Sbjct: 29  LKDRIKSSRGSRFNLIEKEFGLVNNNGSSSMTSWRRKLSRESVINGIRYVSSGFVIHPDN 88

Query: 71  RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRD 130
           RWYRAWTKFIL+WAVYSS FTP+EFGFFRGL +NL++LDIVGQ+AFL DI+LQF +AYRD
Sbjct: 89  RWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQVAFLLDIILQFFIAYRD 148

Query: 131 SQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVS 190
           SQTYR + KRTPIALRYL+S FIIDL +C+PWD+IYKA G +E VRYLLWIRL RVRKV+
Sbjct: 149 SQTYRTVYKRTPIALRYLKSHFIIDLLACLPWDIIYKACGHREEVRYLLWIRLSRVRKVT 208

Query: 191 QFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMG 250
            FF KMEKDIRINY+F+RIVKLI VELYC+H AACIFY+LATTLP  QEGYTWIGSLKMG
Sbjct: 209 DFFQKMEKDIRINYLFTRIVKLIVVELYCTHTAACIFYHLATTLPSSQEGYTWIGSLKMG 268

Query: 251 DYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310
           DYSY  FREI  WK Y TS+Y +V+TM TVGYGD+HAVNLREM+F+MIYVSFDMILGAYL
Sbjct: 269 DYSYTSFREIDIWKRYTTSLYFAVITMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYL 328

Query: 311 IGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQ 370
           IGNMTALIVKGSKTEKFRDKMTDL+KY+NRNRLG+DIR+QI GH+RLQYESSYTEAS LQ
Sbjct: 329 IGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHVRLQYESSYTEASALQ 388

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           D+PISIRAK+SQTLY  YIEKVPL KGCS+EFINQIVIRLHEEFFLPGEVIME+GNVVDQ
Sbjct: 389 DLPISIRAKVSQTLYTEYIEKVPLLKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQ 448

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           LYFVC G LEEVGI ++G+E+ V  L PNSSFGE+SILCNIPQPYTV+VCELCRLLRIDK
Sbjct: 449 LYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCELCRLLRIDK 508

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG 550
           QSF+NI++IYF DGRK+L NLL+GKES+LR KQL+SDITFHI K EAELAL+VNSAAYHG
Sbjct: 509 QSFSNILEIYFYDGRKILDNLLEGKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHG 568

Query: 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL 610
           DLYQL+G IRAGADPNRTDYDGRSPLHLAASRGYE+I  FLIQ+GVDIN+KD FGNTPLL
Sbjct: 569 DLYQLKGFIRAGADPNRTDYDGRSPLHLAASRGYEDITLFLIQEGVDINIKDKFGNTPLL 628

Query: 611 EAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR 670
           EAIK G+D   SLL K+GA LN+++AGS LC AVARGDSD LKR+LSNGIDPN++DYD R
Sbjct: 629 EAIKNGHDRVESLLFKQGAILNIDDAGSVLCRAVARGDSDFLKRILSNGIDPNSKDYDHR 688

Query: 671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730
           TPLHVAASEGLYLMAKLL+EAGASVF KDRWGNTPLDEGRMCGNK LIKLLE+AKS+Q L
Sbjct: 689 TPLHVAASEGLYLMAKLLIEAGASVFSKDRWGNTPLDEGRMCGNKKLIKLLEEAKSSQKL 748

Query: 731 EFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRG 790
           EF +   +T +K  P +KCT+FPFHPW A+E RR G+VLW+P  +++L+K A+EQL F  
Sbjct: 749 EFHYSTHETTEKVLP-KKCTIFPFHPW-AEEQRRPGVVLWVPNTMEELVKAASEQLQFPD 806

Query: 791 GDCILSSEGGKILDVDMINDDQKLYLIQ-ETH 821
           G CILS + GKILDV+MI+  QKLYL   +TH
Sbjct: 807 GSCILSEDAGKILDVNMIDGGQKLYLTSDQTH 838

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score = 1278 bits (3306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/820 (73%), Positives = 711/820 (86%), Gaps = 7/820 (0%)

Query: 4   GSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS 61
           G+ R+ +   E EY ++ + E +  SR SRFNL+  Q+ +   RR  +R+++++G +   
Sbjct: 14  GTHRRSDSDGEVEYRVESVRERISSSRGSRFNLIQRQLRIDQSRRRFSRENLINGIK--- 70

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             LV  PD+RWYRAWTKFILIWAVYSS FTP+EFGFFRGL +NL++LDIVGQIAFLFDIV
Sbjct: 71  -CLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIV 129

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWI 181
            QF LAYRD QTYR++ KR+PIAL+YL+S+F+ DL SCMPWD++YKA GR+E VRYLLWI
Sbjct: 130 FQFFLAYRDKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDILYKACGRREEVRYLLWI 189

Query: 182 RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY 241
           RL+RVRKV  FF  MEKDIRINYMF+RIVKL+ VELYC+H AACIFYYLATTLP  +EGY
Sbjct: 190 RLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGY 249

Query: 242 TWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVS 301
           TWIGSLK+GDYSY+ FREI  WK Y TS+Y ++VTM TVGYGDVHAVNLREM+FIMIYVS
Sbjct: 250 TWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDVHAVNLREMIFIMIYVS 309

Query: 302 FDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES 361
           FDM+LGAYLIGNMTALIVKGSKT KFRDKM D+MKY+NRNRL R+IRDQI GHLRLQYES
Sbjct: 310 FDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYES 369

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           SYTEA+VLQDIPISIRAKISQTLYLPY++ V LF+GCS EFINQIVIRLHEEFFLPGEVI
Sbjct: 370 SYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVI 429

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE 481
           ME+GNVVDQLYFVC G LEE+GI ++ +E+ +  L PNSSFGE+SILCNIPQPYTV+VCE
Sbjct: 430 MEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCE 489

Query: 482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELAL 541
           LCRLLRIDKQSFTNI+DIYF DGRK+L NLL+GKE++LR+KQL+SDITFHI K EAELAL
Sbjct: 490 LCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELAL 549

Query: 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           KVNSAAYHGDLYQL+GL+RAGADPN+TDYDGRSPLHLAASRG+E+I+ FLIQ+GV+I+LK
Sbjct: 550 KVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLK 609

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGID 661
           DNFGNTPL+EAIK GND  A LL KEGASL V+  GSFLCTAV+RGDSDL+KR+L  GID
Sbjct: 610 DNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGID 669

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           PN++DYD RTPLH+A SEGL LMAKLL+E+GASVF KDRWGNTPLDEGR+CGNKN++KLL
Sbjct: 670 PNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLL 729

Query: 722 EDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKT 781
           E+AK++QL E P+  ++  DK+ PT+KCTVFPFHPWD +E++R GI+LW+P  I++LIK 
Sbjct: 730 EEAKASQLSESPYSSREFTDKK-PTKKCTVFPFHPWDPEENKRPGIMLWVPLTIEELIKE 788

Query: 782 AAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH 821
           ++EQL   G  CILS +GGKILDV MI++ QKLYL+ +TH
Sbjct: 789 SSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPDTH 828

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score = 1276 bits (3303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 599/820 (73%), Positives = 711/820 (86%), Gaps = 7/820 (0%)

Query: 4   GSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS 61
           G+ R+ +   E EY ++ + E +  SR SRFNL+  Q+ +   RR  +R+++++G +   
Sbjct: 14  GTHRRSDSDGEVEYRVESVRERISSSRGSRFNLIQRQLRIDQSRRRFSRENLINGIK--- 70

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             LV  PD+RWYRAWTKFILIWAVYSS FTP+EFGFFRGL +NL++LDIVGQIAFLFDIV
Sbjct: 71  -CLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIV 129

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWI 181
            QF LAYR+ QTYR++ KR+PIAL+YL+S+F+ DL SCMPWD++YKA GR+E VRYLLWI
Sbjct: 130 FQFFLAYREKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDILYKACGRREEVRYLLWI 189

Query: 182 RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY 241
           RL+RVRKV  FF  MEKDIRINYMF+RIVKL+ VELYC+H AACIFYYLATTLP  +EGY
Sbjct: 190 RLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGY 249

Query: 242 TWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVS 301
           TWIGSLK+GDYSY+ FREI  WK Y TS+Y ++VTM TVGYGDVHAVNLREM+FIMIYVS
Sbjct: 250 TWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDVHAVNLREMIFIMIYVS 309

Query: 302 FDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES 361
           FDM+LGAYLIGNMTALIVKGSKT KFRDKM D+MKY+NRNRL R+IRDQI GHLRLQYES
Sbjct: 310 FDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYES 369

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           SYTEA+VLQDIPISIRAKISQTLYLPY++ V LF+GCS EFINQIVIRLHEEFFLPGEVI
Sbjct: 370 SYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVI 429

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE 481
           ME+GNVVDQLYFVC G LEE+GI ++ +E+ +  L PNSSFGE+SILCNIPQPYTV+VCE
Sbjct: 430 MEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCE 489

Query: 482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELAL 541
           LCRLLRIDKQSFTNI+DIYF DGRK+L NLL+GKE++LR+KQL+SDITFHI K EAELAL
Sbjct: 490 LCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELAL 549

Query: 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           KVNSAAYHGDLYQL+GL+RAGADPN+TDYDGRSPLHLAASRG+E+I+ FLIQ+GV+I+LK
Sbjct: 550 KVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLK 609

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGID 661
           DNFGNTPL+EAIK GND  A LL KEGASL V+  GSFLCTAV+RGDSDL+KR+L  GID
Sbjct: 610 DNFGNTPLMEAIKNGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGID 669

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           PN++DYD RTPLH+A SEGL LMAKLL+E+GASVF KDRWGNTPLDEGR+CGNKN++KLL
Sbjct: 670 PNSKDYDSRTPLHIAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLL 729

Query: 722 EDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKT 781
           E+AK++QL E P+  ++  DK+ PT+KCTVFPFHPWD +E++R GI+LW+P  I++LIK 
Sbjct: 730 EEAKASQLSESPYSSREFTDKK-PTKKCTVFPFHPWDPEENKRPGIMLWVPLTIEELIKE 788

Query: 782 AAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQETH 821
           ++EQL   G  CILS +GGKILDV MI++ QKLYL+ +TH
Sbjct: 789 SSEQLQVSGECCILSEDGGKILDVHMIDESQKLYLVPDTH 828

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score = 1272 bits (3291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/819 (73%), Positives = 700/819 (85%), Gaps = 12/819 (1%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL-----------LRRNPNRQSVLSGF 57
           ++D D  EYE+ DL + ++ SR SRFNL+ N+  L           LRR  +R+SV++G 
Sbjct: 4   DDDEDGTEYEVQDLRDRIKSSRGSRFNLLENEFGLVNNTESSLITNLRRKLSRESVINGI 63

Query: 58  RHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFL 117
           R+ S     HPDNRWYRAWT FIL+WAVYSS FTP+EFGFFRGL +NL+++DIVGQ+AFL
Sbjct: 64  RYVSTGPAIHPDNRWYRAWTIFILLWAVYSSFFTPMEFGFFRGLPENLFIMDIVGQVAFL 123

Query: 118 FDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRY 177
            DIVLQF +AYRDSQTYR+I KR+PIALRYL+S FIIDL  C+PWD+I+K  GR+E VRY
Sbjct: 124 LDIVLQFFVAYRDSQTYRMIYKRSPIALRYLKSHFIIDLLGCLPWDIIFKVCGRREEVRY 183

Query: 178 LLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPE 237
           LLWIRL RVRKV+ FF K+EKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  
Sbjct: 184 LLWIRLSRVRKVTSFFQKLEKDIRINYLFTRIVKLIVVELYCTHTAACIFYYLATTLPAS 243

Query: 238 QEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIM 297
            EGYTWIGSLKMG Y+Y +FREI  W  Y TS+Y +VVTM TVGYGD+HAVNLREM+F+M
Sbjct: 244 HEGYTWIGSLKMGGYNYTNFREIDIWMRYTTSLYFAVVTMATVGYGDIHAVNLREMIFVM 303

Query: 298 IYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
           I+VSFDMILGAYLIGNMTA+ VKGSKTEKFRDKMTDL+KY+NRNRLG+DIR+QI GHLRL
Sbjct: 304 IFVSFDMILGAYLIGNMTAITVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHLRL 363

Query: 358 QYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP 417
           Q+ESSYTEAS LQD+PISIRAKISQTLY  YIEKVPL K CS+EFINQIVIRLHEEFFLP
Sbjct: 364 QHESSYTEASALQDLPISIRAKISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLP 423

Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
           GEVIME+GNVVDQLYFVC G LEEVGI ++G+E+ V  L PNSSFGE+SILCNIPQPYTV
Sbjct: 424 GEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTV 483

Query: 478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEA 537
           +VCELCRLLRIDKQS +NI++IYF DGR++L NLL+GKES+L+ KQL+SDITFHI K EA
Sbjct: 484 RVCELCRLLRIDKQSLSNILEIYFYDGRRILDNLLEGKESNLQYKQLESDITFHIGKQEA 543

Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           ELAL+VNS AYHGDLYQL+GLIRAGADPNRTDYDGRSPLHLAASRGYE+   FLIQ+GVD
Sbjct: 544 ELALRVNSTAYHGDLYQLKGLIRAGADPNRTDYDGRSPLHLAASRGYEDTTLFLIQEGVD 603

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
           IN+KD FGNTPLLEAIK G+D  ASLL ++GA LN+++AGS LC AVARGDSD LKRVLS
Sbjct: 604 INIKDKFGNTPLLEAIKNGHDRVASLLSEQGAILNIDDAGSVLCRAVARGDSDFLKRVLS 663

Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
           NGIDPN++DYD RTPLHVAASEGLYLMAKLL+EAGASVF KDRWGNTPL EGR+CGNKNL
Sbjct: 664 NGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGASVFSKDRWGNTPLVEGRICGNKNL 723

Query: 718 IKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKD 777
           IKLLE+AKS+Q LEF +   +T +K  P +KCT+FPFHPW AKE RR G+VLWIP  +++
Sbjct: 724 IKLLEEAKSSQKLEFHYASHETTEKMLP-KKCTIFPFHPWGAKEQRRPGVVLWIPHTMEE 782

Query: 778 LIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYL 816
           L+K A+E+L    G CILS + GKIL+VDMI+D QKLYL
Sbjct: 783 LVKAASEKLQLPDGSCILSEDAGKILEVDMIDDGQKLYL 821

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232991|ref|NP_186934.1| Potassium channel SKOR [Arabidopsis thaliana] gi|44888539|sp|Q9M8S6.1|SKOR_ARATH RecName: Full=Potassium channel SKOR; AltName: Full=Stelar K(+) outward rectifying channel gi|6728977|gb|AAF26975.1|AC018363_20 stelar K+ outward rectifying channel (SKOR) [Arabidopsis thaliana] gi|332640345|gb|AEE73866.1| Potassium channel SKOR [Arabidopsis thaliana]

 Score = 1222 bits (3163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/814 (70%), Positives = 692/814 (85%), Gaps = 3/814 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+KD  G+
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGS 615

Query: 607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           TPLLEAIK GND  A+LLVKEGA+LN+E AG+FLCT VA+GDSD LKR+LSNGIDPN++D
Sbjct: 616 TPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKD 675

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           YD RTPLHVAASEG Y++A  LVEA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK+
Sbjct: 676 YDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKN 735

Query: 727 TQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQL 786
           +Q+  FP G ++  DK    +KCTV+  HP D+KE RR GIVLW+P++I++LI+TA EQL
Sbjct: 736 SQISSFPSGSKEPKDKVY-KKKCTVYFSHPGDSKEKRRRGIVLWVPRSIEELIRTAKEQL 794

Query: 787 DFRGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
           +     C+LS +  KI+DVD+I+D QKLYL  ET
Sbjct: 795 NVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3810676|emb|CAA11280.1| SKOR [Arabidopsis thaliana]

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/814 (70%), Positives = 692/814 (85%), Gaps = 3/814 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EA++ALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEADVALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+KD  G+
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGS 615

Query: 607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           TPLLEAIK GND  A+LLVKEGA+LN+E AG+FLCT VA+GDSD LKR+LSNGIDPN++D
Sbjct: 616 TPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKD 675

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           YD RTPLHVAASEG Y++A  LVEA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK+
Sbjct: 676 YDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKN 735

Query: 727 TQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQL 786
           +Q+  FP G ++  DK    +KCTV+  HP D+KE RR GIVLW+P++I++LI+TA EQL
Sbjct: 736 SQISSFPSGSKEPKDKVY-KKKCTVYFSHPGDSKEKRRRGIVLWVPRSIEELIRTAKEQL 794

Query: 787 DFRGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
           +     C+LS +  KI+DVD+I+D QKLYL  ET
Sbjct: 795 NVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3641845|emb|CAA11281.1| stelar K+ outward rectifying channel [Arabidopsis thaliana]

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/812 (70%), Positives = 691/812 (85%), Gaps = 3/812 (0%)

Query: 11  DSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVFHP 68
           D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + HP
Sbjct: 18  DVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIVHP 77

Query: 69  DNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAY 128
           DNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +AY
Sbjct: 78  DNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFVAY 137

Query: 129 RDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRK 188
           RDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV +
Sbjct: 138 RDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRVHR 197

Query: 189 VSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLK 248
           V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGSLK
Sbjct: 198 VILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGSLK 257

Query: 249 MGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGA 308
           +GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMILGA
Sbjct: 258 LGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMILGA 317

Query: 309 YLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASV 368
           YLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA+V
Sbjct: 318 YLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEAAV 377

Query: 369 LQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVV 428
           LQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+VV
Sbjct: 378 LQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVV 437

Query: 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488
           DQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+LR+
Sbjct: 438 DQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRL 497

Query: 489 DKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAY 548
           DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EA++ALK+NSAA+
Sbjct: 498 DKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEADVALKLNSAAF 557

Query: 549 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 608
           +GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+KD  G+TP
Sbjct: 558 YGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTP 617

Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD 668
           LLEAIK GND  A+LLVKEGA+LN+E AG+FLCT VA+GDSD LKR+LSNGIDPN++DYD
Sbjct: 618 LLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYD 677

Query: 669 LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728
            RTPLHVAASEG Y++A  LVEA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK++Q
Sbjct: 678 HRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQ 737

Query: 729 LLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDF 788
           +  FP G ++  DK    +KCTV+  HP D+KE RR GIVLW+P++I++LI+TA EQL+ 
Sbjct: 738 ISSFPSGSKEPKDKVY-KKKCTVYFSHPGDSKEKRRRGIVLWVPRSIEELIRTAKEQLNV 796

Query: 789 RGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
               C+LS +  KI+DVD+I+D QKLYL  ET
Sbjct: 797 PEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451365|ref|XP_002262949.1| PREDICTED: potassium channel SKOR [Vitis vinifera] gi|296087079|emb|CBI33453.3| unnamed protein product [Vitis vinifera]

 Score = 1211 bits (3133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/775 (73%), Positives = 665/775 (85%), Gaps = 1/775 (0%)

Query: 46  RNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNL 105
           RN +   +  G RH  +     PD RWYR WTKFIL+WAVYSS FTP+EFGFFRGL ++L
Sbjct: 18  RNASTNEIFLGTRHERQKGRIEPDGRWYRTWTKFILLWAVYSSFFTPMEFGFFRGLPEDL 77

Query: 106 YVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLI 165
             LDI GQIAFL DIVL+F LAYRD+ TYR++ KRT IALRY++SSF+IDL  C+PWD+I
Sbjct: 78  VFLDIAGQIAFLIDIVLRFFLAYRDAHTYRMVYKRTSIALRYMKSSFVIDLICCLPWDII 137

Query: 166 YKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAAC 225
           YKA GRKE VRYLLWIRL RV KV+ FF  +EKD RINYMF+RI+KLIAVELYC+H AAC
Sbjct: 138 YKACGRKEEVRYLLWIRLIRVCKVTDFFQNLEKDTRINYMFTRILKLIAVELYCTHTAAC 197

Query: 226 IFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285
           +FYYLATTLP  +EGYTWIGSLK+GDYSY+ FREI  WK Y TS+Y +++TM TVGYGD+
Sbjct: 198 VFYYLATTLPQSEEGYTWIGSLKLGDYSYSHFREIDIWKRYTTSLYFAIITMATVGYGDI 257

Query: 286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGR 345
           HAVNLREM+F+MIYVSFDMILGAYLIGNMTALIVKGSKTE+FRDKMTD++KY+NRNRL R
Sbjct: 258 HAVNLREMIFVMIYVSFDMILGAYLIGNMTALIVKGSKTERFRDKMTDVIKYMNRNRLDR 317

Query: 346 DIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQ 405
           D+R+QI GHLRLQYES YTEASV+QD+PISIRAKI+QTLY P +EKV LF+GCS E INQ
Sbjct: 318 DVRNQIKGHLRLQYESGYTEASVIQDLPISIRAKIAQTLYKPLVEKVSLFRGCSLELINQ 377

Query: 406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV 465
           IVIR+HEEFFLPGEVIME+GNVVDQLYFVC G LEE+GI  +G+E+ V  L PNSSFGE+
Sbjct: 378 IVIRVHEEFFLPGEVIMEQGNVVDQLYFVCHGMLEEIGIGADGSEETVLPLQPNSSFGEI 437

Query: 466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQ 525
           SILCNIPQPYTV+V ELCRLLR+DKQSFT+I++IYF DGR++L NLL+GKES+LR+KQL+
Sbjct: 438 SILCNIPQPYTVRVLELCRLLRLDKQSFTDILEIYFYDGRRILNNLLEGKESNLRVKQLE 497

Query: 526 SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE 585
           SDITFHI + EAELAL+VNSA+YHGDLYQL+ LIRAGADPN+TDYDGRSPLHLA++RG+E
Sbjct: 498 SDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGRSPLHLASARGFE 557

Query: 586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVA 645
           +I+TFLIQ+GVD+N+ DNFGNTPLLEAIK  +D  ASLLV +GA L +++AG FLC  +A
Sbjct: 558 DIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKIDDAGGFLCATIA 617

Query: 646 RGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 705
           RGDSD LKR+LSNGIDPN++DYD RTPLHVAASEGLY MAKLL+EA ASVF KDRWGNTP
Sbjct: 618 RGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARASVFSKDRWGNTP 677

Query: 706 LDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRH 765
           LDEG  CGNKNL+KLLEDAK  QL EFP   ++  DK +P RKCTVFPFHPWD KE +R 
Sbjct: 678 LDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSREITDKMHP-RKCTVFPFHPWDPKEHKRP 736

Query: 766 GIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
           GI+LW+PQ I++LIKTA E L F    CILS +GGKILDVDMI+D QKLYL+ ET
Sbjct: 737 GIMLWVPQTIEELIKTATEGLQFSSESCILSEDGGKILDVDMISDGQKLYLLCET 791

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	821
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.987	0.979	0.707	0.0
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.984	0.985	0.649	6.3e-298
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.831	0.796	0.345	1e-107
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.777	0.725	0.328	1.8e-97
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.822	0.841	0.329	9.6e-89
TAIR|locus:2170468	677	KAT1 "potassium channel in Ara	0.544	0.660	0.349	7.4e-80
TAIR|locus:2005531	697	KAT2 "potassium channel in Ara	0.542	0.638	0.354	2e-79
TAIR|locus:2005524	662	KAT3 "AT4G32650" [Arabidopsis	0.544	0.675	0.348	8.5e-77
UNIPROTKB|F1MBN0	663	CNGA2 "Cyclic nucleotide-gated	0.467	0.579	0.274	1.2e-28
UNIPROTKB|Q03041	663	CNGA2 "Cyclic nucleotide-gated	0.467	0.579	0.274	1.2e-28

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 3076 (1087.9 bits), Expect = 0., P = 0.
 Identities = 576/814 (70%), Positives = 692/814 (85%)

Query:     9 EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
             E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct:    16 ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query:    67 HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
             HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct:    76 HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query:   127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
             AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct:   136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query:   187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
              +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct:   196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query:   247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
             LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct:   256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query:   307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
             GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct:   316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query:   367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
             +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct:   376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query:   427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
             VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct:   436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query:   487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
             R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct:   496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query:   547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN 606
             A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+KD  G+
Sbjct:   556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKLGS 615

Query:   607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
             TPLLEAIK GND  A+LLVKEGA+LN+E AG+FLCT VA+GDSD LKR+LSNGIDPN++D
Sbjct:   616 TPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKD 675

Query:   667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
             YD RTPLHVAASEG Y++A  LVEA A+V  KDRWGNTPLDE   CGNK LIKLLEDAK+
Sbjct:   676 YDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKN 735

Query:   727 TQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQL 786
             +Q+  FP G ++  DK    +KCTV+  HP D+KE RR GIVLW+P++I++LI+TA EQL
Sbjct:   736 SQISSFPSGSKEPKDKVYK-KKCTVYFSHPGDSKEKRRRGIVLWVPRSIEELIRTAKEQL 794

Query:   787 DFRGGDCILSSEGGKILDVDMINDDQKLYLIQET 820
             +     C+LS +  KI+DVD+I+D QKLYL  ET
Sbjct:   795 NVPEASCVLSEDEAKIIDVDLISDGQKLYLAVET 828

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 2860 (1011.8 bits), Expect = 6.3e-298, P = 6.3e-298
 Identities = 532/819 (64%), Positives = 665/819 (81%)

Query:     6 RRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLV 65
             RR++E  D   +E ++ N+ +  SR  + +L A     L  + +R+    G  H     +
Sbjct:     5 RRRQEIID---HEEEESNDDV-SSRRGKLSL-AETFRWLDSSEHRRIETDG--HNDYKYI 57

Query:    66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFC 125
              HP NRWY+AW  FIL+WA+YSS+FTP+EFGFFRGL + L+VLDIVGQIAFL DIVLQF 
Sbjct:    58 IHPKNRWYKAWEMFILVWAIYSSLFTPMEFGFFRGLPERLFVLDIVGQIAFLVDIVLQFF 117

Query:   126 LAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYR 185
             +AYRD+QTYR + K T IA RYL+S F++D   C PWDLIYKASG+ E VRYLLWIRL+R
Sbjct:   118 VAYRDTQTYRTVYKPTRIAFRYLKSHFLMDFIGCFPWDLIYKASGKHELVRYLLWIRLFR 177

Query:   186 VRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIG 245
             VRKV +FF ++EKD RINY+F+RI+KL+ VE+YC+H AACIFYYLATTLPPE EGYTWIG
Sbjct:   178 VRKVVEFFQRLEKDTRINYLFTRILKLLFVEVYCTHTAACIFYYLATTLPPENEGYTWIG 237

Query:   246 SLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMI 305
             SLK+GDYSY +FREI  WK Y T++Y ++VTM TVGYGD+HAVNLREM+F+MIYVSFDM+
Sbjct:   238 SLKLGDYSYENFREIDLWKRYTTALYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMV 297

Query:   306 LGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTE 365
             LGAYLIGN+TALIVKGS TE+FRDKM DL+ ++NR +LGRD+R QI GH+RLQY+S YT+
Sbjct:   298 LGAYLIGNITALIVKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYDSHYTD 357

Query:   366 ASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKG 425
               +LQDIP SIRAKI+Q LYLPYI+KVPLFKGCS+EFINQIVIRLHEE+FLPGEVI E+G
Sbjct:   358 TVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQG 417

Query:   426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL 485
             NVVD LYFVC G LE +  + +G+E+ V+ L P++SFG++SI+CNI QP+TV+VCELC L
Sbjct:   418 NVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHL 477

Query:   486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS 545
             LR+DKQSF+NI++IYF DGR +L N+++ KES+ R+K+L+SDI  HI K EAELALKVNS
Sbjct:   478 LRLDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNS 537

Query:   546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
             AA+ GD YQL+ LIR+GADPN+TDYDGRSPLHLAA RGYE+I  FLIQ+GVD+NLKD FG
Sbjct:   538 AAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLKDKFG 597

Query:   606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
             +TPL EA+K G +G   LLVKEGAS N+E++G+FLCT VA+GDSD LKR+LS+G++PN+ 
Sbjct:   598 HTPLFEAVKAGQEGVIGLLVKEGASFNLEDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSE 657

Query:   666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725
             DYD RTPLHVAASEGL+LMAK+LVEAGASV  KDRWGN+PLDE R+CGNK LIKLLED K
Sbjct:   658 DYDHRTPLHVAASEGLFLMAKMLVEAGASVISKDRWGNSPLDEARLCGNKKLIKLLEDVK 717

Query:   726 STQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKE--SRRHGIVLWIPQNIKDLIKTAA 783
             + Q   +P   ++  ++R   RKCTVFPFHP +AKE  SR+HG+V+WIP N++ LI TAA
Sbjct:   718 NAQSSIYPSSLRELQEERIERRKCTVFPFHPQEAKEERSRKHGVVVWIPSNLEKLIVTAA 777

Query:   784 EQLDFRGGDC--ILSSEGGKILDVDMINDDQKLYLIQET 820
             ++L    G    +LS + G+I D+DMI+D  KLY+I +T
Sbjct:   778 KELGLSDGASFVLLSEDQGRITDIDMISDGHKLYMISDT 816

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
 Identities = 246/711 (34%), Positives = 387/711 (54%)

Query:    20 DDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKF 79
             D++ +  RES  S F+L    +  L    NR+  L       R  V  P +  YR W  F
Sbjct:    13 DEIEQLSRES--SHFSLSTGILPSLGARSNRRVKL-------RRFVVSPYDHKYRIWEAF 63

Query:    80 ILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICK 139
             +++  VY++  +P EFGF R     L + D +    F  DI++ F + Y D  TY ++  
Sbjct:    64 LVVLVVYTAWVSPFEFGFLRKPRPPLSITDNIVNAFFAIDIIMTFFVGYLDKSTYLIVDD 123

Query:   140 RTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199
             R  IA +YLRS F++DL S +P +   + S +   +  +L  RL+R+R+V   F ++EKD
Sbjct:   124 RKQIAFKYLRSWFLLDLVSTIPSEAAMRISSQSYGLFNML--RLWRLRRVGALFARLEKD 181

Query:   200 IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE 259
                NY + R  KL+ V L+  H AAC +Y +A          TWIG+      + A+F E
Sbjct:   182 RNFNYFWVRCAKLVCVTLFAVHCAACFYYLIAAR--NSNPAKTWIGA------NVANFLE 233

Query:   260 IGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319
                W  Y+TSMY S+ T+TTVGYGD+H VN +EM+F + Y+ F++ L AYLIGNMT L+V
Sbjct:   234 ESLWMRYVTSMYWSITTLTTVGYGDLHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVV 293

Query:   320 KG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS---YTEASVLQDIPIS 375
              G S+T  FRD +     + +RN L   ++DQ++ HL L+Y +      +   L  +P +
Sbjct:   294 HGTSRTRNFRDTIQAASNFAHRNHLPPRLQDQMLAHLCLKYRTDSEGLQQQETLDALPKA 353

Query:   376 IRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVC 435
             IR+ IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ +       Y + 
Sbjct:   354 IRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV 413

Query:   436 LGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTN 495
              G  + V ++  GTE  V  +      GE+ +LC  PQ +TV+   LC+LLR+++ +F N
Sbjct:   414 NGTADLVDVD-TGTESIVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLN 472

Query:   496 IIDIYFCDGRKVLTNLLQG-KE-SDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY 553
             II     DG  ++ NLLQ  KE +D  +  +  +I   +++ + +L L +  AA   D  
Sbjct:   473 IIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDL 532

Query:   554 QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
              L  L++ G DPN +D +GR+PLH+AAS+G    +  L++   D N +D  G+ PL EA+
Sbjct:   533 LLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAM 592

Query:   614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTP- 672
               G++    +L++ G++++  + G F CTA  +G+  LLK ++ +G D  TR     T  
Sbjct:   593 VEGHEKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVLHGGDV-TRPRATGTSA 651

Query:   673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
             LH A  E    M K L+E GA V  +D  G TP D     G++++  L  +
Sbjct:   652 LHTAVCEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDIKALFRE 702

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 911 (325.7 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 215/655 (32%), Positives = 353/655 (53%)

Query:    58 RHFS-RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAF 116
             RH   R  +  P +  YRAW  F++I  +Y++  +P EFGF +     L +LD V    F
Sbjct:    62 RHIKLRCFIVSPFDPRYRAWDWFLVILVLYTAWASPFEFGFLQTPRAPLSILDNVVNGFF 121

Query:   117 LFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAV 175
               DIVL F +A+ D  TY L+     IA RY  +  I D+ S +P++L         +  
Sbjct:   122 AVDIVLTFFVAFLDKATYLLVDDPKRIAWRYTSTWLIFDVVSTVPYELFGSLLHNTIQGY 181

Query:   176 RYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
                  +RL+R+ +VS+ F ++EKD + NY + R  KL+ V L+  H  AC  Y +A   P
Sbjct:   182 GIFSMLRLWRLHRVSKCFARLEKDRKYNYFWIRCTKLLLVSLFVVHCGACFCYSIAAHYP 241

Query:   236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
                       S+     + A++++      Y+T+MY S+ T +T GYGD+H  N  E  F
Sbjct:   242 DP--------SMTFMALAEANWKQKSLLIRYVTAMYWSITTFSTTGYGDIHGNNAEERAF 293

Query:   296 IMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             I+ Y+ F++ L AY+IGNMT L+V   S+T  FRD +     +  RN L   +++Q++ H
Sbjct:   294 ILFYMIFNLGLLAYIIGNMTNLVVHVTSRTRNFRDTIQAASAFAQRNNLPLGLQEQMVAH 353

Query:   355 LRLQYESS---YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH 411
             L L+Y +      +  ++  +P +IR+ IS  L+   ++K  LF G S++ + Q+V  + 
Sbjct:   354 LSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISNDLLFQLVSEMK 413

Query:   412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
              E+F P E ++ +       Y +  G ++ +    NG +  V        FGEV +LC  
Sbjct:   414 AEYFPPKEDVILRNEAPSDFYIMVTGAVDIIA-RVNGVDQVVGEAQTGHVFGEVGVLCYR 472

Query:   472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG-KES-DLRLKQLQSDIT 529
             PQ +TV+   L +LLR+++ +F N++     DG  ++ NLLQ  K+S D  +K + ++  
Sbjct:   473 PQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDPVMKGILAETE 532

Query:   530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
               +++ + +L L +  AA  GD   L  L++ G++PN TD +GR+ LH+AAS+G +  + 
Sbjct:   533 LMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGSQYCVV 592

Query:   590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
              L++ G D N++D+ G+ PL EAI   ++  A LL + GA+L+ +  G F C AV + + 
Sbjct:   593 LLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLAVGQNNL 652

Query:   650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNT 704
             + LK ++  G D +  D +  T LH A SEG   + + L+E GA +   D +G T
Sbjct:   653 NALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGWT 707

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 229/696 (32%), Positives = 366/696 (52%)

Query:    27 RESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVY 86
             RE      +L  N +S L   P   +  +     S   +  P +  YR W  ++++   Y
Sbjct:    29 REEEYDASSLSLNNLSKLILPPLGVASYNQNHIRSSGWIISPMDSRYRCWEFYMVLLVAY 88

Query:    87 SSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIAL 145
             S+   P E  F     K NL + D +  + F  DIVL F +AY D +T  L+ +   IA+
Sbjct:    89 SAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVDIVLTFFVAYIDERTQLLVREPKQIAV 148

Query:   146 RYLRSSFIIDLFSCMPWDLI-YKASGRKE---AVRYLLWIRLYRVRKVSQFFHKMEKDIR 201
             RYL + F++D+ S +P+D I Y  +G          L  +R +R+R+V   F ++EKDIR
Sbjct:   149 RYLSTWFLMDVASTIPFDAIGYLITGTSTLNITCNLLGLLRFWRLRRVKHLFTRLEKDIR 208

Query:   202 INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIG 261
              +Y + R  +L++V L+  H A C +Y +A   P   +G TW  ++        +F E  
Sbjct:   209 YSYFWIRCFRLLSVTLFLVHCAGCSYYLIADRYP--HQGKTWTDAIP-------NFTETS 259

Query:   262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
                 YI ++Y S+ TMTTVGYGD+HA N  EMVFI +Y+ F++ L AYLIGNMT L+V+G
Sbjct:   260 LSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVFITVYMLFNLGLTAYLIGNMTNLVVEG 319

Query:   322 SK-TEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAK 379
             ++ T +FR+ +     ++NRNRL   ++DQI+ ++ L++++ S  +  ++  +P SI   
Sbjct:   320 TRRTMEFRNSIEAASNFVNRNRLPPRLKDQILAYMCLRFKAESLNQQHLIDQLPKSIYKS 379

Query:   380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
             I Q L+LP +EKV LFKG S E +  +V ++  E+  P E ++ +    D +Y +  G++
Sbjct:   380 ICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV 439

Query:   440 EEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDI 499
             E +  E    E  +  L     FGEV  LC  PQ YT Q   L +LLR+        + I
Sbjct:   440 EIIDSEME-RESVLGTLRCGDIFGEVGALCCRPQSYTFQTKSLSQLLRLKTSFLIETMQI 498

Query:   500 YFCDGRKVLTNLLQG--KESDLRLKQLQSDITF-HISKHEAELALKVNSAAYHGDLYQLE 556
                D   +L N LQ   K S+L +  L++     +       +A  + +    G+   L+
Sbjct:   499 KQQDNATMLKNFLQHHKKLSNLDIGDLKAQQNGENTDVVPPNIASNLIAVVTTGNAALLD 558

Query:   557 GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
              L++A   P+ TD  G++PLH+AASRGYE+ +  L++ G +I+++D  GN+ L EAI   
Sbjct:   559 ELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLVLLKHGCNIHIRDVNGNSALWEAIISK 618

Query:   617 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
             +     +L    A  +   AG  LC A  + + +++K +L  G++ +T D+   T L VA
Sbjct:   619 HYEIFRILYHFAAISDPHIAGDLLCEAAKQNNVEVMKALLKQGLNVDTEDHHGVTALQVA 678

Query:   677 ASEGLYLMAKLLVEAGASVFPKDRWGN-TPLDEGRM 711
              +E    M  LL   GA V   +     TPL++ R+
Sbjct:   679 MAEDQMDMVNLLATNGADVVCVNTHNEFTPLEKLRV 714

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
 Identities = 162/464 (34%), Positives = 267/464 (57%)

Query:    62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             R  +  P N  YRAW  ++++  +YS+   P +F F       ++++D +    F  DI+
Sbjct:    48 RKHIISPFNPRYRAWEMWLVLLVIYSAWICPFQFAFITYKKDAIFIIDNIVNGFFAIDII 107

Query:   122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD---LIYKASGRKEAVRYL 178
             L F +AY DS +Y L+     IA+RYL + F  D+ S  P+    L++  +G +   R L
Sbjct:   108 LTFFVAYLDSHSYLLVDSPKKIAIRYLSTWFAFDVCSTAPFQPLSLLFNYNGSELGFRIL 167

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+VS  F ++EKDIR NY + R  KLI+V L+  H A C  Y +A   P  +
Sbjct:   168 SMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLISVTLFAIHCAGCFNYLIADRYPNPR 227

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIG++      Y +F+E   W  Y+T++Y S+ T+TT GYGD HA N REM+F + 
Sbjct:   228 K--TWIGAV------YPNFKEASLWNRYVTALYWSITTLTTTGYGDFHAENPREMLFDIF 279

Query:   299 YVSFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             ++ F++ L AYLIGNMT L+V   S+T  FRD +    ++ +RN+L  DI+DQ++ H+ L
Sbjct:   280 FMMFNLGLTAYLIGNMTNLVVHWTSRTRTFRDSVRAASEFASRNQLPHDIQDQMLSHICL 339

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             ++++    +   L ++P +IR+ I+  L+ P +  + LF+G S  F+ Q+V  +  E+F 
Sbjct:   340 KFKTEGLKQQETLNNLPKAIRSSIANYLFFPIVHNIYLFQGVSRNFLFQLVSDIDAEYFP 399

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
             P E I+ +      LY +  G ++   +  +G + +        +FGEV +L   PQP+T
Sbjct:   400 PKEDIILQNEAPTDLYILVSGAVDFT-VYVDGHDQFQGKAVIGETFGEVGVLYYRPQPFT 458

Query:   477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL---LQGKES 517
             V+  EL ++LRI + S  + +  +  DGR ++ NL   L+G++S
Sbjct:   459 VRTTELSQILRISRTSLMSAMHAHADDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
 Identities = 165/466 (35%), Positives = 269/466 (57%)

Query:    62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             R  +  P +  +R W  +++I  +YS+   P EF F       L+++D +    F  DI+
Sbjct:    48 RKHIISPFDPRFRGWEMWLVILVIYSAWICPFEFAFITYKKDALFIIDNIVNGFFAIDII 107

Query:   122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD---LIYKASGRKEAVRYL 178
             L F +AY DS +Y L+ K   IA+RYL + F  D+ S  P+    L++K +G +   R L
Sbjct:   108 LTFFVAYLDSHSYLLVDKPKKIAIRYLSTWFAFDVCSTAPFQSLSLLFKYNGSEIGFRVL 167

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+VS  F ++EKDIR NY ++R  KLI+V L+  H A C  Y +A       
Sbjct:   168 SMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFAYLIADQYHDPT 227

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIG++      Y +F+E   W  Y+T++Y S+ T+TT GYGD+HA N REM+F + 
Sbjct:   228 K--TWIGAV------YPNFKETSVWSRYVTALYWSITTLTTTGYGDLHAENPREMLFFVF 279

Query:   299 YVSFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             ++ F++   +YLIGNMT L+V   S+T  FRD +    ++ +RN+L  +I+DQ++ H+ L
Sbjct:   280 FMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNQLPPNIQDQMLSHICL 339

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             ++++    +   L  +P +IR+ I+  L+ P ++ V LF G S  F+ Q+V  +  E+F 
Sbjct:   340 KFKTEGLKQQEALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNFLFQLVSDIDAEYFP 399

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLE-EVGIEENGTEDYVS-YLHPNSSFGEVSILCNIPQP 474
             P E ++ +      LY +  G ++  V +   G ED V        +FGE+ +LC  PQP
Sbjct:   400 PREDVILQNEAPTDLYILVSGAVDFTVYV---GEEDQVQGKAVVGDAFGEIGVLCYTPQP 456

Query:   475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL---LQGKES 517
             +TV+  EL ++LRI K+S  + +  +  DGR ++ NL   L+G++S
Sbjct:   457 FTVRTTELSQILRISKKSLMSAMRAHVEDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 163/468 (34%), Positives = 269/468 (57%)

Query:    64 LVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQ 123
             +V H D R YR W  F++I   YS+  +  E  F +     L  +D+V    F  DI+L 
Sbjct:    78 IVLHFDRR-YRLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILT 136

Query:   124 FCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKAS----GRKEAVRYL 178
             F ++Y D+ TY  +     IA RYL+S +F++D+ S +P   IYK      GR +A  +L
Sbjct:   137 FFVSYLDNTTYLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFL 196

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+V++ F ++EKD   NY   R++KL+ V ++  H+A CI Y++A   P   
Sbjct:   197 NLLRLWRLRRVAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPT 256

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIGS         DF+E   W  Y  SMY S+VT+TTVGYGD+HAVN RE  F M 
Sbjct:   257 D--TWIGS------QVEDFKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMF 308

Query:   299 YVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             Y+ F++ L +Y+IG MT L+V G+ +T   R  + D+++Y ++NRL   +R+Q++ H++L
Sbjct:   309 YMLFNIGLTSYIIGIMTNLVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQL 368

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             +++++   +  VLQD+P +IR+ I+Q L+   IE+  LFKG     + Q+V ++  E+F 
Sbjct:   369 KFKTAELRQEEVLQDLPKAIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLVSQIQAEYFP 428

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
             P   I+ +  +    Y +  G ++ +   +  +E  ++ L P S  GE+ ++ NIPQP+T
Sbjct:   429 PKMEIILQNEIPTDFYVIVSGGVDIIA-SKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFT 487

Query:   477 VQVCELCRLLRIDKQSFTNIIDI-YFCDGRKVLTNL---LQGKESDLR 520
             V+   L +++RI    F  ++      D + ++ N    L+G   +L+
Sbjct:   488 VRTRRLSQVIRIGHHKFKEMVQSDNDVDAKMIIANFMTYLKGLNDELK 535

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 115/419 (27%), Positives = 207/419 (49%)

Query:    65 VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLY----VLDIVGQIAFLFDI 120
             V  P   WY  W   I +  +Y+     V    F  L K  Y    VLD V  + ++ D+
Sbjct:   132 VLDPAGDWYYRWLFLIALPVLYNWCLL-VARACFSDLQKGYYIVWLVLDYVSDVVYIADL 190

Query:   121 VLQFCLAYRDSQTYRLICKRTPIALR--YLRS-SFIIDLFSCMPWDLIYKASG-RKEAVR 176
              ++    + +     L+ K T   LR  Y+ +  F +D+ S +P DLIY A G     VR
Sbjct:   191 FIRLRTGFLEQG---LLVKDTK-KLRDNYIHTMQFKLDVASIIPTDLIYFAVGIHNPEVR 246

Query:   177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 236
             +    RL    ++ +FF + E       +F RI  LI   L   H  ACI+Y ++ ++  
Sbjct:   247 FN---RLLHFARMFEFFDRTETRTSYPNIF-RISNLILYILIIIHWNACIYYAISKSIGF 302

Query:   237 EQEGYTWI-GSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
               +  TW+  ++   +Y Y   RE      YI  +Y S +T+TT+G      V   E +F
Sbjct:   303 GVD--TWVYPNITDPEYGYLS-RE------YIYCLYWSTLTLTTIGETPP-PVKDEEYLF 352

Query:   296 IMIYVSFDMILGAYLIGNMTALIVKGSKTE-KFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             ++      +++ A ++GN+ ++I   + T  +F+ K+  +  Y+   ++ +++  ++I  
Sbjct:   353 VIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIRW 412

Query:   355 LRLQY--ESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHE 412
                 +  + S  E  VL+++P  +RA+I+  ++L  ++KV +F+ C +  + ++V++L  
Sbjct:   413 FDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRP 472

Query:   413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
             + F PG+ I  KG++  ++Y +  GKL  V   ++G   Y + L   S FGE+SIL NI
Sbjct:   473 QVFSPGDYICRKGDIGKEMYIIKEGKLAVVA--DDGVTQY-ALLSAGSCFGEISIL-NI 527

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q03041 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 115/419 (27%), Positives = 207/419 (49%)

Query:    65 VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLY----VLDIVGQIAFLFDI 120
             V  P   WY  W   I +  +Y+     V    F  L K  Y    VLD V  + ++ D+
Sbjct:   132 VLDPAGDWYYRWLFLIALPVLYNWCLL-VARACFSDLQKGYYIVWLVLDYVSDVVYIADL 190

Query:   121 VLQFCLAYRDSQTYRLICKRTPIALR--YLRS-SFIIDLFSCMPWDLIYKASG-RKEAVR 176
              ++    + +     L+ K T   LR  Y+ +  F +D+ S +P DLIY A G     VR
Sbjct:   191 FIRLRTGFLEQG---LLVKDTK-KLRDNYIHTMQFKLDVASIIPTDLIYFAVGIHNPEVR 246

Query:   177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 236
             +    RL    ++ +FF + E       +F RI  LI   L   H  ACI+Y ++ ++  
Sbjct:   247 FN---RLLHFARMFEFFDRTETRTSYPNIF-RISNLILYILIIIHWNACIYYAISKSIGF 302

Query:   237 EQEGYTWI-GSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
               +  TW+  ++   +Y Y   RE      YI  +Y S +T+TT+G      V   E +F
Sbjct:   303 GVD--TWVYPNITDPEYGYLS-RE------YIYCLYWSTLTLTTIGETPP-PVKDEEYLF 352

Query:   296 IMIYVSFDMILGAYLIGNMTALIVKGSKTE-KFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             ++      +++ A ++GN+ ++I   + T  +F+ K+  +  Y+   ++ +++  ++I  
Sbjct:   353 VIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIRW 412

Query:   355 LRLQY--ESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHE 412
                 +  + S  E  VL+++P  +RA+I+  ++L  ++KV +F+ C +  + ++V++L  
Sbjct:   413 FDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRP 472

Query:   413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
             + F PG+ I  KG++  ++Y +  GKL  V   ++G   Y + L   S FGE+SIL NI
Sbjct:   473 QVFSPGDYICRKGDIGKEMYIIKEGKLAVVA--DDGVTQY-ALLSAGSCFGEISIL-NI 527

GO:0007608 "sensory perception of smell" evidence=ISS

GO:0005216 "ion channel activity" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8S6	SKOR_ARATH	No assigned EC number	0.7076	0.9878	0.9794	yes	no
Q653P0	KOR1_ORYSJ	No assigned EC number	0.6370	0.9914	0.9487	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	821
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-141
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-29
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	6e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-21
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-18
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-17
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	5e-16
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	2e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-15
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-13
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-12
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	3e-12
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-12
pfam11834	69	pfam11834, DUF3354, Domain of unknown function (DU	8e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	3e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-07
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	8e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-06
smart00248	30	smart00248, ANK, ankyrin repeats	1e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	3e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	8e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	0.002
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.004

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  437 bits (1125), Expect = e-141
 Identities = 253/784 (32%), Positives = 412/784 (52%), Gaps = 39/784 (4%)

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFD 119
           S   +  P +  YR W   +++   YS+   P E  F     K  L + D V  + F  D
Sbjct: 49  SDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVD 108

Query: 120 IVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD-LIYKASGR-KEAVRY 177
           IVL F +AY D +T  L+  R  IA+RYL + F++D+ S +P+  L Y  +G  K  + Y
Sbjct: 109 IVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSY 168

Query: 178 LLW--IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
            L   +R +R+R+V Q F ++EKDIR +Y + R  +L++V L+  H A C++Y +A   P
Sbjct: 169 SLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP 228

Query: 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
              +G TWIG++        +FRE   W  YI+++Y S+ TMTTVGYGD+HAVN  EM+F
Sbjct: 229 --HQGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280

Query: 296 IMIYVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
           I+ Y+ F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++ RNRL   ++DQI+ +
Sbjct: 281 IIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAY 340

Query: 355 LRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEE 413
           + L++++ S  +  ++  +P SI   I Q L+LP +EKV LFKG S E +  +V ++  E
Sbjct: 341 MCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAE 400

Query: 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV-SYLHPNSSFGEVSILCNIP 472
           +  P E ++ +    D +Y V  G++E   I+  G ++ V   L     FGEV  LC  P
Sbjct: 401 YIPPREDVIMQNEAPDDVYIVVSGEVEI--IDSEGEKERVVGTLGCGDIFGEVGALCCRP 458

Query: 473 QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG--KESDLRLKQLQSDITF 530
           Q +T +   L +LLR+   +    +     D   +L N LQ   +  DL +  L  D   
Sbjct: 459 QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGD--- 515

Query: 531 HISKH-EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
           +  +H +  +A  + + A  G+   LE L++A  DP+  D  GR+PLH+AAS+GYE+ + 
Sbjct: 516 NGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVL 575

Query: 590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
            L++   +++++D  GNT L  AI   +     +L    +  +   AG  LCTA  R D 
Sbjct: 576 VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDL 635

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK---DRWGNTPL 706
             +K +L  G++ ++ D+   T L VA +E    M +LL+  GA V      D +  T L
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTEL 695

Query: 707 DE---GRMCGNKNLI-----KLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWD 758
            E    R  G+   I         D         P   Q T+       + +++  HP  
Sbjct: 696 RELLQKRELGHSITIVDSVPADEPDLGRDGGSR-PGRLQGTSSDNQCRPRVSIYKGHPLL 754

Query: 759 AKE--SRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDC-ILSSEGGKILDVDMINDDQKLY 815
             E      G ++ +P ++++L   A E+L F      + + EG +I  +++I D+ KL+
Sbjct: 755 RNERCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEVIRDNDKLF 814

Query: 816 LIQE 819
           ++++
Sbjct: 815 VVED 818

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  123 bits (311), Expect = 4e-33
 Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 31/156 (19%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           N  D DGR+PLHLAAS G+ E++  L++ G D+N KDN G TPL  A K G+        
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------- 52

Query: 626 KEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 685
                                   +++K +L  G D N RD D  TPLH+AA  G   + 
Sbjct: 53  -----------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 686 KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           KLL++ GA V  +D+ G TPL      G+  ++KLL
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  112 bits (282), Expect = 3e-29
 Identities = 57/144 (39%), Positives = 73/144 (50%), Gaps = 31/144 (21%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G L  ++ L+  GAD N  D DGR+PLHLAA  G+ EI+  L++KG D+N +D  G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           NTPL  A + GN     LL+K GA                               D N R
Sbjct: 74  NTPLHLAARNGNLDVVKLLLKHGA-------------------------------DVNAR 102

Query: 666 DYDLRTPLHVAASEGLYLMAKLLV 689
           D D RTPLH+AA  G   + KLL+
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 97.0 bits (242), Expect = 6e-24
 Identities = 38/115 (33%), Positives = 60/115 (52%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LF G   E + ++   L E  F  GEVI+ +G+  D LY V  G +E   ++E+G E  V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +L P   FGE+++L N P+  TV+      LL + +  F  ++  Y    R++L
Sbjct: 61  GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 88.5 bits (220), Expect = 3e-21
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G+L  ++ L+  GAD N  D D  + LHLAA  G  EI+  L++ G D+N KD  G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVE 634
           NT L  A + GN     LL++ GA +N++
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 89.5 bits (221), Expect = 6e-20
 Identities = 70/242 (28%), Positives = 96/242 (39%), Gaps = 40/242 (16%)

Query: 492 SFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGD 551
           S + ++ I  C    +L  LL     DL     +             L L +  AA    
Sbjct: 4   SLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNL--------YLELALLPAASL-- 53

Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611
             +L   +         D DGR PLH AAS+G ++I+  L+  G D+N KD  G+TPL  
Sbjct: 54  -SELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHL 112

Query: 612 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI---DPNTRDYD 668
           A   GN                             G+ ++ K +L  G      N RD D
Sbjct: 113 AALNGNP--------------------------PEGNIEVAKLLLEAGADLDVNNLRDED 146

Query: 669 LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728
             TPLH AA  G   + +LL+EAGA    ++ +G T LD     G   L+KLL D     
Sbjct: 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Query: 729 LL 730
            L
Sbjct: 207 SL 208

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 41/124 (33%), Positives = 54/124 (43%), Gaps = 33/124 (26%)

Query: 576 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           LHLAA  G  E++  L++KG D+NL D   +T L  A + GN     LL           
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLL----------- 47

Query: 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
                               L +G D N +D D  T LH+AA  G   + KLL+E GA +
Sbjct: 48  --------------------LEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Query: 696 FPKD 699
             KD
Sbjct: 88  NLKD 91

Length = 91

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 31/214 (14%)

Query: 107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLI 165
           +LD V  + F  +++L+F                     +Y RS + I+D    +P  + 
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALG--------------FKRKYFRSPWNILDFLVVLPSLVS 46

Query: 166 Y---KASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSH 221
                       +R L  +RL R+ ++ + F  +   ++ +      ++ L+ + L    
Sbjct: 47  LILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLF 106

Query: 222 IAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVG 281
           I A I   L      +             D +         + SY  ++     T+TT G
Sbjct: 107 IFAIIGVQLFGGELDKCC-----------DKNENPINGNSNFDSYGEALLWLFRTLTTEG 155

Query: 282 YGDVHAVNLREM-VFIMIYVSFDMILGAYLIGNM 314
           +GDV    L    V   I+    +ILG  L+ N+
Sbjct: 156 WGDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNL 189

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 73.5 bits (181), Expect = 5e-16
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
              F  GEVI  +G+  D LY V  GK++   ++E+G E  +++L P   FGE+++L   
Sbjct: 1   LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGE 60

Query: 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
           P+  TV       LL I ++ F  +++  
Sbjct: 61  PRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK   +E + ++   L    +  GEVI+ +G+V D  Y +  G++E   + E+G E  V
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 454 SYLHPNSSFGEVSILCNIPQPY--TVQVCELCRLLRIDKQSFTNII 497
             L P   FGE+++L N  +         EL  LLRID + F  ++
Sbjct: 61  GTLGPGDFFGELALLTNSRRAASAAAVALELATLLRIDFRDFLQLL 106

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           L  A   G+ +L+K +L  G D N  D D  T LH+AA  G   + KLL+E GA V  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 700 RWGNTPLDEGRMCGNKNLIKLL 721
           + GNT L      GN  ++KLL
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 74.7 bits (184), Expect = 6e-14
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 22/166 (13%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRG---YEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           L+ AGAD N     G++PLHL         ++I+  L++ G D+N  +  G TPL   + 
Sbjct: 33  LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLY 92

Query: 615 YGND-GAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDL 669
                    LL+K GA +N ++        +  +    +  +++ +L  G D N  D   
Sbjct: 93  NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG 152

Query: 670 RTPLHVAASEGLYL--------MAKLLVEAGASVFPKDRWGNTPLD 707
            TPL V       L        + +LL++AGA V+  D    + L 
Sbjct: 153 MTPLAV------LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 74.3 bits (183), Expect = 8e-14
 Identities = 50/186 (26%), Positives = 74/186 (39%), Gaps = 28/186 (15%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEE-IMTFLIQKGVDINLKDNFGNTPLL-----E 611
           L+ AGAD N  +  G +PLHL         ++  LI+ G D+N KD  G TPL       
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGF 128

Query: 612 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVA------RGDSDLLKRVLSNGIDPNTR 665
            I         LL+++GA +N  +   +  T +A        + +LL+ ++  G D    
Sbjct: 129 NINP---KVIRLLLRKGADVNALDL--YGMTPLAVLLKSRNANVELLRLLIDAGADVYAV 183

Query: 666 DYDLRTPLHVAASEGLYLMA-----KLLVEAGASVFPKDRWGNTPLDEGRM---CGNKNL 717
           D   R+ LH                + L+ AG      D  GNTPL        C    +
Sbjct: 184 DDRFRSLLHHHL---QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLV 240

Query: 718 IKLLED 723
           + LL  
Sbjct: 241 LPLLIA 246

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 72.7 bits (179), Expect = 2e-13
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 22/159 (13%)

Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAA--SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA 612
           +  LIRAG DP  TD  G +PLH  A  S     ++  L+  G+ IN ++ +G TPL  A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 613 IKYGNDGAASLLVKEGASLNV-----EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY 667
             + N  A   L+  GA +N          S     V   +   ++  L+      T   
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSL---MVRNNNGRAVRAALAKNPSAETVA- 320

Query: 668 DLRTPLHVAASEGLY--------LMAKLLVEAGASVFPK 698
              T L+ A+  G           +AK+++    S+ P+
Sbjct: 321 --AT-LNTASVAGGDIPSDATRLCVAKVVLRGAFSLLPE 356

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 71.9 bits (176), Expect = 4e-13
 Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 5/179 (2%)

Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           ++  +AEL   ++ A   GDL  ++ L   GAD N  D +G  P+H+A    + +I+  L
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Query: 592 IQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDS 649
           ++KG   N+KDN G +PL  A +YG+     LL+  G  +  +    F  L  A+    S
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS 236

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL-MAKLLVEAGASVFPKDRWGNTPLD 707
            +   +L N    N +D D  TPLH A +    + +  +L+   A +  KD  G  P+D
Sbjct: 237 AI--ELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPID 293

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 70.4 bits (172), Expect = 1e-12
 Identities = 59/220 (26%), Positives = 92/220 (41%), Gaps = 36/220 (16%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDY------DGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           Y GD+  +E +I+     N+ +       +  +PL  A   G  +I+   I+ G DIN  
Sbjct: 10  YSGDIEAIEKIIK-----NKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI 64

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNV-------------------------EEA 636
           +     PLL AIK G      LL+  G   ++                          E 
Sbjct: 65  NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAEL 124

Query: 637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
            +FL  A+ +GD + +K +   G D N  D +   P+H+A     + + KLL+E GA   
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184

Query: 697 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 736
            KD  G +PL      G+   IKLL D  +  + +  +GF
Sbjct: 185 VKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 28/57 (49%), Positives = 37/57 (64%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           AA +G+L  ++ L+  GAD N  D DG + LHLAA  G  EI+  L++ G DINLKD
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            +++ PL     SE +  + ++L       GEV+  +G   D LY +  G ++     E+
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G E  + +L P   FGE+++L   P+  +        +L I ++ F  ++         +
Sbjct: 61  GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120

Query: 508 LTNLLQGKESDLRLKQLQSDIT 529
           L  L +      RL+Q    ++
Sbjct: 121 LRLLAR------RLRQALERLS 136

Length = 214

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 69.5 bits (170), Expect = 4e-12
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           LC   A GD+   + +L+ G DPN RDYD RTPLH+A + G   + ++L+E GA     D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 700 RWGNTPLDEGRMCGNKNLIKLL 721
           + G TPL+     G + +++LL
Sbjct: 146 KDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|221253 pfam11834, DUF3354, Domain of unknown function (DUF3354)

 Score = 57.9 bits (141), Expect = 8e-11
 Identities = 18/72 (25%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 746 TRKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDV 805
            ++ T+   HP +  +    G ++ +P ++++L++ A E+  F     +L+ +G +I D+
Sbjct: 1   PKRVTIHRGHPPEKGK--EAGKLILLPGSLEELLEIAGEKFGFAP-TKVLNEDGAEIDDI 57

Query: 806 DMINDDQKLYLI 817
           ++I D   LYL+
Sbjct: 58  EVIRDGDHLYLV 69

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is about 60 amino acids in length. Length = 69

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 63.1 bits (154), Expect = 3e-10
 Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 18/167 (10%)

Query: 555 LEGLIRAGADPNRTDYDGRSPLH-LAASRGYE-EIMTFLIQKGVDINLKDNFGNTPL--- 609
           +  L+R GAD N  D  G +PL  L  SR    E++  LI  G D+   D+   + L   
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Query: 610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD---LLKRVLSNGIDPNTRD 666
           L++ K        L+         +  G+    ++A G S    L+  +L  GI  N R+
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN 254

Query: 667 YDLRTPLHVAASEG-----LYLMAKLLVEAGASVFPKDRWGNTPLDE 708
              +TPLH AA          L+A      GA +      GNTPL  
Sbjct: 255 RYGQTPLHYAAVFNNPRACRRLIA-----LGADINAVSSDGNTPLSL 296

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 3e-10
 Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 21/194 (10%)

Query: 485 LLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVN 544
           L+ IDK+S  +II+         +T LL    +D+ +K           +H+   AL  +
Sbjct: 133 LVYIDKKSKDDIIE-------AEITKLLLSYGADINMK----------DRHKGNTAL--H 173

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
            A  + D    E L+  GA+ N  D    SPLH A     + I+  L++ G   + +D  
Sbjct: 174 YATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC 233

Query: 605 GNTPLLEAIKYGND-GAASLLVKEGASLNVEEA-GSFLCTAVARGDSDLLKRVLSNGIDP 662
           GNTPL  ++ Y  D     LL++ G  +N +           +      LK +L  G D 
Sbjct: 234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEYGADI 293

Query: 663 NTRDYDLRTPLHVA 676
           N+ +    TPL  A
Sbjct: 294 NSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 25/54 (46%), Positives = 33/54 (61%)

Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           GR+ LH AA  G  E++ +L++KGVDIN  D  GNT L  A + GN     LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 61.5 bits (149), Expect = 7e-10
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           LI  GADP+  + D  SPLHLA   G  + +  LI     ++++D  G TPL+ A+  G+
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180

Query: 618 DGAASLLVKEGASLN-VEEAG--SFLCTAVARGDSDLLKRVLSNGIDPN 663
                +L+  GA+++   + G  + LC A+     D+++  +  G D N
Sbjct: 181 IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 61.8 bits (150), Expect = 9e-10
 Identities = 33/86 (38%), Positives = 47/86 (54%)

Query: 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
           L +++   A  GD      L+  GADPN  DYDGR+PLH+A + G+ +++  L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 599 NLKDNFGNTPLLEAIKYGNDGAASLL 624
            L D  G TPL  A + G      LL
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 609
           L+  G  D N TD +G +PLHLAA  G  E++ +L++ GVD+NL+D+ G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 60.0 bits (145), Expect = 3e-09
 Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 3/178 (1%)

Query: 550 GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL 609
           G+L     L+  G +PN   YDG SP+ LA      E +  L++ G   ++K     + L
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESEL 72

Query: 610 LEAIKYGNDGAASLLVKEGASLN---VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
            +A++ G+  A   L+  G   +    ++  + L  A      D++K +++ G DP+  +
Sbjct: 73  HDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPN 132

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            D  +PLH+A   G     +LL++  A +  +D  G TPL      G+  + K+L D+
Sbjct: 133 TDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 51.8 bits (125), Expect = 5e-09
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           DG +PLHLAA  G+ E++  L++ G D+N +D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 1e-08
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 10/174 (5%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYE-EIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
           L+  GAD N  +  G +PL+L A  GY+ E +  LI  G D+N  D    TPL +A    
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLD 352

Query: 617 -NDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL 673
            N      L++ GA++N  +    + +  A  R +  ++  +L  G D       + T L
Sbjct: 353 RNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTAL 412

Query: 674 HVA-ASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK---NLIKLLED 723
           H A      Y+  K L++ GA+V  K++  +TPL     C      ++I++L D
Sbjct: 413 HFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA--CKKNCKLDVIEMLLD 464

Length = 682

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 25/76 (32%), Positives = 36/76 (47%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L+  G   N  D  G +PLH A      E + +L+  G + NL + +G+TPL  AI   N
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN 237

Query: 618 DGAASLLVKEGASLNV 633
                LL+  G S+  
Sbjct: 238 KEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 3e-08
 Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           ++ A   GD+  +E L+  G   +   Y DG +PLHLA      +IM  LI +G D ++ 
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNG 659
           +    +PL  A+  G+     LL+   A L++E+      L  A+A+GD  + K +L +G
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 660 IDPN 663
            + +
Sbjct: 192 ANID 195

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           AA  G L  ++ L+  G D NRTD DG + LH+AA  G  E++  L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 55.0 bits (133), Expect = 1e-07
 Identities = 46/147 (31%), Positives = 66/147 (44%), Gaps = 26/147 (17%)

Query: 578 LAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA---SLLVKEGASLNVE 634
           L AS    E +  L+  G D+N +  +G TPL   + Y ++       LL++ GA +N  
Sbjct: 20  LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP 79

Query: 635 EAGSF------LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL----- 683
           E   F      L  A      D++K ++  G D N +D   RTPLHV      YL     
Sbjct: 80  ERCGFTPLHLYLYNATTL---DVIKLLIKAGADVNAKDKVGRTPLHV------YLSGFNI 130

Query: 684 ---MAKLLVEAGASVFPKDRWGNTPLD 707
              + +LL+  GA V   D +G TPL 
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPLA 157

Length = 471

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 54.7 bits (131), Expect = 1e-07
 Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615
           E L+  GAD N  D    +P+H AA RG  +++  L+  G D+N+      + L  A+  
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDS 221

Query: 616 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHV 675
            N      ++   +++N  +    L  A+   D +    +   G   N+ D    TPLH 
Sbjct: 222 KNIDTIKAIIDNRSNINKNDLS--LLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 676 AA-SEGLYLMAKLLVEAGASVFPKDRWGNTPL 706
           A+ +  L  +   L+E GA V  K+  G TPL
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 54.3 bits (130), Expect = 1e-07
 Identities = 51/194 (26%), Positives = 79/194 (40%), Gaps = 44/194 (22%)

Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +E L+  G  PN TD DG  PLH+A+      I+  L+  G D N  D    TPL     
Sbjct: 55  VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL-- 112

Query: 615 YGNDGAA----SLLVKEGASLN--VEEAGSFLCTAVARGDSDLLKRVLSN---------- 658
            G D       +LLV+ GA +N  V+E G     A       + K+++S           
Sbjct: 113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKF 172

Query: 659 -------------------------GIDPNTRDYDLRTPLHVAASEGLYLMAKL-LVEAG 692
                                    GI P+  D+D  TPLH+  S+ +  +  + L+   
Sbjct: 173 GKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPS 232

Query: 693 ASVFPKDRWGNTPL 706
             V  ++++G++PL
Sbjct: 233 TDVNKQNKFGDSPL 246

Length = 446

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 54.7 bits (131), Expect = 2e-07
 Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 6/122 (4%)

Query: 587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAV 644
           I   L++ G D+N KD +  TP+  A + GN    +LL+  GA +N+   +  S L  AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 645 ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNT 704
              + D +K ++ N  + N  D  L   L    +E L   + LL +AG SV   D   NT
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSL---LKAIRNEDLE-TSLLLYDAGFSVNSIDDCKNT 275

Query: 705 PL 706
           PL
Sbjct: 276 PL 277

Length = 682

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 254 YADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGN 313
           Y+   E   W  ++ ++Y S VT+TT+GYGD+  +     +F +IY+   + L    +  
Sbjct: 14  YSLEEEGWGW-DFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAV 72

Query: 314 MT 315
           + 
Sbjct: 73  LG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)

Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-LCTAVARGDSDLLKRV 655
           + + K       L              L+ +      +  G   L +A ++GD  ++K +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 656 LSNGIDPNTRDYDLRTPLHVAA-----SEGLYLMAKLLVEAGAS---VFPKDRWGNTPLD 707
           L++G D N +D D  TPLH+AA      EG   +AKLL+EAGA       +D  GNTPL 
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 708 EGRMCGNKNLIKLLEDAKSTQLLEFPHG--FQDTADKRN 744
              + G+ ++++LL +A +       +G    D A K  
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNG 191

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 27/194 (13%)

Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYE-----EIMTFLIQKGVDINLKDNFGNTPL 609
           ++ L+  GAD N +  +  +PLH  ++  Y      EI+  L++ G ++N  DN G TPL
Sbjct: 51  VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPL 110

Query: 610 LEAI--KYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPN 663
           L AI  K  +      L+  GA++N++ +       L     + D  +LK ++  G+D N
Sbjct: 111 LYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170

Query: 664 TRDY--------------DLR--TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
            ++               D+   TPLH A         K L++ GA+    +++G+TPL 
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLH 230

Query: 708 EGRMCGNKNLIKLL 721
              +  NK + KLL
Sbjct: 231 IAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689
           + L  A   G  +L+K +L  G+D N  D D  T LH+AA  G   + KLL+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.2 bits (125), Expect = 8e-07
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 10/179 (5%)

Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT--PLLEA 612
           ++ L+  G + N+ D+   +PLH+      +  M  +I+       K +   T   + +A
Sbjct: 53  VKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIR----SINKCSVFYTLVAIKDA 108

Query: 613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG--DSDLLKRVLSNGIDPNTRDYD-L 669
               N     +++             ++         ++++ K +LS G D N +D    
Sbjct: 109 FNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKG 168

Query: 670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK-LLEDAKST 727
            T LH A       + +LL+  GA+V   D+  N+PL       NK ++  LLE+  ST
Sbjct: 169 NTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST 227

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)

Query: 586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTA 643
           +I   L+  G++ N +   G +P+  A+K+ +  A  LL+K GA  +V+     S L  A
Sbjct: 16  DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDA 75

Query: 644 VARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLVEAGAS--VFPKDR 700
           V  GD   ++ +L  G   +   Y D  TPLH+A       + KLL+  GA   +   D+
Sbjct: 76  VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK 135

Query: 701 WGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 736
           +  +PL    M G+   I+LL D K+   +E   G 
Sbjct: 136 F--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGC 169

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 52.0 bits (124), Expect = 1e-06
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNTPL 609
           D   +  LI  GAD N  D    +PLH A++    ++I+  L++ G ++N +D    TP+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Query: 610 LEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDL-LKRVLSNGIDPNTRD 666
             A    N    + L+  GA +    ++ G+ L  A+   +  + +K ++  G + N+++
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439

Query: 667 YDLRTPLHVAASEGLYL-MAKLLVEAGASV 695
            DL TPLH A  +   L + ++L++ GA V
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLLDNGADV 469

Length = 682

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 51.8 bits (124), Expect = 1e-06
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           LI  GAD N+ + DG +PL+   S GY    EI+ F+I+ G D  L D  G T L   ++
Sbjct: 95  LIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ 154

Query: 615 YGND---GAASLLVKEGASLNV----EEAGSFLC---TAVARGDSDLLKRVLSNGIDPNT 664
             +        LL+++G  +N     E+  +  C     + R D+D+LK  + NG   N 
Sbjct: 155 SNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK 214

Query: 665 RD 666
            +
Sbjct: 215 EN 216

Length = 489

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L+  GA  N  D +G SPLH AA  G    +  LI  G  I  K   G TPL  AI + N
Sbjct: 176 LLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIH-N 234

Query: 618 DGAASLLVKEGASLNVEEAGSFLCTAVARG---DSDLLKRVLSNGIDPNTRDYDLRTPLH 674
             A  LL+   AS+N ++         A     D D++  +L +  D + +D     P+ 
Sbjct: 235 RSAIELLINN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPID 293

Query: 675 VA 676
            A
Sbjct: 294 TA 295

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV---DINLKDNFGNTPLLEAIK 614
           L++ GA P+    D  S LH A   G  + +  L+  G    D+  KD  G TPL  A  
Sbjct: 54  LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATI 111

Query: 615 YGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTP 672
                   LL+  GA  ++     F  L  AV  GD   ++ ++ +    +  D    TP
Sbjct: 112 LKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP 171

Query: 673 LHVAASEGLYLMAKLLVEAGASV 695
           L +A ++G   + K+L+++GA++
Sbjct: 172 LIIAMAKGDIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           RT LH AA  G   + K L+E G  +   D  GNT L      GN  ++KLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           DGR+PLHLAA  G  E++  L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 668 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR 700
           D  TPLH+AA  G   + KLL+EAGA V  +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 27/197 (13%)

Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL-- 609
           +  ++ +I      + +      PL+LA      +++  L+  G DIN      +TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 610 LEAIKYG---NDGAASLLVKEGASLNVEEAGS----FLCTAVARGDSDLLKRVLSNGIDP 662
           L  IKY          LL++ GA++N  +           +       +++ +L NG + 
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 663 NTRDYDLRTPLHVAASEGLY--LMAKLLVEAGASVFPKDR----------------WGNT 704
           N ++ D    LH+          + KLL++ G  +  K+R                +G T
Sbjct: 135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFT 194

Query: 705 PLDEGRMCGNKNLIKLL 721
           PL       N   +K L
Sbjct: 195 PLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 656 LSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
           L +G ID N  D +  TPLH+AA  G   + + L++ G  +  +D  G T LD
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 623 LLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
           LL      LN  +      L  A   G  +L++ +L  G+D N RD D  T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           DG +PLHLAA  G  E++  L++ G DIN
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 10/186 (5%)

Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           ++ AA  G+   +  L+  GAD N    D  S L  A      + +  +I    +IN  D
Sbjct: 182 IHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND 241

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLN---VEEAGSFLCTAVARGDSDLLKRVLSNG 659
                 LL+AI+  +   + LL   G S+N     +       + A   S L+ ++L  G
Sbjct: 242 ----LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERG 297

Query: 660 IDPNTRDYDLRTPLHVAASEGLYLM-AKLLVEAGASVFPKDRWGNTPLDEGRMCG-NKN- 716
            D N ++    TPL++ A  G      + L+  GA V   DR   TPL +      NK+ 
Sbjct: 298 ADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDI 357

Query: 717 LIKLLE 722
           +I LLE
Sbjct: 358 VITLLE 363

Length = 682

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 34/165 (20%)

Query: 526 SDITFHISKHEAELALKVNSAAYHG-------DLYQLEGLIRA-GADPNRTDYDGRSPL- 576
            DI   + +   E    VN  A HG       D Y ++ L++  G D      DG  P+ 
Sbjct: 342 GDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIG 401

Query: 577 HLAASR-GYEEIMTFLIQKGV---------------------DINLKDNFGNTPLLEAIK 614
           HL  S  G     T+  +KG+                     DIN+ D  G T L +A++
Sbjct: 402 HLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVR 461

Query: 615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS---DLLKRVL 656
           Y      SLL++ G+ +N+     + C A+A  +S   +LLK +L
Sbjct: 462 YNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506

Length = 661

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 42.3 bits (99), Expect = 8e-04
 Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEI-MTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +++ G  P++ D+DG +PLH+  S+  + + +  L+    D+N ++ FG++PL   IK
Sbjct: 194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK 251

Length = 446

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNV 633
           GNTPL  A + G+     LL++ GA +N 
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 584 YEEIMTFLIQKGVDIN----LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN--VEEAG 637
           Y +I+  +++ G D      L +N    PL+ AI   ND AA LL++ GA +N   EEA 
Sbjct: 45  YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK 104

Query: 638 -SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
            + L  +V  G    L+ +LS G D N +  D+ TP+ +A
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144

Length = 300

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 23/125 (18%)

Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA 629
           Y G SPL+ AA  G   I+  L +   DI   D+ GNT LL                   
Sbjct: 173 YHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNT-LLHL----------------- 214

Query: 630 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT----RDYDLRTPLHVAASEGLYLMA 685
            L +E         ++    +    +L    D        ++   TPL +AA EG  ++ 
Sbjct: 215 -LVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF 273

Query: 686 KLLVE 690
           +L + 
Sbjct: 274 RLKLA 278

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	821
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	100.0
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.98
PHA02875	413	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PHA02730	672	ankyrin-like protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.91
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.89
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02884	300	ankyrin repeat protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.74
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	99.58
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.56
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.49
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.47
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.45
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.45
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.44
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.4
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.37
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.37
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.36
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.35
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.34
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.3
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.3
COG2905	610	Predicted signal-transduction protein containing c	99.28
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.26
PLN02868	413	acyl-CoA thioesterase family protein	99.24
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.21
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.16
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.13
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.13
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.01
PRK10537	393	voltage-gated potassium channel; Provisional	98.92
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.77
PF13606	30	Ank_3: Ankyrin repeat	98.7
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.68
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.62
PF13606	30	Ank_3: Ankyrin repeat	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	98.59
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.56
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.55
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.53
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.53
KOG0522	560	consensus Ankyrin repeat protein [General function	98.51
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.43
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.4
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.29
KOG2384	223	consensus Major histocompatibility complex protein	98.26
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.22
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	98.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.08
KOG0511	516	consensus Ankyrin repeat protein [General function	98.04
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.0
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.97
KOG0511	516	consensus Ankyrin repeat protein [General function	97.96
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.91
KOG2384	223	consensus Major histocompatibility complex protein	97.91
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	97.78
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	97.72
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.6
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	97.41
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	97.17
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	97.17
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	97.08
KOG2301	1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	97.03
KOG2505	591	consensus Ankyrin repeat protein [General function	96.98
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	96.91
PLN03223	1634	Polycystin cation channel protein; Provisional	96.7
KOG3614	1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	96.65
KOG2505	591	consensus Ankyrin repeat protein [General function	96.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.45
KOG2301	1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	96.41
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.28
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	95.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.8
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.79
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.47
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	95.22
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	94.41
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	93.04
KOG0498	727	consensus K+-channel ERG and related proteins, con	91.98
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	91.91
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	90.3
KOG3599	798	consensus Ca2+-modulated nonselective cation chann	90.26
PF00520	200	Ion_trans: Ion transport protein calcium channel s	87.68
PLN03223	1634	Polycystin cation channel protein; Provisional	87.31
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	82.69
cd06537	81	CIDE_N_B CIDE_N domain of CIDE-B proteins. The CID	81.14
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	81.04

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=6.9e-115  Score=1026.67  Aligned_cols=751  Identities=32%  Similarity=0.554  Sum_probs=654.4

Q ss_pred             CCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecCC-CcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEee
Q 003425           60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL-SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLIC  138 (821)
Q Consensus        60 ~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~-~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~  138 (821)
                      +.+.++|+|+++++++|+.+++++++|+++++|+.++|.... ...+.++|++++++|++||+++|+|+|++++++.+|.
T Consensus        48 ~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~  127 (823)
T PLN03192         48 GSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVR  127 (823)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEe
Confidence            355789999999999999999999999999999999996543 3458899999999999999999999999999989999


Q ss_pred             ccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcC----chhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHH
Q 003425          139 KRTPIALRYLRSSFIIDLFSCMPWDLIYKASG----RKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIA  214 (821)
Q Consensus       139 ~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~----~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (821)
                      ||++|+++|+|+||++|++|++|++++.....    ....+++++++|++|+.|+.+++.++++..+.++...+++++++
T Consensus       128 d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~  207 (823)
T PLN03192        128 DRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLS  207 (823)
T ss_pred             CHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999999999987643321    22356788889999999999999999888888777789999999


Q ss_pred             HHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHH
Q 003425          215 VELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMV  294 (821)
Q Consensus       215 ~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~  294 (821)
                      .+++++||+||+||+++...+.  .+.+|+...      +.++.+.+++.+|+.|+||+++|||||||||++|.|..|++
T Consensus       208 ~~l~~~H~~aC~~y~i~~~~~~--~~~~Wi~~~------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i  279 (823)
T PLN03192        208 VTLFLVHCAGCLYYLIADRYPH--QGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMI  279 (823)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCC--CCCchHHHh------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHH
Confidence            9999999999999999864332  345888641      23455678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhC
Q 003425          295 FIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDI  372 (821)
Q Consensus       295 ~~~~~~i~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~l  372 (821)
                      +++++|++|++++||++|++++++.+ ..+..+|+++++.+++||+++++|+.||+||++|++++|+. +.++++++++|
T Consensus       280 ~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~L  359 (823)
T PLN03192        280 FIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQL  359 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHc
Confidence            99999999999999999999999988 66778999999999999999999999999999999999975 57889999999


Q ss_pred             cHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce
Q 003425          373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (821)
Q Consensus       373 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~  452 (821)
                      |++||.++..+++.+.++++++|++++++++.+|+..++.+.|+|||.|+.+||.++++|||.+|.|+++. ..++++.+
T Consensus       360 p~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~-~~~~~e~~  438 (823)
T PLN03192        360 PKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID-SEGEKERV  438 (823)
T ss_pred             CHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE-ecCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985 55678888


Q ss_pred             EEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcCCcchh--hhhhhcccccc
Q 003425          453 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDL--RLKQLQSDITF  530 (821)
Q Consensus       453 i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~~~~~~--~~~~l~~~~~~  530 (821)
                      +..+++|++|||.+++.+.|++++++|.++|++++|++++|.++++.+|+++..++++++++.....  ....+-.+.  
T Consensus       439 l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~--  516 (823)
T PLN03192        439 VGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDN--  516 (823)
T ss_pred             eEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhc--
Confidence            9999999999999999999999999999999999999999999999999999999999887532211  111110111  


Q ss_pred             cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      .....+.++.++||.||..|+.++++.|++.|+|+|..|.+|.||||+||..|+.+++++|+++|+++|.+|.+|.||||
T Consensus       517 ~~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~  596 (823)
T PLN03192        517 GGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALW  596 (823)
T ss_pred             ccccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            11234556789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      +|+..|+.+++++|++.++..+..++.++||.|+.+|+.++++.|+++|+|+|.+|.+|+||||+|+..|+.+++++|++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999999999988888889999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHH--Hhccccccc--cC-----CCCCCccccccCCCCcccccCCCCCCcc
Q 003425          691 AGASVFPKDRWG-NTPLDEGRMCGNKNLIKLL--EDAKSTQLL--EF-----PHGFQDTADKRNPTRKCTVFPFHPWDAK  760 (821)
Q Consensus       691 ~ga~~~~~d~~g-~t~l~~A~~~~~~~i~~~L--l~~~a~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  760 (821)
                      +|||++..|..| .||++++......+...-+  .+..+....  ..     +..............+.++.+.||..++
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  756 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELLQKRELGHSITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQCRPRVSIYKGHPLLRN  756 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHHHHhhhCceeeeccCCCccccccccccccccccccccccccccCceEEEecCCCcccc
Confidence            999999999888 9999988665443321111  111110000  00     0011111122233456788899998776


Q ss_pred             c--cccCceEEEcCccHHHHHHHHHhHcCCCCCc-ccccCCCceeeeeeeeecCCeEEEeecCC
Q 003425          761 E--SRRHGIVLWIPQNIKDLIKTAAEQLDFRGGD-CILSSEGGKILDVDMINDDQKLYLIQETH  821 (821)
Q Consensus       761 ~--~~~~~~~~~lp~~~~~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~r~~~~~~~~~~~~  821 (821)
                      +  .+..|.+.++|++++|+.+.+++++|++... .+.++||++|++++|+|||||||+|+++|
T Consensus       757 ~~~~~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
T PLN03192        757 ERCCNEAGKLINLPPSLEELKAIAGEKLGFDARKAMVTNEEGAEIDSIEVIRDNDKLFVVEDED  820 (823)
T ss_pred             cccccccCeEEeCCccHHHHHHHHHHHhCCCcccceeecCCCceeeeeEEEecCCEEEEeeccc
Confidence            6  5689999999999999999999999987763 46789999999999999999999999986

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2e-83  Score=704.01  Aligned_cols=542  Identities=35%  Similarity=0.573  Sum_probs=454.3

Q ss_pred             CcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecC----------CCcCeehhHHHHHHHHHHhHhheeeEEEEe
Q 003425           61 SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG----------LSKNLYVLDIVGQIAFLFDIVLQFCLAYRD  130 (821)
Q Consensus        61 ~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~  130 (821)
                      ...++++|+|+++..|+.+++++++|++++.|++++|...          ....+.++|.++|++|++||+++|+|+|.+
T Consensus        65 ~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~  144 (727)
T KOG0498|consen   65 SRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD  144 (727)
T ss_pred             ccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence            3455999999999999999999999999999999999765          557799999999999999999999999999


Q ss_pred             CCceEEeeccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcC---------chhHHHHHHHHHHHHHHHHHHHHHhhhhhHh
Q 003425          131 SQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASG---------RKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR  201 (821)
Q Consensus       131 ~~~~~~v~~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~---------~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~  201 (821)
                      +.+.++|.||++||+||+++||+||++|++|++.++....         ......++.+.||+|+.|+.+++.++++...
T Consensus       145 ~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~  224 (727)
T KOG0498|consen  145 PSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTG  224 (727)
T ss_pred             CCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9997899999999999999999999999999998876432         2246678888899999999999999998777


Q ss_pred             hhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCC-ceeccccCCCCCccc----ccccchHHHHHHHHHHHH
Q 003425          202 INY--MFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY-TWIGSLKMGDYSYAD----FREIGFWKSYITSMYASV  274 (821)
Q Consensus       202 ~~~--~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~-~w~~~~~~~~~~~~~----~~~~~~~~~Y~~s~yw~~  274 (821)
                      +.+  ++.-+.++++.+++++||+||+||+++...+...... +|+..... .....+    +...+++.+|++|+||++
T Consensus       225 ~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s~~~kY~~aLyw~l  303 (727)
T KOG0498|consen  225 FVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYSLALKYVYALYWGL  303 (727)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchhHHHHHHHHHHHHh
Confidence            655  3334779999999999999999999998766555555 88875432 222222    566788889999999999


Q ss_pred             HHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 003425          275 VTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIG  353 (821)
Q Consensus       275 ~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~  353 (821)
                      +||||||||+.+|++..|++|+|++|++|.++||++||||+++++. .++.++|+.|++++++||++++||++||+||++
T Consensus       304 ~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~  383 (727)
T KOG0498|consen  304 STLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRR  383 (727)
T ss_pred             hHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988 888999999999999999999999999999999


Q ss_pred             HHHHHhhc--cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeE
Q 003425          354 HLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQL  431 (821)
Q Consensus       354 y~~~~~~~--~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~l  431 (821)
                      |++|+|..  +.+|++++++||+.||++|++++|.++++++|+|++++++++.+|+.+++...|+|||+|++|||+.++|
T Consensus       384 y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~m  463 (727)
T KOG0498|consen  384 YEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDM  463 (727)
T ss_pred             HHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCcccee
Confidence            99999965  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeEEEEEeeccCCccceEEEeCCCCccc-ccccccc-CCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHH
Q 003425          432 YFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG-EVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (821)
Q Consensus       432 y~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG-e~~~~~~-~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~  509 (821)
                      |||++|.+++...+ +|.+.....+++||+|| |+..... .|++.||+|.+.|++++|++++|..+++.+|.++..+++
T Consensus       464 yFI~rG~le~~~~~-~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~  542 (727)
T KOG0498|consen  464 YFIVRGSLESITTD-GGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQ  542 (727)
T ss_pred             EEEEeeeEEEEEcc-CCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHH
Confidence            99999999988744 45667889999999999 8887777 889999999999999999999999999999999999999


Q ss_pred             H---HhcCCcchhhhhhhcccccccccchhhhHhhh--HHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          510 N---LLQGKESDLRLKQLQSDITFHISKHEAELALK--VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       510 ~---~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      +   .+..+...-.....+..-.-+...+ .....+  ...++..|+..-.+..+..+..++..+.+|.+++|.++..|.
T Consensus       543 ~~~r~~s~~~r~~aa~~iq~a~r~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  621 (727)
T KOG0498|consen  543 HTFRYYSHLWRTWAACFIQAAWRRHIKRK-GEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRGS  621 (727)
T ss_pred             hHHHHhhhhhhhhhhhhHHHHHHHHHHhh-ccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccCc
Confidence            5   3333222111111111000000000 000011  112233333334455666777778888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCCCCCCC
Q 003425          585 EEIMTFLIQKGVDINLKDNFG  605 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~~~~g  605 (821)
                      ..+...+++++++++..+..+
T Consensus       622 ~~~~~~~~~~~~~p~f~~~~~  642 (727)
T KOG0498|consen  622 SDCALLLLQKPADPDFSDAEG  642 (727)
T ss_pred             cccccccCCCCCCCCcccccc
Confidence            888888888888888777655

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-64  Score=506.10  Aligned_cols=417  Identities=23%  Similarity=0.432  Sum_probs=366.4

Q ss_pred             HHHHHHHhhhcceeeeeecCC---CcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHH
Q 003425           81 LIWAVYSSIFTPVEFGFFRGL---SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDL  156 (821)
Q Consensus        81 ~~~~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDl  156 (821)
                      .+.++|+.++++.+.+|.+-.   ...|..+|+++|++|++|++++++|+|+++|  .+|.+-.+..+||+.+ .|.+|+
T Consensus         4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD~   81 (536)
T KOG0500|consen    4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLDV   81 (536)
T ss_pred             EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhhh
Confidence            456788888888877886532   3458899999999999999999999999999  5999999999999988 789999


Q ss_pred             HhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 003425          157 FSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP  236 (821)
Q Consensus       157 is~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~  236 (821)
                      +|++|+++++...+.....|   ++|++|+.|+..++.+.+........+ ++.+++.++++++||.||+||+++.....
T Consensus        82 l~liP~D~l~~~~~~~~~~r---~nRllk~yRl~~F~~rTetrT~~Pn~f-ri~~lv~~~~ilfHWNaClYf~iS~~~g~  157 (536)
T KOG0500|consen   82 LSLIPLDLLLFKDGSASLER---LNRLLKIYRLFEFFDRTETRTTYPNAF-RISKLVHYCLILFHWNACLYFLISKAIGF  157 (536)
T ss_pred             hhhcchhHHhhcCCcchHHH---HHHHHHHHHHHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHhhHHHHhhhHhcCc
Confidence            99999999987776655544   667777777778887777666554444 89999999999999999999999976555


Q ss_pred             CCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          237 EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (821)
Q Consensus       237 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~  316 (821)
                      ..+  +|.... ..+..++.+...++..+|+.|+||+..||||+| --..|.+..|++|.++-.++|+++||.++|++++
T Consensus       158 ~~d--~wvY~~-i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGs  233 (536)
T KOG0500|consen  158 TTD--DWVYPK-INDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGS  233 (536)
T ss_pred             ccc--ccccCC-ccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhH
Confidence            444  366542 333444555556689999999999999999999 5788999999999999999999999999999999


Q ss_pred             HHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--ccHHHHHhhCcHHHHHHHHHhhhhhhccccc
Q 003425          317 LIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDIPISIRAKISQTLYLPYIEKVP  393 (821)
Q Consensus       317 ~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~--~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~  393 (821)
                      ++++ +....+||.+|+.+++||+.+++|..+|.||.+|+.|.|.++  .+|+++++.||+.|+.+|+.+++.+.|++++
T Consensus       234 mVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~  313 (536)
T KOG0500|consen  234 MVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR  313 (536)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence            9999 667789999999999999999999999999999999999654  6899999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccc----
Q 003425          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC----  469 (821)
Q Consensus       394 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~----  469 (821)
                      +|+++.+.++.+|+..++++.|.|||+|+++||.+.+||+|.+|.+++..  ++|. .+...+++|++|||++++.    
T Consensus       314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dDg~-t~~~~L~~G~~FGEisIlni~g~  390 (536)
T KOG0500|consen  314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DDGV-TVFVTLKAGSVFGEISILNIKGN  390 (536)
T ss_pred             HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cCCc-EEEEEecCCceeeeeEEEEEcCc
Confidence            99999999999999999999999999999999999999999999999876  4444 3567799999999999874    


Q ss_pred             --cCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHH
Q 003425          470 --NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTN  510 (821)
Q Consensus       470 --~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~  510 (821)
                        +..|++++++++++.+++++++|+.+.+++||+....++++
T Consensus       391 ~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~k  433 (536)
T KOG0500|consen  391 KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEEK  433 (536)
T ss_pred             ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHHH
Confidence              57889999999999999999999999999999988877744

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.7e-62  Score=494.76  Aligned_cols=443  Identities=22%  Similarity=0.395  Sum_probs=380.1

Q ss_pred             cCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecCC--CcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEE
Q 003425           59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL--SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRL  136 (821)
Q Consensus        59 ~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~  136 (821)
                      ++....++-.++.|+.+||++++++.+|+++++|+.++|....  ...|.++|.++|++|++||+++|+|.|..+|+ ++
T Consensus       203 PKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgG-EV  281 (971)
T KOG0501|consen  203 PKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGG-EV  281 (971)
T ss_pred             CCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCC-ce
Confidence            4566778889999999999999999999999999999997665  34688999999999999999999999999987 99


Q ss_pred             eeccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcCch----hHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHH
Q 003425          137 ICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK----EAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKL  212 (821)
Q Consensus       137 v~~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~~~----~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~  212 (821)
                      |.||+.|..+|+|+||+||++||+|++++..+.+..    ..+..|+..|++|+-|+.|.+.   ..+.+  ....++.+
T Consensus       282 vsdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD---~YlEY--GAA~LvLL  356 (971)
T KOG0501|consen  282 VSDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLD---HYLEY--GAAVLVLL  356 (971)
T ss_pred             ecChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh--hHHHHHHH
Confidence            999999999999999999999999999998765443    3344555556666555555444   33333  34457888


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCCC-----CCceeccccCCC---CCccc------ccccchHHHHHHHHHHHHHHhh
Q 003425          213 IAVELYCSHIAACIFYYLATTLPPEQE-----GYTWIGSLKMGD---YSYAD------FREIGFWKSYITSMYASVVTMT  278 (821)
Q Consensus       213 ~~~~l~~~h~~ac~~~~i~~~~~~~~~-----~~~w~~~~~~~~---~~~~~------~~~~~~~~~Y~~s~yw~~~t~t  278 (821)
                      +..+.+++||+||+||.++.++.....     ..+|+....++.   |+|..      ....+--+.|+.|+||.++.||
T Consensus       357 lC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mt  436 (971)
T KOG0501|consen  357 LCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMT  436 (971)
T ss_pred             HHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhh
Confidence            888999999999999999975433222     236776544322   22221      1223445679999999999999


Q ss_pred             ccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003425          279 TVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL  357 (821)
Q Consensus       279 TvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~  357 (821)
                      |||+|.+.|.|..|++|++++|++|.++||.++|+++.++++ .+.+.+|++.++.+.+||+-+++|+.|.+||.+|.--
T Consensus       437 tvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVS  516 (971)
T KOG0501|consen  437 TVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVS  516 (971)
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 7888999999999999999999999999999999998


Q ss_pred             Hhh--ccccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEE
Q 003425          358 QYE--SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVC  435 (821)
Q Consensus       358 ~~~--~~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~  435 (821)
                      .|.  ++.+-+++|...|+++|.+|+.++.++.++.+|.|+-.++.+++.|+..++..+..|||.|++.||..|.++||+
T Consensus       517 TWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvV  596 (971)
T KOG0501|consen  517 TWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVV  596 (971)
T ss_pred             HhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEE
Confidence            884  579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEeeccCCccceEEEeCCCCccccccccccC--CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425          436 LGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI--PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (821)
Q Consensus       436 ~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~--~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l  512 (821)
                      +|.+++.+     .+.++++++.||.||+.-.-.+.  .+.++++|+++|.+..|.|+.+.++++.|..++..+-+++.
T Consensus       597 sGSLEVIQ-----DDEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~  670 (971)
T KOG0501|consen  597 SGSLEVIQ-----DDEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLT  670 (971)
T ss_pred             ecceEEee-----cCcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhcee
Confidence            99999998     33478999999999987543332  34679999999999999999999999999998888877654

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1e-58  Score=473.88  Aligned_cols=431  Identities=23%  Similarity=0.436  Sum_probs=378.1

Q ss_pred             cccccCCcCeEEcCCC-hhHHHHHHHHHHHHHHHhhhcceeeeeecCCCc---CeehhHHHHHHHHHHhHh-heeeEEEE
Q 003425           55 SGFRHFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK---NLYVLDIVGQIAFLFDIV-LQFCLAYR  129 (821)
Q Consensus        55 ~~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~---~~~~~~~~~~~~f~~Di~-l~f~t~y~  129 (821)
                      ..++.....-.|||++ +++..|-.++.++..+++|++|++.+|..+...   .|.+.|++||+++++|++ ++-+..|.
T Consensus       209 ~~c~~~~~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fv  288 (815)
T KOG0499|consen  209 EYCKRIKLPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFV  288 (815)
T ss_pred             HHHhhcCCCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheee
Confidence            3344444455799999 999999999999999999999999999877653   488999999999999985 46688888


Q ss_pred             eCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHH
Q 003425          130 DSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSR  208 (821)
Q Consensus       130 ~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~  208 (821)
                      ..|  .+|.+.+...+||+++ .|-+|++|++|+++.+...+...++   |+.|.+++-.+..++..++..+. +..+.+
T Consensus       289 rgG--~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~w---R~~R~lK~~sF~e~~~~Le~i~s-~~y~~R  362 (815)
T KOG0499|consen  289 RGG--DIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMW---RANRMLKYTSFFEFNHHLESIMS-KAYIYR  362 (815)
T ss_pred             eCc--eEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHHhc-chhhhh
Confidence            777  5999999999999998 7999999999999999888877765   45555555555555666655444 344558


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccC
Q 003425          209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV  288 (821)
Q Consensus       209 ~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~  288 (821)
                      +++...++++++|+.||+||+.+.....+  .+.|+.+..              ...|+.||||++.|+||+| |...|+
T Consensus       363 V~rT~~YmlyilHinacvYY~~SayqglG--~~rWVydg~--------------Gn~YiRCyyfa~kt~~tiG-~~P~P~  425 (815)
T KOG0499|consen  363 VIRTTGYLLYILHINACVYYWASAYQGLG--TTRWVYDGE--------------GNEYIRCYYFAVKTLITIG-GLPEPQ  425 (815)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHhhcccc--cceeEEcCC--------------CCceeeehhhHHHHHHHhc-CCCCcc
Confidence            99999999999999999999988765443  457875532              2369999999999999999 999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc--ccH
Q 003425          289 NLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTE  365 (821)
Q Consensus       289 t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~--~~~  365 (821)
                      |..|++|..+--+.|+++|+.+||.|-.+++. +.+++.|+..|++.-.||++.++|...|+||+.+|+|.|+++  .||
T Consensus       426 ~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDE  505 (815)
T KOG0499|consen  426 TLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDE  505 (815)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccH
Confidence            99999999999999999999999999999998 777889999999999999999999999999999999999764  899


Q ss_pred             HHHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeec
Q 003425          366 ASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE  445 (821)
Q Consensus       366 ~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~  445 (821)
                      .++++.||..||.+++..++..++.++.+|++++.+.+.+++.+++.+.|.|||+|+++||.+.+||+|..|.|++.. .
T Consensus       506 s~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-G  584 (815)
T KOG0499|consen  506 SDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-G  584 (815)
T ss_pred             HHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999986 3


Q ss_pred             cCCccceEEEeCCCCccccccccc---cCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHH
Q 003425          446 ENGTEDYVSYLHPNSSFGEVSILC---NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTN  510 (821)
Q Consensus       446 ~~g~~~~i~~l~~G~~fGe~~~~~---~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~  510 (821)
                      ++| +.++..|++|+.|||++++.   +..|+++++|.++|.++.++++++.+++..||+-.+.+.+.
T Consensus       585 p~~-~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iLrkk  651 (815)
T KOG0499|consen  585 PDG-TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRILRKK  651 (815)
T ss_pred             CCC-CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHHHHH
Confidence            333 45788899999999999884   67889999999999999999999999999999865554443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-36  Score=265.56  Aligned_cols=177  Identities=32%  Similarity=0.390  Sum_probs=150.4

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLE  611 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~  611 (821)
                      ..|.+|.||||+||..|+.+++++|+ +.+..+|.+|..||||||.||..|+.++|+.|+.+ |+|+|..++.|.||||+
T Consensus        33 r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy  112 (226)
T KOG4412|consen   33 RDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY  112 (226)
T ss_pred             cccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence            44558888888888888888888888 45777888888888888888888888888888888 88888888888888888


Q ss_pred             HHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425          612 AIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      |+..|+.+++++|+++|+.++.++  |.||||.|+.-|+.+++++|+..|+.+|.+|..|+||||.|...|+.+...+|+
T Consensus       113 AagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  113 AAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             hhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHH
Confidence            888888888888888888887765  778888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCCCCCCCCCCCCHHHHHHH
Q 003425          690 EAGASVFPKDRWGNTPLDEGRM  711 (821)
Q Consensus       690 ~~ga~~~~~d~~g~t~l~~A~~  711 (821)
                      ++|||++..|+.| ||+..|+-
T Consensus       193 ~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  193 RAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HhccceeeccccC-chHHHHHH
Confidence            8888888888877 88776654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-36  Score=261.93  Aligned_cols=197  Identities=31%  Similarity=0.405  Sum_probs=184.4

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCC-CCCCCCC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHc
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDY-DGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~-~~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~A~~~  615 (821)
                      +.++.+.+|...-...++.+++... .+|.++. +|+||||+||+.|+.+++.+|++ .+..+|.+|..|+||||.||..
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~   82 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN   82 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc
Confidence            4567788888888888999998876 5777765 99999999999999999999995 5888999999999999999999


Q ss_pred             CChHHHHHHHhc-CCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          616 GNDGAASLLVKE-GASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       616 ~~~~~v~~Ll~~-~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      |+.++|+.|+.+ |+++|..  .|.|+||+|+..|..+++++|+++|+.++.+|..|.||||.|+..|+.+++++|+..|
T Consensus        83 g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             CcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            999999999998 9999985  4889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCC
Q 003425          693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHG  735 (821)
Q Consensus       693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~  735 (821)
                      +.+|.+|+.|+||||.|...|+.++..+|+++||+....++.|
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC
Confidence            9999999999999999999999999999999999999998876

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.1e-34  Score=290.61  Aligned_cols=198  Identities=22%  Similarity=0.164  Sum_probs=183.3

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      ..|.+|.||||+|+..|+.++++.|++.|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            467889999999999999999999999999998764  789999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCccc--c-cchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHH
Q 003425          614 KYGNDGAASLLVKEGASLNVEE--A-GSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~--~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      ..|+.+++++|+++|++++..+  | .||||.|+..|+.+++++|+++|.+.  .| ..|.||||+|+..|+.+++++|+
T Consensus       103 ~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL  180 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLL  180 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999987654  4 48999999999999999999987654  23 35899999999999999999999


Q ss_pred             HcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhccccccccCCCC
Q 003425          690 EAGASVFPKDRWGNTP-LDEGRMCGNKNLIKLLEDAKSTQLLEFPHG  735 (821)
Q Consensus       690 ~~ga~~~~~d~~g~t~-l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~  735 (821)
                      ++||+++.+|..|.|| ||+|+..|+.+++++|+++|++++.++..+
T Consensus       181 ~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        181 DYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             HCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            9999999999999987 999999999999999999999998877643

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.4e-32  Score=274.33  Aligned_cols=216  Identities=17%  Similarity=0.179  Sum_probs=189.8

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR  582 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~  582 (821)
                      .+...+..+......+.....++.+.+.+.  .  ++.||||.|+..|+.++++.|++.|++++.+|..|+||||+|+..
T Consensus        29 ~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~  104 (284)
T PHA02791         29 HGHSALYYAIADNNVRLVCTLLNAGALKNL--L--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS  104 (284)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCcCCCcC--C--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence            355667777776666655555655544332  2  357999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCChHHHHHHHhcCCCCCc-ccccchhhHHHhcCCHHHHHHHHHCCC
Q 003425          583 GYEEIMTFLIQKGVDINLKDNFGN-TPLLEAIKYGNDGAASLLVKEGASLNV-EEAGSFLCTAVARGDSDLLKRVLSNGI  660 (821)
Q Consensus       583 g~~~~v~~Ll~~g~~~~~~~~~g~-tpL~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~t~l~~A~~~~~~~~v~~Ll~~g~  660 (821)
                      |+.+++++|+++|++++.++..|. ||||+|+..|+.+++++|++++++... ..|.||||.|+..|+.+++++|+++|+
T Consensus       105 g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gA  184 (284)
T PHA02791        105 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT  184 (284)
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999998885 899999999999999999999865433 358999999999999999999999999


Q ss_pred             CCCCCCCCCCcH-HHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          661 DPNTRDYDLRTP-LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       661 ~~~~~d~~g~T~-Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      ++|.+|..|.|| ||+|+..|+.+++++|+++|++++.+|..| |||      ++.|++++|+++.++-.
T Consensus       185 d~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~  247 (284)
T PHA02791        185 STNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYK  247 (284)
T ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhc
Confidence            999999999987 999999999999999999999999999854 666      89999999999987753

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=4.5e-32  Score=285.42  Aligned_cols=208  Identities=30%  Similarity=0.384  Sum_probs=194.0

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEAI  613 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~A~  613 (821)
                      +......++.|++.|+++.|+.|++. |.++|..|.+|.|+||+||.+++.+++++|+++|+++|..+ .-+.||||+|+
T Consensus        41 ~d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAa  120 (600)
T KOG0509|consen   41 EDSSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAA  120 (600)
T ss_pred             cchhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHH
Confidence            33445678999999999999999999 99999999999999999999999999999999999999998 67889999999


Q ss_pred             HcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          614 KYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ++|+..+|.+|+++|||++..|  |.+|+|.|+..|+.-++-+|+.+|+|+|.+|.+|+||||+|+.+|+...++.|+..
T Consensus       121 r~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f  200 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKF  200 (600)
T ss_pred             HcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHh
Confidence            9999999999999999999876  78999999999999999999999999999999999999999999998889999999


Q ss_pred             CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          692 GASVFPKD-RWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       692 ga~~~~~d-~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      |++++..| ..|+||||+|+..||..++.+|++.|++....+.+|.++.+-..
T Consensus       201 ~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  201 GASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             cccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHH
Confidence            99999988 89999999999999999999889999999998888888766443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.2e-31  Score=299.02  Aligned_cols=206  Identities=27%  Similarity=0.326  Sum_probs=188.5

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH------------------------------
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE------------------------------  585 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~------------------------------  585 (821)
                      ...+.||||.||..|+.++|+.|++.|+++|.+|..|.||||+||..|+.                              
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            34567899999999999999999999999999999999999999876543                              


Q ss_pred             ----------------------------------HHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCChHHHHHHHhcCCC
Q 003425          586 ----------------------------------EIMTFLIQKGVDINLKDNF-GNTPLLEAIKYGNDGAASLLVKEGAS  630 (821)
Q Consensus       586 ----------------------------------~~v~~Ll~~g~~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~  630 (821)
                                                        +++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad  193 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN  193 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC
Confidence                                              2677788889999999988 99999999999999999999999999


Q ss_pred             CCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCCCCCC-CCCCHH
Q 003425          631 LNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE-GLYLMAKLLVEAGASVFPKDR-WGNTPL  706 (821)
Q Consensus       631 ~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~-~g~t~l  706 (821)
                      ++..  .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.|||
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL  273 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTAL  273 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHH
Confidence            9875  488999999999999999999999999999999999999999976 789999999999999999986 799999


Q ss_pred             HHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          707 DEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       707 ~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      |+|  .++.+++++|+++|++++..+..|.+|...+.
T Consensus       274 h~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        274 HSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             HHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999  57889999999999999999999999987553

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=4e-31  Score=292.35  Aligned_cols=224  Identities=21%  Similarity=0.157  Sum_probs=200.6

Q ss_pred             HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE  585 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~  585 (821)
                      .-+..+...+..+.....++++.+  .+..+..|.||||.|+..|+.++++.|++.|++++..+.++.||||.|+..|+.
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            345566666676666667766554  445566799999999999999999999999999999989999999999999999


Q ss_pred             HHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCC
Q 003425          586 EIMTFLIQKGVDIN-LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDP  662 (821)
Q Consensus       586 ~~v~~Ll~~g~~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  662 (821)
                      +++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..  +|.||||.|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            99999999998764 45678999999999999999999999999999875  4889999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425          663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN-TPLDEGRMCGNKNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t~l~~A~~~~~~~i~~~Ll~~~a~~~~~  731 (821)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++|++++..
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            99999999999999999999999999999999999998874 8899999999999999999999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.6e-31  Score=290.41  Aligned_cols=234  Identities=24%  Similarity=0.255  Sum_probs=149.9

Q ss_pred             HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCC----------------------
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA----------------------  563 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~----------------------  563 (821)
                      ..+..+...+..+.....++.+.+  ++..+..|.||||.|+..|+.+++++|++.|+                      
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~--~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g  114 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGAD--INHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCG  114 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCc
Confidence            444555555554444444444433  23344455666666666666666666665443                      


Q ss_pred             -CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchh
Q 003425          564 -DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFL  640 (821)
Q Consensus       564 -~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l  640 (821)
                       +++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..  .|.|||
T Consensus       115 ~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL  194 (434)
T PHA02874        115 IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL  194 (434)
T ss_pred             CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence             33445556666666666666666666666666666666666666666666666666666666666655443  355666


Q ss_pred             hHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHH
Q 003425          641 CTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG-NKNLIK  719 (821)
Q Consensus       641 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-~~~i~~  719 (821)
                      |.|+..|+.+++++|+++|++++.++..|.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+ +.++++
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~  272 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIID  272 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHH
Confidence            66666666666666666666666666666666666665543 3444444 46777788888999999999875 789999


Q ss_pred             HHHhccccccccCCCCCCcccccc
Q 003425          720 LLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       720 ~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      +|+++|++.+..+..|.++...+.
T Consensus       273 ~Ll~~gad~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        273 ILLYHKADISIKDNKGENPIDTAF  296 (434)
T ss_pred             HHHHCcCCCCCCCCCCCCHHHHHH
Confidence            999999999999999998876543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.4e-31  Score=289.80  Aligned_cols=199  Identities=25%  Similarity=0.277  Sum_probs=190.4

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      .+++||.|+..|+.++++.|++.|+++|..+.+|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCc---ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 003425          619 GAASLLVKEGASLNV---EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV  695 (821)
Q Consensus       619 ~~v~~Ll~~~~~~~~---~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~  695 (821)
                      ++++.|++.|++.+.   .+|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            999999999986653   46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425          696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ  737 (821)
Q Consensus       696 ~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~  737 (821)
                      +.+|..|.||||+|+..|+.+++++|+++|++++.....|..
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~  203 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV  203 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Confidence            999999999999999999999999999999999988877653

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.1e-31  Score=297.54  Aligned_cols=218  Identities=27%  Similarity=0.331  Sum_probs=184.8

Q ss_pred             HhcCCcchhhhhhhcccccccccchhhhHhhhHHHHh--hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHH
Q 003425          511 LLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAA--YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEE  586 (821)
Q Consensus       511 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~--~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--~~~  586 (821)
                      +......+.....++.+.+.  +..+..|.||||.|+  ..|+.++++.|++.|++++..+..|.||||+|+..|  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANV--NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCC--CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH
Confidence            33444444444445544443  566778889999999  899999999999999999988889999999999998  899


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--c------cchhhHHHhcCC--HHHHHHHH
Q 003425          587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--A------GSFLCTAVARGD--SDLLKRVL  656 (821)
Q Consensus       587 ~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~------~t~l~~A~~~~~--~~~v~~Ll  656 (821)
                      ++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+  +      .||+|.|+..|+  .+++++|+
T Consensus       158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll  237 (480)
T PHA03100        158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLL  237 (480)
T ss_pred             HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHH
Confidence            9999999999999888889999999999999999999999998887653  4      788999999998  89999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425          657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       657 ~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~  730 (821)
                      ++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+..++.+++++|+++|++...
T Consensus       238 ~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        238 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.8e-31  Score=297.15  Aligned_cols=239  Identities=23%  Similarity=0.269  Sum_probs=219.9

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHH-----HhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS-----AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLH  577 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~-----A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~  577 (821)
                      .....+..+...+..+.....++++.+  ++..+..+.||||.     |+..|+.++++.|++.|++++..|..|.||||
T Consensus        34 ~~~t~L~~A~~~~~~~ivk~Ll~~g~~--~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         34 KPVLPLYLAKEARNIDVVKILLDNGAD--INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLL  111 (480)
T ss_pred             ccchhhhhhhccCCHHHHHHHHHcCCC--CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhh
Confidence            344566777777777777777766654  44566778999999     99999999999999999999999999999999


Q ss_pred             HHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHH
Q 003425          578 LAA--SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDL  651 (821)
Q Consensus       578 ~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~  651 (821)
                      +|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++..  .|.||||.|+..|+.++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            999  999999999999999999999999999999999999  999999999999998765  48899999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCC------CcHHHHHHHcCc--HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425          652 LKRVLSNGIDPNTRDYDL------RTPLHVAASEGL--YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED  723 (821)
Q Consensus       652 v~~Ll~~g~~~~~~d~~g------~T~Lh~A~~~g~--~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~  723 (821)
                      +++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       192 v~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~  271 (480)
T PHA03100        192 IKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLD  271 (480)
T ss_pred             HHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999      999999999999  999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCcccccc
Q 003425          724 AKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       724 ~~a~~~~~~~~~~~~~~~~~  743 (821)
                      +|++++..+..|.++...+.
T Consensus       272 ~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        272 LGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             cCCCCCccCCCCCcHHHHHH
Confidence            99999999999999876443

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=2e-30  Score=284.66  Aligned_cols=206  Identities=21%  Similarity=0.269  Sum_probs=179.8

Q ss_pred             hhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCC
Q 003425          519 LRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGV  596 (821)
Q Consensus       519 ~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~  596 (821)
                      .....+.++.  +++..+.+|.||||+||..|+.++++.|+++|+++|.+|.+|.||||+|+..+  ..+++++|+++|+
T Consensus        54 iv~~Ll~~Ga--dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Ga  131 (446)
T PHA02946         54 FVEELLHRGY--SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA  131 (446)
T ss_pred             HHHHHHHCcC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC
Confidence            3344444443  45677888999999999999999999999999999999999999999998866  4789999999999


Q ss_pred             CCCC-CCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCC--HHHHHHHHHCCCCCCCCCCCCCc
Q 003425          597 DINL-KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGD--SDLLKRVLSNGIDPNTRDYDLRT  671 (821)
Q Consensus       597 ~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~--~~~v~~Ll~~g~~~~~~d~~g~T  671 (821)
                      +++. .|..|.|||| |+..++.+++++|++.|++++..  .|.||||.|+..++  .+++++|+++|++++.+|.+|+|
T Consensus       132 din~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~T  210 (446)
T PHA02946        132 KINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNT  210 (446)
T ss_pred             CcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCC
Confidence            9995 6889999997 66779999999999999988765  48899999887654  68999999999999999999999


Q ss_pred             HHHHHHHcC--cHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhccccc
Q 003425          672 PLHVAASEG--LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN-KNLIKLLEDAKSTQ  728 (821)
Q Consensus       672 ~Lh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-~~i~~~Ll~~~a~~  728 (821)
                      |||+|+..|  +.+++++|++ |+++|.+|..|.||||+|+..++ .+++++|+++|+..
T Consensus       211 pLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        211 PLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             HHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCC
Confidence            999999876  7899999985 89999999999999999999988 58999999998754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=291.13  Aligned_cols=237  Identities=25%  Similarity=0.310  Sum_probs=200.4

Q ss_pred             hHHHHHHHhcCC---cchhhhhhhcccccccccchhhhHhhhHHHHhhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425          504 GRKVLTNLLQGK---ESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG-DLYQLEGLIRAGADPNRTDYDGRSPLHLA  579 (821)
Q Consensus       504 ~~~~l~~~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g-~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A  579 (821)
                      +...++.++...   ..+.....++.+.+  ++..+..|.||||.|+..| +.++++.|++.|+++|.+|..|.||||+|
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad--in~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a  124 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVY  124 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            344555555544   33344445555444  4455668999999999999 59999999999999999999999999999


Q ss_pred             H--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChHHHHHHHhcCCCCCcc--cccchhhHHHhc--CCHHH
Q 003425          580 A--SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVE--EAGSFLCTAVAR--GDSDL  651 (821)
Q Consensus       580 ~--~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~--~~~~~  651 (821)
                      +  ..++.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|+++|++++..  .|.||||.|+..  ++.++
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i  204 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARI  204 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHH
Confidence            9  556789999999999999999999999999988866  578899999999888765  478999998875  77899


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH--HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          652 LKRVLSNGIDPNTRDYDLRTPLHVAASEGLY--LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       652 v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~--~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      ++.|+++|++++.+|..|+||||+|+..|+.  .+++.|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       205 ~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n  284 (471)
T PHA03095        205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN  284 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999874  68899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCccccc
Q 003425          730 LEFPHGFQDTADK  742 (821)
Q Consensus       730 ~~~~~~~~~~~~~  742 (821)
                      ..+..|.+|...+
T Consensus       285 ~~~~~g~tpl~~A  297 (471)
T PHA03095        285 AVSSDGNTPLSLM  297 (471)
T ss_pred             ccCCCCCCHHHHH
Confidence            9999999987644

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.9e-31  Score=277.63  Aligned_cols=201  Identities=29%  Similarity=0.352  Sum_probs=182.5

Q ss_pred             HhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHH
Q 003425          511 LLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMT  589 (821)
Q Consensus       511 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~~~v~  589 (821)
                      +.+.++.+...+..++. ...++..|.+|.++||+||.+++++++++|+++|+|+|..+ .-+.||||+||++|+..+|+
T Consensus        51 A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~  129 (600)
T KOG0509|consen   51 ATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVD  129 (600)
T ss_pred             HhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHH
Confidence            33444444444555554 44567778899999999999999999999999999999998 67899999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-
Q 003425          590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-  666 (821)
Q Consensus       590 ~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-  666 (821)
                      +|+++||||+.+|.+|.+|||.|+..|+...+.+|+.+|++++.+|  |+||||+|+.+|+...+..|++-|++++..| 
T Consensus       130 lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~  209 (600)
T KOG0509|consen  130 LLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDD  209 (600)
T ss_pred             HHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999999999999999988764  8999999999999998999999999999888 


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 003425          667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC  712 (821)
Q Consensus       667 ~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  712 (821)
                      ..|+||||+|+..|+..++.+|++.|++.+..|.+|.||+++|...
T Consensus       210 ~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  210 NHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            8999999999999999999988888899999999999999999887

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=6.8e-30  Score=280.54  Aligned_cols=202  Identities=25%  Similarity=0.236  Sum_probs=184.8

Q ss_pred             HhhhHHHHh--hcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          539 LALKVNSAA--YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG  616 (821)
Q Consensus       539 ~~~~L~~A~--~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~  616 (821)
                      +.++||.++  ..++.++++.|+++|+++|.+|.+|.||||+||..|+.+++++|+++|+++|.+|..|.||||+|+..+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            368888776  456789999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C--hHHHHHHHhcCCCCCc---ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--cHHHHHHHH
Q 003425          617 N--DGAASLLVKEGASLNV---EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG--LYLMAKLLV  689 (821)
Q Consensus       617 ~--~~~v~~Ll~~~~~~~~---~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g--~~~~v~~Ll  689 (821)
                      +  .+++++|+++|++++.   .+|.|||| |+..++.+++++|+++|++++.+|..|+||||.|+..+  +.+++++|+
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll  195 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM  195 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHH
Confidence            4  7899999999999984   45889997 67789999999999999999999999999999998765  468999999


Q ss_pred             HcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhccccccccCCCCCCccccc
Q 003425          690 EAGASVFPKDRWGNTPLDEGRMCG--NKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       690 ~~ga~~~~~d~~g~t~l~~A~~~~--~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ++|++++.+|.+|+||||+|+..|  +.+++++|++ |++.+.++..|.+|.+..
T Consensus       196 ~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A  249 (446)
T PHA02946        196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999986  8899999995 899999999999998743

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=8.5e-30  Score=286.57  Aligned_cols=212  Identities=24%  Similarity=0.237  Sum_probs=185.2

Q ss_pred             chhhhhhhcccccccccchhhhHhhhHHHHhhc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---CHHHH
Q 003425          517 SDLRLKQLQSDITFHISKHEAELALKVNSAAYH-----GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG---YEEIM  588 (821)
Q Consensus       517 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~-----g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g---~~~~v  588 (821)
                      .+.....++++.  +++..+..|.||||.|+.+     +..++++.|+++|+|+|.+|.+|.||||+|+.++   +.+++
T Consensus        51 ~~iv~~Ll~~Ga--dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         51 TDIVKLFINLGA--NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             HHHHHHHHHCCC--CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            344555566655  4556778999999999865     7799999999999999999999999999999976   78999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCC---hHHHHHHHhcCCCCCcc---cccchhhHHHhc----CCHHHHHHHHHC
Q 003425          589 TFLIQKGVDINLKDNFGNTPLLEAIKYGN---DGAASLLVKEGASLNVE---EAGSFLCTAVAR----GDSDLLKRVLSN  658 (821)
Q Consensus       589 ~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~---~~~t~l~~A~~~----~~~~~v~~Ll~~  658 (821)
                      ++|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++..   .+.||+|.++..    ++.+++++|+++
T Consensus       129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~  208 (489)
T PHA02798        129 LFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDN  208 (489)
T ss_pred             HHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHC
Confidence            99999999999999999999999999998   99999999999999865   367999988764    478889988888


Q ss_pred             CCCC---------------------------------------CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 003425          659 GIDP---------------------------------------NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD  699 (821)
Q Consensus       659 g~~~---------------------------------------~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d  699 (821)
                      |+++                                       |.+|..|.||||+|+..|+.+++++|+++|||++.+|
T Consensus       209 Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        209 GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccC
Confidence            7644                                       4566779999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425          700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       700 ~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~  730 (821)
                      ..|+||||+|+..++.++++.|+++++++..
T Consensus       289 ~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        289 ELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            9999999999999999999999999988764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=8.2e-30  Score=286.86  Aligned_cols=225  Identities=18%  Similarity=0.157  Sum_probs=190.1

Q ss_pred             hhhhhhcccccccccchhhhHhhhHHHHhhcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH-----------------
Q 003425          519 LRLKQLQSDITFHISKHEAELALKVNSAAYHGD--LYQLEGLIRAGADPNRTDYDGRSPLHLA-----------------  579 (821)
Q Consensus       519 ~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~--~~~v~~Ll~~g~~~n~~d~~g~t~L~~A-----------------  579 (821)
                      ....+++++  .+++..+..|.||||.|+..|+  .++|+.|+++|+|+|.+|..|.||||+|                 
T Consensus       194 IVklLLe~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie  271 (764)
T PHA02716        194 ILEWLCNNG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIE  271 (764)
T ss_pred             HHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHH
Confidence            333444444  3456678899999999999995  5899999999999999999999999975                 


Q ss_pred             --------------------HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH--cCChHHHHHHHhcCCCCCccc--
Q 003425          580 --------------------ASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK--YGNDGAASLLVKEGASLNVEE--  635 (821)
Q Consensus       580 --------------------~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~--~~~~~~v~~Ll~~~~~~~~~~--  635 (821)
                                          +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|++++..+  
T Consensus       272 ~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~  351 (764)
T PHA02716        272 SLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNI  351 (764)
T ss_pred             hccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCC
Confidence                                44578899999999999999999999999999874  468899999999999998764  


Q ss_pred             ccchhhHHHh--------------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH----HHcCcHHHHHHHHHcCC----
Q 003425          636 AGSFLCTAVA--------------RGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA----ASEGLYLMAKLLVEAGA----  693 (821)
Q Consensus       636 ~~t~l~~A~~--------------~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A----~~~g~~~~v~~Ll~~ga----  693 (821)
                      |.||||.|+.              .++.+++++|+++|++++.+|..|.||||.|    ...++.+++++|++.|+    
T Consensus       352 G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~  431 (764)
T PHA02716        352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMV  431 (764)
T ss_pred             CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhh
Confidence            8899999875              3688999999999999999999999999942    23467888888887643    


Q ss_pred             ---------------------------------------------------------CCCCCCCCCCCHHHHHHHcCCHH
Q 003425          694 ---------------------------------------------------------SVFPKDRWGNTPLDEGRMCGNKN  716 (821)
Q Consensus       694 ---------------------------------------------------------~~~~~d~~g~t~l~~A~~~~~~~  716 (821)
                                                                               ++|..|..|+||||+|+..|+.+
T Consensus       432 ~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~  511 (764)
T PHA02716        432 KHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNA  511 (764)
T ss_pred             hhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCcc
Confidence                                                                     23455778999999999999874


Q ss_pred             -----HHHHHHhccccccccCCCCCCccccccCC
Q 003425          717 -----LIKLLEDAKSTQLLEFPHGFQDTADKRNP  745 (821)
Q Consensus       717 -----i~~~Ll~~~a~~~~~~~~~~~~~~~~~~~  745 (821)
                           ++++|+++|++.+.++..|.+|.+.+...
T Consensus       512 ~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~  545 (764)
T PHA02716        512 NIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRN  545 (764)
T ss_pred             chhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHc
Confidence                 55999999999999999999998865543

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.97  E-value=4.6e-30  Score=264.04  Aligned_cols=236  Identities=19%  Similarity=0.250  Sum_probs=182.2

Q ss_pred             cccccccccCCcCeEEcCCChh-HHHHHHHHHHHHHHHhhhcceee--ee-----------------ecCCCcCeehhHH
Q 003425           51 QSVLSGFRHFSRNLVFHPDNRW-YRAWTKFILIWAVYSSIFTPVEF--GF-----------------FRGLSKNLYVLDI  110 (821)
Q Consensus        51 ~~~~~~~~~~~~~~~~~P~s~~-~~~w~~~~~~~~~~~~~~~p~~~--~f-----------------~~~~~~~~~~~~~  110 (821)
                      ...++++|+++|.++.+|+|+. .++...+-+++++.+.+..-+..  .|                 .......+.++|.
T Consensus       168 ~~~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~  247 (477)
T KOG3713|consen  168 GGRCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVET  247 (477)
T ss_pred             CCChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHH
Confidence            3455668999999999999654 56666655555555544333321  11                 1112345789999


Q ss_pred             HHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhhh-HHHHHhhhhHHHHHhhc--C---------chhHHHHH
Q 003425          111 VGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--G---------RKEAVRYL  178 (821)
Q Consensus       111 ~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~f-~iDlis~lP~~~~~~~~--~---------~~~~~~~l  178 (821)
                      +|.+||++|+++||            +..|++  .+|+|+.. +||++|++||++-....  .         ...+++++
T Consensus       248 vCi~WFT~E~llR~------------~~~P~k--~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvl  313 (477)
T KOG3713|consen  248 VCIAWFTFEYLLRF------------LVAPNK--LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVL  313 (477)
T ss_pred             HHHHHHHHHHHHHH------------HcCchH--HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHH
Confidence            99999999999955            677888  99999975 99999999998764322  1         11457888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccc
Q 003425          179 LWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADF  257 (821)
Q Consensus       179 ~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~  257 (821)
                      |++|++|++|+.|+...++.... ++.....+..+++++.+.+-+||.+.|+++...+...                   
T Consensus       314 R~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~-------------------  374 (477)
T KOG3713|consen  314 RVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTK-------------------  374 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-------------------
Confidence            88888888888888888876554 4556667788888888888999999999886543322                   


Q ss_pred             cccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Q 003425          258 REIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT  324 (821)
Q Consensus       258 ~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~  324 (821)
                           |.+.+.|+||+++|||||||||++|.|+.|++++..+++.|+++.|++|..|.+.++...+.
T Consensus       375 -----FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~  436 (477)
T KOG3713|consen  375 -----FTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE  436 (477)
T ss_pred             -----CccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence                 45788999999999999999999999999999999999999999999999999988774433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.3e-29  Score=279.14  Aligned_cols=215  Identities=24%  Similarity=0.303  Sum_probs=189.2

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHH---------------------------------
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY---------------------------------  553 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~---------------------------------  553 (821)
                      .++.+...+..+.....++.+.  +++..+..|.||||.||..|+.+                                 
T Consensus        40 PLh~A~~~g~~e~vk~Ll~~ga--dvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~  117 (477)
T PHA02878         40 PLHQAVEARNLDVVKSLLTRGH--NVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIF  117 (477)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHH
Confidence            4677777777776666776654  45567788999999999876542                                 


Q ss_pred             -------------------------------HHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 003425          554 -------------------------------QLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLK  601 (821)
Q Consensus       554 -------------------------------~v~~Ll~~g~~~n~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  601 (821)
                                                     +++.|++.|+++|..+.. |.||||+||..|+.+++++|+++|++++.+
T Consensus       118 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~  197 (477)
T PHA02878        118 KIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP  197 (477)
T ss_pred             HHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCc
Confidence                                           667777889999999988 999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhc-CCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHH
Q 003425          602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVAR-GDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAA  677 (821)
Q Consensus       602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~-~~~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~  677 (821)
                      |..|.||||.|+..|+.+++++|++.|++++..+  |.||||+|+.. ++.+++++|+++|+++|.++. .|.||||+| 
T Consensus       198 d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A-  276 (477)
T PHA02878        198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS-  276 (477)
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH-
Confidence            9999999999999999999999999999998764  89999999976 789999999999999999886 799999999 


Q ss_pred             HcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhcc
Q 003425          678 SEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG-NKNLIKLLEDAK  725 (821)
Q Consensus       678 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-~~~i~~~Ll~~~  725 (821)
                       .++.+++++|+++|||+|..|..|.||||+|+..+ ..+++++|+.+.
T Consensus       277 -~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        277 -IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             -ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence             57889999999999999999999999999999864 567888887664

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=3.9e-29  Score=281.46  Aligned_cols=209  Identities=20%  Similarity=0.135  Sum_probs=182.8

Q ss_pred             ccch-hhhHhhhHHHHhh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCC
Q 003425          532 ISKH-EAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--EEIMTFLIQKGVDINLKDNFGN  606 (821)
Q Consensus       532 ~~~~-~~~~~~~L~~A~~--~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~  606 (821)
                      ++.. +..|.||||.|+.  .++.+++++|+++|+++|.+|..|.||||+|+..|+  .+++++|+++|+|+|.+|..|.
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~  248 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGM  248 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            4444 6789999999865  468999999999999999999999999999999995  5899999999999999999999


Q ss_pred             cHHHHHH---HcCChHHHHHHHhcCCCCCcccccchhh---HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--
Q 003425          607 TPLLEAI---KYGNDGAASLLVKEGASLNVEEAGSFLC---TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS--  678 (821)
Q Consensus       607 tpL~~A~---~~~~~~~v~~Ll~~~~~~~~~~~~t~l~---~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~--  678 (821)
                      ||||+|+   ..++.++++.|++.+......+...+++   .|+..|+.++++.|+++|++++.+|..|+||||+|+.  
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~  328 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRH  328 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHh
Confidence            9999885   5678999999998754332222233343   4789999999999999999999999999999999875  


Q ss_pred             cCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          679 EGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM--------------CGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       679 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~--------------~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|+++|+++...+..|.+|.+
T Consensus       329 ~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        329 NISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            468899999999999999999999999999875              37899999999999999999999999986

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=278.71  Aligned_cols=224  Identities=23%  Similarity=0.213  Sum_probs=202.1

Q ss_pred             hhhhhhhcccccccccchhhhHhhhHHHHhhcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHH
Q 003425          518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQ  593 (821)
Q Consensus       518 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g-~~~~v~~Ll~  593 (821)
                      +.....++++.+  ++..+..|.||||.|+..|   +.++++.|++.|+|+|.++..|.||||+|+..| +.+++++|++
T Consensus        28 ~~v~~Ll~~ga~--vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~  105 (471)
T PHA03095         28 EEVRRLLAAGAD--VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK  105 (471)
T ss_pred             HHHHHHHHcCCC--cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHH
Confidence            344444544443  4567778999999999999   999999999999999999999999999999999 5999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHH--HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcC--CHHHHHHHHHCCCCCCCCCC
Q 003425          594 KGVDINLKDNFGNTPLLEAI--KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARG--DSDLLKRVLSNGIDPNTRDY  667 (821)
Q Consensus       594 ~g~~~~~~~~~g~tpL~~A~--~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~~~~d~  667 (821)
                      +|++++.+|..|.||||+|+  ..++.+++++|+++|++++..  .|.||||.|+..+  +.+++++|+++|++++..|.
T Consensus       106 ~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~  185 (471)
T PHA03095        106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDD  185 (471)
T ss_pred             cCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCC
Confidence            99999999999999999999  556889999999999999875  4899999998876  67999999999999999999


Q ss_pred             CCCcHHHHHHHc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhccccccccCCCCCCcccccc
Q 003425          668 DLRTPLHVAASE--GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK--NLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       668 ~g~T~Lh~A~~~--g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~--~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      .|.||||+|+..  ++.++++.|+++|++++.+|..|+||||+|+..|+.  .+++.|++.|++.+..+..|.+|.+.+.
T Consensus       186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~  265 (471)
T PHA03095        186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA  265 (471)
T ss_pred             CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            999999999975  788999999999999999999999999999999975  6889999999999999999999987543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=272.70  Aligned_cols=235  Identities=28%  Similarity=0.298  Sum_probs=206.2

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~  586 (821)
                      .+..+...++.+.....+..+. ..++..+..|.||||.|+..|+.++|++|++.|+++|..+..|.||||.|+..|+.+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~-~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~   82 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKG-NCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHD   82 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            3455556666655555554332 234455677899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCC-----------------------CCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhh
Q 003425          587 IMTFLIQKGV-----------------------DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLC  641 (821)
Q Consensus       587 ~v~~Ll~~g~-----------------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~  641 (821)
                      ++++|+++|+                       +++.++..|.||||+|+..|+.+++++|+++|++++..  +|.||||
T Consensus        83 iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh  162 (434)
T PHA02874         83 IIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH  162 (434)
T ss_pred             HHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            9999998765                       46678889999999999999999999999999998875  4889999


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          642 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      .|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++ +++++|
T Consensus       163 ~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~L  241 (434)
T PHA02874        163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELL  241 (434)
T ss_pred             HHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876 566666


Q ss_pred             HhccccccccCCCCCCccccccC
Q 003425          722 EDAKSTQLLEFPHGFQDTADKRN  744 (821)
Q Consensus       722 l~~~a~~~~~~~~~~~~~~~~~~  744 (821)
                      + .|++.+..+..|.+|.+.+..
T Consensus       242 l-~~~~in~~d~~G~TpLh~A~~  263 (434)
T PHA02874        242 I-NNASINDQDIDGSTPLHHAIN  263 (434)
T ss_pred             H-cCCCCCCcCCCCCCHHHHHHh
Confidence            6 688999999999999886543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=5.2e-29  Score=266.60  Aligned_cols=234  Identities=25%  Similarity=0.272  Sum_probs=202.3

Q ss_pred             HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHH-----cCCCCCCCCCCCCcHHHHHH
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIR-----AGADPNRTDYDGRSPLHLAA  580 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~-----~g~~~n~~d~~g~t~L~~A~  580 (821)
                      ..++.++.....+.+....+  ...+..+.+.+|.+|+|.|++.|..++++..+.     ++..+|..+..|.||||.|+
T Consensus       156 TpLh~A~~~~~~E~~k~Li~--~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv  233 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELIN--KGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV  233 (929)
T ss_pred             chhhHHHhcChHHHHHHHHh--cCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence            34555665555443344443  334566788889999999999999999999997     66788999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCC---------------CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHH
Q 003425          581 SRGYEEIMTFLIQKGVD---------------INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTA  643 (821)
Q Consensus       581 ~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A  643 (821)
                      ..|+.++++.+|+.|..               +|..|++|.||||+||+.|+.+++..|+..|++++.+  ++.||||.|
T Consensus       234 e~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~A  313 (929)
T KOG0510|consen  234 EGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFA  313 (929)
T ss_pred             hcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHH
Confidence            99999999999998653               4567899999999999999999999999999999876  478999999


Q ss_pred             HhcCCHHHHHHHHH-CC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCHHHH
Q 003425          644 VARGDSDLLKRVLS-NG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF---PKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       644 ~~~~~~~~v~~Ll~-~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~---~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                      |..|+.+.++.||+ .| ...|..|-.|.||||+|++.|+..++++|++.||+..   ..|.+|.||||.|+..|+..+|
T Consensus       314 A~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av  393 (929)
T KOG0510|consen  314 AIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAV  393 (929)
T ss_pred             HHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHH
Confidence            99999999999998 44 4668889999999999999999999999999999987   5699999999999999999999


Q ss_pred             HHHHhccccccccCCCCCCcccc
Q 003425          719 KLLEDAKSTQLLEFPHGFQDTAD  741 (821)
Q Consensus       719 ~~Ll~~~a~~~~~~~~~~~~~~~  741 (821)
                      ++|+.+|++....+..|.+..+.
T Consensus       394 ~~Li~~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  394 QKLISHGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             HHHHHcCCceeeccccccccccc
Confidence            99999999999988888877664

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=289.26  Aligned_cols=213  Identities=24%  Similarity=0.280  Sum_probs=196.2

Q ss_pred             ccccchhhhHhhhHHHHhhcCCH-HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCc
Q 003425          530 FHISKHEAELALKVNSAAYHGDL-YQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNT  607 (821)
Q Consensus       530 ~~~~~~~~~~~~~L~~A~~~g~~-~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t  607 (821)
                      ..++..+..|.||||.|+..|+. ++++.|++.|++++..|..|.||||+|+..| +.++++.|+..|++++..|..|.|
T Consensus       264 ~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~T  343 (682)
T PHA02876        264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYIT  343 (682)
T ss_pred             CCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCc
Confidence            34556677899999999999997 5899999999999999999999999999999 599999999999999999999999


Q ss_pred             HHHHHHHc-CChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCc-HH
Q 003425          608 PLLEAIKY-GNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL-YL  683 (821)
Q Consensus       608 pL~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~-~~  683 (821)
                      |||+|+.. ++.++++.|++.|++++..+  |.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..
T Consensus       344 pLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~  423 (682)
T PHA02876        344 PLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYM  423 (682)
T ss_pred             HHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHH
Confidence            99999985 57889999999999998764  8899999999999999999999999999999999999999998665 56


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CHHHHHHHHhccccccccCCCCCCccccc
Q 003425          684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCG-NKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       684 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ++++|+++|+++|.+|..|+||||+|+..| +.+++++|+++|++++..+..|.++....
T Consensus       424 ~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        424 SVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             HHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            799999999999999999999999999977 68999999999999999999999887643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=256.70  Aligned_cols=185  Identities=17%  Similarity=0.041  Sum_probs=171.5

Q ss_pred             HHhhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          545 SAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAAS--RGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG  616 (821)
Q Consensus       545 ~A~~~g~~~~v~~Ll~~g~~~n------~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~  616 (821)
                      .|+..+..++++.|+.+|+++|      .++..++|+||+|+.  .|+.+++++|+++|||++..  ++.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            8999999999999999999999      788899999999999  89999999999999999985  4589999999999


Q ss_pred             ChHHHHHHHhcCCCCCcc--------cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          617 NDGAASLLVKEGASLNVE--------EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       617 ~~~~v~~Ll~~~~~~~~~--------~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      +.+++++|+++|++....        .+.+++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999854321        256889999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCC--------HHHHHHHHhcccccccc
Q 003425          689 VEAGASVFPKDRWGNTPLDEGRMCGN--------KNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       689 l~~ga~~~~~d~~g~t~l~~A~~~~~--------~~i~~~Ll~~~a~~~~~  731 (821)
                      +++||+++.+|..|+||||+|+..|+        .+++++|+++|++....
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            99999999999999999999999984        69999999999977653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=275.25  Aligned_cols=189  Identities=18%  Similarity=0.262  Sum_probs=119.7

Q ss_pred             HhhhHHHHhhcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcH
Q 003425          539 LALKVNSAAYHG------DLYQLEGLIRAGADPNRTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDI-NLKDNFGNTP  608 (821)
Q Consensus       539 ~~~~L~~A~~~g------~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~tp  608 (821)
                      +.||||.|+.++      +.++++.|+++|+|+|.+|..|.||||.|+..   |+.+++++|+++|+|+ +.+|..|.||
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tp  148 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNL  148 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCH
Confidence            456666665543      34566666666666666666666666665543   4566666666666666 5666666666


Q ss_pred             HHHHHHc--CChHHHHHHHhcCCCCCcc---cccchhhHHHhcC----CHHHHHHHHHCCCCCCC---------------
Q 003425          609 LLEAIKY--GNDGAASLLVKEGASLNVE---EAGSFLCTAVARG----DSDLLKRVLSNGIDPNT---------------  664 (821)
Q Consensus       609 L~~A~~~--~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A~~~~----~~~~v~~Ll~~g~~~~~---------------  664 (821)
                      ||+|+..  ++.+++++|+++|++++..   .|.||||.|+..+    +.+++++|+++|++++.               
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence            6666543  4566666666666666542   3566666665443    56666666666665554               


Q ss_pred             -----------------------CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          665 -----------------------RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       665 -----------------------~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                                             +|..|.||||+|+..|+.+++++|+++|||++.+|..|.||||+|+..|+.++++.|
T Consensus       229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                                   445566666666666666666666666666666666666666666666666666666


Q ss_pred             Hhcccc
Q 003425          722 EDAKST  727 (821)
Q Consensus       722 l~~~a~  727 (821)
                      ++.++.
T Consensus       309 L~~~p~  314 (494)
T PHA02989        309 LQLKPG  314 (494)
T ss_pred             HhcCCC
Confidence            665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.5e-28  Score=240.61  Aligned_cols=175  Identities=16%  Similarity=0.210  Sum_probs=158.6

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGVDINLKD-NFGNTPLLEA  612 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~A  612 (821)
                      .+.+.+|||.|+..|+.+.|+.|++.   +|..|..|.||||+|+..+  +.+++++|+++|+++|.++ ..|.||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            56678999999999999999999975   5677889999999999855  8999999999999999997 4899999998


Q ss_pred             HHc---CChHHHHHHHhcCCCCCccc--ccchhhHHHh--cCCHHHHHHHHHCCCCCCCCCCCCCcHHHH-HHHcCcHHH
Q 003425          613 IKY---GNDGAASLLVKEGASLNVEE--AGSFLCTAVA--RGDSDLLKRVLSNGIDPNTRDYDLRTPLHV-AASEGLYLM  684 (821)
Q Consensus       613 ~~~---~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~--~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~-A~~~g~~~~  684 (821)
                      +..   ++.+++++|+++|++++..+  |.||||.|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            764   47999999999999999764  8899999886  468999999999999999999999999996 566889999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425          685 AKLLVEAGASVFPKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       685 v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  713 (821)
                      +++|+++|++++.+|..|.||+|+|+.++
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999999765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.2e-28  Score=283.83  Aligned_cols=229  Identities=23%  Similarity=0.205  Sum_probs=177.4

Q ss_pred             HhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 003425          511 LLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF  590 (821)
Q Consensus       511 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~  590 (821)
                      .............++.+.+  ++..+..|.||||.||..|+.++|++|+++|++++..+.+|.||||+|+..|+.+++++
T Consensus       152 ~i~~~~~~i~k~Ll~~Gad--vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~  229 (682)
T PHA02876        152 RIQQDELLIAEMLLEGGAD--VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA  229 (682)
T ss_pred             HHHCCcHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHH
Confidence            3344444444445555444  45677889999999999999999999999999999888888888888888887776655


Q ss_pred             HH-----------------------------HcCCCCCCCCCCCCcHHHHHHHcCCh-HHHHHHHhcCCCCCcc--cccc
Q 003425          591 LI-----------------------------QKGVDINLKDNFGNTPLLEAIKYGND-GAASLLVKEGASLNVE--EAGS  638 (821)
Q Consensus       591 Ll-----------------------------~~g~~~~~~~~~g~tpL~~A~~~~~~-~~v~~Ll~~~~~~~~~--~~~t  638 (821)
                      |+                             +.|++++..|..|.||||+|+..++. +++++|++.|++++..  +|.|
T Consensus       230 Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~T  309 (682)
T PHA02876        230 IIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGET  309 (682)
T ss_pred             HHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCC
Confidence            44                             44556777777888888888888875 5788888888887765  4778


Q ss_pred             hhhHHHhcC-CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Q 003425          639 FLCTAVARG-DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE-GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN  716 (821)
Q Consensus       639 ~l~~A~~~~-~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~  716 (821)
                      |||.|+..| +.++++.|+..|++++..|..|.||||+|+.. ++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       310 pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~  389 (682)
T PHA02876        310 PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV  389 (682)
T ss_pred             HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHH
Confidence            888888888 57888888888888888888888888888774 4677788888888888888888888888888888888


Q ss_pred             HHHHHHhccccccccCCCCCCcccc
Q 003425          717 LIKLLEDAKSTQLLEFPHGFQDTAD  741 (821)
Q Consensus       717 i~~~Ll~~~a~~~~~~~~~~~~~~~  741 (821)
                      ++++|+++|+++...+..|.++.+.
T Consensus       390 iv~~Ll~~gad~~~~~~~g~T~Lh~  414 (682)
T PHA02876        390 IINTLLDYGADIEALSQKIGTALHF  414 (682)
T ss_pred             HHHHHHHCCCCccccCCCCCchHHH
Confidence            8888888888777777666666553

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.4e-28  Score=273.04  Aligned_cols=222  Identities=19%  Similarity=0.169  Sum_probs=187.9

Q ss_pred             hhhhhhhcccccccccchhhhHhhhHHHHhhc--CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC------CHHHHH
Q 003425          518 DLRLKQLQSDITFHISKHEAELALKVNSAAYH--GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG------YEEIMT  589 (821)
Q Consensus       518 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~--g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g------~~~~v~  589 (821)
                      +....+++++.+.+  .. ..|.||||.++..  ++.++|+.|+++|+|+|.++ .+.||||.|+.++      +.++++
T Consensus        17 ~~v~~LL~~GadvN--~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~   92 (494)
T PHA02989         17 NALEFLLRTGFDVN--EE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVK   92 (494)
T ss_pred             HHHHHHHHcCCCcc--cc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHH
Confidence            34445555555543  33 4577888765543  47999999999999999886 5799999998754      578999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHc---CChHHHHHHHhcCCCC-Cc--ccccchhhHHHhc--CCHHHHHHHHHCCCC
Q 003425          590 FLIQKGVDINLKDNFGNTPLLEAIKY---GNDGAASLLVKEGASL-NV--EEAGSFLCTAVAR--GDSDLLKRVLSNGID  661 (821)
Q Consensus       590 ~Ll~~g~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~-~~--~~~~t~l~~A~~~--~~~~~v~~Ll~~g~~  661 (821)
                      +|+++|+|+|.+|..|.||||.|+..   ++.+++++|+++|+++ +.  ..|.||||.|+..  ++.+++++|+++|++
T Consensus        93 ~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989         93 LLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            99999999999999999999988765   6789999999999999 55  3589999998764  688999999999999


Q ss_pred             CCC-CCCCCCcHHHHHHHcC----cHHHHHHHHHcCCCCCC--------------------------------------C
Q 003425          662 PNT-RDYDLRTPLHVAASEG----LYLMAKLLVEAGASVFP--------------------------------------K  698 (821)
Q Consensus       662 ~~~-~d~~g~T~Lh~A~~~g----~~~~v~~Ll~~ga~~~~--------------------------------------~  698 (821)
                      ++. .+..|.||||.|+..+    +.+++++|+++|++++.                                      +
T Consensus       173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~  252 (494)
T PHA02989        173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKK  252 (494)
T ss_pred             ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCC
Confidence            998 6889999999998764    89999999999887654                                      4


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          699 DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       699 d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      |..|+||||+|+..|+.+++++|+++|++++..+..|.+|.+.+.
T Consensus       253 d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        253 DKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             CCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            556999999999999999999999999999999999999987543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=261.94  Aligned_cols=221  Identities=24%  Similarity=0.302  Sum_probs=196.7

Q ss_pred             hhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH----
Q 003425          518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ----  593 (821)
Q Consensus       518 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~----  593 (821)
                      ......++.+  .+++-.|..+.||||.||..++.|..+.|++.|+|+-..|.+|++|+|.|++.|..++.+..+.    
T Consensus       135 s~L~~Ll~~~--~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~  212 (929)
T KOG0510|consen  135 SCLKLLLDYG--ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGY  212 (929)
T ss_pred             HHHHHHHHhc--CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccc
Confidence            3334444444  5677788899999999999999998899999999999999999999999999999999999998    


Q ss_pred             -cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc-----------------ccccchhhHHHhcCCHHHHHHH
Q 003425          594 -KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV-----------------EEAGSFLCTAVARGDSDLLKRV  655 (821)
Q Consensus       594 -~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~-----------------~~~~t~l~~A~~~~~~~~v~~L  655 (821)
                       ++..+|.-+..|.||||.|+..|+.++++.+++.|+....                 .+|.||||+||+.|+.+.++.|
T Consensus       213 ~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~L  292 (929)
T KOG0510|consen  213 ERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNL  292 (929)
T ss_pred             hhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHH
Confidence             6788999999999999999999999999999998764432                 3589999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-cC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc---
Q 003425          656 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL---  730 (821)
Q Consensus       656 l~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~---  730 (821)
                      +..|++++.++.++.||||.||.+|+.++|+-||+ .| ...|..|..|.||||+|+.+||..++++|++.||....   
T Consensus       293 l~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e  372 (929)
T KOG0510|consen  293 LGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSE  372 (929)
T ss_pred             HHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccc
Confidence            99999999999999999999999999999999999 54 56788999999999999999999999999999999872   


Q ss_pred             cCCCCCCccc
Q 003425          731 EFPHGFQDTA  740 (821)
Q Consensus       731 ~~~~~~~~~~  740 (821)
                      .+..|.++.+
T Consensus       373 ~D~dg~TaLH  382 (929)
T KOG0510|consen  373 ADSDGNTALH  382 (929)
T ss_pred             cccCCchhhh
Confidence            3566666655

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=8.6e-28  Score=270.34  Aligned_cols=200  Identities=22%  Similarity=0.222  Sum_probs=179.7

Q ss_pred             HHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--
Q 003425          544 NSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR-----GYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG--  616 (821)
Q Consensus       544 ~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~--  616 (821)
                      +.+...++.++++.|+++|+|+|..|..|.||||.|+.+     ++.+++++|+++|+|+|.+|..|.||||+|+..+  
T Consensus        43 yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~  122 (489)
T PHA02798         43 YLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI  122 (489)
T ss_pred             HHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc
Confidence            344556789999999999999999999999999999865     6789999999999999999999999999999976  


Q ss_pred             -ChHHHHHHHhcCCCCCccc--ccchhhHHHhcCC---HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHc----CcHHHH
Q 003425          617 -NDGAASLLVKEGASLNVEE--AGSFLCTAVARGD---SDLLKRVLSNGIDPNTRD-YDLRTPLHVAASE----GLYLMA  685 (821)
Q Consensus       617 -~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~---~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~----g~~~~v  685 (821)
                       +.+++++|+++|++++..+  |.||||.|+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++
T Consensus       123 ~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~iv  202 (489)
T PHA02798        123 NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADIL  202 (489)
T ss_pred             ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHH
Confidence             7899999999999998764  8899999999998   999999999999999885 5789999998765    478899


Q ss_pred             HHHHHcCCC---------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425          686 KLLVEAGAS---------------------------------------VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS  726 (821)
Q Consensus       686 ~~Ll~~ga~---------------------------------------~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a  726 (821)
                      ++|+++|++                                       +|.+|..|+||||+|+..|+.+++++|+++||
T Consensus       203 k~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GA  282 (489)
T PHA02798        203 KLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGG  282 (489)
T ss_pred             HHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCC
Confidence            999888764                                       44567789999999999999999999999999


Q ss_pred             cccccCCCCCCcccccc
Q 003425          727 TQLLEFPHGFQDTADKR  743 (821)
Q Consensus       727 ~~~~~~~~~~~~~~~~~  743 (821)
                      +++..+..|.+|...+.
T Consensus       283 din~~d~~G~TpL~~A~  299 (489)
T PHA02798        283 DINIITELGNTCLFTAF  299 (489)
T ss_pred             cccccCCCCCcHHHHHH
Confidence            99999999999987544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-28  Score=246.75  Aligned_cols=190  Identities=26%  Similarity=0.372  Sum_probs=175.3

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCC--------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRT--------DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG  605 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~--------d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g  605 (821)
                      ...+|.|||..||++|+.++|++|+++ ++++...        .-+|-+||-.|+..||.++|+.|+++|+++|......
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TN  117 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTN  117 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccC
Confidence            445677999999999999999999984 7776533        3568899999999999999999999999999998888


Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 003425          606 NTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL  683 (821)
Q Consensus       606 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~  683 (821)
                      .|||..||.-|+.+++++|+++|+|++..+  |.|.||.||.+|+.+++++|++.|+|+|.++..|+|+||.|+..|+++
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            899999999999999999999999998865  899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425          684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK  725 (821)
Q Consensus       684 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~  725 (821)
                      ++++|+.+|+.++. |..|.|||..|+..|+.++|++|++..
T Consensus       198 ivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  198 IVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             HHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCC
Confidence            99999999998865 566999999999999999999999743

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=5.8e-26  Score=269.57  Aligned_cols=186  Identities=20%  Similarity=0.218  Sum_probs=165.5

Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCC
Q 003425          550 GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA  629 (821)
Q Consensus       550 g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  629 (821)
                      .+.++-..+.+.+..  ..+.++.++||.||..|+.++++.|+++|+|+|..|..|.||||+|+..|+.+++++|+++|+
T Consensus       505 ~~l~v~~ll~~~~~~--~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga  582 (823)
T PLN03192        505 HDLNVGDLLGDNGGE--HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHAC  582 (823)
T ss_pred             ccccHHHHHhhcccc--cCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence            444455555555443  234567899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 003425          630 SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD  707 (821)
Q Consensus       630 ~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  707 (821)
                      +++..  +|.||||.|+..|+.+++++|++.++..+.  ..|.+|||.||..|+.++++.|+++|+|+|.+|.+|+||||
T Consensus       583 din~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        583 NVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            99875  489999999999999999999998876654  45789999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccCCCC-CCcc
Q 003425          708 EGRMCGNKNLIKLLEDAKSTQLLEFPHG-FQDT  739 (821)
Q Consensus       708 ~A~~~~~~~i~~~Ll~~~a~~~~~~~~~-~~~~  739 (821)
                      +|+..|+.+++++|+++||+.+..+..| .++.
T Consensus       661 ~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        661 VAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             HHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence            9999999999999999999999988877 5443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=263.38  Aligned_cols=194  Identities=17%  Similarity=0.122  Sum_probs=167.2

Q ss_pred             cchhhhHhhhHHHHhhc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCC
Q 003425          533 SKHEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE----IMTFLIQKGVDINLKDNFG  605 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g  605 (821)
                      +..|..|.||||+||..   |+.++|+.|++.|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+.  
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--  103 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--  103 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--
Confidence            45688899999997555   8899999999999999999999999999999999854    56788887554555442  


Q ss_pred             CcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHH--hcCCHHHHHHHHHCCCCCCCCCC---CC---------
Q 003425          606 NTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAV--ARGDSDLLKRVLSNGIDPNTRDY---DL---------  669 (821)
Q Consensus       606 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~--~~~~~~~v~~Ll~~g~~~~~~d~---~g---------  669 (821)
                      .+++|.|+..++.+++++|+++|++++.+  +|.||||.|+  ..|+.+++++|+++|+++|..|.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            37788899999999999999999999985  5899999654  57899999999999999987653   34         


Q ss_pred             --CcHHHHHHH-----------cCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhcccccc
Q 003425          670 --RTPLHVAAS-----------EGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK--NLIKLLEDAKSTQL  729 (821)
Q Consensus       670 --~T~Lh~A~~-----------~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~--~i~~~Ll~~~a~~~  729 (821)
                        .||||+|+.           .++.+++++|+++|||+|.+|.+|.||||+|+.+|+.  +++++|++ |++..
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccc
Confidence              599999986           4689999999999999999999999999999999985  79999985 77654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=5.7e-27  Score=235.72  Aligned_cols=197  Identities=26%  Similarity=0.332  Sum_probs=173.0

Q ss_pred             HHhhcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC--------CCCCCcHHH
Q 003425          545 SAAYHGDLYQLEGLIRAGAD-----PNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLK--------DNFGNTPLL  610 (821)
Q Consensus       545 ~A~~~g~~~~v~~Ll~~g~~-----~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~--------~~~g~tpL~  610 (821)
                      .|++.|.+..+..|+-...+     +-....+|.|||..||++||.++|++|++ .++++...        ...|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            67788888887777754322     11234678899999999999999999999 47776543        346889999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      .|+..||.++|+.|+++|+++|...  ..|||-.||..|+.+++++|+++|+|++..|..|.|.||+||..|+.+++++|
T Consensus        90 aAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            9999999999999999999999754  56999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          689 VEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       689 l~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ++.|||+|.++..|+||||.|+..|+.+++++|+++|+...... +|.+|...+
T Consensus       170 le~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~A  222 (615)
T KOG0508|consen  170 LEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLA  222 (615)
T ss_pred             HHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-CCCchHHHH
Confidence            99999999999999999999999999999999999999876554 488886543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=6.7e-27  Score=212.12  Aligned_cols=201  Identities=23%  Similarity=0.270  Sum_probs=184.9

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      ..+++|+.+++.|+-+|+...+..++..|+..|..+..+++|+.+++...+.+.+..+.++  .+|..|..|.|||.+|+
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAA  168 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHH
Confidence            4566699999999999999999999999999999999999999999999999988777765  68899999999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ..|++++|++|++.|++++..  ...++|.+|+..|..++|++|+.++.|+|..|.+|.|||-+|++.|+.+|++.|+..
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            999999999999999999874  467999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425          692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ  737 (821)
Q Consensus       692 ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~  737 (821)
                      |||++..+..|.++++.|+..|+. +|+..++..+....++..-.+
T Consensus       249 GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~  293 (296)
T KOG0502|consen  249 GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRT  293 (296)
T ss_pred             CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCC
Confidence            999999999999999999999998 788888877776666544433

>PHA02730 ankyrin-like protein; Provisional

Probab=99.94  E-value=1e-25  Score=248.75  Aligned_cols=190  Identities=15%  Similarity=0.138  Sum_probs=165.2

Q ss_pred             chhhhHhhhHHHHhhcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcCC--CCCCCCCCCC
Q 003425          534 KHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGV--DINLKDNFGN  606 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g---~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~--~~~~~~~~g~  606 (821)
                      ..|.+|.||||+|+..|   +.++|+.|+++|+|++.+|..|+||||+|+..+  +.+++++|+++|+  +++..+..+.
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            66778999999999997   599999999999999999999999999999976  7999999999965  4577787799


Q ss_pred             cHHHHHHH--cCChHHHHHHHh-cCCCCCcc-------cccchhhHHHhcCCHHHHHHHHHCCCCCC-------CCCCCC
Q 003425          607 TPLLEAIK--YGNDGAASLLVK-EGASLNVE-------EAGSFLCTAVARGDSDLLKRVLSNGIDPN-------TRDYDL  669 (821)
Q Consensus       607 tpL~~A~~--~~~~~~v~~Ll~-~~~~~~~~-------~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~-------~~d~~g  669 (821)
                      +|||.++.  +++.+++++|++ .+++++..       .|.+|+++|...++.++|++|+++|++++       ..+..+
T Consensus       116 ~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~  195 (672)
T PHA02730        116 FDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR  195 (672)
T ss_pred             chHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc
Confidence            99999998  899999999996 66776654       46799999999999999999999999995       234445


Q ss_pred             C-cHHHHH------HHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHh
Q 003425          670 R-TPLHVA------ASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE--GRMCGNKNLIKLLED  723 (821)
Q Consensus       670 ~-T~Lh~A------~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~--A~~~~~~~i~~~Ll~  723 (821)
                      . |.||++      ...++.+++++|+++|||+|.+|.+|.||||+  |...|+.|++++|++
T Consensus       196 c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        196 CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            5 445533      45678999999999999999999999999995  555677999999999

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=221.74  Aligned_cols=173  Identities=20%  Similarity=0.189  Sum_probs=155.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChHHHHHHHhcCCCCCcc---cccchhhHH
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVE---EAGSFLCTA  643 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~---~~~t~l~~A  643 (821)
                      ...+.||||+|+..|+.++++.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++..   .|.||||.|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            35679999999999999999999986   5677889999999999855  899999999999999875   478999998


Q ss_pred             Hhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH--cCcHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHHH
Q 003425          644 VAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS--EGLYLMAKLLVEAGASVFPKDRWGNTPLDE-GRMCGNKNL  717 (821)
Q Consensus       644 ~~~---~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~--~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~-A~~~~~~~i  717 (821)
                      +..   ++.+++++|+++|+++|.+|..|.||||.|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.++
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            764   47999999999999999999999999999986  468999999999999999999999999995 567889999


Q ss_pred             HHHHHhccccccccCCCCCCccccccC
Q 003425          718 IKLLEDAKSTQLLEFPHGFQDTADKRN  744 (821)
Q Consensus       718 ~~~Ll~~~a~~~~~~~~~~~~~~~~~~  744 (821)
                      +++|+++|+++..++..|.++.+.+..
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            999999999999999999888765543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.3e-25  Score=241.08  Aligned_cols=234  Identities=15%  Similarity=0.088  Sum_probs=189.1

Q ss_pred             HHHHHhc-CCcchhhhhhhcccccccccchhhhHhhhHHHHhh-cCCHHHHHHHHHcCCCCC------------------
Q 003425          507 VLTNLLQ-GKESDLRLKQLQSDITFHISKHEAELALKVNSAAY-HGDLYQLEGLIRAGADPN------------------  566 (821)
Q Consensus       507 ~l~~~l~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~-~g~~~~v~~Ll~~g~~~n------------------  566 (821)
                      +++.+.. ..+.+....+..++.  +++..+..+.+++|+|+. .|+.+++++|+++|+|++                  
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GA--dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~  151 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGL--EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAE  151 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCC--CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccccc
Confidence            4544444 333445555566555  444556678999999966 699999999999998742                  


Q ss_pred             ------------------CCCCCCCcHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChH
Q 003425          567 ------------------RTDYDGRSPLHLAASRG-------YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG--NDG  619 (821)
Q Consensus       567 ------------------~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~--~~~  619 (821)
                                        ..|..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+.  ..+
T Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~e  231 (631)
T PHA02792        152 YYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKRE  231 (631)
T ss_pred             ccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHH
Confidence                              23456999999999999       899999999999999999999999999999988  666


Q ss_pred             HHHHHHhc------------------------------------------------------------------------
Q 003425          620 AASLLVKE------------------------------------------------------------------------  627 (821)
Q Consensus       620 ~v~~Ll~~------------------------------------------------------------------------  627 (821)
                      ++++|++.                                                                        
T Consensus       232 i~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~  311 (631)
T PHA02792        232 IFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLS  311 (631)
T ss_pred             HHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHH
Confidence            77666542                                                                        


Q ss_pred             -------------------CCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCC--CcHHHHHHHcCcH---H
Q 003425          628 -------------------GASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDL--RTPLHVAASEGLY---L  683 (821)
Q Consensus       628 -------------------~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g--~T~Lh~A~~~g~~---~  683 (821)
                                         |++.........++.|+..|+.+++++|+++|++++.+|..|  .||||.|+..+..   +
T Consensus       312 ~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~  391 (631)
T PHA02792        312 EYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLS  391 (631)
T ss_pred             HHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHH
Confidence                               111110112234778899999999999999999999998775  6999998876654   4


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       684 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ++++|+++|||+|.+|..|+||||+|+..++.+++++|+++|++.+..+..|.++...+
T Consensus       392 IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        392 ILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             HHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999998887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=2.2e-26  Score=263.21  Aligned_cols=196  Identities=35%  Similarity=0.408  Sum_probs=156.3

Q ss_pred             ccchhhhHhhhHHHHhhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          532 ISKHEAELALKVNSAAYHG-DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g-~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      .+..+..|.|++|.|+..| ..+....+++.|+++|.....|.||||.|+..|+.++++.|++.++..+.....|.+++|
T Consensus       433 ~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lh  512 (1143)
T KOG4177|consen  433 PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLH  512 (1143)
T ss_pred             hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhh
Confidence            3445556677777777777 667777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      .|...+...+++.++++|++++..+  +.||||.||..|+.++|++|+++|+|++.+|+.|+||||.||..|+.+|+++|
T Consensus       513 la~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LL  592 (1143)
T KOG4177|consen  513 LAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELL  592 (1143)
T ss_pred             hhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHH
Confidence            7777777777777777777777654  55888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          689 VEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       689 l~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      +++||++|..|.+|.|||++|+..|+.+++++|+..+++
T Consensus       593 lk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  593 LKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            888888888888888888888888888888888888888

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.4e-25  Score=251.41  Aligned_cols=192  Identities=18%  Similarity=0.161  Sum_probs=168.5

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH----HHHHH
Q 003425          552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG----AASLL  624 (821)
Q Consensus       552 ~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~----~v~~L  624 (821)
                      ++.++.|+..|..++.+|.+|+||||+||..   |+.+++++|+++|++++..+..|.||||+|+..|+.+    +++.|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5778999999999999999999999998655   8899999999999999999999999999999999854    56788


Q ss_pred             HhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH--HcCcHHHHHHHHHcCCCCCCCCC--
Q 003425          625 VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA--SEGLYLMAKLLVEAGASVFPKDR--  700 (821)
Q Consensus       625 l~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~--~~g~~~~v~~Ll~~ga~~~~~d~--  700 (821)
                      ++.+...+..+..++++.|+.+++.+++++|+++|+|+|.+|..|.||||.|+  ..|+.+++++|+++||+++.+|.  
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            88754455555567888899999999999999999999999999999999654  57899999999999999987653  


Q ss_pred             -CC-----------CCHHHHHHH-----------cCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          701 -WG-----------NTPLDEGRM-----------CGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       701 -~g-----------~t~l~~A~~-----------~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                       .|           .||||+|+.           .++.+++++|+++|++.+..+..|.+|.+...
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~  237 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI  237 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH
Confidence             34           599999986           46899999999999999999999999887443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=2.8e-25  Score=254.30  Aligned_cols=211  Identities=30%  Similarity=0.363  Sum_probs=201.8

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      .+.....|.||||.|+..++.++++.+++.|++++..+..|.||+|.|+..| ..+++..+++.|+++|.....|.||||
T Consensus       400 ~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lh  479 (1143)
T KOG4177|consen  400 PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLH  479 (1143)
T ss_pred             cccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchh
Confidence            6678889999999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCc--ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~--~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      .|+..|+.+++..|++.++..+.  ..+-+++|.|...+...+++.++++|++++.++..|.||||.||.+|+.++|++|
T Consensus       480 laaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfL  559 (1143)
T KOG4177|consen  480 LAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFL  559 (1143)
T ss_pred             hhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHh
Confidence            99999999999999999865554  4588999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          689 VEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       689 l~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      +++|||++.+++.|+||||.|+..|+.+|+.+|+++||+++..+..|.++....
T Consensus       560 Le~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA  613 (1143)
T KOG4177|consen  560 LEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIA  613 (1143)
T ss_pred             hhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHH
Confidence            999999999999999999999999999999999999999999999999998744

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=8.2e-25  Score=230.65  Aligned_cols=184  Identities=16%  Similarity=0.114  Sum_probs=170.8

Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHH--cCChHHHHHHHh
Q 003425          555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN------LKDNFGNTPLLEAIK--YGNDGAASLLVK  626 (821)
Q Consensus       555 v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~tpL~~A~~--~~~~~~v~~Ll~  626 (821)
                      -++++.+|+++|..+.+|     +|+..+..+++++|+.+|++++      .++..++|+||+|+.  .|+.+++++|++
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~  139 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD  139 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH
Confidence            578889999999988887     8999999999999999999999      788899999999999  899999999999


Q ss_pred             cCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC------CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC
Q 003425          627 EGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD------YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR  700 (821)
Q Consensus       627 ~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d------~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~  700 (821)
                      +||+++..++.||+|.|+..++.+++++|+++|++.+...      ..|.||+|.|+..++.+++++|+++|||+|.+|.
T Consensus       140 ~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~  219 (437)
T PHA02795        140 HGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDA  219 (437)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCC
Confidence            9999999888999999999999999999999998543222      3488999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          701 WGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       701 ~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      .|.||||+|+..|+.+++++|+++||+.+..+..|.++.+.+.
T Consensus       220 ~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa  262 (437)
T PHA02795        220 GGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAV  262 (437)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999987554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=4e-24  Score=236.19  Aligned_cols=194  Identities=15%  Similarity=0.091  Sum_probs=128.5

Q ss_pred             hhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHH-------------------------------
Q 003425          547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHL--AASRGYEEIMTFLIQ-------------------------------  593 (821)
Q Consensus       547 ~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~--A~~~g~~~~v~~Ll~-------------------------------  593 (821)
                      ...++.++++.|+++|+|+|.+|.+|.||||+  |+..|+.|++++|++                               
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVT  289 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcc
Confidence            34567777777777777777777777777774  444556777777777                               


Q ss_pred             -cCCCCCC--------------------CCCCCCc---------------------HHHHHHHcC---ChHHHHHHHhcC
Q 003425          594 -KGVDINL--------------------KDNFGNT---------------------PLLEAIKYG---NDGAASLLVKEG  628 (821)
Q Consensus       594 -~g~~~~~--------------------~~~~g~t---------------------pL~~A~~~~---~~~~v~~Ll~~~  628 (821)
                       +|+|...                    .+..|.+                     .||.-...+   +.+++++|+++|
T Consensus       290 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        290 PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence             5666544                    3444543                     455545544   467777777777


Q ss_pred             CCCCcc-cccchhhHHHhcCC----HHHHHHHHHCCC--CCCCCCCCCCcHHHH---HHHcC---------cHHHHHHHH
Q 003425          629 ASLNVE-EAGSFLCTAVARGD----SDLLKRVLSNGI--DPNTRDYDLRTPLHV---AASEG---------LYLMAKLLV  689 (821)
Q Consensus       629 ~~~~~~-~~~t~l~~A~~~~~----~~~v~~Ll~~g~--~~~~~d~~g~T~Lh~---A~~~g---------~~~~v~~Ll  689 (821)
                      ++++.. .|.||||.|+..++    .+++++|+++|+  ++|.+|..|.||||.   |...+         ..+++++|+
T Consensus       370 AdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        370 ATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            777654 36677777776664    677777777776  467777777777763   22221         124577777


Q ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCC-CCCCccc
Q 003425          690 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFP-HGFQDTA  740 (821)
Q Consensus       690 ~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~-~~~~~~~  740 (821)
                      ++|||+|.+|..|+||||+|+..++.+++++|+++||+++..+. .|.++..
T Consensus       450 s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~  501 (672)
T PHA02730        450 KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQ  501 (672)
T ss_pred             hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHH
Confidence            77777777777777777777777777777777777777776665 3555554

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.3e-25  Score=230.63  Aligned_cols=273  Identities=16%  Similarity=0.184  Sum_probs=202.3

Q ss_pred             CcccccccccCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecC---CCcCeehhHHHHHHHHHHhHhheeeE
Q 003425           50 RQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCL  126 (821)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~Di~l~f~t  126 (821)
                      ++.++++.|.+.+++++.|.+.....+..+++++++.++++..+. .+.+.   ....++++|+++.++|.+|+++|+|.
T Consensus        70 Rn~r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~S-Ti~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWS  148 (654)
T KOG1419|consen   70 RNARYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLS-TIEEYEKLASGILYILEIVMIVFFGLEFIVRLWS  148 (654)
T ss_pred             hhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            336677888899999999999877777777666655555544433 33322   23458899999999999999999988


Q ss_pred             EEEeC----CceEEeeccHHHHHHHhhhhh-HHHHHhhhhHHHHHhhc--C---chhHHHHHHHHHHHHHHHHHHHHHhh
Q 003425          127 AYRDS----QTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--G---RKEAVRYLLWIRLYRVRKVSQFFHKM  196 (821)
Q Consensus       127 ~y~~~----~~~~~v~~~~~I~~~Ylk~~f-~iDlis~lP~~~~~~~~--~---~~~~~~~l~llrl~rl~r~~~~~~~~  196 (821)
                      +-+.-    -.|+         .+|.+..| +||++.++....++...  +   ....++-||++.++|++|+.+....|
T Consensus       149 AGC~~rYrG~~GR---------LrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTW  219 (654)
T KOG1419|consen  149 AGCCCRYRGWYGR---------LRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTW  219 (654)
T ss_pred             cccccccccceee---------EEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchh
Confidence            74332    1122         56777765 89998766543333222  1   23568899999999999999988888


Q ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHH
Q 003425          197 EKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVT  276 (821)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t  276 (821)
                      +-...+-+...+-+....++.|+..+++..+.|++.....+.+.                   .+-|..|.+|+||+++|
T Consensus       220 KLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~-------------------n~~F~TyADALWWG~IT  280 (654)
T KOG1419|consen  220 KLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGT-------------------NDEFPTYADALWWGVIT  280 (654)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------------------cccchhHHHHHHhhhee
Confidence            77777777887888888899999999998888887654333221                   12267899999999999


Q ss_pred             hhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003425          277 MTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLR  356 (821)
Q Consensus       277 ~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~  356 (821)
                      +|||||||.+|+|+.+++++.++.++|+.+||++-|++++-+.-..++++-|      ++|-++++.-..|.+-..+||.
T Consensus       281 ltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQ------KHf~rrr~pAA~LIQc~WR~ya  354 (654)
T KOG1419|consen  281 LTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQ------KHFNRRRNPAASLIQCAWRYYA  354 (654)
T ss_pred             EEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHH------HHHHhhcchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988764422222212      3455666666677777777765


Q ss_pred             H
Q 003425          357 L  357 (821)
Q Consensus       357 ~  357 (821)
                      -
T Consensus       355 a  355 (654)
T KOG1419|consen  355 A  355 (654)
T ss_pred             c
Confidence            3

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.2e-23  Score=227.81  Aligned_cols=200  Identities=14%  Similarity=0.104  Sum_probs=163.9

Q ss_pred             ccccccchhhhHhhhHHHHhhcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHH-----
Q 003425          528 ITFHISKHEAELALKVNSAAYHG-------DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQ-----  593 (821)
Q Consensus       528 ~~~~~~~~~~~~~~~L~~A~~~g-------~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--~~~~v~~Ll~-----  593 (821)
                      .+..++..+..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+.+.  ..+++++|++     
T Consensus       164 ~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~  243 (631)
T PHA02792        164 YDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSG  243 (631)
T ss_pred             cccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccc
Confidence            34445666777889999999888       789999999999999888888999999988877  5555555543     


Q ss_pred             --------------------------------------------------------------------------------
Q 003425          594 --------------------------------------------------------------------------------  593 (821)
Q Consensus       594 --------------------------------------------------------------------------------  593 (821)
                                                                                                      
T Consensus       244 ~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~iei  323 (631)
T PHA02792        244 NELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINV  323 (631)
T ss_pred             cchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHH
Confidence                                                                                            


Q ss_pred             ------cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc----ccchhhHHHhcCCHH---HHHHHHHCCC
Q 003425          594 ------KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----AGSFLCTAVARGDSD---LLKRVLSNGI  660 (821)
Q Consensus       594 ------~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~t~l~~A~~~~~~~---~v~~Ll~~g~  660 (821)
                            +|++.+  ...+..+++.|+..|+.+++++|+++|++++.++    +.||||.|+..+..+   +++.|+++|+
T Consensus       324 IK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA  401 (631)
T PHA02792        324 IKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID  401 (631)
T ss_pred             HHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC
Confidence                  333222  1124567899999999999999999999998765    348999888776654   6888999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH--c-C-------CHHHHHHHHhcccccc
Q 003425          661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM--C-G-------NKNLIKLLEDAKSTQL  729 (821)
Q Consensus       661 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~--~-~-------~~~i~~~Ll~~~a~~~  729 (821)
                      ++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||+++|+.  . +       ..+++++|+++|++..
T Consensus       402 DIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        402 DINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             ccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999999999999999999999999999999999999976  2 2       2567899999987753

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.8e-25  Score=217.10  Aligned_cols=179  Identities=18%  Similarity=0.298  Sum_probs=128.3

Q ss_pred             CeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhc-----------Cc
Q 003425          104 NLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKAS-----------GR  171 (821)
Q Consensus       104 ~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~-----------~~  171 (821)
                      .+++++.+|.+||.+++++||            +.+|.+  .-|.++ ..+||++|++|+.+.+...           ..
T Consensus       254 PFFiVEt~CIiWFtfEllvRf------------~aCPsK--~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqq  319 (507)
T KOG1545|consen  254 PFFIVETLCIIWFTFELLVRF------------FACPSK--ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQ  319 (507)
T ss_pred             chHhHHHHHHHHHhHHHHHHH------------hcCccH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchh
Confidence            478999999999999999976            455666  678888 5599999999987654221           11


Q ss_pred             h---hHHHHHHHHHHHHHHHHHHHHHhhhhhHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccc
Q 003425          172 K---EAVRYLLWIRLYRVRKVSQFFHKMEKDIRI-NYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSL  247 (821)
Q Consensus       172 ~---~~~~~l~llrl~rl~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~  247 (821)
                      .   ..+|++|+.|++|++|+.|..+.++-..+. ......+..+++++++..-+++...|+.+...+.           
T Consensus       320 aMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~-----------  388 (507)
T KOG1545|consen  320 AMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPE-----------  388 (507)
T ss_pred             hhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCc-----------
Confidence            1   234444444444455555554445443332 3344456666666666666666666655443222           


Q ss_pred             cCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          248 KMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                                   +-|.+.++||||+++|||||||||+.|.|..++++..+|.+.|++..|+++..|.+.+.-
T Consensus       389 -------------S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny  448 (507)
T KOG1545|consen  389 -------------SHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY  448 (507)
T ss_pred             -------------cCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence                         124578899999999999999999999999999999999999999999999988777655

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.7e-23  Score=244.71  Aligned_cols=219  Identities=20%  Similarity=0.111  Sum_probs=174.2

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHH-HHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVN-SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--  583 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g--  583 (821)
                      .+..+..+++.......+++....+++..|..|.|||| .|+.+++.++++.|++.|+    .+..|.||||.|+.++  
T Consensus        20 ~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~   95 (743)
T TIGR00870        20 AFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVD   95 (743)
T ss_pred             HHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHH
Confidence            33445555555555555655345667778899999999 8999999999999999987    6678999999998732  


Q ss_pred             -CHHHHHHHHHcCCC------CC----CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc----------------cc
Q 003425          584 -YEEIMTFLIQKGVD------IN----LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE----------------EA  636 (821)
Q Consensus       584 -~~~~v~~Ll~~g~~------~~----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~----------------~~  636 (821)
                       ...+++.+.+.+.+      ++    ..+..|.||||+|+.+|+.+++++|+++|++++..                .|
T Consensus        96 ~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g  175 (743)
T TIGR00870        96 AVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG  175 (743)
T ss_pred             HHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccccc
Confidence             23344444444422      11    12356999999999999999999999999999853                37


Q ss_pred             cchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC---------cHHHHHHHHHcCCCC-------CCCCC
Q 003425          637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG---------LYLMAKLLVEAGASV-------FPKDR  700 (821)
Q Consensus       637 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g---------~~~~v~~Ll~~ga~~-------~~~d~  700 (821)
                      .+|||.|+..|+.+++++|+++|+|+|.+|..|+||||+|+..+         ...+.+++++.+++.       +..|.
T Consensus       176 ~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~  255 (743)
T TIGR00870       176 ESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNH  255 (743)
T ss_pred             ccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCC
Confidence            79999999999999999999999999999999999999999987         234667777766554       67799


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          701 WGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       701 ~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      +|.||||+|+..|+.+++++|++.+.+..
T Consensus       256 ~g~TPL~~A~~~g~~~l~~lLL~~~~~~k  284 (743)
T TIGR00870       256 QGLTPLKLAAKEGRIVLFRLKLAIKYKQK  284 (743)
T ss_pred             CCCCchhhhhhcCCccHHHHHHHHHHhcc
Confidence            99999999999999999999999765543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=2.5e-23  Score=203.27  Aligned_cols=159  Identities=28%  Similarity=0.390  Sum_probs=145.8

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHc-----CChHHHHHHHhcCCCCCcc---c
Q 003425          565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDNFGNTPLLEAIKY-----GNDGAASLLVKEGASLNVE---E  635 (821)
Q Consensus       565 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~tpL~~A~~~-----~~~~~v~~Ll~~~~~~~~~---~  635 (821)
                      +|..|.+|+|+||||+.+++.++|+.||+.| ++++.+|.-|.||+++|+..     .+..+|.-|...| |+|.+   .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            6888999999999999999999999999986 78999999999999999864     3567788887765 56654   4


Q ss_pred             ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCC
Q 003425          636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-GASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       636 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~  714 (821)
                      |+|+|++|+.+|+.++|+.||..|+|+|.+|.+|.|+|+.||.+||.|++++||.. ++|....|.+|.|+|.+|...||
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            89999999999999999999999999999999999999999999999999999986 79999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 003425          715 KNLIKLLEDA  724 (821)
Q Consensus       715 ~~i~~~Ll~~  724 (821)
                      .+|.-+|-.+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9999888654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=9.6e-23  Score=210.44  Aligned_cols=200  Identities=31%  Similarity=0.361  Sum_probs=166.7

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHH
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA  620 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~  620 (821)
                      -.+..||..|+.+-++.|+..|+++|..+.+|.|+||-||...+.+||++|+++|+++|..|..|+||||.|+.+|+.++
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccc--ccchhhH------------HHhcCC--H------------HHHHHHHHCCCCCCCCCCCCCcH
Q 003425          621 ASLLVKEGASLNVEE--AGSFLCT------------AVARGD--S------------DLLKRVLSNGIDPNTRDYDLRTP  672 (821)
Q Consensus       621 v~~Ll~~~~~~~~~~--~~t~l~~------------A~~~~~--~------------~~v~~Ll~~g~~~~~~d~~g~T~  672 (821)
                      +++|+++|+++...+  |..|...            +.....  +            +=+...+..|.+.+..+..|.|+
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            999999998775543  2322111            111111  1            12333345788888888889999


Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       673 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      ||.|+..|..++.++|+++|.+++.+|.+||||||.|+.-|+.+++++|+++|++.......|.++..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~d  269 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLD  269 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999998888877777655

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=2.6e-23  Score=188.91  Aligned_cols=201  Identities=20%  Similarity=0.153  Sum_probs=184.1

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      ..-+-.|...|+.+.+.......++ +..+|.+|++++|.|+-+++...+..++.+|+..|..+--+++|+.+++...+.
T Consensus        63 e~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L  142 (296)
T KOG0502|consen   63 ESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHL  142 (296)
T ss_pred             CcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHH
Confidence            3344567788888888888776655 556788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCC
Q 003425          619 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK  698 (821)
Q Consensus       619 ~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~  698 (821)
                      +.+..+.++-.+--.+.|.|||.+|+..|+..+|++|++.|+|++...+...|+|.+|++.|..++|++|+.++.|+|.-
T Consensus       143 ~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvy  222 (296)
T KOG0502|consen  143 DVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVY  222 (296)
T ss_pred             HHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCccee
Confidence            99998888877777778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          699 DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       699 d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      |-+|-|||-+|++.||.+|++.|++.||++......|.....
T Consensus       223 DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~md  264 (296)
T KOG0502|consen  223 DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMD  264 (296)
T ss_pred             ccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHH
Confidence            999999999999999999999999999999999988876544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.4e-23  Score=219.17  Aligned_cols=210  Identities=23%  Similarity=0.248  Sum_probs=180.0

Q ss_pred             ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       530 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      ...+..|..|-|+||.||.+|+.++++.|++..+-++..|..|.+|||+|+.+|+.++++.|+.++..+|..+..|.|||
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tpl  119 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPL  119 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCcc
Confidence            34566777899999999999999999999998888888888899999999999999999999999988999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCC--------CCCCCCCCcHHHHHHHc
Q 003425          610 LEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDP--------NTRDYDLRTPLHVAASE  679 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~--------~~~d~~g~T~Lh~A~~~  679 (821)
                      |.|+++||.+++.+|+++|+++-..+  +.|++-.|++-|..++++.|++...++        ..++..+.+|||.|+++
T Consensus       120 hlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  120 HLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKN  199 (854)
T ss_pred             chhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhc
Confidence            99999999999999999998877654  678999999999999999998753221        23445678899999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          680 GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       680 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      |+.++++.|+++|.|+|.....| |+||.|+.+|..+++.+|++.|.+...++.+|.+..+
T Consensus       200 gh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtald  259 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALD  259 (854)
T ss_pred             chHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHH
Confidence            99999999999999999887765 8999999999999999999999998888888766654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.88  E-value=3.2e-22  Score=236.83  Aligned_cols=200  Identities=22%  Similarity=0.185  Sum_probs=167.1

Q ss_pred             hhHhhhHHHHhhcCCHHHHHHHHHc--CCCCCCCCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          537 AELALKVNSAAYHGDLYQLEGLIRA--GADPNRTDYDGRSPLH-LAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       537 ~~~~~~L~~A~~~g~~~~v~~Ll~~--g~~~n~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .++..+++.||..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+    .+..|.||||.|+
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            4678999999999999999999998  8999999999999999 8889999999999999987    6778999999998


Q ss_pred             HcC---ChHHHHHHHhcCCC------CC------cccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC------------
Q 003425          614 KYG---NDGAASLLVKEGAS------LN------VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD------------  666 (821)
Q Consensus       614 ~~~---~~~~v~~Ll~~~~~------~~------~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d------------  666 (821)
                      ..+   ...++..+...+.+      .+      ...|.||||.||.+|+.+++++|+++|++++.++            
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~  170 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVD  170 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCC
Confidence            732   22334444444422      11      1348899999999999999999999999998653            


Q ss_pred             --CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHHhccccc-------
Q 003425          667 --YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG---------NKNLIKLLEDAKSTQ-------  728 (821)
Q Consensus       667 --~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---------~~~i~~~Ll~~~a~~-------  728 (821)
                        ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.++..       
T Consensus       171 ~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~  250 (743)
T TIGR00870       171 SFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELE  250 (743)
T ss_pred             cccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhh
Confidence              25899999999999999999999999999999999999999999987         334667777766654       


Q ss_pred             cccCCCCCCccc
Q 003425          729 LLEFPHGFQDTA  740 (821)
Q Consensus       729 ~~~~~~~~~~~~  740 (821)
                      ...+..|.+|.+
T Consensus       251 ~i~N~~g~TPL~  262 (743)
T TIGR00870       251 VILNHQGLTPLK  262 (743)
T ss_pred             hhcCCCCCCchh
Confidence            556777777655

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=3.6e-22  Score=206.27  Aligned_cols=205  Identities=30%  Similarity=0.362  Sum_probs=167.7

Q ss_pred             CcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003425          515 KESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK  594 (821)
Q Consensus       515 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  594 (821)
                      .+...+...+..+.  ..+..+.+|.|+||.||...+.++|++|++.|+++|..|..||||||.|+..|+..++++|+++
T Consensus        51 ~d~~ev~~ll~~ga--~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~  128 (527)
T KOG0505|consen   51 GDLEEVRKLLNRGA--SPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQH  128 (527)
T ss_pred             ccHHHHHHHhccCC--CccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHh
Confidence            33333444444432  3367788999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChH--------------------------HHHHHHhcCCCCCcc--cccchhhHHHhc
Q 003425          595 GVDINLKDNFGNTPLLEAIKYGNDG--------------------------AASLLVKEGASLNVE--EAGSFLCTAVAR  646 (821)
Q Consensus       595 g~~~~~~~~~g~tpL~~A~~~~~~~--------------------------~v~~Ll~~~~~~~~~--~~~t~l~~A~~~  646 (821)
                      |+++...|.+|..|+..|......+                          =++..+..|...+..  .|.|+||.|+.+
T Consensus       129 gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~  208 (527)
T KOG0505|consen  129 GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAAN  208 (527)
T ss_pred             hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhh
Confidence            9998888888887765442211111                          123334456555443  388999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       647 ~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                      |..++.++|+++|.+++.+|.+|+||||.|+..|..+++++|+++|++.+..+..|.||+++|...-- ...++..
T Consensus       209 Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~dee~~-~l~eLe~  283 (527)
T KOG0505|consen  209 GYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADEEEL-YLLELEL  283 (527)
T ss_pred             hHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhhhhH-HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999886333 4344443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.7e-21  Score=184.54  Aligned_cols=148  Identities=18%  Similarity=0.187  Sum_probs=96.0

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccc
Q 003425          561 AGADPNRTDYDGRSPLHLAASRGYE----EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA  636 (821)
Q Consensus       561 ~g~~~n~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~  636 (821)
                      +|+|++..+.++.++||.||+.|+.    +++++|++.|++++.+|..|+||||+|+..|+.+.+               
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~---------------   73 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAV---------------   73 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHH---------------
Confidence            4566777777788888888888887    556667777888888888888888888887765542               


Q ss_pred             cchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCC
Q 003425          637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       637 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~  714 (821)
                                   +++++|+++|+++|.+| ..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++
T Consensus        74 -------------~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~  140 (166)
T PHA02743         74 -------------MKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD  140 (166)
T ss_pred             -------------HHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC
Confidence                         12344444555555555 356666666666666666666663 566666666666666666666666


Q ss_pred             HHHHHHHHhccccccccCCCCC
Q 003425          715 KNLIKLLEDAKSTQLLEFPHGF  736 (821)
Q Consensus       715 ~~i~~~Ll~~~a~~~~~~~~~~  736 (821)
                      .+++++|+++|++...++..|.
T Consensus       141 ~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        141 RRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHHHHcCCCCCCcccCCc
Confidence            6666666666666555554443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.2e-21  Score=209.04  Aligned_cols=217  Identities=23%  Similarity=0.282  Sum_probs=185.3

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR  582 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~  582 (821)
                      +.-..++.+..+....+....++.+..+.+.+  ..|.+|||+|++.|+.++++.++.++..+|..+..|.||||.||+.
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d--~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh  125 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCD--TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH  125 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhh--ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh
Confidence            34455666666665555556666666666654  8899999999999999999999999988999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC----------CcccccchhhHHHhcCCHHHH
Q 003425          583 GYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL----------NVEEAGSFLCTAVARGDSDLL  652 (821)
Q Consensus       583 g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~----------~~~~~~t~l~~A~~~~~~~~v  652 (821)
                      |+.+++.+|+++|+|+-.+|+.+.|+|..|++.|..++++.|++.....          ..-.+.+|+|.|+++|+.+++
T Consensus       126 gh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~  205 (854)
T KOG0507|consen  126 GHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECM  205 (854)
T ss_pred             cchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHH
Confidence            9999999999999999999999999999999999999999999873221          112356789999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHH
Q 003425          653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG---NKNLIKLLE  722 (821)
Q Consensus       653 ~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~---~~~i~~~Ll  722 (821)
                      +.|++.|.++|....+| |+||.|+..|..++|++|++.|.+...+|.+|+|+|++-...-   ..+++-.+.
T Consensus       206 ~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  206 QALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             HHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence            99999999999887766 9999999999999999999999999999999999999876543   334444443

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.2e-20  Score=179.87  Aligned_cols=137  Identities=18%  Similarity=0.240  Sum_probs=117.2

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccc
Q 003425          565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQ------KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS  638 (821)
Q Consensus       565 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t  638 (821)
                      ++.+|..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+.+++                 
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-----------------   76 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-----------------   76 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-----------------
Confidence            34567889999999999999999998854      3678888999999999999988775433                 


Q ss_pred             hhhHHHhcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHH
Q 003425          639 FLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGNKN  716 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~  716 (821)
                                .+++++|+++|+++|.++. .|+||||+|+..++.+++++|++ .|++++..|..|+||||+|+..++.+
T Consensus        77 ----------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~  146 (169)
T PHA02741         77 ----------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA  146 (169)
T ss_pred             ----------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence                      2556777778888888885 89999999999999999999997 59999999999999999999999999


Q ss_pred             HHHHHHhccccc
Q 003425          717 LIKLLEDAKSTQ  728 (821)
Q Consensus       717 i~~~Ll~~~a~~  728 (821)
                      ++++|++.++..
T Consensus       147 iv~~L~~~~~~~  158 (169)
T PHA02741        147 MMQILREIVATS  158 (169)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.1e-21  Score=189.90  Aligned_cols=162  Identities=23%  Similarity=0.350  Sum_probs=147.6

Q ss_pred             cccccchhhhHhhhHHHHhhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCCCC
Q 003425          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASR-----GYEEIMTFLIQKGVDINLKD  602 (821)
Q Consensus       529 ~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~  602 (821)
                      ...+|-.|.+|+|+||+|+.+++.++|+.||+.| +|+|.++.-|.||+++|+..     .+.++|..|...| |+|.+-
T Consensus       258 ~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKA  336 (452)
T KOG0514|consen  258 EYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKA  336 (452)
T ss_pred             HHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhh
Confidence            4457788999999999999999999999999997 68999999999999999864     4678999998886 788775


Q ss_pred             -CCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Q 003425          603 -NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN-GIDPNTRDYDLRTPLHVAAS  678 (821)
Q Consensus       603 -~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~T~Lh~A~~  678 (821)
                       ..|+|+|++|+.+|+.++|+.||..|+|+|..  +|.|+|++||.+|+.+++++||.. ++|+...|.+|.|+|.+|..
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence             57999999999999999999999999999976  589999999999999999999986 78999999999999999999


Q ss_pred             cCcHHHHHHHHHc
Q 003425          679 EGLYLMAKLLVEA  691 (821)
Q Consensus       679 ~g~~~~v~~Ll~~  691 (821)
                      .|+.++.-+|..+
T Consensus       417 agh~eIa~mlYa~  429 (452)
T KOG0514|consen  417 AGHREIAVMLYAH  429 (452)
T ss_pred             cCchHHHHHHHHH
Confidence            9999999888765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=1.1e-20  Score=179.05  Aligned_cols=123  Identities=17%  Similarity=0.012  Sum_probs=99.3

Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 003425          594 KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL  673 (821)
Q Consensus       594 ~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~L  673 (821)
                      +|++++..+..+.+++|.||+.|+.+.+.                           +++++|.+.|++++.+|..|+|||
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~---------------------------~~~~~l~~~g~~~~~~d~~g~t~L   61 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELM---------------------------EVAPFISGDGHLLHRYDHHGRQCT   61 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHH---------------------------HHHHHHhhcchhhhccCCCCCcHH
Confidence            34555556666666666666665553332                           345567778888899999999999


Q ss_pred             HHHHHcCcHH---HHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHh-ccccccccCCCCCCcccccc
Q 003425          674 HVAASEGLYL---MAKLLVEAGASVFPKD-RWGNTPLDEGRMCGNKNLIKLLED-AKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       674 h~A~~~g~~~---~v~~Ll~~ga~~~~~d-~~g~t~l~~A~~~~~~~i~~~Ll~-~~a~~~~~~~~~~~~~~~~~  743 (821)
                      |+|+..|+.+   ++++|+++|+++|.+| ..|+||||+|+..|+.+++++|++ .|++....+..|.++.+...
T Consensus        62 h~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~  136 (166)
T PHA02743         62 HMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY  136 (166)
T ss_pred             HHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH
Confidence            9999998765   4899999999999998 589999999999999999999995 89999999999999977543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=6.2e-20  Score=186.79  Aligned_cols=153  Identities=24%  Similarity=0.241  Sum_probs=115.3

Q ss_pred             CCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc---cccc
Q 003425          567 RTDYDGRS-PLHLAASRGYEEIMTFLIQKGVDINLKD----NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE---EAGS  638 (821)
Q Consensus       567 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~t  638 (821)
                      .+|..|.| +||.|+..|+.+++++|+++|+++|.++    ..|.||||+|+..++.+++++|+++|++++..   .|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            44555554 3455556677777777777777777653    46777777777777777777777777777753   3667


Q ss_pred             hhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 003425          639 FLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                      |||.|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++..+.  |..   .+..+.+|.+++   ++.+++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHH
Confidence            777777788888888888888999999999999999999999988876664  332   456678888875   478999


Q ss_pred             HHHHhcccc
Q 003425          719 KLLEDAKST  727 (821)
Q Consensus       719 ~~Ll~~~a~  727 (821)
                      ++|+.++.-
T Consensus       179 ~~Lish~vl  187 (300)
T PHA02884        179 KILVSHFIL  187 (300)
T ss_pred             HHHHHHHHH
Confidence            999999873

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.5e-19  Score=183.95  Aligned_cols=147  Identities=19%  Similarity=0.197  Sum_probs=129.5

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHH
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTD----YDGRSPLHLAASRGYEEIMTFLIQKGVDINLK-DNFGNTPLLEAI  613 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~tpL~~A~  613 (821)
                      ..++||.|+..|+.++++.|+++|+|+|.++    ..|.||||+|+..|+.+++++|+++|+|+|.+ +..|.||||.|+
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            3467888888999999999999999999874    58999999999999999999999999999986 467999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ..|+.+++++|+++|++++..  +|.||+|.|+..++.+++..+.  |..   .+..+.+|++++   ++.+++++|+++
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish  184 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSH  184 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHH
Confidence            999999999999999999875  4889999999999998876664  322   456678899875   478999999999


Q ss_pred             CC
Q 003425          692 GA  693 (821)
Q Consensus       692 ga  693 (821)
                      ++
T Consensus       185 ~v  186 (300)
T PHA02884        185 FI  186 (300)
T ss_pred             HH
Confidence            87

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.3e-19  Score=172.73  Aligned_cols=134  Identities=28%  Similarity=0.297  Sum_probs=114.6

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCCC
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIR------AGADPNRTDYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLK  601 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~------~g~~~n~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~  601 (821)
                      ++..+..|.||||.||..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+++|+++|.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            45667889999999999999999999864      368899999999999999999999    58999999999999999


Q ss_pred             CC-CCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 003425          602 DN-FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG  680 (821)
Q Consensus       602 ~~-~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g  680 (821)
                      +. .|.||||+|+..++.+++++|++.                              .|++++..|..|.||||.|+..|
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~~~~  143 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAIDNE  143 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHHHCC
Confidence            85 899999999988888777777652                              24566777888899999999999


Q ss_pred             cHHHHHHHHHcCCCC
Q 003425          681 LYLMAKLLVEAGASV  695 (821)
Q Consensus       681 ~~~~v~~Ll~~ga~~  695 (821)
                      +.+++++|++.++..
T Consensus       144 ~~~iv~~L~~~~~~~  158 (169)
T PHA02741        144 DVAMMQILREIVATS  158 (169)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999988876653

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=9.4e-20  Score=171.34  Aligned_cols=94  Identities=18%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             ccchhhHHHhcCCH---HHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHH
Q 003425          636 AGSFLCTAVARGDS---DLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGR  710 (821)
Q Consensus       636 ~~t~l~~A~~~~~~---~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~  710 (821)
                      |.||||+|+..|+.   +++++|+++|++++.+| ..|+||||+|+..|+.+++++|+. .|++++.+|..|.||||+|+
T Consensus        55 g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~  134 (154)
T PHA02736         55 GKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC  134 (154)
T ss_pred             CCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH
Confidence            44444444444443   35677888888888887 489999999999999999999997 48999999999999999999


Q ss_pred             HcCCHHHHHHHHhcccccc
Q 003425          711 MCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       711 ~~~~~~i~~~Ll~~~a~~~  729 (821)
                      ..|+.+++++|+++|++..
T Consensus       135 ~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        135 ERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HcCCHHHHHHHHHcCCCCC
Confidence            9999999999999998754

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=2e-19  Score=157.66  Aligned_cols=143  Identities=31%  Similarity=0.312  Sum_probs=115.2

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      .-.+.+|+..+.+..|+.||+..++ +|.+|.+|.||||-|+.+|+.++++.|+..|++++.+...|+||||-||..++.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            3457789999999999999998877 899999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH-HHHHHHHH-cCCCCC
Q 003425          619 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY-LMAKLLVE-AGASVF  696 (821)
Q Consensus       619 ~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~-~~v~~Ll~-~ga~~~  696 (821)
                      +++..|+++|+                               |+|+......||||+||...+. ..+++|+. .+.++.
T Consensus       144 ~va~~LLqhga-------------------------------DVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg  192 (228)
T KOG0512|consen  144 EVAGRLLQHGA-------------------------------DVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG  192 (228)
T ss_pred             hHHHHHHhccC-------------------------------cccccccccchhhHHhhcccchHHHHHHHhhccccChh
Confidence            77777776655                               5555555567777777765543 44555544 467777


Q ss_pred             CCCCCCCCHHHHHHHcC
Q 003425          697 PKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       697 ~~d~~g~t~l~~A~~~~  713 (821)
                      .++..+.||+.+|.+.+
T Consensus       193 ~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  193 LKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhcCccchHHHHHHHhh
Confidence            77777888888777664

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=2.8e-19  Score=168.10  Aligned_cols=96  Identities=21%  Similarity=0.221  Sum_probs=67.7

Q ss_pred             CCCCCCcHHHHHHHcCChH---HHHHHHhcCCCCCcc---cccchhhHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHH
Q 003425          601 KDNFGNTPLLEAIKYGNDG---AASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPL  673 (821)
Q Consensus       601 ~~~~g~tpL~~A~~~~~~~---~v~~Ll~~~~~~~~~---~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~T~L  673 (821)
                      +|..|.||||+|+..|+.+   ++++|++.|++++..   +|.||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            3555555555555555542   355555555555542   24556666666666666666665 4788899999999999


Q ss_pred             HHHHHcCcHHHHHHHHHcCCCCC
Q 003425          674 HVAASEGLYLMAKLLVEAGASVF  696 (821)
Q Consensus       674 h~A~~~g~~~~v~~Ll~~ga~~~  696 (821)
                      |+|+..|+.+++++|+++|++.+
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999998875

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=99.79  E-value=1e-21  Score=192.68  Aligned_cols=227  Identities=19%  Similarity=0.245  Sum_probs=151.5

Q ss_pred             ccccCCcCeEEcCCChh-HHHHHHHHHHHHHHHhhhccee---eeeec----------CCCcCeehhHHHHHHHHHHhHh
Q 003425           56 GFRHFSRNLVFHPDNRW-YRAWTKFILIWAVYSSIFTPVE---FGFFR----------GLSKNLYVLDIVGQIAFLFDIV  121 (821)
Q Consensus        56 ~~~~~~~~~~~~P~s~~-~~~w~~~~~~~~~~~~~~~p~~---~~f~~----------~~~~~~~~~~~~~~~~f~~Di~  121 (821)
                      .+|.+.|+-..+|..+. ..++-.+.-+++..+++.-.+.   -+...          -....++.+|..|.++|..+++
T Consensus       166 s~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EYl  245 (632)
T KOG4390|consen  166 SLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEYL  245 (632)
T ss_pred             hHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHHH
Confidence            45677888889997654 3333333333333333322222   11111          1223478899999999999999


Q ss_pred             heeeEEEEeCCceEEeeccHHHHHHHhhhh-hHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 003425          122 LQFCLAYRDSQTYRLICKRTPIALRYLRSS-FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDI  200 (821)
Q Consensus       122 l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~-f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~  200 (821)
                      +|            +...|.+  .+|+++- -+||+++++|+++-+.......+-..+..+|++|++|+.++.++.+...
T Consensus       246 LR------------L~aAPsR--~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTLRVFRVFRIFKFSRHSQGLR  311 (632)
T KOG4390|consen  246 LR------------LFAAPSR--YRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTLRVFRVFRIFKFSRHSQGLR  311 (632)
T ss_pred             HH------------HHcCchH--HHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEEEeeeeeeeeeecccccccc
Confidence            95            5566777  7899995 4999999999988766655555444444445555555555444444333


Q ss_pred             hhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHH
Q 003425          201 RINYMFS----RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVT  276 (821)
Q Consensus       201 ~~~~~~~----~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t  276 (821)
                      -+.+...    .+.-+++.+...+-++|.++||.+...                        +.+-|.+.+.+||+.++|
T Consensus       312 ILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~------------------------~at~FTsIPaaFWYTIVT  367 (632)
T KOG4390|consen  312 ILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGS------------------------SATKFTSIPAAFWYTIVT  367 (632)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc------------------------cccccccCcHhHhhheee
Confidence            3333333    344444444555667777777765321                        122255788999999999


Q ss_pred             hhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          277 MTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       277 ~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      |||.||||++|.|..+++|..+|.+.|+++.|+++..|.+.++.
T Consensus       368 mTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSR  411 (632)
T KOG4390|consen  368 MTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSR  411 (632)
T ss_pred             eeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhH
Confidence            99999999999999999999999999999999998777666654

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-18  Score=189.27  Aligned_cols=237  Identities=21%  Similarity=0.293  Sum_probs=182.4

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcC---------CCCCCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCC----CCCCC-CC
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAG---------ADPNRTDYDGRSPLHLAASR---GYEEIMTFLIQKGV----DINLK-DN  603 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g---------~~~n~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~----~~~~~-~~  603 (821)
                      .++..|...|.++.+..+++.+         .+++.+...|.|+||.|..+   ++.++++.|++.-.    |+-.. ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5677788888888888887665         46777778899999999874   45688888888522    12111 24


Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhcCCCCCcc---------c----------------ccchhhHHHhcCCHHHHHHHHHC
Q 003425          604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVE---------E----------------AGSFLCTAVARGDSDLLKRVLSN  658 (821)
Q Consensus       604 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~---------~----------------~~t~l~~A~~~~~~~~v~~Ll~~  658 (821)
                      .|+||||.|+.+.+.++|++|++.|||++.+         +                |..||..||..++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999999998762         1                34699999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCC
Q 003425          659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS--VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF  736 (821)
Q Consensus       659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~  736 (821)
                      |+|++.+|..|+|.||..+..-..++..+++++|++  ...+|+.|-|||.+|++-|+.++.+.+++...........  
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp--  340 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP--  340 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc--
Confidence            999999999999999999999999999999999999  8899999999999999999999999999985333332211  


Q ss_pred             CccccccCCCCcccccCCCCCCcc-cc----------ccCceEEEcCccHHHHHHHHHhHcCCC
Q 003425          737 QDTADKRNPTRKCTVFPFHPWDAK-ES----------RRHGIVLWIPQNIKDLIKTAAEQLDFR  789 (821)
Q Consensus       737 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~lp~~~~~l~~~~~~~~~~~  789 (821)
                                ..++.+|+...+.. +.          .....+..+.+-+++|++..+++|+-.
T Consensus       341 ----------vtsslYpL~~iDT~~n~~SvLeivvyg~~~eHl~Ll~~~i~~LL~~KW~~f~k~  394 (782)
T KOG3676|consen  341 ----------VTSSLYPLNSIDTIGNENSVLEIVVYGIKNEHLELLDGPIEELLEDKWKAFGKK  394 (782)
T ss_pred             ----------cccccccchhcccccchhhhhhhhhcCCcHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence                      12222232222222 00          111122345567899999999988764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=3.9e-19  Score=168.28  Aligned_cols=133  Identities=30%  Similarity=0.396  Sum_probs=92.0

Q ss_pred             CCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 003425          597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH  674 (821)
Q Consensus       597 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh  674 (821)
                      |.|.-|..|.+|||+||+.|+..+++.|+..|+.+|..+  ..||||+|+.+|+.++|+.|++..+|+|+.+..|+||||
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplh  105 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLH  105 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchh
Confidence            344444444444444444444444444444444444332  234555555555556666666677788999999999999


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       675 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      +||..|...+++-|+..||.+++.|++|.||++.|.-.-...+.+.-.++|-+++
T Consensus       106 yacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  106 YACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999998876555555666667777665

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.74  E-value=1.8e-18  Score=189.65  Aligned_cols=207  Identities=23%  Similarity=0.264  Sum_probs=170.2

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK-DNFGNTPLLEA  612 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~tpL~~A  612 (821)
                      ..+.+..|+|-.||..|+.|.+++|+.+|+++..+|..|.+||.+|+..||..+|+.|+++.++++.+ |..+.|+|.+|
T Consensus       752 ~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  752 LTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             ccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            44566789999999999999999999999999999999999999999999999999999998888765 56788999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCcHHHHHHH
Q 003425          613 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD--YDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d--~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      |..|+.++|++|+.+|++-..++  ..|||.+|...|..++++.|+.+|+.+|.+.  +.|-.||++|..+|+.+.++.|
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            99999999999999988766554  5688888888888888888888888887654  5678888888888888888888


Q ss_pred             HHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          689 VEAGASVFPK-DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       689 l~~ga~~~~~-d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      ++.|.|+|.. ..+-+|+|-+|+-.|..+++.+||.+.++...+.+.|.+++.
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplm  964 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLM  964 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccc
Confidence            8887777754 245567777777777777777777777777766666666654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.73  E-value=4.6e-18  Score=186.56  Aligned_cols=202  Identities=25%  Similarity=0.234  Sum_probs=188.4

Q ss_pred             ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 003425          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP  608 (821)
Q Consensus       530 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tp  608 (821)
                      .++..+|..|-+||..|+-.||..+|+.|+++.++++.. |..+.|+|.+||..|+.++|++||.+|++-..++-...||
T Consensus       781 aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytP  860 (2131)
T KOG4369|consen  781 ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTP  860 (2131)
T ss_pred             ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCc
Confidence            345678889999999999999999999999999998865 7789999999999999999999999999998899889999


Q ss_pred             HHHHHHcCChHHHHHHHhcCCCCCccc----ccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHH
Q 003425          609 LLEAIKYGNDGAASLLVKEGASLNVEE----AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYL  683 (821)
Q Consensus       609 L~~A~~~~~~~~v~~Ll~~~~~~~~~~----~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~  683 (821)
                      |.+|...|..++++.|+.+|+.+|.+.    |-+||++|..+|+...++.|++.|.|+|..- .+.+|+|-+|+-.|..+
T Consensus       861 lsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~e  940 (2131)
T KOG4369|consen  861 LSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPE  940 (2131)
T ss_pred             hhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcch
Confidence            999999999999999999999999865    5589999999999999999999999999653 46789999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425          684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       684 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~  731 (821)
                      ++.+||.+.+++..+-+.|.|||.-++..|..|+-++|+.+|||.+..
T Consensus       941 vv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  941 VVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             HHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence            999999999999999999999999999999999999999999998754

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1.4e-17  Score=157.78  Aligned_cols=121  Identities=30%  Similarity=0.379  Sum_probs=85.4

Q ss_pred             hhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 003425          523 QLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD  602 (821)
Q Consensus       523 ~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  602 (821)
                      .+-.+.+-+.+..|..|-+|||+||+.|+..+++.|+.+|+.+|..+....||||+|+..||-++|+.|++..+|+|..+
T Consensus        18 lwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn   97 (448)
T KOG0195|consen   18 LWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN   97 (448)
T ss_pred             EEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh
Confidence            33334444556677777778888888888888888887787777777777778888888888888888887777788777


Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCCCCc--ccccchhhHH
Q 003425          603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTA  643 (821)
Q Consensus       603 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~t~l~~A  643 (821)
                      ..|+|||||||..|...+++-|++.|+.++.  +.|.||+..|
T Consensus        98 ehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   98 EHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             ccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            7778888877777777777777666655443  2344554443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.71  E-value=8e-17  Score=141.42  Aligned_cols=145  Identities=23%  Similarity=0.275  Sum_probs=113.6

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ..++-.+............+.... -+++.+|.++.||||-|+.+|++++|+.|+..|++++++...|+||||-||.-++
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~a-n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKA-NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcc-ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            334444444444444555555444 4688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH-HHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCC
Q 003425          585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG-AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN  663 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~-~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~  663 (821)
                      .+++-.||++|+|+|+......||||.||...+.. .+++|+.                              ..+.++-
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~------------------------------dryi~pg  192 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH------------------------------DRYIHPG  192 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh------------------------------ccccChh
Confidence            99999999999999999999999999999876543 3344433                              2344555


Q ss_pred             CCCCCCCcHHHHHHHcC
Q 003425          664 TRDYDLRTPLHVAASEG  680 (821)
Q Consensus       664 ~~d~~g~T~Lh~A~~~g  680 (821)
                      ..+..+.||+.+|-+.+
T Consensus       193 ~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  193 LKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhcCccchHHHHHHHhh
Confidence            56666777777776654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=1.4e-16  Score=134.32  Aligned_cols=89  Identities=40%  Similarity=0.567  Sum_probs=80.9

Q ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHH
Q 003425          543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS  622 (821)
Q Consensus       543 L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~  622 (821)
                      ||.||..|+.++++.|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7899999999999999999988877    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccc
Q 003425          623 LLVKEGASLNVEE  635 (821)
Q Consensus       623 ~Ll~~~~~~~~~~  635 (821)
                      +|+++|++++.++
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999887653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.1e-16  Score=133.34  Aligned_cols=87  Identities=34%  Similarity=0.459  Sum_probs=39.9

Q ss_pred             HHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425          610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      |+|+..|+.+++++|++.+.+++.  |.||+|+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   79 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLL   79 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            344444444444444443333333  333444444444444444444444455555555555555555555555555555


Q ss_pred             HcCCCCCCC
Q 003425          690 EAGASVFPK  698 (821)
Q Consensus       690 ~~ga~~~~~  698 (821)
                      ++|++++.+
T Consensus        80 ~~g~~~~~~   88 (89)
T PF12796_consen   80 EHGADVNIR   88 (89)
T ss_dssp             HTTT-TTSS
T ss_pred             HcCCCCCCc
Confidence            555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.66  E-value=9.1e-16  Score=167.10  Aligned_cols=186  Identities=23%  Similarity=0.255  Sum_probs=154.9

Q ss_pred             ccccccchhhhHhhhHHHHhh---cCCHHHHHHHHHcCCC-CCCC----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003425          528 ITFHISKHEAELALKVNSAAY---HGDLYQLEGLIRAGAD-PNRT----DYDGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (821)
Q Consensus       528 ~~~~~~~~~~~~~~~L~~A~~---~g~~~~v~~Ll~~g~~-~n~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  599 (821)
                      .+-.++.+...|.|.||.|..   .++.++++.|++.-.. +|..    ...|.||||+|+.+.+.++|++|++.|||++
T Consensus       132 ~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~  211 (782)
T KOG3676|consen  132 TDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVH  211 (782)
T ss_pred             hhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchh
Confidence            345566778899999999987   4566899999987433 2322    3579999999999999999999999999987


Q ss_pred             CC---------CC--------------CCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHH
Q 003425          600 LK---------DN--------------FGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKR  654 (821)
Q Consensus       600 ~~---------~~--------------~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~  654 (821)
                      ++         |.              .|..||-.||..++.+++++|+++|+|++..|  |+|.||..+..-..++..+
T Consensus       212 aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  212 ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHH
Confidence            54         11              37789999999999999999999999999875  8999999999999999999


Q ss_pred             HHHCCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHHc-C-------------CCCCCCCC--CCCCHHHHHHHcC
Q 003425          655 VLSNGID--PNTRDYDLRTPLHVAASEGLYLMAKLLVEA-G-------------ASVFPKDR--WGNTPLDEGRMCG  713 (821)
Q Consensus       655 Ll~~g~~--~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g-------------a~~~~~d~--~g~t~l~~A~~~~  713 (821)
                      ++++|++  ...+|..|-|||.+||..|+.++.+.+++. +             -+.+..|.  +-+++|.+.+...
T Consensus       292 ~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg~  368 (782)
T KOG3676|consen  292 ALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYGI  368 (782)
T ss_pred             HHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcCC
Confidence            9999999  889999999999999999999999999987 1             23344443  3456777776553

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.64  E-value=3.7e-15  Score=135.00  Aligned_cols=124  Identities=46%  Similarity=0.648  Sum_probs=93.2

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcC
Q 003425          568 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG  647 (821)
Q Consensus       568 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~  647 (821)
                      .|.+|.||||+|+..|+.+++++|++.|.+.+..+..|.||+|.|+..++.+++++|++                     
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~---------------------   61 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE---------------------   61 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH---------------------
Confidence            34566777777777777777777777776666666666666666666665555555555                     


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       648 ~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                                .|++++..+..|.||+|.|+..++.+++++|+++|.+++..|..|.||+++|...++.+++++|+
T Consensus        62 ----------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          62 ----------KGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----------cCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                      45556667777888999998888888999998888888888888889999998888888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=6.2e-15  Score=133.49  Aligned_cols=124  Identities=45%  Similarity=0.638  Sum_probs=107.2

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK  614 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~  614 (821)
                      .+..|.||||.|+..|+.++++.|++.|.+.+..+..|.||||.|+..++.+++++|++.|++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425          615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       615 ~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      .++.+++++|++++                               .+++..|..|.||++.|+..++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHG-------------------------------ADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcC-------------------------------CCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888777765                               445556666777777777777777777663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=99.58  E-value=4.7e-15  Score=112.53  Aligned_cols=68  Identities=38%  Similarity=0.851  Sum_probs=62.7

Q ss_pred             CcccccCCCCCCccccccCceEEEcCccHHHHHHHHHhHcCCCCCcccccCCCceeeeeeeeecCCeEEEe
Q 003425          747 RKCTVFPFHPWDAKESRRHGIVLWIPQNIKDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLI  817 (821)
Q Consensus       747 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~  817 (821)
                      .++++.++||+..  .+..|+++++|++++||+++++++||+. +++++++||+||+||++|||||+||++
T Consensus         2 ~RVtI~~~~~~~~--~~~~GKvi~lP~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~IRDgD~L~~~   69 (69)
T PF11834_consen    2 KRVTIFPNHPPEK--GRRAGKVIWLPDSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVIRDGDHLYLV   69 (69)
T ss_pred             cEEEEecCCCCcc--cCcCCEEEEcCccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEEEcCCEEEEC
Confidence            5688888999887  5567999999999999999999999996 799999999999999999999999985

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.56  E-value=2.5e-14  Score=145.08  Aligned_cols=126  Identities=19%  Similarity=0.254  Sum_probs=118.6

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccc
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS  466 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~  466 (821)
                      ++++..++|..++++.+..+....+.+.|++|++|+++|+.++.+|+|.+|.++++... +|++.++..+.+|++||+.+
T Consensus         7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~~   85 (236)
T PRK09392          7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILAA   85 (236)
T ss_pred             HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhHH
Confidence            57889999999999999999999999999999999999999999999999999999754 66778899999999999999


Q ss_pred             ccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          467 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++.+.++.++++|.++|+++.|++++|.+++.++|.+...+++.+..
T Consensus        86 ~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~  132 (236)
T PRK09392         86 VVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG  132 (236)
T ss_pred             HhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988877764

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.55  E-value=2.2e-14  Score=141.91  Aligned_cols=187  Identities=24%  Similarity=0.309  Sum_probs=129.9

Q ss_pred             hhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhc--Cch---hHHHHHHH
Q 003425          107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKAS--GRK---EAVRYLLW  180 (821)
Q Consensus       107 ~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~--~~~---~~~~~l~l  180 (821)
                      ++|.+++++|++|+++++++....             +++|+++ |.++|+++++|..+.....  +..   ..++.+++
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL   67 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence            478999999999999998655432             4789998 5689999999985544322  111   24556666


Q ss_pred             HHHHHHHHHHHHHHhhhhhH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccc
Q 003425          181 IRLYRVRKVSQFFHKMEKDI-RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE  259 (821)
Q Consensus       181 lrl~rl~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  259 (821)
                      +|++|+.|+.+..+.+.... .......++.+.+..++++.|++||+++.+............        .........
T Consensus        68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~--------~~~~~~~~~  139 (200)
T PF00520_consen   68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT--------WDSENDIYG  139 (200)
T ss_dssp             HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------------SS----SST
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccc--------ccccccccc
Confidence            66666666666555554432 234556678899999999999999999988764332211101        001112233


Q ss_pred             cchHHHHHHHHHHHHHHhhccccCccccC-----ChhHHHHH-HHHHHHHHHHHHHHHHHH
Q 003425          260 IGFWKSYITSMYASVVTMTTVGYGDVHAV-----NLREMVFI-MIYVSFDMILGAYLIGNM  314 (821)
Q Consensus       260 ~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~-----t~~e~~~~-~~~~i~g~~~~a~~i~~i  314 (821)
                      .+.+++|..|+||++.++||.||||..|.     +..+.++. ++..+.+++++++++|.|
T Consensus       140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            45577899999999999999999999997     88899988 666777778889998875

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=1.5e-14  Score=113.16  Aligned_cols=98  Identities=26%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             HHHHHHcCChHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 003425          609 LLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL  687 (821)
Q Consensus       609 L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~  687 (821)
                      ..+++++|..+-|+-.+..|.++|.. .|++|||+|+..|..+++++|+..|++++.+|+.|-|||..|+..||.+||++
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVkl   85 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKL   85 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHH
Confidence            34445555555555444444444332 34444444444444444444444444444444444444444444444444444


Q ss_pred             HHHcCCCCCCCCCCCCCHH
Q 003425          688 LVEAGASVFPKDRWGNTPL  706 (821)
Q Consensus       688 Ll~~ga~~~~~d~~g~t~l  706 (821)
                      |+++|||-..+..+|.+.+
T Consensus        86 LL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   86 LLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HHHcCcccceeCCCchhHH
Confidence            4444444444444444433

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=2.9e-14  Score=111.62  Aligned_cols=101  Identities=29%  Similarity=0.419  Sum_probs=92.9

Q ss_pred             hhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 003425          639 FLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                      -..+++++|..+-|+.....|.++|..- .|+||||+|+..|..+++++|+..||+++.+|++|-|||--|+..||.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678899999999999999998888654 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccccCCCCCCccc
Q 003425          719 KLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       719 ~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      ++|++.||+.....++|.+...
T Consensus        84 klLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHh
Confidence            9999999999999998866543

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.53  E-value=7.6e-14  Score=124.11  Aligned_cols=114  Identities=32%  Similarity=0.550  Sum_probs=108.1

Q ss_pred             cccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc
Q 003425          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (821)
Q Consensus       394 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~  473 (821)
                      +|..++++.+..+...++...+.+|++|+.+|+..+.+|+|.+|.++++...++|++..+..+.+|++||+..++.+.++
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR   80 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence            47889999999999999999999999999999999999999999999999888899999999999999999998888999


Q ss_pred             ceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      ..+++|.++|+++.|++++|.+++.++|.+...+
T Consensus        81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~  114 (115)
T cd00038          81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL  114 (115)
T ss_pred             CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence            9999999999999999999999999999887654

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=2.3e-13  Score=137.86  Aligned_cols=135  Identities=41%  Similarity=0.558  Sum_probs=116.4

Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHH
Q 003425          565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAV  644 (821)
Q Consensus       565 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~  644 (821)
                      .+..+..+.+++|.|+..+..+++++++..|++++.++..|.||||+|+..++.                          
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------------  119 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------------  119 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------------
Confidence            345567788999999999999999999999999999999999999999998883                          


Q ss_pred             hcCCHHHHHHHHHCCC---CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          645 ARGDSDLLKRVLSNGI---DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       645 ~~~~~~~v~~Ll~~g~---~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      ..++.++++.|++.|+   +.+.+|..|+||||+|+..|+.+++++|++.|++++.++..|.||++.|+..++.++++.+
T Consensus       120 ~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l  199 (235)
T COG0666         120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL  199 (235)
T ss_pred             ccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHH
Confidence            2334455555555555   5566799999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhcc
Q 003425          722 EDAK  725 (821)
Q Consensus       722 l~~~  725 (821)
                      ++.+
T Consensus       200 ~~~~  203 (235)
T COG0666         200 LDKG  203 (235)
T ss_pred             HhcC
Confidence            9987

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.49  E-value=2.5e-13  Score=135.36  Aligned_cols=118  Identities=16%  Similarity=0.265  Sum_probs=110.4

Q ss_pred             cCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-Ccc
Q 003425          396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP  474 (821)
Q Consensus       396 ~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~-~~~  474 (821)
                      +.++++.++.++..++.+.|++|++|+.+|++++.+|+|.+|.++++..+.+|++..+..+.+|++||+.+++.+. +++
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~   85 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS   85 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence            5689999999999999999999999999999999999999999999988889999999999999999999988764 688


Q ss_pred             eEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       475 ~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++++|.++|.++.|++++|.++++.+|++...+++.+..
T Consensus        86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  124 (211)
T PRK11753         86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR  124 (211)
T ss_pred             EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888776654

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.47  E-value=1.5e-13  Score=116.45  Aligned_cols=91  Identities=30%  Similarity=0.576  Sum_probs=86.7

Q ss_pred             cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechH
Q 003425          412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ  491 (821)
Q Consensus       412 ~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~  491 (821)
                      ++.|++|++|+++|+.++.+|||.+|.++++..+.+++..++..+.+|++||+.+++.+.++.++++|.++|+++.|+++
T Consensus         1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~   80 (91)
T PF00027_consen    1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE   80 (91)
T ss_dssp             -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred             CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence            36799999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhh
Q 003425          492 SFTNIIDIYFC  502 (821)
Q Consensus       492 ~f~~~l~~~p~  502 (821)
                      +|.++++++|+
T Consensus        81 ~~~~~~~~~p~   91 (91)
T PF00027_consen   81 DFLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHHSHH
T ss_pred             HHHHHHHhCcC
Confidence            99999999985

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.45  E-value=2.7e-13  Score=136.14  Aligned_cols=112  Identities=18%  Similarity=0.225  Sum_probs=105.0

Q ss_pred             HHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEec
Q 003425          402 FINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE  481 (821)
Q Consensus       402 ~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~  481 (821)
                      +..++....+.+.|++|++|+.+|++++.+|+|.+|.|+++..+++|++.++..+.+|++||+.+++.+.+++++++|.+
T Consensus        23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~  102 (226)
T PRK10402         23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIE  102 (226)
T ss_pred             CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEec
Confidence            33468888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       482 ~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +|+++.+++++|.+++..+|.+...++..+..
T Consensus       103 ~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~  134 (226)
T PRK10402        103 ECWCLALPMKDCRPLLLNDALFLRKLCKFLSH  134 (226)
T ss_pred             cEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999988877764

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.45  E-value=5.1e-13  Score=135.27  Aligned_cols=131  Identities=39%  Similarity=0.528  Sum_probs=109.5

Q ss_pred             cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCC
Q 003425          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGV---DINLKD  602 (821)
Q Consensus       531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~  602 (821)
                      .....+..+.+++|.|+..++.+.++.++..|++++.++..|.||||+|+..++     .++++.|++.|+   +.+.+|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            344556668899999999999999999999999999999999999999999999     999999999999   666669


Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425          603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY  682 (821)
Q Consensus       603 ~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~  682 (821)
                      ..|.||||+|+..|+.+++++|++.|++                               ++..+..|.|+++.|+..++.
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~-------------------------------~~~~~~~g~t~l~~a~~~~~~  193 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGAD-------------------------------PNSRNSYGVTALDPAAKNGRI  193 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCC-------------------------------CcccccCCCcchhhhcccchH
Confidence            9999999999998888888888776554                               444566677777777777777


Q ss_pred             HHHHHHHHcC
Q 003425          683 LMAKLLVEAG  692 (821)
Q Consensus       683 ~~v~~Ll~~g  692 (821)
                      ++++.+++.+
T Consensus       194 ~~~~~l~~~~  203 (235)
T COG0666         194 ELVKLLLDKG  203 (235)
T ss_pred             HHHHHHHhcC
Confidence            7777776654

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.44  E-value=1.2e-12  Score=117.12  Aligned_cols=116  Identities=28%  Similarity=0.421  Sum_probs=107.3

Q ss_pred             cccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccc--ccC
Q 003425          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL--CNI  471 (821)
Q Consensus       394 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~--~~~  471 (821)
                      +|.+++++.+..++..++.+.+++|++|+++|+.++.+|+|.+|.++++..+.+|++..+..+.+|++||+..++  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR   80 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence            478899999999999999999999999999999999999999999999988888999999999999999999988  456


Q ss_pred             CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHH
Q 003425          472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (821)
Q Consensus       472 ~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~  509 (821)
                      ++..++++.++|.++.++.+++.+.+..++.+...++.
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  118 (120)
T smart00100       81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL  118 (120)
T ss_pred             ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence            78899999999999999999999999999887766554

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.3e-13  Score=103.61  Aligned_cols=55  Identities=40%  Similarity=0.500  Sum_probs=33.6

Q ss_pred             HHHCC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 003425          655 VLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG  709 (821)
Q Consensus       655 Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  709 (821)
                      |+++| ++++.+|..|.||||+||..|+.+++++|++.|+|++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999997

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.40  E-value=2.1e-12  Score=129.25  Aligned_cols=125  Identities=22%  Similarity=0.360  Sum_probs=114.2

Q ss_pred             cccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccc
Q 003425          390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC  469 (821)
Q Consensus       390 ~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~  469 (821)
                      ...+.|...+.+....+....+...+++|++|+.+|++++.+|+|.+|.++++...++|++.++..+.+|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            34566767788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +.|++++++|.++|+++.++++.|.+++..+|.+...++..+..+
T Consensus        83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~  127 (214)
T COG0664          83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARR  127 (214)
T ss_pred             CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence            889999999999999999999999998888888888888777654

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.40  E-value=2.3e-12  Score=130.64  Aligned_cols=125  Identities=14%  Similarity=0.160  Sum_probs=111.2

Q ss_pred             ccccccccCCCHHHHHHHHHhccc-ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccc
Q 003425          389 IEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI  467 (821)
Q Consensus       389 l~~~~~f~~~~~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~  467 (821)
                      +.+.+.|..++++.+..|...... ..|++|++|+.+||.++++|+|.+|.++++..+++|++.++.++.+|++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            455556667999999999988864 6899999999999999999999999999999999999999999999999998766


Q ss_pred             cccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       468 ~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +. .+++.+++|.++|+++.||++.|.+++..+|++...++..+..+
T Consensus        95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~~  140 (235)
T PRK11161         95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSGE  140 (235)
T ss_pred             cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            54 45567899999999999999999999999999999988877653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.37  E-value=5e-13  Score=100.43  Aligned_cols=55  Identities=47%  Similarity=0.662  Sum_probs=33.3

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425          558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA  612 (821)
Q Consensus       558 Ll~~g-~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A  612 (821)
                      |+++| +++|.+|..|.||||+||..|+.+++++|++.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57778 88999999999999999999999999999999999999999999999987

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.37  E-value=1e-12  Score=130.13  Aligned_cols=126  Identities=27%  Similarity=0.409  Sum_probs=114.8

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .+.+++.-+|.+++++.+.++...|.++.++.|+.|+.+|+.++.+|+|.+|++.+|.   +  ...+..+.+|.+|||+
T Consensus       121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv---~--~~~v~~~~~g~sFGEl  195 (368)
T KOG1113|consen  121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV---N--GTYVTTYSPGGSFGEL  195 (368)
T ss_pred             HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE---C--CeEEeeeCCCCchhhh
Confidence            3566777899999999999999999999999999999999999999999999999998   2  3467889999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcCCc
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE  516 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~~~  516 (821)
                      +++.+.||.+|+.|.+++.+|.+++..|..++-.+..-.++|....+....
T Consensus       196 ALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~p  246 (368)
T KOG1113|consen  196 ALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVP  246 (368)
T ss_pred             HhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcch
Confidence            999999999999999999999999999999998888888888887776544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=1.7e-12  Score=133.42  Aligned_cols=115  Identities=27%  Similarity=0.343  Sum_probs=95.3

Q ss_pred             hHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHH
Q 003425          542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA  621 (821)
Q Consensus       542 ~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v  621 (821)
                      .|..|+..|.+++|+..+..-.|+...+.+|-||||-|+..||.+||++|++.|+|+|..|.+|+||||+|+.+++..++
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            36679999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCc---ccccchhhHH--HhcCCHHHHHHHH
Q 003425          622 SLLVKEGASLNV---EEAGSFLCTA--VARGDSDLLKRVL  656 (821)
Q Consensus       622 ~~Ll~~~~~~~~---~~~~t~l~~A--~~~~~~~~v~~Ll  656 (821)
                      +.|+++|+.+-.   .|+.|+..-+  -..|...|.++|.
T Consensus       633 kqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  633 KQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999987644   2344443221  1234444555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.36  E-value=1.5e-12  Score=97.38  Aligned_cols=54  Identities=43%  Similarity=0.564  Sum_probs=42.2

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          669 LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       669 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                      |.||||+||+.|+.+++++|+++|+|+|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678899999988999999998888888888888899999999999888888885

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.35  E-value=4.4e-12  Score=146.58  Aligned_cols=103  Identities=33%  Similarity=0.478  Sum_probs=92.0

Q ss_pred             chhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 003425          638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL  717 (821)
Q Consensus       638 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i  717 (821)
                      ..|+.|+..|+.+.++.|+++|+++|.+|..|+||||+||..|+.+++++|+++|+|++.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc-------cccccccCCCCCCccc
Q 003425          718 IKLLEDA-------KSTQLLEFPHGFQDTA  740 (821)
Q Consensus       718 ~~~Ll~~-------~a~~~~~~~~~~~~~~  740 (821)
                      +++|+++       |++.......|..+..
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            9999998       7777766666654433

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.34  E-value=8.7e-12  Score=101.61  Aligned_cols=55  Identities=33%  Similarity=0.617  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~  319 (821)
                      +|.+|+||+++|+|||||||+.|.++.+|+++++.+++|+.++++.++.+++.+.
T Consensus        24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999999999999999999999999999988764

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=8.2e-12  Score=119.11  Aligned_cols=59  Identities=25%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  599 (821)
                      .+|..|+..|+.+....|++.--++|..|.+|.|+|..|+..|+.+++++|++.|+|+|
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN   72 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN   72 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC
Confidence            44555555555555555555433455555555555555555555555555555555554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=3.4e-12  Score=95.50  Aligned_cols=54  Identities=46%  Similarity=0.687  Sum_probs=30.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHH
Q 003425          572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV  625 (821)
Q Consensus       572 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  625 (821)
                      |+||||+||..|+.+++++|+++|+++|.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666654

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.31  E-value=8.2e-12  Score=144.31  Aligned_cols=102  Identities=33%  Similarity=0.481  Sum_probs=92.3

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      ...|+.|+..|+.+.++.|++.|+++|.+|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-------CCCCCcc--cccchhh
Q 003425          620 AASLLVKE-------GASLNVE--EAGSFLC  641 (821)
Q Consensus       620 ~v~~Ll~~-------~~~~~~~--~~~t~l~  641 (821)
                      ++++|+++       |++.+..  +|.+++.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence            99999998       6665543  3444433

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=4.4e-12  Score=130.43  Aligned_cols=95  Identities=31%  Similarity=0.405  Sum_probs=87.5

Q ss_pred             hhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 003425          640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK  719 (821)
Q Consensus       640 l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~  719 (821)
                      |.-|+..|..++|+..+..=-|+...|..|-||||-|+..||+++|++|++.|+|+|..|.+||||||+|+.+++..+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            55688999999999999888888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccccccCCC
Q 003425          720 LLEDAKSTQLLEFPH  734 (821)
Q Consensus       720 ~Ll~~~a~~~~~~~~  734 (821)
                      .|++.|+......-.
T Consensus       634 qLVe~GaavfAsTlS  648 (752)
T KOG0515|consen  634 QLVESGAAVFASTLS  648 (752)
T ss_pred             HHHhccceEEeeecc
Confidence            999999988765443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.5e-11  Score=117.42  Aligned_cols=115  Identities=22%  Similarity=0.337  Sum_probs=97.3

Q ss_pred             HhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHH
Q 003425          511 LLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMT  589 (821)
Q Consensus       511 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~g~~~~v~  589 (821)
                      .+...+......++..  .-+++..|+.|.++|..|+..|+.++++.|++.|+|+|.. +..+.||||.||.+|+.++.+
T Consensus        19 ~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcr   96 (396)
T KOG1710|consen   19 AIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCR   96 (396)
T ss_pred             HHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHH
Confidence            3333444444444433  2346788999999999999999999999999999999864 678999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc
Q 003425          590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE  627 (821)
Q Consensus       590 ~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  627 (821)
                      +|++.|+.+...|.-|+|+-..|+.-|+.++|..+-++
T Consensus        97 llldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   97 LLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999999999999999999999876543

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.30  E-value=2.8e-12  Score=132.45  Aligned_cols=123  Identities=22%  Similarity=0.373  Sum_probs=112.1

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC-CccceEEEeCCCCc
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSS  461 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~-g~~~~i~~l~~G~~  461 (821)
                      +.+.++|+++|+|+++|++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+.+.++. +.+..+..+..||+
T Consensus       268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~  347 (732)
T KOG0614|consen  268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY  347 (732)
T ss_pred             HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence            34678899999999999999999999999999999999999999999999999999999987665 66778899999999


Q ss_pred             cccccccccCCcceEEEEecc-eEEEEechHhHHHHHHHhhhchH
Q 003425          462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFCDGR  505 (821)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~-~~~~~i~~~~f~~~l~~~p~~~~  505 (821)
                      |||.+++....|++++.|..+ ++++.|+++.|.+++....++.+
T Consensus       348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~e  392 (732)
T KOG0614|consen  348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKE  392 (732)
T ss_pred             hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhhh
Confidence            999999999999999999988 89999999999998876655543

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.30  E-value=1e-12  Score=135.96  Aligned_cols=181  Identities=22%  Similarity=0.307  Sum_probs=119.8

Q ss_pred             eehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHH
Q 003425          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLY  184 (821)
Q Consensus       105 ~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~  184 (821)
                      ..-+|+...++|++-+++||..+-.           +.  +-++.-+-++|++.+-|..+.+....+.-.+|+||.+|+.
T Consensus       164 tqqidlafnifflvyffirfiaasd-----------kl--wf~lemys~vdfftippsfvsiyl~r~wlglrflralrlm  230 (1103)
T KOG1420|consen  164 TQQIDLAFNIFFLVYFFIRFIAASD-----------KL--WFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLM  230 (1103)
T ss_pred             HHHhhhHhhHHHHHHHHHHHhhccc-----------ce--eeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhc
Confidence            3568999999999999998854421           11  1112223377888777765544444444456666666666


Q ss_pred             HHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHH
Q 003425          185 RVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWK  264 (821)
Q Consensus       185 rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  264 (821)
                      .+..+.+++..++..     ...++..++.+++-...-.|.+..+++..      +..|-.-.+            .-.-
T Consensus       231 tvpdilqylnilkts-----ssirl~qlvsifisvwltaag~ihllens------gdp~~~f~n------------~hrl  287 (1103)
T KOG1420|consen  231 TVPDILQYLNILKTS-----SSIRLVQLVSIFISVWLTAAGFIHLLENS------GDPWENFQN------------NHRL  287 (1103)
T ss_pred             cHHHHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhhcceeehhhcC------CChhHhccC------------cccc
Confidence            666666666554321     22245555554444444444444444432      223321110            1123


Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      .|..|.|+.++||+||||||+.-.|..+++|.+++++.|..+||--+..|..++.+.
T Consensus       288 tyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr  344 (1103)
T KOG1420|consen  288 TYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR  344 (1103)
T ss_pred             hhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc
Confidence            699999999999999999999999999999999999999999999999999998763

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.28  E-value=6e-11  Score=124.91  Aligned_cols=125  Identities=19%  Similarity=0.277  Sum_probs=114.4

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .+++.++|.|..++++.+.+|...+....|.+||+|+..|.+..++|+|.+|.|+++.  ++|.  ++..+..||.||-.
T Consensus         6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~~   81 (610)
T COG2905           6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGFS   81 (610)
T ss_pred             HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccch
Confidence            4688999999999999999999999999999999999999999999999999999886  2333  78999999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      ++++..+....+.|.+++.+|.||++.|.++++++|+++..+......+
T Consensus        82 ~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR  130 (610)
T COG2905          82 SLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKR  130 (610)
T ss_pred             hhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            9999888888899999999999999999999999999999988665553

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.26  E-value=2.9e-11  Score=118.63  Aligned_cols=96  Identities=23%  Similarity=0.294  Sum_probs=89.7

Q ss_pred             cCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc--ceEEEEecceEEEEechHhHHH
Q 003425          418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVCELCRLLRIDKQSFTN  495 (821)
Q Consensus       418 ~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~--~~~~~a~~~~~~~~i~~~~f~~  495 (821)
                      |+.|+.+|++.+.+|+|.+|.|+++...++|++.++.++.+|++||+.+++.+.+.  .++++|.++|+++.+|+++|.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~   80 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK   80 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence            68999999999999999999999999999999999999999999999999987754  5789999999999999999999


Q ss_pred             HHHHhhhchHHHHHHHhc
Q 003425          496 IIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       496 ~l~~~p~~~~~~l~~~l~  513 (821)
                      ++..+|.+...+++.+..
T Consensus        81 l~~~~p~l~~~~~~~l~~   98 (193)
T TIGR03697        81 AIEEDPDLSMLLLQGLSS   98 (193)
T ss_pred             HHHHChHHHHHHHHHHHH
Confidence            999999999999987765

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.24  E-value=3.7e-11  Score=131.51  Aligned_cols=113  Identities=19%  Similarity=0.232  Sum_probs=104.0

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++++++++|++++++.+..++..++.+.|++|++|+++|+..+.+|+|.+|.|+++..+.+| +.++..+++|++||+.
T Consensus         7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~   85 (413)
T PLN02868          7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG   85 (413)
T ss_pred             HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh
Confidence            356788999999999999999999999999999999999999999999999999999888777 6788899999999975


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhh
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF  501 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p  501 (821)
                        +.+.+++++++|.++|+++.|+++.|..+...++
T Consensus        86 --l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~  119 (413)
T PLN02868         86 --LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI  119 (413)
T ss_pred             --hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence              6888999999999999999999999988876655

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.21  E-value=6.1e-11  Score=119.22  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             HHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEE
Q 003425          406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL  485 (821)
Q Consensus       406 l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~  485 (821)
                      +....+...|++|++|+.+||.++++|||.+|.|+++..+++|++.++.++.+|++||+.   .+.+++++++|.++|++
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v  110 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV  110 (230)
T ss_pred             ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence            345567889999999999999999999999999999999999999999999999999964   46778899999999999


Q ss_pred             EEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       486 ~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +.|+.++|.+++..+|++...++..+..
T Consensus       111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~  138 (230)
T PRK09391        111 RLIKRRSLEQAAATDVDVARALLSLTAG  138 (230)
T ss_pred             EEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence            9999999999999999999998887765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.16  E-value=2.4e-11  Score=124.10  Aligned_cols=159  Identities=27%  Similarity=0.342  Sum_probs=125.2

Q ss_pred             hhhHHHhcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 003425          639 FLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL  717 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i  717 (821)
                      .||..++.|+.+..-.|+..|+++|..+. .|.||||.|++.|+..-+++|+-+|||++..|.+|.||+.+|...||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            58999999999999999999999998874 69999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccccCC---CCCCccccccCCCCcccccCCCCCCccccccCceEEEcCc-----cHHHHHHHHHhHcCCC
Q 003425          718 IKLLEDAKSTQLLEFP---HGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQ-----NIKDLIKTAAEQLDFR  789 (821)
Q Consensus       718 ~~~Ll~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-----~~~~l~~~~~~~~~~~  789 (821)
                      .+-|++..-+..-+..   -|..+-                       ...|.-..+|+     .+.|+.+.+..++...
T Consensus       216 aeRl~e~~y~vtDR~~f~lcgrKpD-----------------------HkngqhfiIP~~~~sld~se~~k~ar~klq~l  272 (669)
T KOG0818|consen  216 AERLVEIQYELTDRLAFYLCGRKPD-----------------------HKNGQHFIIPQMADSLDLSELAKAAKKKLQSL  272 (669)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc-----------------------ccCCcceeccccccchhHHHHHHHHHHHHhhc
Confidence            9999886543321100   011100                       01111122222     3677888888888774


Q ss_pred             CCcccccCCCceeeeeeeeecCCeEEEeecCC
Q 003425          790 GGDCILSSEGGKILDVDMINDDQKLYLIQETH  821 (821)
Q Consensus       790 ~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~  821 (821)
                      + ..++.+-..++.|..+.|++|.+|.++++|
T Consensus       273 ~-n~~FeeL~mD~yDEvdRRE~eavW~~tqnh  303 (669)
T KOG0818|consen  273 S-NHLFEELAMDVYDEVDRRETDAVWLATQNH  303 (669)
T ss_pred             c-hhhHHHHHHHHHHHHhhhhhhhHHhhhccc
Confidence            4 677777777888888999999999999877

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.13  E-value=2.1e-10  Score=113.32  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=85.6

Q ss_pred             hcccccccccCeEEccCC--ccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEE
Q 003425          409 RLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL  486 (821)
Q Consensus       409 ~~~~~~~~~~e~I~~~g~--~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~  486 (821)
                      .++...|++|++|+.+||  .++.+|+|.+|.|+++..+++|++.++..+.+|++||+.+++ +.+++++++|.++|+++
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~   83 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID   83 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence            356789999999999999  779999999999999999999999999999999999997654 57889999999999999


Q ss_pred             EechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          487 RIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       487 ~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      .|+++.|      +|.+...++..+..
T Consensus        84 ~i~~~~~------~~~~~~~l~~~l~~  104 (202)
T PRK13918         84 VLNPALM------SAEDNLVLTQHLVR  104 (202)
T ss_pred             EEEHHHc------ChhhHHHHHHHHHH
Confidence            9999987      46666666665553

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.13  E-value=4.9e-11  Score=123.44  Aligned_cols=114  Identities=23%  Similarity=0.301  Sum_probs=104.6

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ++..+.+.+..+++++..+.+.+++..|-+..|.+|..|+++||++..+|.+..|++++.+   +  ...++.+++|..|
T Consensus       150 ~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~--g~ll~~m~~gtvF  224 (732)
T KOG0614|consen  150 QLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---E--GKLLGKMGAGTVF  224 (732)
T ss_pred             HHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---C--CeeeeccCCchhh
Confidence            4455677788899999999999999999999999999999999999999999999999987   3  3468999999999


Q ss_pred             ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhh
Q 003425          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF  501 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p  501 (821)
                      ||++++.+.+|+++++|+++|.++.|+|+.|+.++...-
T Consensus       225 GELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg  263 (732)
T KOG0614|consen  225 GELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTG  263 (732)
T ss_pred             hHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987543

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.01  E-value=3.8e-10  Score=112.10  Aligned_cols=118  Identities=21%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             HhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425          382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (821)
Q Consensus       382 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~  461 (821)
                      ..++.++|+++|++..+.......++..+.++.|++|+.|+.+|++++.+|+|.+|+|.+.... +|  ..+ .++.|++
T Consensus       235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dy  310 (368)
T KOG1113|consen  235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDY  310 (368)
T ss_pred             hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhh
Confidence            3567889999999999999999999999999999999999999999999999999999988754 33  445 8999999


Q ss_pred             cccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhc
Q 003425          462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD  503 (821)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~  503 (821)
                      |||.+++.+.||.++|.|.+...|..+++..|+.++....+.
T Consensus       311 fge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~di  352 (368)
T KOG1113|consen  311 FGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDI  352 (368)
T ss_pred             cchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999876543

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.92  E-value=3.2e-08  Score=105.81  Aligned_cols=54  Identities=31%  Similarity=0.461  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~  318 (821)
                      .+.+|+||+++|+|||||||+.|.+..+++++++++++|+.++++.++.+..-+
T Consensus       168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~  221 (393)
T PRK10537        168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV  221 (393)
T ss_pred             CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999886643

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=9.1e-09  Score=105.22  Aligned_cols=96  Identities=34%  Similarity=0.527  Sum_probs=89.9

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLE  611 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~  611 (821)
                      ...+.++..++.+|++.|++..++.+.-.|.|++..|.+.+|+||.||..|+.+++++|++. +.+++.+|..|+|||.-
T Consensus       500 ~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  500 GPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             CcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            35567788899999999999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             HHHcCChHHHHHHHhcC
Q 003425          612 AIKYGNDGAASLLVKEG  628 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~  628 (821)
                      |...+|.+++++|-+.-
T Consensus       580 A~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhcCcHHHHHHHHHHh
Confidence            99999999999998753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=2.5e-08  Score=102.45  Aligned_cols=87  Identities=30%  Similarity=0.334  Sum_probs=81.5

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      .--||..++.|+++..-.|+..|+++|..+ ..|.||||.|++.|+..-+++|+-+|+|++..|..|.||+.+|-..||.
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            345999999999999999999999999876 5699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 003425          619 GAASLLVK  626 (821)
Q Consensus       619 ~~v~~Ll~  626 (821)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            99888876

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.77  E-value=7.7e-09  Score=105.73  Aligned_cols=90  Identities=43%  Similarity=0.646  Sum_probs=85.3

Q ss_pred             cchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCH
Q 003425          637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-GASVFPKDRWGNTPLDEGRMCGNK  715 (821)
Q Consensus       637 ~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~~~~~  715 (821)
                      ..++++|+..|+...++.+.-.|.|++.+|.+.+|+||.||..|+++++++|++. +.|++.+|..|+|||+-|...+|.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            3569999999999999999999999999999999999999999999999999995 899999999999999999999999


Q ss_pred             HHHHHHHhccc
Q 003425          716 NLIKLLEDAKS  726 (821)
Q Consensus       716 ~i~~~Ll~~~a  726 (821)
                      +++++|.++..
T Consensus       587 ~v~k~L~~~~~  597 (622)
T KOG0506|consen  587 EVVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=2e-08  Score=63.83  Aligned_cols=30  Identities=47%  Similarity=0.584  Sum_probs=24.3

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425          668 DLRTPLHVAASEGLYLMAKLLVEAGASVFP  697 (821)
Q Consensus       668 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~  697 (821)
                      +|+||||+||+.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478888888888888888888888888763

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.68  E-value=9.2e-08  Score=100.33  Aligned_cols=90  Identities=31%  Similarity=0.365  Sum_probs=80.5

Q ss_pred             hhHHHhcCCHHHHHHHHHCCCCC----CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 003425          640 LCTAVARGDSDLLKRVLSNGIDP----NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK  715 (821)
Q Consensus       640 l~~A~~~~~~~~v~~Ll~~g~~~----~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~  715 (821)
                      |..|+...+...+-+||.||...    ...+.+|+||||+||+.|++.+.++|+-+|+|+-.+|.+|+|||.||...|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            66688888888899999998543    24466789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccc
Q 003425          716 NLIKLLEDAKSTQL  729 (821)
Q Consensus       716 ~i~~~Ll~~~a~~~  729 (821)
                      +++..|+++|....
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999997654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.62  E-value=8.1e-08  Score=100.09  Aligned_cols=91  Identities=31%  Similarity=0.435  Sum_probs=76.3

Q ss_pred             cccchhhHHHhcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Q 003425          635 EAGSFLCTAVARGDSDLLKRVLSNGID--PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC  712 (821)
Q Consensus       635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~  712 (821)
                      +..+.||+|+..|+-++|++++++|..  ++..|..|.|+||.|+..++..++++|++.||.+-..|..|.||-.-|-+.
T Consensus       898 ~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa  977 (1004)
T KOG0782|consen  898 DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQA  977 (1004)
T ss_pred             chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhc
Confidence            345666666666666666666666643  356678899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhcc
Q 003425          713 GNKNLIKLLEDAK  725 (821)
Q Consensus       713 ~~~~i~~~Ll~~~  725 (821)
                      |..++..+|....
T Consensus       978 ~d~dlaayle~rq  990 (1004)
T KOG0782|consen  978 GDPDLAAYLESRQ  990 (1004)
T ss_pred             CCchHHHHHhhhh
Confidence            9999999997654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.62  E-value=4.6e-08  Score=62.18  Aligned_cols=29  Identities=52%  Similarity=0.962  Sum_probs=20.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 003425          571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  599 (821)
                      +|+||||+||..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777777665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=5.2e-08  Score=64.07  Aligned_cols=33  Identities=42%  Similarity=0.567  Sum_probs=28.1

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC
Q 003425          668 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR  700 (821)
Q Consensus       668 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~  700 (821)
                      +|+||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            488899999999999999999998888888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.59  E-value=2.5e-06  Score=94.72  Aligned_cols=123  Identities=18%  Similarity=0.226  Sum_probs=70.0

Q ss_pred             cCeEEcCCChhHH---------HHHHHHHHHHHHHhhhcceeeeeecCCC--cC-eehhHHHHHHHHHHhHhheeeEEEE
Q 003425           62 RNLVFHPDNRWYR---------AWTKFILIWAVYSSIFTPVEFGFFRGLS--KN-LYVLDIVGQIAFLFDIVLQFCLAYR  129 (821)
Q Consensus        62 ~~~~~~P~s~~~~---------~w~~~~~~~~~~~~~~~p~~~~f~~~~~--~~-~~~~~~~~~~~f~~Di~l~f~t~y~  129 (821)
                      ..++|.|+++|+.         .+|.++++++.++++.+...-.-.....  .. +.+-++++..+|++++.++...--.
T Consensus      1103 s~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl 1182 (1956)
T KOG2302|consen 1103 SKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGL 1182 (1956)
T ss_pred             HHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHhhhh
Confidence            3679999999984         4566677777778777765532222221  22 3344589999999999886532211


Q ss_pred             eCCceEEeeccHHHHHHHhhh-hhHHHHHhh----hhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHh
Q 003425          130 DSQTYRLICKRTPIALRYLRS-SFIIDLFSC----MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHK  195 (821)
Q Consensus       130 ~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~----lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~  195 (821)
                      -.|.           ..|+++ |..+|.+-.    +-+.+.....+...++..||.+|++|-+|..|.+.+
T Consensus      1183 ~fge-----------~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSr 1242 (1956)
T KOG2302|consen 1183 YFGE-----------QAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISR 1242 (1956)
T ss_pred             ccch-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            1111           678887 777775433    222222333333444555555555555544444433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.56  E-value=4.1e-08  Score=106.96  Aligned_cols=81  Identities=25%  Similarity=0.347  Sum_probs=57.6

Q ss_pred             CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc---ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 003425          598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH  674 (821)
Q Consensus       598 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh  674 (821)
                      .|.+|..|+|+||+|+..+...++++|+++|++++.++   |.||||-|+..|+.+++-.||.+|+.+..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56677777778777777777777777777777766543   666777777777777777777777766667777777776


Q ss_pred             HHHH
Q 003425          675 VAAS  678 (821)
Q Consensus       675 ~A~~  678 (821)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6555

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.55  E-value=1.1e-07  Score=62.52  Aligned_cols=32  Identities=50%  Similarity=0.926  Sum_probs=25.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 003425          571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKD  602 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  602 (821)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888877765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.53  E-value=2e-07  Score=97.89  Aligned_cols=98  Identities=31%  Similarity=0.375  Sum_probs=85.0

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCC--CC--CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGAD--PN--RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~n--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      ..+..-..-|..|+...|+..+-.||.+|..  +|  ..+.+|+||||+||+.|++.+.++|+-+|+|+..+|.+|+|||
T Consensus       619 ~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l  698 (749)
T KOG0705|consen  619 CTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTAL  698 (749)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhh
Confidence            3333344457789999999999999999854  34  3467889999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCC
Q 003425          610 LEAIKYGNDGAASLLVKEGASL  631 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~  631 (821)
                      .||-+.|..+|+..|+++|...
T Consensus       699 ~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhHhhcccHHHHHHHHHcCCCc
Confidence            9999999999999999998754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.53  E-value=2e-07  Score=97.22  Aligned_cols=97  Identities=20%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCC----CCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCC
Q 003425          595 GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS----LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR  670 (821)
Q Consensus       595 g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  670 (821)
                      |.++-.++.+..+.||+|+..|+-++|++++++|..    .-..+|.|+||.|+..++..+.++|++.|+.+...|..|.
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~  968 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGK  968 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCC
Confidence            334444444444444444444444444444444421    1123455566666666666666666666667777777788


Q ss_pred             cHHHHHHHcCcHHHHHHHHHc
Q 003425          671 TPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       671 T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ||-.-|-..|..+++.+|-.+
T Consensus       969 tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  969 TPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             ChHHHHHhcCCchHHHHHhhh
Confidence            888887777887777777543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=2.6e-07  Score=96.76  Aligned_cols=86  Identities=36%  Similarity=0.387  Sum_probs=67.2

Q ss_pred             hhhHHHhcCCHHHHHHHH--HCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Q 003425          639 FLCTAVARGDSDLLKRVL--SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN  716 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll--~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~  716 (821)
                      |+|.++...+.+-+..++  +.+..++..|..|+||||+|+..|+.+.++.|+.+||++..+|+.|++|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            466666666655444433  235567888888999999999999999999999999999999999999999999999987


Q ss_pred             HHHHHHhc
Q 003425          717 LIKLLEDA  724 (821)
Q Consensus       717 i~~~Ll~~  724 (821)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            77665543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.44  E-value=1.5e-07  Score=102.67  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=78.0

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      .+-.|.-|.++||.|+..|..+++++|+++|+|++.+|. .|+||||-|...|+.+|+-.||.+|+.+..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            566788899999999999999999999999999999984 6999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 003425          611 EAIK  614 (821)
Q Consensus       611 ~A~~  614 (821)
                      .-++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.43  E-value=1.1e-06  Score=97.74  Aligned_cols=133  Identities=22%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAG----ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g----~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .+......|+..|+...|+..++..    .++|..|.-|+++|+.|+.+.+.++.++|++++...       ..+|.+|+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI   96 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAI   96 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHH
Confidence            3444567899999999999999753    468899999999999999999999999999986555       35899999


Q ss_pred             HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                      ..|..++|+.++.+-........                     .+......-..+-|||.+||..++.||++.|+++|+
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~---------------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLER---------------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhcc---------------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999987433211110                     111111222345677777777777777777777777


Q ss_pred             CCCCC
Q 003425          694 SVFPK  698 (821)
Q Consensus       694 ~~~~~  698 (821)
                      ++...
T Consensus       156 ~i~~P  160 (822)
T KOG3609|consen  156 CIPIP  160 (822)
T ss_pred             CCCCC
Confidence            76554

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.43  E-value=8.1e-06  Score=84.50  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          263 WKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (821)
Q Consensus       263 ~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~  318 (821)
                      -..|+.|+|...+|..++||||++|.|.-|+.+++++-++|.++.|.+++.++--+
T Consensus       285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL  340 (489)
T KOG3684|consen  285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL  340 (489)
T ss_pred             HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999886644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=5.9e-07  Score=94.19  Aligned_cols=87  Identities=32%  Similarity=0.432  Sum_probs=76.7

Q ss_pred             hhHHHHhhcCCHHHHHHHHHc--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          541 LKVNSAAYHGDLYQLEGLIRA--GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      .|+|+++...+.+-+...+..  +..++..|..|.||||+|+..|+.+.++.|+.+|+++..+|+.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            569999999988887775543  556888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q 003425          619 GAASLLVKE  627 (821)
Q Consensus       619 ~~v~~Ll~~  627 (821)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777654

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.29  E-value=5.1e-07  Score=99.89  Aligned_cols=113  Identities=23%  Similarity=0.308  Sum_probs=101.8

Q ss_pred             HHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEec
Q 003425          402 FINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE  481 (821)
Q Consensus       402 ~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~  481 (821)
                      ++..+-..+....+.||+.++++||..|++|+|..|.++.......|+..++..++.||.+|+...+++++|..|+.|+.
T Consensus       500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~AvR  579 (1158)
T KOG2968|consen  500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAVR  579 (1158)
T ss_pred             HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEEe
Confidence            55666677788899999999999999999999999999988766677777889999999999999999999999999999


Q ss_pred             ceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       482 ~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      ++++.+||..-|..+..+||....++.+.+.+.
T Consensus       580 dSelariPe~l~~~ik~ryP~v~~rl~~ll~~~  612 (1158)
T KOG2968|consen  580 DSELARIPEGLLNFIKLRYPQVVTRLIKLLAEK  612 (1158)
T ss_pred             ehhhhhccHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            999999999999999999999988777766653

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.29  E-value=4.6e-07  Score=104.14  Aligned_cols=90  Identities=38%  Similarity=0.430  Sum_probs=84.3

Q ss_pred             cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 003425          635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~  714 (821)
                      .|.+++|.|+..+..-+++.|+++|+++|..|..|+||||.+...|+...+..|+++||+.+..|..|.+|+++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHhc
Q 003425          715 KNLIKLLEDA  724 (821)
Q Consensus       715 ~~i~~~Ll~~  724 (821)
                      .+++-+|.-.
T Consensus       735 ~d~~~l~~l~  744 (785)
T KOG0521|consen  735 ADIVLLLRLA  744 (785)
T ss_pred             ccHHHHHhhh
Confidence            7777666544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.26  E-value=2.6e-06  Score=77.29  Aligned_cols=70  Identities=23%  Similarity=0.109  Sum_probs=64.9

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                      +.++|.+|..|+|||+.|+..|+.+.+.+|+.+| +++...|..|.+++.+|-+.|+.++++.|.+.-.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4689999999999999999999999999999999 899999999999999999999999999998874443

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.22  E-value=7.5e-06  Score=85.35  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCCC---CCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCc--
Q 003425          210 VKLIAVELYCSHIAACIFYYLATTLPPEQE---GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGD--  284 (821)
Q Consensus       210 ~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGd--  284 (821)
                      +.+++.+++...+||++||.++....+-..   ...|.+ +.            .-...+..+|+|++.|+||||||.  
T Consensus        39 ~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~-Cv------------~~~~~f~~aF~FSveT~tTIGYG~~~  105 (336)
T PF01007_consen   39 LLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTP-CV------------SNVNSFTSAFLFSVETQTTIGYGSRY  105 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-T-SE------------CT-TTHHHHHHHHHHHHTT---SSSE
T ss_pred             ehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCC-ce------------ecccchhhheeEEEEEEEEeccCCcc
Confidence            344455667777899999988754221111   111110 00            012368899999999999999999  


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          285 VHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       285 i~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      ++|..+...++.++-+++|+++.|+++|.+.+-++.-
T Consensus       106 ~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP  142 (336)
T PF01007_consen  106 PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP  142 (336)
T ss_dssp             B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            6788899999999999999999999999999988773

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=98.09  E-value=3.9e-06  Score=65.78  Aligned_cols=40  Identities=25%  Similarity=0.548  Sum_probs=36.6

Q ss_pred             cCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecCC
Q 003425           62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL  101 (821)
Q Consensus        62 ~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~  101 (821)
                      ..++|||+|.++.+||++++++++++++++|+.++|..+.
T Consensus        35 ~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~   74 (77)
T PF08412_consen   35 GPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE   74 (77)
T ss_pred             CCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence            3569999999999999999999999999999999997654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.08  E-value=1.4e-05  Score=89.15  Aligned_cols=134  Identities=22%  Similarity=0.209  Sum_probs=93.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcC
Q 003425          572 GRSPLHLAASRGYEEIMTFLIQKG----VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG  647 (821)
Q Consensus       572 g~t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~  647 (821)
                      +.-....|+..|+...|+..++..    .++|..|.-|+++|+.|+.+.+.+++++|++++...     ..+|.+|+..|
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~~   99 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIAVG   99 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHHHH
Confidence            344566788888888888887742    457777888888888888888888888888876543     44566666677


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       648 ~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      ...+|+.++.+.......        +.               .+......-.-+.||+.+||..+|.||++.|++.|++
T Consensus       100 ~v~~VE~ll~~~~~~~~~--------~~---------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  100 SVPLVELLLVHFVDAPYL--------ER---------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHHHHHHHhcccccchh--------cc---------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            777777766653222111        11               1112222334578999999999999999999999998


Q ss_pred             ccccCC
Q 003425          728 QLLEFP  733 (821)
Q Consensus       728 ~~~~~~  733 (821)
                      ...+..
T Consensus       157 i~~PH~  162 (822)
T KOG3609|consen  157 IPIPHD  162 (822)
T ss_pred             CCCCcc
Confidence            755443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.04  E-value=1.1e-05  Score=80.89  Aligned_cols=75  Identities=23%  Similarity=0.241  Sum_probs=63.9

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~  615 (821)
                      .--|+.||+.|+++.|++|++.|.++|+.|.-..+||.+|+..||.++|++|+++||-...-..+|.-+ |+++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhh
Confidence            345899999999999999999999999999999999999999999999999999998766544556554 444443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.00  E-value=7.9e-06  Score=93.17  Aligned_cols=128  Identities=26%  Similarity=0.239  Sum_probs=91.6

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHH
Q 003425          566 NRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAV  644 (821)
Q Consensus       566 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~  644 (821)
                      ......|+|.+|+++..++.-+++.+++- |......|.+|...+|.+ ..++.+.+-+|+                   
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfc-a~lg~ewA~ll~-------------------  627 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFC-AALGYEWAFLPI-------------------  627 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHh-hhcCCceeEEEE-------------------
Confidence            34445677788888888777777777774 555555566666666663 333333333222                   


Q ss_pred             hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC------CCCCCCCCCHHHHHHHcCCHHHH
Q 003425          645 ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV------FPKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       645 ~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~------~~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                                 .-+|..++.+|..|+||||+|+..|+..++..|++.|++.      +..+..|.|+-..|..+|+..+.
T Consensus       628 -----------~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  628 -----------SADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             -----------eecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchH
Confidence                       2356788889999999999999999999999999877654      33445699999999999999888


Q ss_pred             HHHHhc
Q 003425          719 KLLEDA  724 (821)
Q Consensus       719 ~~Ll~~  724 (821)
                      .+|-+.
T Consensus       697 ~~lse~  702 (975)
T KOG0520|consen  697 GYLSEK  702 (975)
T ss_pred             HHHhhh
Confidence            888665

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.97  E-value=1.1e-05  Score=92.10  Aligned_cols=128  Identities=23%  Similarity=0.167  Sum_probs=102.0

Q ss_pred             ccccchhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCc
Q 003425          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNT  607 (821)
Q Consensus       530 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t  607 (821)
                      .........|++-+|.++..+..-.++.+++. |-..+..|.+|.-.+|.+| .++.+.+-+|+ -+|..++.+|..|+|
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCc
Confidence            34456667889999999999999999999986 6667777788888888844 45555555554 468899999999999


Q ss_pred             HHHHHHHcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhcCCHHHHHHHHHC
Q 003425          608 PLLEAIKYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVARGDSDLLKRVLSN  658 (821)
Q Consensus       608 pL~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~~~~~~v~~Ll~~  658 (821)
                      |||+|+..|+..++..|++.|++...        ..|.|+...|..+|+..+..+|-+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999999988765443        2467777788888888777777664

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.96  E-value=2.8e-05  Score=78.03  Aligned_cols=69  Identities=29%  Similarity=0.320  Sum_probs=50.2

Q ss_pred             chhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHH
Q 003425          638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL  706 (821)
Q Consensus       638 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l  706 (821)
                      .-|+.||+.|+.+.|++|++.|.++|..|.-..+||.+|+..||.++|++|+++||-.+.-...|.-++
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            346777777777777777777777777777777788888878888888888887776555445555543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.91  E-value=9.7e-06  Score=93.47  Aligned_cols=91  Identities=32%  Similarity=0.350  Sum_probs=62.5

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA  612 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A  612 (821)
                      ...-..|.++||.|+..|..-+++.|++.|+++|..|..|+||||.+...|+...+..|+++|++++..+.+|.+|+++|
T Consensus       650 ~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  650 PVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             chhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            33444556777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCChHHHHH
Q 003425          613 IKYGNDGAASL  623 (821)
Q Consensus       613 ~~~~~~~~v~~  623 (821)
                      ....+.+.+-+
T Consensus       730 ~~~~~~d~~~l  740 (785)
T KOG0521|consen  730 MEAANADIVLL  740 (785)
T ss_pred             hhhccccHHHH
Confidence            66555554433

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.91  E-value=2.5e-05  Score=71.02  Aligned_cols=67  Identities=22%  Similarity=0.241  Sum_probs=59.9

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcC
Q 003425          562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG  628 (821)
Q Consensus       562 g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  628 (821)
                      +.++|.+|..|||||++|+..|+.+.+.||+.+| +.+...|..|.+++.+|-+.|..+.++.|-+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4678899999999999999999999999999999 889999999999999999999999999888763

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=97.78  E-value=0.00019  Score=80.30  Aligned_cols=56  Identities=18%  Similarity=0.448  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .+..|+|++++++||+|||++.|.|..|++++++..++|+=++.++++.++..+..
T Consensus       115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~  170 (433)
T KOG1418|consen  115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD  170 (433)
T ss_pred             ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999999999999999999887754

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=97.72  E-value=0.00015  Score=71.95  Aligned_cols=56  Identities=23%  Similarity=0.450  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhhccccCccccCC-------hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVN-------LRE-MVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t-------~~e-~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|.+|+||.++|+||+|+||.++--       ..+ +.+..+++++|+.+++-.++.+.-.+.+
T Consensus       186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t  249 (350)
T KOG4404|consen  186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMT  249 (350)
T ss_pred             chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999998842       233 3567788889999888877766555544

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.60  E-value=0.00019  Score=80.31  Aligned_cols=108  Identities=19%  Similarity=0.296  Sum_probs=93.3

Q ss_pred             HHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccc-c---cccCC---cceEEE
Q 003425          406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS-I---LCNIP---QPYTVQ  478 (821)
Q Consensus       406 l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~-~---~~~~~---~~~~~~  478 (821)
                      ++.+++...+..|++|++.|++.+.+|.+.+|.+.+...+.+|++..+....+|+.|.... +   +.+.|   +...++
T Consensus       111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak  190 (1158)
T KOG2968|consen  111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK  190 (1158)
T ss_pred             echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence            3477888899999999999999999999999999999999999999999999997665442 3   33444   467899


Q ss_pred             EecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          479 VCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       479 a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      |.++|.+.++|...|.+...++|+-...+.+.++.
T Consensus       191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmT  225 (1158)
T KOG2968|consen  191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMT  225 (1158)
T ss_pred             eecCceEEEeccchhhhhhccChHHHHHHHHHHHH
Confidence            99999999999999999999999988887776654

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=97.41  E-value=7.4e-05  Score=78.30  Aligned_cols=51  Identities=25%  Similarity=0.364  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (821)
Q Consensus       266 Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~  316 (821)
                      ...|+||.++|.+||||||..|.-|...+..++++-+..++..--+-.++.
T Consensus       218 lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~  268 (1087)
T KOG3193|consen  218 LFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ  268 (1087)
T ss_pred             eeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence            447899999999999999999999988887776655555555444444443

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=97.17  E-value=0.00017  Score=71.58  Aligned_cols=50  Identities=20%  Similarity=0.400  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNM  314 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i  314 (821)
                      ++.-||||+++.+||+|||--+|.|..|++|+++..++|+-+.-..+..+
T Consensus        80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~  129 (350)
T KOG4404|consen   80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI  129 (350)
T ss_pred             ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence            57789999999999999999999999999999999998887665555444

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=97.17  E-value=0.006  Score=54.32  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHh-cccccccccCeEEccC-CccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccccc----
Q 003425          397 GCSSEFINQIVIR-LHEEFFLPGEVIMEKG-NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN----  470 (821)
Q Consensus       397 ~~~~~~l~~l~~~-~~~~~~~~~e~I~~~g-~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~----  470 (821)
                      +.|.....+|+.. .+.....+|+.-.-|| .+.|.+-++++|.+++..   +|  ..+.++.|.+|.....+...    
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g--~fLH~I~p~qFlDSPEW~s~~~s~   88 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DG--RFLHYIYPYQFLDSPEWESLRPSE   88 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CC--EeeEeecccccccChhhhccccCC
Confidence            4677777888877 6678999999988888 467899999999999987   44  35777788877776665543    


Q ss_pred             -CCcceEEEEecceEEEEechHhHHHHHHHhhhchHH
Q 003425          471 -IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (821)
Q Consensus       471 -~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~  506 (821)
                       .....|+.|.++|..+..+|+.+..++.+.|.+..-
T Consensus        89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v  125 (153)
T PF04831_consen   89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAV  125 (153)
T ss_pred             CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence             345789999999999999999999999999876554

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=97.08  E-value=0.0033  Score=64.34  Aligned_cols=100  Identities=15%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCC---CceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcc
Q 003425          209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEG---YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV  285 (821)
Q Consensus       209 ~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi  285 (821)
                      ++.+...+++...+||++||.+++...+-...   .+|.+=.             .-...+..||-|++-|=||+|||--
T Consensus        66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------------~nV~sf~sAFLFSiETQtTIGYG~R  132 (400)
T KOG3827|consen   66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------------MNVHSFTSAFLFSIETQTTIGYGFR  132 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------------eeccchhhhheeeeeeeeeeecccc
Confidence            33344445555667999999999764432221   1222110             1123677899999999999999987


Q ss_pred             ccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          286 HAVN--LREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       286 ~p~t--~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      .++.  +...+..++=+++|+++-|+++|.+.+-+.+-
T Consensus       133 ~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP  170 (400)
T KOG3827|consen  133 YVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP  170 (400)
T ss_pred             ccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            6653  56666677778999999999999998877663

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.03  E-value=0.008  Score=74.52  Aligned_cols=105  Identities=19%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             eehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHH
Q 003425          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRL  183 (821)
Q Consensus       105 ~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl  183 (821)
                      +++.+.+...+|..|+.+..           .-.+|    ..|+.+ |.++|.+-+. +.++.........+.+||.+|+
T Consensus       475 l~~~~~vF~~lF~~Em~~ki-----------~al~~----~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frl  538 (1592)
T KOG2301|consen  475 LYLGNVVFTGLFTVEMILKI-----------YALGP----RNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRL  538 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----------HHcCc----HHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHH
Confidence            56777888889999998854           23334    557666 6799988777 6555555455566778888888


Q ss_pred             HHHHHHHHHHHhhhhhHh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 003425          184 YRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAAC  225 (821)
Q Consensus       184 ~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac  225 (821)
                      +|++|+.+....++.... +......+..+++++++++.++|.
T Consensus       539 lRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~  581 (1592)
T KOG2301|consen  539 LRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAA  581 (1592)
T ss_pred             HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            888888877766665443 233444455555555555555443

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.98  E-value=0.0013  Score=68.91  Aligned_cols=72  Identities=29%  Similarity=0.360  Sum_probs=59.2

Q ss_pred             CHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          648 DSDLLKRVLSNGIDPNT------RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       648 ~~~~v~~Ll~~g~~~~~------~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      -.+.+++|.+++++.|.      .+..-.|+||+|+..|..++|.+||+.|+|+..+|..|.||..++.   +.++-...
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHH
Confidence            35678888888776653      3445679999999999999999999999999999999999999887   55655555


Q ss_pred             H
Q 003425          722 E  722 (821)
Q Consensus       722 l  722 (821)
                      +
T Consensus       480 ~  480 (591)
T KOG2505|consen  480 I  480 (591)
T ss_pred             H
Confidence            4

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=96.91  E-value=0.0088  Score=57.23  Aligned_cols=98  Identities=9%  Similarity=0.024  Sum_probs=77.3

Q ss_pred             HHHHHHHhcccccccccCeE-EccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEe
Q 003425          402 FINQIVIRLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC  480 (821)
Q Consensus       402 ~l~~l~~~~~~~~~~~~e~I-~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~  480 (821)
                      ....+....++..+++|..+ +.+....+..|++.+|.+.+.  ..+  ...+....+...||-...+.+....+..+|.
T Consensus        14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir--r~d--~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae   89 (207)
T PRK11832         14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR--REE--NVLIGITQAPYIMGLADGLMKNDIPYKLISE   89 (207)
T ss_pred             HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE--ecC--CeEEEeccCCeEeecccccCCCCceEEEEEc
Confidence            34556666777899999996 555555577999999999983  233  3567778888899977767666667899999


Q ss_pred             cceEEEEechHhHHHHHHHhhhc
Q 003425          481 ELCRLLRIDKQSFTNIIDIYFCD  503 (821)
Q Consensus       481 ~~~~~~~i~~~~f~~~l~~~p~~  503 (821)
                      ++|+++.+|.++|.++++++.-+
T Consensus        90 ~~c~~~~i~~~~~~~iie~~~LW  112 (207)
T PRK11832         90 GNCTGYHLPAKQTITLIEQNQLW  112 (207)
T ss_pred             CccEEEEeeHHHHHHHHHHhchH
Confidence            99999999999999999987633

>PLN03223 Polycystin cation channel protein; Provisional

Probab=96.70  E-value=0.093  Score=62.54  Aligned_cols=54  Identities=20%  Similarity=0.229  Sum_probs=29.8

Q ss_pred             CChhHHHHHHHHHHHHHHHhhhcceeee--------eecCCCcCeehhHHHHHHHHHHhHhh
Q 003425           69 DNRWYRAWTKFILIWAVYSSIFTPVEFG--------FFRGLSKNLYVLDIVGQIAFLFDIVL  122 (821)
Q Consensus        69 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~--------f~~~~~~~~~~~~~~~~~~f~~Di~l  122 (821)
                      .+.+....+++++++++|.++--...+.        +.......|.++|++..++.+.=|++
T Consensus      1171 ~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvL 1232 (1634)
T PLN03223       1171 EDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMM 1232 (1634)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHH
Confidence            3445666666666666666554332221        11123456778888776665555554

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.65  E-value=0.064  Score=63.85  Aligned_cols=88  Identities=10%  Similarity=0.046  Sum_probs=46.4

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhcceeeeeecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhh
Q 003425           70 NRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLR  149 (821)
Q Consensus        70 s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk  149 (821)
                      ++...+|-.+++.+.++.++...+.+-|....+ .+.++-++-.+.+++|.+=+....   +.. .   =+++++..|-.
T Consensus       790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~Ps-~~Ew~~~~~iftl~~E~vRq~~~s---e~~-~---l~~kv~v~f~d  861 (1381)
T KOG3614|consen  790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPSPS-MWEWILFAWIFTLFLEEVRQIFIS---ESG-L---LPQKVRVYFAD  861 (1381)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHheeccCCCCC-ccchhHHHHHHHHHHHHHHHHhcC---CCc-c---hhhHHHHHHHH
Confidence            456677777666655555555555555544332 222222222233445544333222   221 1   14555555556


Q ss_pred             hhhHHHHHhhhhHHHH
Q 003425          150 SSFIIDLFSCMPWDLI  165 (821)
Q Consensus       150 ~~f~iDlis~lP~~~~  165 (821)
                      .|+.+|+++++-|.+-
T Consensus       862 ~wN~~d~~ai~~F~vG  877 (1381)
T KOG3614|consen  862 FWNLIDLLAILLFLVG  877 (1381)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            6899999998876554

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.51  E-value=0.0029  Score=66.51  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             cCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          549 HGDLYQLEGLIRAGADPNR------TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       549 ~g~~~~v~~Ll~~g~~~n~------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      ..-.+.+++|.+++++.|.      .+..-.|+||+|+.+|..++|.+||+.|+|+..+|..|.||..++.
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3446778899988877653      3455679999999999999999999999999999999999998886

>smart00248 ANK ankyrin repeats

Probab=96.45  E-value=0.0049  Score=38.21  Aligned_cols=27  Identities=48%  Similarity=0.722  Sum_probs=17.8

Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 003425          669 LRTPLHVAASEGLYLMAKLLVEAGASV  695 (821)
Q Consensus       669 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~  695 (821)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            566666666666666666666666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.41  E-value=0.071  Score=66.47  Aligned_cols=135  Identities=20%  Similarity=0.138  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhhhcceeeeeecC---CCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hh
Q 003425           77 TKFILIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SF  152 (821)
Q Consensus        77 ~~~~~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f  152 (821)
                      ..+++..++.++...+..-....+   ....+.+.|++...+|+++++++.            +..--   .-|+++ |.
T Consensus       843 ~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~------------ia~Gf---~~y~rn~w~  907 (1592)
T KOG2301|consen  843 EAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKW------------IAYGF---FFYFRNAWN  907 (1592)
T ss_pred             HHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHH------------HHhHH---HHHHhhHHh
Confidence            444555555555555444333222   234577899999999999999944            22211   228988 77


Q ss_pred             HHHHHhhhhHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          153 IIDLFSCMPWDLIYKASG-RKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACI  226 (821)
Q Consensus       153 ~iDlis~lP~~~~~~~~~-~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~  226 (821)
                      ++|++...-..+.+.... ....++.||.+|.+|-+|....+..++.... +...+..+....+..+++..++||+
T Consensus       908 ~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~  983 (1592)
T KOG2301|consen  908 WLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIM  983 (1592)
T ss_pred             hhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887665433322221 2445666666666666666666665443332 2233334444444444444455544

>smart00248 ANK ankyrin repeats

Probab=96.28  E-value=0.0072  Score=37.38  Aligned_cols=27  Identities=56%  Similarity=0.972  Sum_probs=15.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 003425          572 GRSPLHLAASRGYEEIMTFLIQKGVDI  598 (821)
Q Consensus       572 g~t~L~~A~~~g~~~~v~~Ll~~g~~~  598 (821)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=95.82  E-value=0.025  Score=61.59  Aligned_cols=111  Identities=16%  Similarity=0.301  Sum_probs=85.3

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccc-cccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFF-LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG  463 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~-~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fG  463 (821)
                      ..++..+.|-|.+++-+..++|+..|....+ ..|.+|+..|+.-|..+.|+.|.|++..  ++|+.   ..+.-|+.||
T Consensus       279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~---e~l~mGnSFG  353 (1283)
T KOG3542|consen  279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR---EELKMGNSFG  353 (1283)
T ss_pred             HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce---EEeecccccC
Confidence            3467778899999999999999999876644 6799999999999999999999999987  55654   3467799999


Q ss_pred             cccccccCCcceEEE-EecceEEEEechHhHHHHHHHh
Q 003425          464 EVSILCNIPQPYTVQ-VCELCRLLRIDKQSFTNIIDIY  500 (821)
Q Consensus       464 e~~~~~~~~~~~~~~-a~~~~~~~~i~~~~f~~~l~~~  500 (821)
                      ...-...+-..-.++ -+.+|+..+|...+|-.++...
T Consensus       354 ~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~v  391 (1283)
T KOG3542|consen  354 AEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTV  391 (1283)
T ss_pred             CCCCcchhhhhhhhheecccceEEEeehhhHHHHHHHH
Confidence            654333222111222 3678999999999998887654

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.80  E-value=0.049  Score=50.27  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=26.5

Q ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       673 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                      |..|+..|....+.-.+++|.+++.      ++|..|+..++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            4556666666666666666665542      4666666666666666554

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.79  E-value=0.06  Score=51.08  Aligned_cols=45  Identities=24%  Similarity=0.225  Sum_probs=23.4

Q ss_pred             HHHHHHHHHCC-CCCCC---CCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          649 SDLLKRVLSNG-IDPNT---RDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       649 ~~~v~~Ll~~g-~~~~~---~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                      ..++++++++| +++|.   +-+.|.|-|.-|+.+++.+++.+|+++||
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            34555555555 34442   22345555555555555555555555555

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.47  E-value=0.074  Score=50.46  Aligned_cols=114  Identities=21%  Similarity=0.216  Sum_probs=72.8

Q ss_pred             HHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHH--cCcH
Q 003425          609 LLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY----DLRTPLHVAAS--EGLY  682 (821)
Q Consensus       609 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~----~g~T~Lh~A~~--~g~~  682 (821)
                      |--|+...+.+-+.-++..     ..+..+++-+|+.++..+++.+|+..- +...+|-    .+.--+.++..  ..+.
T Consensus       157 ledAV~AsN~~~i~~~Vtd-----KkdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~  230 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTD-----KKDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASY  230 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcc-----hHHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcH
Confidence            4455555555555544432     123445666677667777777776531 1111110    12222333332  3467


Q ss_pred             HHHHHHHHcC-CCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          683 LMAKLLVEAG-ASVFPK---DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       683 ~~v~~Ll~~g-a~~~~~---d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                      .++++.+++| +++|.+   -+.|.|-|+-|.+.++.+++..|+++||-.
T Consensus       231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            8899999998 677753   577999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=95.22  E-value=0.22  Score=46.11  Aligned_cols=137  Identities=16%  Similarity=0.085  Sum_probs=96.5

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      ..-+..|++.+-+++++..-+...+-   -...++..-.||+..+.++|+|+-+.   ....+  -.+-...|....+.+
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~~--~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIYN--PEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCCC--chhhhhhhhhccchh
Confidence            45577899999999998886653321   13456788899999999999999433   22222  235567788888777


Q ss_pred             HHH----HHHhcCCCCCcccc----cchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          620 AAS----LLVKEGASLNVEEA----GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       620 ~v~----~Ll~~~~~~~~~~~----~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      +..    ++.++..+-...+-    ..-|..|+..|-...+...+++|.+++.      ++|..|+.+++..++.+++.
T Consensus       119 LyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            632    23333222211111    1347889999999999999999988754      89999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=94.41  E-value=0.0083  Score=66.93  Aligned_cols=47  Identities=26%  Similarity=0.508  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHH--------HHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREM--------VFIMIYVSFDMILGAYLI  311 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~--------~~~~~~~i~g~~~~a~~i  311 (821)
                      .|+.|+||+++++|||||||++|.+...+        .+..++.++|...++.+.
T Consensus       242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            47789999999999999999999998866        577778888888887776

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=93.04  E-value=0.12  Score=56.60  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=79.0

Q ss_pred             cHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce
Q 003425          373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (821)
Q Consensus       373 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~  452 (821)
                      |+.|+......--...+.+...|+++-...+..++...+...++.+.++|+.|+.+...|++++|.|-+..     .   
T Consensus        23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----q---   94 (1283)
T KOG3542|consen   23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----Q---   94 (1283)
T ss_pred             CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----c---
Confidence            44444433333333456677888899899999999999999999999999999999999999999976542     1   


Q ss_pred             EEEeCCCCccccccccccCCcceEEEEecceEEEEec
Q 003425          453 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRID  489 (821)
Q Consensus       453 i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~  489 (821)
                        ..-|-.+||-.   +|..|..++-.++++++++++
T Consensus        95 --i~mp~~~fgkr---~g~~r~~nclllq~semivid  126 (1283)
T KOG3542|consen   95 --IYMPYGCFGKR---TGQNRTHNCLLLQESEMIVID  126 (1283)
T ss_pred             --eecCccccccc---cccccccceeeecccceeeee
Confidence              23455667754   367788888889999988883

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.98  E-value=16  Score=42.58  Aligned_cols=45  Identities=13%  Similarity=0.268  Sum_probs=36.2

Q ss_pred             HhhCcHHHHHHHHHhhhhhhcc-----ccccccCCCHHHHHHHHHhcccc
Q 003425          369 LQDIPISIRAKISQTLYLPYIE-----KVPLFKGCSSEFINQIVIRLHEE  413 (821)
Q Consensus       369 l~~lp~~L~~~i~~~~~~~~l~-----~~~~f~~~~~~~l~~l~~~~~~~  413 (821)
                      ..+||+.||+.|..+...++..     .-.+++++|++...+|..++-..
T Consensus       370 ~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~  419 (727)
T KOG0498|consen  370 RRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLD  419 (727)
T ss_pred             hccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHH
Confidence            3579999999999988777654     34688999999999998887443

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.91  E-value=4.3  Score=47.16  Aligned_cols=74  Identities=15%  Similarity=0.067  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhhhcceeeeee-----cCCCcCeehhHHHHHHHHHHhHhheeeE-EEEeCCceEEeeccHHHHHHHhh
Q 003425           76 WTKFILIWAVYSSIFTPVEFGFF-----RGLSKNLYVLDIVGQIAFLFDIVLQFCL-AYRDSQTYRLICKRTPIALRYLR  149 (821)
Q Consensus        76 w~~~~~~~~~~~~~~~p~~~~f~-----~~~~~~~~~~~~~~~~~f~~Di~l~f~t-~y~~~~~~~~v~~~~~I~~~Ylk  149 (821)
                      ++.+-++.++++++..-.+-.-.     ++-...+..+|-++.++|.+++++++.. |.+.+             +-|+-
T Consensus        81 fe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalgifgk-------------kcylg  147 (1956)
T KOG2302|consen   81 FECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALGIFGK-------------KCYLG  147 (1956)
T ss_pred             HHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------ccccc
Confidence            35555556666666554332111     1223447789999999999999997632 22211             45775


Q ss_pred             h-hhHHHHHhhhhH
Q 003425          150 S-SFIIDLFSCMPW  162 (821)
Q Consensus       150 ~-~f~iDlis~lP~  162 (821)
                      . |.-+|++.++.=
T Consensus       148 dtwnrldffiv~ag  161 (1956)
T KOG2302|consen  148 DTWNRLDFFIVMAG  161 (1956)
T ss_pred             Cchhhhhhhheehh
Confidence            4 777887766553

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=90.30  E-value=5.4  Score=44.21  Aligned_cols=18  Identities=17%  Similarity=0.248  Sum_probs=13.4

Q ss_pred             HHHHhhh-hhHHHHHhhhh
Q 003425          144 ALRYLRS-SFIIDLFSCMP  161 (821)
Q Consensus       144 ~~~Ylk~-~f~iDlis~lP  161 (821)
                      .++|+++ |.++|++.++-
T Consensus       236 g~~y~~~~WN~~e~~ii~l  254 (425)
T PF08016_consen  236 GRAYFKSFWNWLELLIILL  254 (425)
T ss_pred             hhHHhhhcCcHHHHHHHHH
Confidence            3688888 77999877654

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.26  E-value=12  Score=44.24  Aligned_cols=38  Identities=13%  Similarity=0.208  Sum_probs=20.4

Q ss_pred             CccccCC--hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 003425          283 GDVHAVN--LREMVFIMIYVSFDMILGAYLIGN-MTALIVK  320 (821)
Q Consensus       283 Gdi~p~t--~~e~~~~~~~~i~g~~~~a~~i~~-i~~~~~~  320 (821)
                      ||..|.+  ...+++++++..+-+++.+++.-+ +.+++..
T Consensus       637 G~~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~  677 (798)
T KOG3599|consen  637 GDFCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIIND  677 (798)
T ss_pred             ccCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666653  345566666555555555544444 4555544

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=87.68  E-value=4.5  Score=38.99  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-hhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 003425          175 VRYLLWIRLYRVRKVSQFFHK-MEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATT  233 (821)
Q Consensus       175 ~~~l~llrl~rl~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~  233 (821)
                      .+.+|++|++|+.|..+.++. +....+......++..++...++...+.++..+.-...
T Consensus        65 ~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~  124 (200)
T PF00520_consen   65 FRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN  124 (200)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred             EEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccc
Confidence            344444455555444442222 22333444455677778788877778888888776643

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>PLN03223 Polycystin cation channel protein; Provisional

Probab=87.31  E-value=27  Score=43.03  Aligned_cols=17  Identities=29%  Similarity=0.176  Sum_probs=13.3

Q ss_pred             HHHhhh-hhHHHHHhhhh
Q 003425          145 LRYLRS-SFIIDLFSCMP  161 (821)
Q Consensus       145 ~~Ylk~-~f~iDlis~lP  161 (821)
                      +.|+++ |-|+|++.++-
T Consensus      1208 laYFKSfWNwLEIl~IlL 1225 (1634)
T PLN03223       1208 LAYFLSGWNYVDFASIGL 1225 (1634)
T ss_pred             hhHhccchHHHHHHHHHH
Confidence            689998 88999966443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=82.69  E-value=2.3  Score=33.94  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=27.5

Q ss_pred             hHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 003425          542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK  594 (821)
Q Consensus       542 ~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  594 (821)
                      -+..|+..|+.|+++.+++.+ .++      ..++..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            355666666666666666543 111      3456666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins

Probab=81.14  E-value=4.6  Score=32.09  Aligned_cols=50  Identities=20%  Similarity=0.409  Sum_probs=40.4

Q ss_pred             EcCccHHHHHHHHHhHcCCCCCcc-cccCCCceeee---eeeeecCCeEEEeec
Q 003425          770 WIPQNIKDLIKTAAEQLDFRGGDC-ILSSEGGKILD---VDMINDDQKLYLIQE  819 (821)
Q Consensus       770 ~lp~~~~~l~~~~~~~~~~~~~~~-~~~~~g~~~~~---~~~~r~~~~~~~~~~  819 (821)
                      ..-.+++||+..+.+.+..+.+.+ ++.+||-++++   +...-||..+.++..
T Consensus        18 V~A~sL~EL~~K~~~~L~~~~~~~lvLeeDGT~Vd~EeyF~tLpdnT~lm~L~~   71 (81)
T cd06537          18 LTAASLQELLAKALETLLLSGVLTLVLEEDGTAVDSEDFFELLEDDTCLMVLEQ   71 (81)
T ss_pred             EEccCHHHHHHHHHHHhCCCCceEEEEecCCCEEccHHHHhhCCCCCEEEEECC
Confidence            345789999999999999976544 48889999966   778888988888764

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=81.04  E-value=2.3  Score=39.05  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          263 WKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       263 ~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      ......++|+++.+++. +-++..|.+...|++.+++.++++++.+.-.+++++.+..
T Consensus        42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~   98 (148)
T PF00060_consen   42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV   98 (148)
T ss_dssp             HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44677888888888776 4478999999999999999999999999999999998755

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	821
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-28
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-27
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-27
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-11
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-25
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-10
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		8e-20
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-19
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-18
1uoh_A	226	Human Gankyrin Length = 226		3e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-15
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-05
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-15
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-15
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-15
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		6e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		9e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-06
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-13
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-12
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-10
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-12
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		6e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		9e-12
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-11
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-11
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-08
2ptm_A	198	Structure And Rearrangements In The Carboxy-Termina		2e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		8e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-10
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-10
3otf_A	220	Structural Basis For The Camp-Dependent Gating In H		2e-10
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		2e-10
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		3e-10
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		4e-10
3bpz_A	202	Hcn2-I 443-460 E502k In The Presence Of Camp Length		5e-10
3u11_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		7e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-10
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-09
3etq_A	204	X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2		1e-09
3ffq_A	202	Hcn2i 443-640 Apo-State Length = 202		1e-09
2q0a_A	200	Structure And Rearrangements In The Carboxy-Termina		1e-09
1q3e_A	207	Hcn2j 443-645 In The Presence Of Cgmp Length = 207		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		9e-07
4hbn_A	205	Crystal Structure Of The Human Hcn4 Channel C-termi		2e-09
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-09
3u10_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		2e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-07
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-09
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-09
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		4e-09
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-07
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		7e-09
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		8e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-08
3u0z_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		9e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-08
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-07
1q43_A	207	Hcn2i 443-640 In The Presence Of Camp, Selenomethio		2e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-08
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		4e-08
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		1e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		1e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-07
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-07
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-07
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-07
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-05
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-05
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-06
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-06
3ukn_A	212	Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN		1e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		1e-05
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		7e-05
1dc2_A	156	Solution Nmr Structure Of Tumor Suppressor P16ink4a		7e-05
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		7e-05
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		7e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-04
2qvs_B	310	Crystal Structure Of Type Iia Holoenzyme Of Camp-De		2e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-04
3idb_B	161	Crystal Structure Of (108-268)riib:c Holoenzyme Of		3e-04
3idc_B	164	Crystal Structure Of (102-265)riib:c Holoenzyme Of		3e-04
3of1_A	246	Crystal Structure Of Bcy1, The Yeast Regulatory Sub		5e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		5e-04
3tnp_B	416	Structure And Allostery Of The Pka Riib Tetrameric		6e-04
3tnq_A	416	Structure And Allostery Of The Pka Riib Tetrameric		6e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  124 bits (311), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/186 (39%), Positives = 99/186 (53%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ LI  GAD N +D DGR+PLH AA  G++EI+  LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N KD+ G TPL  A K                                G  +++K ++
Sbjct: 62  DVNAKDSDGRTPLHYAAK-------------------------------EGHKEIVKLLI 90
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
           S G D N +D D RTPLH AA EG   + KLL+  GA V   D  G TPLD  R  GN+ 
Sbjct: 91  SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 717 LIKLLE 722
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 49/89 (55%)
Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
           + E G  L  A   G+ D +K ++ NG D N  D D RTPLH AA EG   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG 60
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A V  KD  G TPL      G+K ++KLL
Sbjct: 61  ADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  122 bits (305), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 99/186 (53%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ L+  GADPN +D DGR+PLH AA  G++EI+  L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D N KD+ G TPL  A + G+                                +++K +L
Sbjct: 62  DPNAKDSDGRTPLHYAAENGH-------------------------------KEIVKLLL 90
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
           S G DPN +D D RTPLH AA  G   + KLL+  GA     D  G TPLD  R  GN+ 
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 717 LIKLLE 722
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/89 (43%), Positives = 48/89 (53%)
Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
           + E G  L  A   G+ D +K +L NG DPN  D D RTPLH AA  G   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG 60
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A    KD  G TPL      G+K ++KLL
Sbjct: 61  ADPNAKDSDGRTPLHYAAENGHKEIVKLL 89

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  119 bits (297), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/186 (38%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ LI  GAD N +D DGR+PLH AA  G++E++  LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N KD+ G TPL  A + G+     LL+ +GA                           
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA--------------------------- 94
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
               D N +D D RTPLH AA  G   + KLL+  GA V   D  G TPLD  R  GN+ 
Sbjct: 95  ----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 717 LIKLLE 722
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/89 (42%), Positives = 48/89 (53%)
Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
           + E G  L  A   G+ D +K ++ NG D N  D D RTPLH AA  G   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A V  KD  G TPL      G+K ++KLL
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLL 89

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/186 (36%), Positives = 97/186 (52%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ L+  GAD N +D DG++PLHLAA  G++E++  L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D N KD+ G TPL  A + G+     LL                               L
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLL-------------------------------L 90
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
           S G DPN +D D +TPLH+AA  G   + KLL+  GA     D  G TPLD  R  GN+ 
Sbjct: 91  SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 717 LIKLLE 722
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/89 (41%), Positives = 48/89 (53%)
Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
           + E G  L  A   G+ D +K +L NG D N  D D +TPLH+AA  G   + KLL+  G
Sbjct: 1   MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A    KD  G TPL      G+K ++KLL
Sbjct: 61  ADPNAKDSDGKTPLHLAAENGHKEVVKLL 89

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.4 bits (246), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 64/187 (34%), Positives = 95/187 (50%), Gaps = 31/187 (16%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
           +N KD  G TPL  A + G+     +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
              D N +D D  TPLH+AA EG   + ++L++AGA V  +D++G TP D     GN+++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 718 IKLLEDA 724
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 31/187 (16%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
           +N KD  G TPL  A + G+     +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
              D N +D D  TPLH+AA EG   + ++L++AGA V  +D++G TP D     G++++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 718 IKLLEDA 724
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N KD  G TPL  A + G+     +L+K GA                           
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
               D N +D D  TPLH+AA EG   + ++L++AGA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N TD+ G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  DN+G TPL  A   G+     +L+K GA                           
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
               D N +DY+  TPLH+AA +G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
           +GR+PLHLAA  G+ E++  L++ G D+N KD  G TPL  A + G+     LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 631 LNVEEAG--SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 688
           +N ++    + L  A   G  +++K +L  G D N +D + RTPLH+AA  G   + KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 689 VEAGA 693
           +EAGA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 643 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 702
           A   G  +++K +L  G D N +D + RTPLH+AA  G   + KLL+EAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 703 NTPLDEGRMCGNKNLIKLLEDA 724
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N TD DG +PLHLAAS G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G TPL  A                                A G  ++++ +L
Sbjct: 72  DVNASDLTGITPLHLA-------------------------------AATGHLEIVEVLL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            +G D N  D D  TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 9   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKR 654
            KD+ G +PL  A   G D     L+ +GA +N V + G   CT    A ++   ++   
Sbjct: 69  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 125
Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGR 710
           +L  G +P+ +D+   T +H AA++G   M  +L+   AS   +D  GNTPL    DE R
Sbjct: 126 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 185
Query: 711 MCGNKNLI 718
           +   K L+
Sbjct: 186 VEEAKLLV 193

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 67/188 (35%), Positives = 100/188 (53%), Gaps = 13/188 (6%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 8   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKR 654
            KD+ G +PL  A   G D     L+ +GA +N V + G   CT    A ++   ++   
Sbjct: 68  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNG---CTPLHYAASKNRHEIAVM 124
Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGR 710
           +L  G +P+ +D+   T +H AA++G   M  +L+   AS   +D  GNTPL    DE R
Sbjct: 125 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 184
Query: 711 MCGNKNLI 718
           +   K L+
Sbjct: 185 VEEAKLLV 192

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 93/186 (50%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D+ G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N KD+ G TPL  A +                               RG  ++++ +L
Sbjct: 72  DVNAKDSLGVTPLHLAAR-------------------------------RGHLEIVEVLL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            NG D N  D    TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + G  L  A   G  D ++ +++NG D N RD+   TPLH+AA  G   + ++L++ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 736
           V  KD  G TPL      G+  ++++L    +       HGF
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGF 114

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 90.1 bits (222), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G++PLHLAA +G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G+TPL  A  YG+     +L+K GA +N  +   F                 
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
                         TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AY G L +L+  I A      RTD D R+ LH A S G+ EI+ FL+Q GV +N KD+ G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
            +PL  A   G D     L+ +GA +N V + G   CT    A ++   ++   +L  G 
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGRMCGNKN 716
           +P+ +D+   T +H AA++G   M  +L+   AS   +D  GNTPL    DE R+   K 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 717 LI 718
           L+
Sbjct: 191 LV 192

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N +D+ G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D+ G TPL                                 A  RG  ++++ +L
Sbjct: 72  DVNADDSLGVTPLH-------------------------------LAADRGHLEVVEVLL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            NG D N  D++  TPLH+AA+ G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 66/182 (36%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AY G L +L+  I A      RTD D R+ LH A S G+ EI+ FL+Q GV +N KD+ G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLN-VEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
            +PL  A   G D     L+ +GA +N V + G   CT    A ++   ++   +L  G 
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG---CTPLHYAASKNRHEIAVMLLEGGA 130
Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL----DEGRMCGNKN 716
           +P+ +D+   T +H AA++G   M  +L+   AS   +D  GNTPL    DE R+   K 
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 717 LI 718
           L+
Sbjct: 191 LV 192

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D++  D FG TPL  A  +G+                                ++++ +L
Sbjct: 72  DVDASDVFGYTPLHLAAYWGH-------------------------------LEIVEVLL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            NG D N  D D  TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G+TPL  A  +G+     +L+K GA +N ++                     
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKD--------------------- 110
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            NGI          TPLH+AA+ G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 111 DNGI----------TPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 31/185 (16%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N  D+ GR+PLH+AA+ G+ EI+  L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
           +N  D  G TPL  A   G+     +L+K GA +N ++A                     
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDA--------------------- 99
Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
            GI          TPL++AA  G   + ++L++ GA V  +D++G T  D     GN++L
Sbjct: 100 TGI----------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 718 IKLLE 722
            ++L+
Sbjct: 150 AEILQ 154

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D+ G TPL  A  +G+             L + E                   +L
Sbjct: 72  DVNAVDHAGMTPLRLAALFGH-------------LEIVEV------------------LL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
            NG D N  D +  TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N TD  G +PLHLAA+ G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G+TPL  A   G+     +L+K GA +N  +           GD        
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
                         TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 100/186 (53%), Gaps = 5/186 (2%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDNF 604
           AA +  L  ++ LI+AGA  +  D +G + LHLAA +G+ E++ +L+  G +D+N +D+ 
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT--AVARGDSDLLKRVLSNGIDP 662
           G TP++ A +Y +     LL+ +G+ +N+ +    +C   A   G  D+ + +L+   D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           +  +    +PLH+AA E  Y    L +   + V  K++ G TPL    +  N  +   L+
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL--NSQVWSALQ 228
Query: 723 DAKSTQ 728
            +K+ Q
Sbjct: 229 MSKALQ 234

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 34/178 (19%)
Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMT 589
           IS   +E   ++  AA  GD+  ++ L    +  N  D +GR  +PLH AA      ++ 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
           +L+Q G D++ KD  G  PL  A  YG+   A LLVK GA +NV +   F          
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
                                TPLH AA++G Y + KLL++ GA    K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLL--VKEGASLNVE-EAGSFLCTAVARGDSDLLKR 654
           I+L ++  +  LLEA K G+      L  V+     ++E    + L  A       +++ 
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
           +L +G D + +D     PLH A S G Y +A+LLV+ GA V   D W  TPL E    G 
Sbjct: 65  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 124
Query: 715 KNLIKLL 721
             + KLL
Sbjct: 125 YEICKLL 131

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 33/187 (17%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA-GSFLCTAVARGDSDLLKRV 655
           D+N  D  G+TPL  A K G+     +L+K GA +N ++  GS                 
Sbjct: 72  DVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS----------------- 114
Query: 656 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 715
                          TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN+
Sbjct: 115 ---------------TPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 716 NLIKLLE 722
           +L ++L+
Sbjct: 160 DLAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/186 (29%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D+ G +PLHL  + G+ EI+  L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G TPL                                 A  RG  ++++ +L
Sbjct: 72  DVNASDKSGWTPLH-------------------------------LAAYRGHLEIVEVLL 100
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
             G D N  DY   TPLH+AA +G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 101 KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 31/183 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  LI  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D++  D +G TPL  A   G+     +L+K GA                           
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
               D N  D    TPLH+AA EG   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIK 719
           L K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + G  L  A   G  D ++ +++NG D N  D    TPLH+AA  G   + ++L++ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           V   D +G TPL    M G+  ++++L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N TD  G +PLHLAA+ G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N  D  G+TPL  A   G+     +L+K GA +N  +           GD        
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTW---------GD-------- 114
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
                         TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           AA  GD+  ++ L    +  N  D +GR  +PLH AA      ++ +L+Q G D++ KD 
Sbjct: 17  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
            G  PL  A  YG+   A LLVK GA +NV +   F                        
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------------------------ 111
Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
                  TPLH AA++G Y + KLL++ GA    K+R GNTPLD
Sbjct: 112 -------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710
           +++ +L +G D + +D     PLH A S G Y +A+LLV+ GA V   D W  TPL E  
Sbjct: 59  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 711 MCGNKNLIKLL 721
             G   + KLL
Sbjct: 119 AKGKYEICKLL 129

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 34/164 (20%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGR--SPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           AA  GD+  ++ L    +  N  D +GR  +PLH AA      ++ +L+Q G D++ KD 
Sbjct: 15  AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
            G  PL  A  YG+   A LLVK GA +NV +   F                        
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF------------------------ 109
Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
                  TPLH AA++G Y + KLL++ GA    K+R GNTPLD
Sbjct: 110 -------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710
           +++ +L +G D + +D     PLH A S G Y +A+LLV+ GA V   D W  TPL E  
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 711 MCGNKNLIKLL 721
             G   + KLL
Sbjct: 117 AKGKYEICKLL 127

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 31/186 (16%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
           D+N +D  G TPL  A   G+     +L+K GA +N ++A                    
Sbjct: 72  DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDA-------------------- 111
Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
             G+ P          LH+AA  G   + ++L++ GA V  +D++G T  D     GN++
Sbjct: 112 -YGLTP----------LHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 717 LIKLLE 722
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 549 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP 608
           H ++ +L  L+   A+PN     G +PLH+AA  G+ E +  L++K          G TP
Sbjct: 92  HTNMVKL--LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 149
Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 666
           L  A KYG    A LL++  A  N         L  AV   + D++K +L  G  P++  
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           ++  TPLH+AA +    +A+ L++ G S   +   G TPL      G+  ++ LL
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALL 264

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.9 bits (185), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N TD +G +PLHLAA+ G  EI+  L++ G D
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
           +N  D+ G TPL  A   G+     +L+K GA +N  +   +                  
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW------------------ 106
Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
                        TPLH+AA  G   + ++L++ GA V  +D  G T  D     G ++L
Sbjct: 107 -------------TPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
Query: 718 IKLLE 722
            ++L+
Sbjct: 154 AEILQ 158

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 634 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           ++ G  L  A A G  D ++ +++NG D N  D +  TPLH+AA+ G   + ++L++ GA
Sbjct: 4   QDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 694 SVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            V   D  G TPL      G+  ++++L
Sbjct: 64  DVNASDSAGITPLHLAAYDGHLEIVEVL 91

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 31/123 (25%)
Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
           +GR+PLHLAA  G+ E++  L++ G D+N KD  G TPL  A + G+     LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 631 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
                                         D N +D + RTPLH+AA  G   + KLL+E
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 691 AGA 693
           AGA
Sbjct: 90  AGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 643 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWG 702
           A   G  +++K +L  G D N +D + RTPLH+AA  G   + KLL+EAGA V  KD+ G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 703 NTPLDEGRMCGNKNLIKLLEDA 724
            TPL      G+  ++KLL +A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEA 90

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 59/99 (59%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           D+N +DNFG TPL  A   G+     +L+K GA +N ++
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N   E+  + L  A   G  ++++ +L  G D N  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
               TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           +++AA +G   +++ L+  GAD N    DG +PLHLAA  G+ EI+  L+ KG D+N + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
             GNTP   A K G+     LL  +GA +N    GS
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
           DG +PLH AA  G+ E +  L+ KG D+N +   GNTPL  A K G+             
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 631 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
                             ++++K +L+ G D N R  D  TP H+A   G + + KLL  
Sbjct: 55  ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 691 AGASVFPKDRWGNT 704
            GA V  +  WG++
Sbjct: 97  KGADVNARS-WGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           L  A   G ++ +K++LS G D N R  D  TPLH+AA  G   + KLL+  GA V  + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729
           + GNTP    +  G+  ++KLL DAK   +
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLL-DAKGADV 101

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/116 (37%), Positives = 71/116 (61%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N +++AG + L  A  RG  ++++ +L +G D N RD
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
              RTPLH+AA+ G   + ++L+E GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN  D   
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 68
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
            TPLL A+  G+     LL+ +GA   V+  G    TA+   D+  +K +L
Sbjct: 69  ITPLLSAVYEGHVSCVKLLLSKGADKTVK--GPDGLTALEATDNQAIKALL 117

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
           AD N +D  GR+PLHLAA+ G+ EI+  L++ G D+N +D FG T    +I  GN+  A 
Sbjct: 71  ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 623 LLVK 626
           +L K
Sbjct: 131 ILQK 134

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N +++AG + L  A  RG  ++++ +L +G D N  D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
              RTPLH+AA+ G   + ++L+E GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN  D   
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
            TPLL A+  G+     LL+ +GA   V+  G    TA    D+  +K +L
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTVK--GPDGLTAFEATDNQAIKALL 122

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
           AD N +D  GR+PLHLAA+ G+ EI+  L++ G D+N +D FG T    +I  GN+  A 
Sbjct: 71  ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 623 LLVK 626
           +L K
Sbjct: 131 ILQK 134

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N +++AG + L  A  RG  ++++ +L +G D N  D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
              RTPLH+AA+ G   + ++L+E GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+  +  K    L L    AA +  L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
           AD N  D DG +PLHLAA  G+ EI+  L++ G D+N +D FG T    +I  GN+  A 
Sbjct: 71  ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 623 LLVK 626
           +L K
Sbjct: 131 ILQK 134

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N  +    + L  A      ++++ +L +G D N  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
            D  TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S + ++R+K+  + +Y+   +L   +R++I+ +   +Y    + E  + +++  SIR  +
Sbjct: 5   SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
           +       +  VP F G  S F+ ++V  L  E F P + ++++G   D+++F+  G ++
Sbjct: 65  ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
              I  +G     + L   S FGE+ +L    +  +V+    C L  +  Q F  ++D
Sbjct: 125 --IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 33/202 (16%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL-------- 609
           L+  GA+ N+ D +G  PLH AAS GY +I  +LI +G  +   ++ G+TPL        
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151
Query: 610 -----LEAIKYGNDGAASLLVKEGASL----------------NVEEAGSFLCTAVARGD 648
                 E  + G D  A+   +E   L                + +  G+ L  A A+G 
Sbjct: 152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 708
           +++LK ++    D N +DYD  TPLH AA  G     ++LVE    +   ++ G T  D 
Sbjct: 212 TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD- 270
Query: 709 GRMCGNKNLIKLLEDAKSTQLL 730
                +++++  LE+ +  Q L
Sbjct: 271 ---VADEDILGYLEELQKKQNL 289

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 37/77 (48%)
Query: 637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
           G+    A + GD++ + R+L  G D N  + D  T LH A  +    M K LVE GA++ 
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 697 PKDRWGNTPLDEGRMCG 713
             D  G  PL     CG
Sbjct: 101 QPDNEGWIPLHAAASCG 117

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVK 626
           +N +D FG T    +I  GN+  A +L K
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQK 89

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/90 (36%), Positives = 54/90 (60%)
Query: 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + G  L  A   G  D ++ +++NG D N +D D  TPLH+AA EG   + ++L++AGA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
           V  +D++G T  D     GN++L ++L+ A
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 38/209 (18%)
Query: 528 ITFHISKHEA--ELALKVNSAAYH-----GDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           + ++ISK     +L   +NS   H     G L  +  L++ GADP+  D +G S +HLAA
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 581 SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFL 640
             G+  I+ +LI KG D+++ D  G TPL+ A                            
Sbjct: 118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA---------------------------- 149
Query: 641 CTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
             A      D  + +L+  +  N  D Y   T LH A   G   +  LL+EAGA+V  ++
Sbjct: 150 --AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN 207
Query: 700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQ 728
             G + LD  +   N  +I  L++A+  +
Sbjct: 208 IKGESALDLAKQRKNVWMINHLQEARQAK 236

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 5/124 (4%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+    +K E  L   +  A  HG L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLT-PLYLATAHGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
           AD N  D  G +PLHLAA  G+ EI   L++ G D+N +D FG T    +I  GN+  A 
Sbjct: 71  ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Query: 623 LLVK 626
           +L K
Sbjct: 131 ILQK 134

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N ++      L  A A G  ++++ +L NG D N  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
               TPLH+AA  G   +A++L++ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 616
           L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ + + G TPL+ A +  
Sbjct: 77  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 136
Query: 617 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674
            +G    L+   A +N V++ G S L  A A  + D    +L NG + + ++    TPL 
Sbjct: 137 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 196
Query: 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED---AKSTQL 729
           +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL++    +S QL
Sbjct: 197 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 6/178 (3%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 616
           L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ + + G TPL+ A +  
Sbjct: 44  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 103
Query: 617 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674
            +G    L+   A +N V++ G S L  A A  + D    +L NG + + ++    TPL 
Sbjct: 104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 163
Query: 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED---AKSTQL 729
           +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL++    +S QL
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 504 GRKVLTNLLQGKESDLR-LKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R L    +D+  +       L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHL----AAMLGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
           AD N T   GR+PLHLAA   + EI+  L++ G D+N +D FG T    +I  GN+  A 
Sbjct: 71  ADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Query: 623 LLVK 626
           +L K
Sbjct: 131 ILQK 134

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L   GA +N  +    + L  A   G  ++++ +L NG D N   
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
              RTPLH+AA      + ++L++ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 616
           L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ + + G TPL+ A +  
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 617 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674
            +G    L+   A +N V++ G S L  A A  + D    +L NG + + ++    TPL 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 3/168 (1%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 616
           L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ + + G TPL+ A +  
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135
Query: 617 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674
            +G    L+   A +N V++ G S L  A A  + D    +L NG + + ++    TPL 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195
Query: 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL+
Sbjct: 196 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R KI
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 69  INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++  + L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D  G +PLHLAA   + EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           D+N  D  G TPL     YG+     +L+K GA +N ++
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 609 LLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPNTRD 666
           LLEA + G D    +L+  GA +N E+      L  A      ++++ +L NG D N  D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
               TPLH+ A  G   + ++L++ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 40/193 (20%)
Query: 555 LEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
           +  L+  GA+ N T D  G + LHLAA     +    L+  G D N +DN G TPL  A+
Sbjct: 33  ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL 673
                G   +L++  A+                              + N R +D  TPL
Sbjct: 93  AADAMGVFQILLRNRAT------------------------------NLNARMHDGTTPL 122
Query: 674 HVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFP 733
            +AA   +  M + L+ A A +   D  G T L       N          ++  +L   
Sbjct: 123 ILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNN---------TEAVNILLMH 173
Query: 734 HGFQDTADKRNPT 746
           H  +D  D ++ T
Sbjct: 174 HANRDAQDDKDET 186

>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 317 LIVKGSKTEK--FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIP 373
           L+ +GS + +  +++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++ 
Sbjct: 1   LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELN 60
Query: 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433
             +R +I        +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF
Sbjct: 61  GPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYF 120
Query: 434 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
           +  G    V +   G ++    L   S FGE+S+L    +  +V+     RL  +   +F
Sbjct: 121 IQHGV---VSVLTKGNKEMK--LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNF 175
Query: 494 TNIIDIY 500
             +++ Y
Sbjct: 176 NEVLEEY 182

>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 4   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 63
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 64  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 121
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 122 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178

>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 89/181 (49%), Gaps = 11/181 (6%)
Query: 520 RLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA 579
           ++K++  D T+ + + + E    +N A ++ D+   + LI  GAD N  +    SP   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 580 ASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
            ++G  EI+ ++++    D+N  + +G   L+ A + G+     LL+++G   +++    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 639 FLCTAVARG---------DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689
           F  TA+              D++K ++ NG D + +D   RT +  A  +G   ++K+L 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 690 E 690
           +
Sbjct: 199 Q 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           +  D +G +PL++A      EI   LI +G DINL+++  ++P L A   G     + ++
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML 92
Query: 626 KEGA-SLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPL-------HV 675
           K     LN      G+ L  A  +G  D +K +L +G      D D +           V
Sbjct: 93  KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEAV 148
Query: 676 AASEGLYL---MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
              EG  L   + KLL+E GA    KD  G T +D     G   + K+L
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 3   SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 63  INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++  + L   S FGE+ +L    +   V+    CRL  +   +F  +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +E L+R GADP     +G +P  LAA  G  +++   + KG D+N  D +G T  +EA  
Sbjct: 55  VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114
Query: 615 YGNDGAASLLVKEGASLNVEE------------AGSFLCTAVARGDSDLLKRVLSN-GID 661
           YG   A   L K GA++N+                + L  A  +G  ++LK +L   G D
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 662 PNTRDYDLRTPL-HVAAS---EGLYLMAKLLVEAGASVFPKDRWGNTPL 706
            N  D   R  L H   S     +  +  LL++ GA V  +   G TPL
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 69  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           A+ A+ ++ A   G    ++ L+ + A PN+ D  G +PL  A S G+ E++  L+Q G 
Sbjct: 117 ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 633
            IN  +N GNT L EA+   +     LL+  GAS+ V
Sbjct: 177 SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA 620
           +G   N T  DG SPLH+AA  G  +++  L++ G +   ++     PL  A + G+   
Sbjct: 75  SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 621 ASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 678
              L+   A  N ++    + L  A + G  +L+  +L +G   N  +    T LH A  
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVI 194
Query: 679 EGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN--LIKLLE 722
           E    + +LL+  GASV   ++   T +D    C  +N  +++LL+
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVD----CAEQNSKIMELLQ 236

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD    D +G +PLHLAA  G+ E++  L++ G 
Sbjct: 4   SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLL 624
           D+N +D FG T    +I  GN+  A +L
Sbjct: 64  DVNAQDKFGKTAFDISIDNGNEDLAEIL 91

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + G  L  A   G  D ++ +++NG D   +D +  TPLH+AA  G   + KLL+EAGA 
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           V  +D++G T  D     GN++L ++L+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N  D  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 647
            TPLL A+   +     +L++ GA   +E    +  +  AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           +L V+  A  G++  L   I      N TD +G +PL  AA+ G   ++ FL+Q G D  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 659
           L            +  G + A SL                   A ++G +D++K +L  G
Sbjct: 64  L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 92
Query: 660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
           +D N  D++  TPL  A         K+L+E+GA    +   G   +D     G +++ +
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Query: 720 LLE 722
           ++E
Sbjct: 153 VIE 155

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N  D  G
Sbjct: 41  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 100
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 647
            TPLL A+   +     +L++ GA   +E    +  +  AVA G
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           +L V+  A  G++  L   I      N TD +G +PL  AA+ G   ++ FL+Q G D  
Sbjct: 2   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 659
           L            +  G + A SL                   A ++G +D++K +L  G
Sbjct: 62  L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 90
Query: 660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
           +D N  D++  TPL  A         K+L+E+GA    +   G   +D     G +++ +
Sbjct: 91  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 150
Query: 720 LLE 722
           ++E
Sbjct: 151 VIE 153

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 624 LVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 683
           LV  G+ +   + G  L  A   G  D ++ +++NG D   +D +  TPLH+AA  G   
Sbjct: 13  LVPRGSHMG-SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLE 71
Query: 684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           + KLL+EAGA V  +D++G T  D     GN++L ++L+
Sbjct: 72  VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 77/169 (45%), Gaps = 17/169 (10%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +E L+R GADP     +G +P  LAA  G  +++   + KG D+N  D +G T  +EA  
Sbjct: 75  VELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 134
Query: 615 YGNDGAASLLVKEGASLNVEE------------AGSFLCTAVARGDSDLLKRVLSN-GID 661
           YG   A   L K GA++N+                + L  A  +G  ++LK +L   G D
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 194
Query: 662 PNTRDYDLRTPL-HVAAS---EGLYLMAKLLVEAGASVFPKDRWGNTPL 706
            N  D   R  L H   S     +  +  LL++ GA V  +   G TPL
Sbjct: 195 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYG 616
           L+ A AD    D  GR+PLH A S   + +   L++ +  D++ + + G TPL+ A +  
Sbjct: 41  LLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLA 100
Query: 617 NDGAASLLVKEGASLN-VEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH 674
            +G    L+   A +N V++ G S L  A A  + D    +L NG + + ++    TPL 
Sbjct: 101 LEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLF 160
Query: 675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL++
Sbjct: 161 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 2/162 (1%)
Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           N  D   R+PL +A   G E  +  L++    +  KD  G+T L+ A+K    G A  L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 626 KEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 683
            +G+++N ++    + L  ++  G S++   +L +G + N R+ +  TPL VA+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725
           + K L+E GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N  D  G
Sbjct: 59  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 647
            TPLL A+   +     +L++ GA   +E    +  +  AVA G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 31/183 (16%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           +L V+  A  G++  L   I      N TD +G +PL  AA+ G   ++ FL+Q G D  
Sbjct: 20  SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 79
Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 659
           L            +  G + A SL                   A ++G +D++K +L  G
Sbjct: 80  L------------LGKGRESALSL-------------------ACSKGYTDIVKMLLDCG 108
Query: 660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
           +D N  D++  TPL  A         K+L+E+GA    +   G   +D     G +++ +
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 168
Query: 720 LLE 722
           ++E
Sbjct: 169 VIE 171

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           ++ AA HG    L  LI  G   N    D  SPLH A   G+   +  L++ G  +N   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGID 661
              +TPL  A   G+    +LL++ GAS+  E +  S +  A  RG  + +  +++ G +
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            + +   L TPL++A         K L+E+GA V  + +  ++PL       ++ L  LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 722 ED 723
            D
Sbjct: 186 MD 187

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
           AA+RG  E +T L+Q  V++N ++ FG T L + +K GN   A  L+  GA+ ++++   
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 639 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 695
           F  +  A   G  D L+ +L N  D N  D +   PLH+AA EG   + + LV+  AS V
Sbjct: 71  FAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             ++  G+T  D  R+ G   ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           AA +G     E L+RAG   + RT  D R+PLH+AAS G+  I+  L++ G D+N KD  
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAKDML 99
Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA----VARGDSDL 651
             T L  A ++ +     LL+K GA  +V     F  TA    +  G+ DL
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGA--DVHTQSKFCKTAFDISIDNGNEDL 148

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GA P  TD+ G SPLHLAA  G+      L++ GV 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS 657
            + +     TPL  A   G+     +L+K GA +N +               D+LK    
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK---------------DMLK---- 100
Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
                        T LH A       + +LL++ GA V  + ++  T  D     GN++L
Sbjct: 101 ------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 718 IKLLE 722
            ++L+
Sbjct: 149 AEILQ 153

>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D+R +I  +   +Y+   + E ++L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILSELNDPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G V  ++YF+  G   
Sbjct: 69  VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
             G+    +++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -AGVITKSSKEMK--LTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           + H  E  L +  A+  GD+  +E L++ G+DPN  D+ G +PLH A + G+ +++  L+
Sbjct: 6   TNHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 593 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN 632
           Q    +N      ++PL +A K G+     LL+  GAS N
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G DP  T++ G + LH+A+ +G    + +L+Q G D N+KD+ G TPL EA  +G+    
Sbjct: 1   GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 622 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 681
            LL++  A +N                               T  Y   +PLH AA  G 
Sbjct: 60  ELLLQHKALVN-------------------------------TTGYQNDSPLHDAAKNGH 88
Query: 682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727
             + KLL+  GAS    + +G  P+D       K+L+ L E  +S+
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 579 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 637
           AA+RG  +E+   L ++ V  +  + FG T L + + +G+   A  L+K+GAS NV++A 
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 638 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
             S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L    + +
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)
Query: 579 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 637
           AA+RG  +E+   L ++ V  +  + FG T L + + +G+   A  L+K+GAS NV++A 
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 638 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
             S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L    + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG----VDINLKDNFGNTPLLEAI 613
           L+ AGA P   D  G++  HLA        +  L+       +D+  ++  G T L  A+
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 614 KYGNDGAASLLVKEGA---SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR 670
                    LL++ GA   +++++   S L  AV      +++ +L +G + N + Y   
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710
           + LH A+  GL  + + LV +GA    K+   +TPL   R
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+ D  G  P+  A++ G+
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 618 DGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDP 662
               S L  E + L+  +A     L  A+ RG  DL+  +  + + P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 579 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 637
           AA+RG  +E+   L ++ V  +  + FG T L + + +G+   A  L+K+GAS NV++  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 638 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
             S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L  A + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 132
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             +D  G TPL+     G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159

>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y + ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQGKXFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +   PLF      F+   + +L  E F PG+ I+ +G +  + YF+  G   
Sbjct: 66  VNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKE--XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+ D  G  P+  A++ G+
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 618 DGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLL 652
               S L  E + L+  +A     L  A+ RG  DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 5/147 (3%)
Query: 579 AASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG 637
           AA+RG  +E+   L ++ V  +  + FG T L + + +G+   A  L+K+GAS NV++  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 638 --SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
             S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L  A + +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL 126
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             +D  G TPL+     G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 7/165 (4%)
Query: 510 NLLQG-KESDLRL--KQLQSDITFHISKHEAELALKVNSAAYHGDLYQL-EGLIRAGADP 565
           +LLQ  +E+DL    K L  +I         E AL    A+ H    Q+ E L+R GA+ 
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240
Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           N  + D  +PLH+AA R + ++M  L + G  +N  D+ G T L  A   G+     LL+
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300
Query: 626 KEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR 670
             G+  ++     F  TA   G+ + ++++LS      T D D R
Sbjct: 301 SYGSDPSIISLQGF--TAAQMGN-EAVQQILSESTPMRTSDVDYR 342

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 79/223 (35%), Gaps = 59/223 (26%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L++ GAD +  D  G  PLH A S G+ E+   L++ G  +N  D +  TPL EA     
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136
Query: 618 DGAASLLVKEGAS-----------------------LNVEEAGSFLCTAVARGDSDLLKR 654
               SLL+  GA                        L  E  G  L  A    D   +K+
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196
Query: 655 VLS------------------------------------NGIDPNTRDYDLRTPLHVAAS 678
            L+                                     G + N ++ D  TPLHVAA 
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256
Query: 679 EGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                + ++L + GA +   D  G T L    + G+    +LL
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
           AA+RG  E +T L+Q  V++N ++ FG T L + +K GN   A  L+  GA+ ++++   
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 639 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 695
           F  +  A   G  D L+ +L    D N  D +   PLH+AA EG   + + LV+  AS V
Sbjct: 71  FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             ++  G+T  D  R+ G   ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 2/182 (1%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           ++ AA HG    L  LI  G   N    D  SPLH A   G+   +  L++ G  +N   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGID 661
              +TPL  A   G+    +LL++ GAS+  E +  S +  A  RG  + +  +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            + +   L TPL++A         K L+E+GA V  + +  ++PL       ++ L  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLL 241
Query: 722 ED 723
            D
Sbjct: 242 MD 243

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
           AA+RG  E +T L+Q  V++N ++ FG T L + +K GN   A  L+  GA+ ++++   
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 639 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 695
           F  +  A   G  D L+ +L    D N  D +   PLH+AA EG   + + LV+  AS V
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             ++  G+T  D  R+ G   ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 4/147 (2%)
Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
           AA+RG  E +T L+Q  V++N ++ FG T L + +K GN   A  L+  GA+ ++++   
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 639 F--LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 695
           F  +  A   G  D L+ +L    D N  D +   PLH+AA EG   + + LV+  AS V
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             ++  G+T  D  R+ G   ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE-AG 637
           AA+RG  E +T L+Q  V++N ++ FG T L + +K GN   A  L+  GA+ ++++  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTG 70
Query: 638 SFLCTAVAR-GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-V 695
           + +    AR G  D L+ +L    D N  D +   PLH+AA EG   + + LV+  AS V
Sbjct: 71  NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             ++  G+T  D  R+ G   ++ L++
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +E LI  GA  N  +    +PLHLAAS G+ +I+  L+Q   DIN  +  GN PL  A  
Sbjct: 50  VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 109
Query: 615 YGNDGAASLLVKEGASLNV 633
           +G D  A  LV  GA +++
Sbjct: 110 WGQDQVAEDLVANGALVSI 128

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTAVARGDSDLLKR 654
           D+N  D+ G +PL  A + G      +L+  GA +NV   G  + L  A + G  D++++
Sbjct: 26  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710
           +L    D N  +     PLH A   G   +A+ LV  GA V   +++G  P+D+ +
Sbjct: 86  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 555 LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK 614
           +E LI  GA  N  +    +PLHLAAS G+ +I+  L+Q   DIN  +  GN PL  A  
Sbjct: 55  VEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 114
Query: 615 YGNDGAASLLVKEGASLNV 633
           +G D  A  LV  GA +++
Sbjct: 115 WGQDQVAEDLVANGALVSI 133

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTAVARGDSDLLKR 654
           D+N  D+ G +PL  A + G      +L+  GA +NV   G  + L  A + G  D++++
Sbjct: 31  DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 90
Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR 710
           +L    D N  +     PLH A   G   +A+ LV  GA V   +++G  P+D+ +
Sbjct: 91  LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A+  G++  +  L+  GADP+    +  S L LA++ GY +I+  L+++ VDIN+ D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 647
            TPLL A++  +      L+  GA L  E    +  +  AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 576 LHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV- 633
           +H  A++G  + +   ++KG + +N  D  G TPL+ A  +G       L++ GA  ++ 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 634 -EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
            +E  S L  A   G +D++  +L   +D N  D++  TPL  A         + L+  G
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           A +  +   G TP+D     G + + +++E+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 623
           + D DGR PLH + S    EI +FL+ K  ++NL    D+ G TP   A   GN      
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 624 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 679
           L    +K   +    +  + L  AV +   ++ + ++ NG     +D   + PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 680 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 706
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 623
           + D DGR PLH + S    EI +FL+ K  ++NL    D+ G TP   A   GN      
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 624 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 679
           L    +K   +    +  + L  AV +   ++ + ++ NG     +D   + PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 680 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 706
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKYGNDGAASL 623
           + D DGR PLH + S    EI +FL+ K  ++NL    D+ G TP   A   GN      
Sbjct: 31  QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS 90
Query: 624 L----VKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASE 679
           L    +K   +    +  + L  AV +   ++ + ++ NG     +D   + PLH AAS 
Sbjct: 91  LYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV 150
Query: 680 GLYLMAKLLVEAGAS-VFPKDRWGNTPL 706
           G   + +LL   G S V  +D+ G TPL
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A+  G++  +  L+  GADP+    +  S L LA++ GY +I+  L+++ VDIN+ D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARG 647
            TPLL A+   +      L+  GA L  E    +  +  AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 576 LHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV- 633
           +H  A++G  + +   ++KG + +N  D  G TPL+ A  +G       L++ GA  ++ 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 634 -EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
            +E  S L  A   G +D++  +L   +D N  D++  TPL  A         + L+  G
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           A +  +   G TP+D     G + + +++E+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 510 NLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD 569
           +L  GK ++LR K     I   +      LAL ++S+   G+   ++ +I    DP+  +
Sbjct: 10  SLPPGKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPN 67
Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA 629
            +G + LH A   G+ EI+ FL+Q GV++N  D+ G TPL  A    N      LV+ GA
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 630 SL 631
           ++
Sbjct: 128 AV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 630 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689
           SL  +E  + L  AV  G ++++K ++  G++ N  D D  TPLH AAS     + K LV
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 690 EAGASVF 696
           E+GA+VF
Sbjct: 124 ESGAAVF 130

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697
           + L  +   G+ DL++R++    DP+  + +  T LH A   G   + K LV+ G +V  
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTR----KCTVFP 753
            D  G TPL     C N  + K L ++ +          Q  ADK         +C+ F 
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 754 FHPWDAKESRRHGIV--LWI--PQNIKDLIKTAAEQLDFRGGDCI 794
           +   +       G++  LW   PQN         ++L  + GDC+
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN--------DDELPMKEGDCM 195

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 510 NLLQGKESDLRLKQLQSDITFH---ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN 566
           +L  GK ++LR  +  S+   H   +  +   LAL ++S+   G+   ++ +I    DP+
Sbjct: 8   SLPPGKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPS 64
Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVK 626
             + +G + LH A   G+ EI+ FL+Q GV++N  D+ G TPL  A    N      LV+
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 627 EGASL 631
            GA++
Sbjct: 125 SGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 630 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV 689
           SL  +E  + L  AV  G ++++K ++  G++ N  D D  TPLH AAS     + K LV
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 690 EAGASVF 696
           E+GA+VF
Sbjct: 124 ESGAAVF 130

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697
           + L  +   G+ DL++R++    DP+  + +  T LH A   G   + K LV+ G +V  
Sbjct: 39  ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTR----KCTVFP 753
            D  G TPL     C N  + K L ++ +          Q  ADK         +C+ F 
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 754 FHPWDAKESRRHGIV--LWI--PQNIKDLIKTAAEQLDFRGGDCI 794
           +   +       G++  LW   PQN         ++L  + GDC+
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN--------DDELPMKEGDCM 195

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-----NF-GNTPL 609
           E L+ AG DP   D+ G +PLHLA  +G    +  L Q     +L       N+ G+T L
Sbjct: 59  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 118
Query: 610 LEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
             A  +G  G   LLV  GA +N +E     + L  AV   + DL+  +L  G D N   
Sbjct: 119 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 178
Query: 667 YDLRTPLHV 675
           Y   +P  +
Sbjct: 179 YQGYSPYQL 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-----NF-GNTPL 609
           E L+ AG DP   D+ G +PLHLA  +G    +  L Q     +L       N+ G+T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 610 LEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
             A  +G  G   LLV  GA +N +E     + L  AV   + DL+  +L  G D N   
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181
Query: 667 YDLRTPLHV 675
           Y   +P  +
Sbjct: 182 YQGYSPYQL 190

>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE--SSYTEASVLQDIPISIRAK 379
           S+   +  +  DL  +I  +RL + +  +++   +  +   +    + +L+D P  +RA 
Sbjct: 9   SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRAD 68
Query: 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
           I+  L    ++ +PLF+  S   +  + + +   F  PGE ++ +G+ +  +YFVC G +
Sbjct: 69  IAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
Query: 440 E 440
           E
Sbjct: 128 E 128

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 576 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           L  AA+RG  E +  L++ G D N  + FG  P+ + +  G+   A LL+  GA  N   
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPN--- 71
Query: 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
                C                   DP T    L  P+H AA EG      +L  AGA +
Sbjct: 72  -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
              D WG  P+D     G++++ + L  A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 31/149 (20%)
Query: 576 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           L  AA+RG  E +  L++ G + N  +++G  P+ + +  G+   A LL+  GA  N   
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--- 71
Query: 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
                C                   DP T    L  P+H AA EG      +L  AGA +
Sbjct: 72  -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
             +D WG  P+D     G++++ + L  A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611
           L   E L++ GA+ N+ D  GR PLH A   G+  +    +++G D+  +D+ G  PL  
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 612 AIKYGNDGAASLL 624
           A++  N    +LL
Sbjct: 308 AMETANADIVTLL 320

>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20 Structures Length = 156

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 31/149 (20%)
Query: 576 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           L  AA+RG  E +  L++ G   N  +++G  P+ + +  G+   A LL+  GA  N   
Sbjct: 16  LATAAARGRVEEVRALLEAGALPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPN--- 71
Query: 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
                C                   DP T    L  P+H AA EG      +L  AGA +
Sbjct: 72  -----CA------------------DPAT----LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
             +D WG  P+D     G++++ + L  A
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA 133

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611
           L   E L++ GA+ N+ D  GR PLH A   G+  +    +++G D+  +D+ G  PL  
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 612 AIKYGNDGAASLL 624
           A++  N    +LL
Sbjct: 308 AMETANADIVTLL 320

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE 611
           L   E L++ GA+ N+ D  GR PLH A   G+  +    +++G D+  +D+ G  PL  
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTI 307
Query: 612 AIKYGNDGAASLL 624
           A++  N    +LL
Sbjct: 308 AMETANADIVTLL 320

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNF 604
           A  HG +  ++ L+   AD N  D DG + L  A   G++EI   L+     DI+L D  
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 605 GNTPLLEAIKYGNDGAASLL 624
           G+T L+ A+  G    AS+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269

>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent Protein Kinase Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL-- 439
           + ++  +IE VPLFK        +IV  + E+ +  GE I+ +G   D  Y +  G++  
Sbjct: 155 RKMFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSI 214
Query: 440 ---EEVGIEENG--TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
               +    +NG   E  +++ H    FGE++++ N P+  +       + L +D Q+F 
Sbjct: 215 LIRSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFE 274
Query: 495 NII 497
            ++
Sbjct: 275 RLL 277

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 558 LIRAGADPNRTDYDGRSPLH-LAASRGYEEIMTFLIQ---KGVDINLKDNFGNTPL-LEA 612
           L +AGADP   +   RS LH  AA+R +   +  L     KG DI   D  G T L + A
Sbjct: 185 LXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKG-DIEELDRNGXTALXIVA 243
Query: 613 IKYGNDGAAS--LLVKEGASLNVEEAG----------SFLCTAVARGDSDLLKRVLS-NG 659
              G D  AS  LLV++GA ++ + A           + L  A    +  ++K ++   G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKG 303
Query: 660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
            + + +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N++ 
Sbjct: 304 SNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 363
Query: 720 LLE 722
           + +
Sbjct: 364 IFD 366

>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 161

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 45  LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 103
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147

>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 164

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 51  LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 109
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153

>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of Pka Length = 246

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 405 QIVIRLHEEFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY------VSYLH 457
           ++VI   EE  +P G  I+++G+  D  Y V           E GT D+      V+   
Sbjct: 24  RLVINCLEEKSVPKGATIIKQGDQGDYFYVV-----------EKGTVDFYVNDNKVNSSG 72
Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
           P SSFGE++++ N P+  TV     C L  +D+ +F  I+
Sbjct: 73  PGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 21/155 (13%)
Query: 573 RSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 631
            SPL LAA     + ++ L++ +G +++ +   G T L  A  Y N  AA +L++    L
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 632 NVE-------EAGSFLCTAVARGDSDLLKRVLSNGID-------------PNTRDYDLRT 671
             E       E  + L  AV   + +L++ +L+ G               P+   Y    
Sbjct: 64  VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 672 PLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 706
           PL  AA  G   + +LL+E GA +  +D  GNT L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
                  SFGE++++ N P+  T+       L  +D+ +F  II       RK+  + ++
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270

>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
                  SFGE++++ N P+  T+       L  +D+ +F  II       RK+  + ++
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIE 270

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G+L  ++  ++   DP++ + +G + LH A       I+ FLI  G ++N  D+ G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 606 NTPLLEAIKYGNDGAASLLVKEGASL 631
            TPL  A    +      LV+ GA++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	821
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	3e-49
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-45
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-39
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-12
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	1e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-44
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-24
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-41
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-41
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-35
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-33
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-41
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-31
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-40
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-34
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-36
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-31
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-40
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-10
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	2e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-40
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-33
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-39
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-25
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-39
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-36
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-33
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-31
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-38
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-30
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-38
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-38
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-38
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-31
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-26
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-37
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-36
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-31
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-35
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-29
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-28
2rfa_A	232	Transient receptor potential cation channel subfa	1e-33
2rfa_A	232	Transient receptor potential cation channel subfa	3e-29
2rfa_A	232	Transient receptor potential cation channel subfa	6e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-33
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-30
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-30
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-28
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-30
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	5e-28
2pnn_A	273	Transient receptor potential cation channel subfa	2e-23
2pnn_A	273	Transient receptor potential cation channel subfa	8e-21
2pnn_A	273	Transient receptor potential cation channel subfa	1e-11
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	1e-27
2etb_A	256	Transient receptor potential cation channel subfam	5e-26
2etb_A	256	Transient receptor potential cation channel subfam	1e-25
2etb_A	256	Transient receptor potential cation channel subfam	5e-22
2etb_A	256	Transient receptor potential cation channel subfam	8e-16
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	1e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-22
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	4e-20
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	4e-20
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	2e-19
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	5e-19
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	9e-19
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	2e-18
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	3e-18
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-18
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-15
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	4e-18
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	8e-18
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	3e-15
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-18
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	2e-17
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-17
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-08
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	5e-17
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	8e-17
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-13
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	1e-15
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	1e-15
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	3e-15
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	5e-15
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	5e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-15
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-14
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	1e-14
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	2e-14
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	2e-14
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	5e-14
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-11
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	4e-13
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	5e-13
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	7e-13
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	1e-12
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	8e-13
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	2e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	2e-11
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	1e-10
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	1e-10
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	3e-10
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	3e-10
1lnq_A	336	MTHK channels, potassium channel related protein;	2e-09
1ft9_A	222	Carbon monoxide oxidation system transcription reg	6e-09
3ouf_A	97	Potassium channel protein; ION channel, membrane,	4e-08
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	4e-08
2q67_A	114	Potassium channel protein; inverted teepee, helix	6e-08
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	6e-08
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	7e-08
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	1e-07
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	2e-07
1xl4_A	301	Inward rectifier potassium channel; integral membr	3e-07
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	4e-06
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	5e-06
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	8e-06
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-05
3b02_A	195	Transcriptional regulator, CRP family; structural	3e-05
3sya_A	340	G protein-activated inward rectifier potassium CH;	4e-05
2a9h_A	155	Voltage-gated potassium channel; potassium channel	4e-05
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	4e-05
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	8e-05
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	2e-04
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	2e-04
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	4e-04
3um7_A	309	Potassium channel subfamily K member 4; potassium	6e-04
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	7e-04

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  171 bits (435), Expect = 3e-49
 Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 312 GNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQ 370
           G M       S + ++R+K+  + +Y+   +L   +R++I+ +   +Y      E  + +
Sbjct: 1   GAMD------SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFR 54

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           ++  SIR  ++       +  VP F G  S F+ ++V  L  E F P + ++++G   D+
Sbjct: 55  EVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDR 114

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           ++F+  G ++ +    +G     + L   S FGE+ +L    +  +V+    C L  +  
Sbjct: 115 MFFIQQGIVDIIM--SDGVI--ATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSV 170

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQL 524
           Q F  ++D +    + +       + +  RL ++
Sbjct: 171 QHFNQVLDEFPAMRKTME------EIAVRRLTRI 198

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  167 bits (424), Expect = 1e-47
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+     E S+L ++   +R KI
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65

Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G + 
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            +        +    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 126 VL-----TKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  167 bits (425), Expect = 4e-45
 Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 6/185 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA    +     L++ G   N     G +PLHLAA  G+ E++  L+ K  + NL +  G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGID 661
            TPL    + G+   A +L+K G    V+       T    A   G+  L+K +L +  D
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGV--MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            N +     +PLH AA +G   +  LL++ GAS       G TPL   +  G  ++  +L
Sbjct: 337 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396

Query: 722 EDAKS 726
           +    
Sbjct: 397 KVVTD 401

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  164 bits (418), Expect = 4e-44
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 2/178 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A++ G L  ++ L++ GA PN ++    +PLH+AA  G+ E+  +L+Q    +N K    
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPN 663
            TPL  A + G+     LL++  A+ N+        L  A   G  + +  +L       
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                  TPLHVAA  G   +A+LL+E  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  157 bits (400), Expect = 8e-42
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 6/180 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G +  +  L+   A        G +PLH+AA  G   +   L+++    N     G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGID 661
            TPL  A+ + N     LL+  G   +           L  A  +   ++ + +L  G  
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGG--SPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            N       TPLH+AA EG   M  LL+   A+    ++ G TPL      G+  +  +L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  155 bits (394), Expect = 6e-41
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 6/164 (3%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G         G +PLH+A+  G+  I+  L+Q+G   N+ +    TPL  A + G+   A
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 622 SLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
             L++  A   V        T    A   G ++++K +L N  +PN       TPLH+AA
Sbjct: 64  KYLLQNKA--KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 678 SEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            EG       L+E  AS     + G TPL      G   + +LL
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (378), Expect = 6e-39
 Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 9/169 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G    +  L+   A+ N  +  G +PLHL A  G+  +   LI+ GV ++     G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGID 661
            TPL  A  YGN      L++  A  +V          L  A  +G +D++  +L NG  
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS 369

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLL---VEAGASVFPKDRWGNTPLD 707
           PN    D  TPL +A   G   +  +L    +  + V   D+   +  +
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (269), Expect = 1e-24
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 2/130 (1%)

Query: 594 KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDL 651
            G+        G TPL  A   G+      L++ GAS NV        L  A   G +++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 652 LKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM 711
            K +L N    N +  D +TPLH AA  G   M KLL+E  A+       G+TPL     
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 712 CGNKNLIKLL 721
            G+   +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 9e-12
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
           S GI          TPLHVA+  G   + K L++ GAS    +    TPL      G+  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 717 LIKLL 721
           + K L
Sbjct: 62  VAKYL 66

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  159 bits (403), Expect = 1e-44
 Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 310 LIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEAS 367
           +   M       S+   +  +  DL  +I  +RL + +  +++   +  +  +     + 
Sbjct: 3   MDQRMY------SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSE 56

Query: 368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNV 427
           +L+D P  +RA I+  L    + ++PLF+  S   +  + + +   F  PGE ++ +G+ 
Sbjct: 57  LLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDA 115

Query: 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT--VQVCELCRL 485
           +  +YFVC G +E +          ++ L      G  S+           V+    C L
Sbjct: 116 LQAIYFVCSGSMEVL-----KDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDL 170

Query: 486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLR 520
             I  +    ++ +Y    +K ++ +      +LR
Sbjct: 171 QYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  161 bits (409), Expect = 2e-44
 Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 2/177 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA HG    L  LI  G   N    D  SPLH A   G+   +  L++ G  +N      
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-LCTAVARGDSDLLKRVLSNGIDPNT 664
           +TPL  A   G+    +LL++ GAS+  E   +  +  A  RG  + +  +++ G + + 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +   L TPL++A         K L+E+GA V  + +  ++PL       ++ L  LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  136 bits (344), Expect = 8e-36
 Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A   G    +  L++ GA       D  SP+H AA RG+ E +  LI  G +I+ K +  
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAG-SFLCTAVARGDSDLLKRVLSNGIDPNT 664
            TPL  A +         L++ GA +N  +   S L   V     +L   ++  G D   
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
           ++ + + P+ +   E   L    L   GAS+
Sbjct: 251 KNAEGKRPVELVPPES-PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  135 bits (343), Expect = 1e-35
 Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 38/211 (18%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-------------------------------YDGRS 574
            + H   +   GL+  G+     D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE 634
           P+H AA  G++  +  LI +G  +N+      +PL EA   G+     +L+K GA   V 
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA--QVN 119

Query: 635 EAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
              +     L  A   G  D +  +L +G        DL +P+H AA  G       L+ 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIA 178

Query: 691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            G ++  K     TPL        +  +K L
Sbjct: 179 YGGNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 3e-24
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 10/149 (6%)

Query: 578 LAASRGYEEIMTFLIQKGVDINLKDNF-----GNTPLLEAIKYGNDGAASLLVKEGASLN 632
           + +S  +    + L+ +G  +   D       G+ P       G       L+      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPLMGD 55

Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
                S +  A   G    L+ ++S G   N    D  +PLH A   G     K+L++ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A V       +TPL    + G+ + + LL
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 95.3 bits (238), Expect = 8e-22
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  +     ++ L+ +GAD N+      SPLH       EE+   L+  G D   K+  G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLN 632
             P+          A   L +EGASL 
Sbjct: 256 KRPVELVPPESPL-AQLFLEREGASLP 281

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  151 bits (383), Expect = 1e-41
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G +     L++AGA+ +    D R+PL  AA   + E + +LI+ G  ++ KD  G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGID 661
           +T L  A K G+      L+  G   +V        T    A      DL+K +LS G D
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            N RD +    LH AA  G   +A++L+ A   +   +  G++PL         + + L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  138 bits (351), Expect = 3e-37
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 7/164 (4%)

Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAAS 622
            +      + RSPLH AA  G+ +I   L+Q G +I+       TPL+EA +  +  A  
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 623 LLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAA 677
            L+K GA   V+   +   T    A  +G  ++++ +LSNG +D N +D    TP+  A 
Sbjct: 62  YLIKAGA--LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119

Query: 678 SEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                 + KLL+  G+ +  +D   N  L      G  ++ ++L
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (334), Expect = 7e-35
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 32/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           AA  G    ++ L+  G  D N  D  G +P+  A    + +++  L+ KG DIN++DN 
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
            N  L  A   G    A +L                               L+   D + 
Sbjct: 144 ENICLHWAAFSGCVDIAEIL-------------------------------LAAKCDLHA 172

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            +    +PLH+AA E  Y    L +   + V  K++ G TPL    +         +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  116 bits (294), Expect = 2e-29
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  +  +  ++ L+  G+D N  D +    LH AA  G  +I   L+    D++  +  G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           ++PL  A +        L                                LS   D   +
Sbjct: 178 DSPLHIAARENRYDCVVLF-------------------------------LSRDSDVTLK 206

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           + +  TPL  A+       A  + +A  
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  147 bits (374), Expect = 4e-41
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 546 AAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
            A  G+L QL+  +R G +  N+ D  G +PL  A++ G  E + FL++ G D ++    
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
             + L  A   G      LL++     ++        T    AV       ++ +L+ G 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDV--DINIYDWNGGTPLLYAVRGNHVKCVEALLARGA 126

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 705
           D  T      TP+ +A + G   + +++      +F  +     P
Sbjct: 127 DLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  124 bits (314), Expect = 5e-33
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
               +H  A++G  + +   ++KG + +N  D  G TPL+ A  +G       L++ GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA- 60

Query: 631 LNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAK 686
            +           L  A   G +D++  +L   +D N  D++  TPL  A         +
Sbjct: 61  -DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            L+  GA +  +   G TP+D     G + + +++E+ 
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  148 bits (377), Expect = 9e-41
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 13/189 (6%)

Query: 546 AAYHGD----LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  H +    +  +  +    A  N  +   ++PLHLA      EI   L+  G D  L+
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE---EAGSF-----LCTAVARGDSDLLK 653
           D  GNTPL  A + G   +  +L +   + ++    +A ++     L  A   G   +++
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 654 RVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
            ++S G D N ++  + RT LH+A       +  LL++ GA V      G +P       
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194

Query: 713 GNKNLIKLL 721
            +  + + L
Sbjct: 195 PSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  122 bits (308), Expect = 2e-31
 Identities = 36/185 (19%), Positives = 54/185 (29%), Gaps = 41/185 (22%)

Query: 546 AAYHGDLYQLEGLIRAGADP------NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A   G L  +  L ++   P        T+Y+G + LHLA+  GY  I+  L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 600 LKDNF-GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSN 658
            ++   G T L  A+   N    SLL                               L  
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLL-------------------------------LKC 173

Query: 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI 718
           G D N   Y   +P  +        + + L +                            
Sbjct: 174 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

Query: 719 KLLED 723
              ED
Sbjct: 234 ---ED 235

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 601 KDNFGNTPLLEAIKYGNDGAAS----LLVKEGASLNVEEAGSFLCT----AVARGDSDLL 652
               G++ L  AI +            +  + A   +    +   T    AV     ++ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP------KDRWGNTPL 706
           + +L  G DP  RD+   TPLH+A  +G      +L ++  +          +  G+T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121

Query: 707 DEGRMCGNKNLIKLL 721
               + G   +++LL
Sbjct: 122 HLASIHGYLGIVELL 136

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  148 bits (377), Expect = 1e-40
 Identities = 41/187 (21%), Positives = 73/187 (39%), Gaps = 11/187 (5%)

Query: 546 AAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A   G+L      +    + G + +  +   ++PLHLA       ++  L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGAS--LNVEEAGSFLCT----AVARGDSDLLKRV 655
           D  G T    A ++ +      L+   A   L++E       T    AV     + ++ +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 656 LSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
           L  G D +  D    R+PL  A       M +LL++ GA+V  +   G++ L      G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 715 KNLIKLL 721
             L++ L
Sbjct: 196 LPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 5e-34
 Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 36/181 (19%)

Query: 546 AAYHGDLYQLEGLIRAGA----DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  H     L  L+ + A    D    +YDG + LH+A +   +E +  L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 602 D-NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI 660
           D   G +PL+ A++  +     LL                               L +G 
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLL-------------------------------LQHGA 174

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720
           + N + Y   + LH A+  GL  + + LV +GA    K+   +TPL   R     ++++ 
Sbjct: 175 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234

Query: 721 L 721
            
Sbjct: 235 K 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (287), Expect = 1e-28
 Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A        ++ L+  GAD +  D   GRSPL  A       ++  L+Q G ++N +   
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G++ L  A   G       L                               + +G D + 
Sbjct: 183 GSSALHSASGRGLLPLVRTL-------------------------------VRSGADSSL 211

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           ++    TPL VA S  +  + +      AS
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 8e-20
 Identities = 28/136 (20%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLV----KEGASLNVEEAGSFLCT----AVARGDS 649
               D  G+TPL  A+  GN  A   LV    + G    ++   +   T    AV     
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLP 59

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP----KDRWGNTP 705
            +++ +++ G  P   D   +T  H+A         + L+++ A        ++  G T 
Sbjct: 60  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

Query: 706 LDEGRMCGNKNLIKLL 721
           L        +  ++LL
Sbjct: 120 LHVAVNTECQETVQLL 135

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  148 bits (374), Expect = 1e-40
 Identities = 59/179 (32%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
            AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N KD+ 
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDP 662
           G +PL  A   G D     L+ +GA +N         L  A ++   ++   +L  G +P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           + +D+   T +H AA++G   M  +L+   AS   +D  GNTPL            K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  135 bits (341), Expect = 4e-36
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 4/178 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A   G    +E L++ G   N  D  G SPLH+AAS G +EI+  L+ KG  +N  +  G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPN 663
            TPL  A        A +L++ GA+ + ++      +  A A+G+  ++  +L      N
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            +D +  TPLH+A  E     AK LV  GAS++ +++   TPL   +  G   LI   
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  121 bits (304), Expect = 4e-31
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 6/155 (3%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
                 +LA S   +E+   ++         D    T L  A   G+      L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV- 64

Query: 631 LNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAK 686
             V +      +    A + G  +++K +L  G   N  + +  TPLH AAS+  + +A 
Sbjct: 65  -PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +L+E GA+   KD +  T +      GN  ++ +L
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.2 bits (221), Expect = 4e-20
 Identities = 33/121 (27%), Positives = 58/121 (47%)

Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           ++ AA          L+  GA+P+  D+   + +H AA++G  +++  L+      N++D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDP 662
             GNTPL  A        A  LV +GAS+ +E         VA+G   L+ + L+ G + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229

Query: 663 N 663
           +
Sbjct: 230 S 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 6e-17
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 600 LKDNFGNTPLLE-AIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKR 654
           ++    N  +   A     D     ++ + +            T    A + G +++++ 
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
           +L  G+  N +D    +PLH+AAS G   + K L+  GA V   ++ G TPL        
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 715 KNLIKLL 721
             +  +L
Sbjct: 119 HEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 12/98 (12%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
            G   + ++L   ++   ++  + +   H+             A     + + + L+  G
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHL-------------ACDEERVEEAKFLVTQG 195

Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           A     + + ++PL +A   G   ++   + +G + ++
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  150 bits (381), Expect = 2e-40
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A    ++  ++ L+  GA+ N+ D +G  PLH AAS GY +I  +LI +G  +   ++ G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           +TPL  A +   +      V     +++E A             D  + + S  I+    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQG-VDIEAA---RKEEERIMLRDARQWLNSGHINDVRH 195

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                T LHVAA++G   + KLL++A   V  KD  G TPL      G +   ++L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  136 bits (344), Expect = 1e-35
 Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 12/180 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A   GD  ++  L+  GAD N  + DG + LH A      +++ FL++ G +IN  DN G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGID 661
             PL  A   G    A  L+ +GA  +V    S     L  A      +LL+  ++    
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGA--HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-- 162

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                 D+           L    + L     +     + G T L      G   ++KLL
Sbjct: 163 ----GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  129 bits (326), Expect = 3e-33
 Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 7/157 (4%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 628
           D   +    L    G E  +   + K     +K + G    L A   G+      L++ G
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERG 63

Query: 629 ASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 684
           A  ++  A     T    A    + D++K ++ NG + N  D +   PLH AAS G   +
Sbjct: 64  A--DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121

Query: 685 AKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A+ L+  GA V   +  G+TPLD       + L++  
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  128 bits (323), Expect = 7e-33
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 13/180 (7%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
             + G    LE  +           DG      A S G  E +  L+++G DIN  +  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGID 661
            T L +A    N      LV+ GA  N+ +  +        A + G  D+ + ++S G  
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGA--NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH 131

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
               + +  TPL +A  E +  + +  V         D        E      ++  + L
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG----VD--IEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (309), Expect = 5e-31
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 31/166 (18%)

Query: 528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
           +   +++   ++                + L     +  R    G + LH+AA++GY E+
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214

Query: 588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG 647
           +  LIQ   D+N+KD  G TPL  A  +G + A  +L                       
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL----------------------- 251

Query: 648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693
                   + N  D    +   +T   VA  + L  + +L  +   
Sbjct: 252 --------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  111 bits (281), Expect = 2e-27
 Identities = 33/178 (18%), Positives = 49/178 (27%), Gaps = 37/178 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A        L+  +      NR   D  +           +   +L    ++       G
Sbjct: 146 AEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            T L  A   G      LL                               +    D N +
Sbjct: 200 GTALHVAAAKGYTEVLKLL-------------------------------IQARYDVNIK 228

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           DYD  TPLH AA  G     ++LVE    +   ++ G T  D         L +L + 
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (259), Expect = 2e-24
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVL 656
           + + D             G++      V +     V+ + G+    A + GD++ + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKN 716
             G D N  + D  T LH A  +    M K LVE GA++   D  G  PL     CG  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 717 LIKLL 721
           + + L
Sbjct: 121 IAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.5 bits (153), Expect = 1e-10
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           AA+ G       L+    D    +  G++   +A       +     ++ +  + K  
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  145 bits (367), Expect = 2e-40
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           S+    VLQ  P  +RA I   L     ++ P F+  S   +  + +        PG++I
Sbjct: 2   SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC--NIPQPYTVQV 479
              G  VD L FV  G LE +       ++ V+ L     FG+V             V+ 
Sbjct: 62  YHAGESVDSLCFVVSGSLEVI-----QDDEVVAILGKGDVFGDVFWKEATLAQSCANVRA 116

Query: 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512
              C L  I + +   +++ Y         NL+
Sbjct: 117 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (373), Expect = 3e-40
 Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 9/183 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN-F 604
           A  +G   +   L+ AG D  + D +  + LH AA     +++ + I KG  ++      
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
            +TPL  A + G+      L+K GA  +        C+    A   G + ++  +++ G 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGA--DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133

Query: 661 DPNTRDYDLRTPLHVAASEGLYL-MAKLLVEAGASVFPKDRW-GNTPLDEGRMCGNKNLI 718
           D +  D +  TPL  AA     +   +LL+    SV   D++  NT L    + GN  +I
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVI 193

Query: 719 KLL 721
            LL
Sbjct: 194 SLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  141 bits (357), Expect = 5e-38
 Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 31/181 (17%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A   G L  +  L++ GADP+  D +G S +HLAA  G+  I+ +LI KG D+++ D  G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL+ A    +            S++                  LL   L+  +  N  
Sbjct: 143 MTPLMWAAYRTH------------SVDPTR---------------LL---LTFNVSVNLG 172

Query: 666 D-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
           D Y   T LH A   G   +  LL+EAGA+V  ++  G + LD  +   N  +I  L++A
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 725 K 725
           +
Sbjct: 233 R 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  129 bits (327), Expect = 6e-34
 Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 7/146 (4%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
              D      +  A   G  E    L++ G D+   D    T L  A            +
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 626 KEGASLNVEEAGSF-----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 680
            +GA   V++ G       L  A  +G   ++ +++  G DP+  D +  + +H+AA  G
Sbjct: 63  SKGA--IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120

Query: 681 LYLMAKLLVEAGASVFPKDRWGNTPL 706
              +   L+  G  V   D+ G TPL
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLK 653
           +   D++    +++A +YG       LV+ G   +V +      T    A      DL+K
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGY--DVRQPDKENVTLLHWAAINNRIDLVK 59

Query: 654 RVLSNGIDPNTRDYDL-RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
             +S G   +    DL  TPLH A  +G   M   L++ GA     D  G + +      
Sbjct: 60  YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQF 119

Query: 713 GNKNLIKLL 721
           G+ +++  L
Sbjct: 120 GHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           A   G+   +  L+ AGA+ +  +  G S L LA  R    ++  L +        +
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  145 bits (369), Expect = 5e-40
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 11/186 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A         E L       +  D +G +PL++A      EI   LI +G DINL+++  
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGI- 660
           ++P L A   G     + ++K     ++ +   +    L  A  +G  D +K +L +G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 661 DPNTRDYDLRTPLHVAASEGLYL-----MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 715
           D + ++    T L  A            + KLL+E GA    KD  G T +D     G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 716 NLIKLL 721
            + K+L
Sbjct: 192 EISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  125 bits (316), Expect = 6e-33
 Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 13/164 (7%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 628
            Y+  + L  A  R  +++   L      ++  D  GNTPL  A+   +   A  L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 629 ASLNVEEAGSFLCT----AVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYL 683
           A  ++    S   +    A A+G +++L  +L +   D N  +      L  AA +G   
Sbjct: 63  A--DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 684 MAKLLVEAG-ASVFPKDRWGNTPL-----DEGRMCGNKNLIKLL 721
             KLL+E G   +  ++ +G T L             ++++KLL
Sbjct: 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  105 bits (264), Expect = 6e-26
 Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 28/147 (19%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDN 603
           A   G    L  +++    D N+ +  G + L  AA +G+ + +  L++ G  DI+ +++
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
           FG T L+EA+           +       V+                LL   + NG D +
Sbjct: 139 FGYTALIEAVGLREGNQLYQDI-------VK----------------LL---MENGADQS 172

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVE 690
            +D   RT +  A  +G   ++K+L +
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 7/127 (5%)

Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRV 655
           +K       L  A +        +L        V+E  +   T    AV   D ++ K +
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

Query: 656 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-VFPKDRWGNTPLDEGRMCGN 714
           +  G D N ++    +P   A ++G   +   +++     +   +R+G   L      G+
Sbjct: 59  IDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118

Query: 715 KNLIKLL 721
            + +KLL
Sbjct: 119 IDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.9 bits (136), Expect = 5e-09
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
            EA           + D+ +L  L+  GAD +  D  GR+ +  A  +GY EI   L Q
Sbjct: 145 IEA--VGLREGNQLYQDIVKL--LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  142 bits (361), Expect = 2e-39
 Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
            A  G++  L   I      N TD +G +PL  AA+ G   ++ FL+Q G D  L     
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGID 661
            + L  A   G      +L+  G   +V E      T    AV       +K +L +G D
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGV--DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR 700
           P          + +A + G   + +++      +    +
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  133 bits (337), Expect = 3e-36
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 6/158 (3%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
                +H  A++G    +   I++   IN  D  G TPL+ A  +G       L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA- 60

Query: 631 LNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAK 686
            + +  G    +    A ++G +D++K +L  G+D N  D++  TPL  A         K
Sbjct: 61  -DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
           +L+E+GA    +   G   +D     G +++ +++E  
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  144 bits (367), Expect = 2e-39
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 558 LIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
            I  GA   N+TD  G + LHLAA     +    L++   D N++DN G TPL  A+   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 617 NDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTP 672
             G   +L++  A+ +++         L  A       +L+ ++++  D N  D   ++ 
Sbjct: 70  AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           LH AA+      A +L++ GA+   ++    TPL      G+    K+L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (336), Expect = 2e-35
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A         + LIR  A D +   +DG +PL LAA    E ++  LI    D+N  D+ 
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G + L  A    N  AA +L                               L NG + + 
Sbjct: 125 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 153

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           ++    TPL +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  120 bits (304), Expect = 4e-31
 Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 31/154 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA       LE LI + AD N  D  G+S LH AA+    +    L++ G + ++++N  
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A + G+   A +L                               L +  + +  
Sbjct: 159 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 187

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           D+  R P  +A     + + +LL E      P+ 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.4 bits (249), Expect = 1e-23
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 583 GYEEIMTFLIQKGVDI-NLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-- 639
               +++  I +G  + N  D  G T L  A +Y    AA  L++  A  +     +   
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA--DANIQDNMGR 59

Query: 640 --LCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
             L  AV+     + + ++ N   D + R +D  TPL +AA   +  M + L+ + A V 
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 697 PKDRWGNTPLDEGRMCGNKNLIKLL 721
             D  G + L       N +   +L
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 3e-11
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           AA  G     + L+   A+ + TD+  R P  +A  R + +I+  L +  +  + + +
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  145 bits (369), Expect = 4e-39
 Identities = 42/196 (21%), Positives = 75/196 (38%), Gaps = 20/196 (10%)

Query: 546 AAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           A  H     L+ L+   A     +  +  G++ LHLAA  G    +  L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----------------LCTAVAR 646
             G+T L  A +      A +L++   S   + + ++                   +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR-WGNTP 705
            +++   R     +     +YD  TPLHVA       M +LL +AGA +   +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 706 LDEGRMCGNKNLIKLL 721
           L         ++++LL
Sbjct: 196 LHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  129 bits (328), Expect = 1e-33
 Identities = 36/163 (22%), Positives = 53/163 (32%), Gaps = 32/163 (19%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NF 604
           +  + +  +              +YDG +PLH+A      E++  L   G D+N  +   
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G TPL  A++        LL                               L  G DP  
Sbjct: 192 GRTPLHLAVEAQAASVLELL-------------------------------LKAGADPTA 220

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD 707
           R Y  RTPL  A      ++A+LL   GA          +P  
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (276), Expect = 8e-27
 Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 32/136 (23%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A  H D   +  L  AGAD N+ +   GR+PLHLA       ++  L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G TPL  A+   N   A LL                                ++G     
Sbjct: 225 GRTPLGSALLRPNPILARLL-------------------------------RAHGAPEPE 253

Query: 665 RDYDLRTPLHVAASEG 680
              D  +P   + S+ 
Sbjct: 254 DGGDKLSPCSSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  105 bits (264), Expect = 4e-25
 Identities = 26/169 (15%), Positives = 47/169 (27%), Gaps = 35/169 (20%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---INLKDNFGNTPLLEAIKYGNDGAAS 622
                DG + LHLA    +E  + FL+        ++L+++ G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 623 LLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 682
            L                                + G      +    T LH+A     +
Sbjct: 63  KL-------------------------------YAAGAGVLVAERGGHTALHLACRVRAH 91

Query: 683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE 731
             A +L++   S             +     + +      D++     E
Sbjct: 92  TCACVLLQPRPSHPRDASDTYLTQSQDC-TPDTSHAPAAVDSQPNPENE 139

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 19/72 (26%), Positives = 26/72 (36%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A        LE L++AGADP    Y GR+PL  A  R    +   L   G          
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 606 NTPLLEAIKYGN 617
            +P   +    +
Sbjct: 259 LSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 10/61 (16%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A    +      L   GA       D  SP   + S    +            +  D + 
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN----------RDEGDEYD 281

Query: 606 N 606
           +
Sbjct: 282 D 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  145 bits (369), Expect = 4e-39
 Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 25/197 (12%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A        +E L+R GADP     +G +P  LAA  G  +++   + KG D+N  D +G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF------------LCTAVARGDSDLLK 653
            T  +EA  YG   A   L K GA++N+                  L  A  +G  ++LK
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 654 RVLSN-GIDPNTRDYDLRTPLHVAASEG----LYLMAKLLVEAGASVFPKDRWGNTPLDE 708
            +L   G D N  D   R  L  A        +  +  LL++ GA V  +   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-- 223

Query: 709 GRMC----GNKNLIKLL 721
             +      +  L++ L
Sbjct: 224 --ILAVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  138 bits (350), Expect = 2e-36
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 22/196 (11%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A  + D+  ++ L+  GA+ N + +  G +PLH A     E+I+  L++ G D  L+   
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
           G TP L A   G+     L + +GA  +V E   +  T    A   G    LK +   G 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGA--DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

Query: 661 DPNTRDYDL----------RTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPL--- 706
           + N R               T L  AA +G   + K+L+ E GA V   D  G   L   
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

Query: 707 -DEGRMCGNKNLIKLL 721
                    + +  LL
Sbjct: 190 LLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (314), Expect = 9e-32
 Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 17/168 (10%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN-FGNTPLLEAIKYGNDGAASLLVKE 627
             +    L  A      +++  L++ G ++N ++   G TPL  A++   +    LL++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 628 GASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL 683
           GA  +         T    A   G   LLK  LS G D N  D+   T    AA  G   
Sbjct: 62  GA--DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

Query: 684 MAKLLVEAGASV----------FPKDRWGNTPLDEGRMCGNKNLIKLL 721
             K L + GA+V              + G T L +    G+  ++K+L
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  111 bits (281), Expect = 2e-27
 Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 35/159 (22%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINL 600
           AA  G +  L+ L+   GAD N  D  GR+ L  A         E I   L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 601 KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI 660
           +   G TPL+ A++  + G    L+                                  I
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLL------------------------------EQEHI 244

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           + N  D D +T L +A    L  +A+LL + GAS    D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.8 bits (172), Expect = 3e-13
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           A     L  ++ L+ +   + N TD DG++ L LA     ++I   L ++G   +  D 
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  143 bits (363), Expect = 7e-39
 Identities = 52/185 (28%), Positives = 82/185 (44%), Gaps = 9/185 (4%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---K 601
           A    + +++ E L    +   + D DGR PLH + S    EI +FL+ K  ++NL    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLS 657
           D+ G TP   A   GN      L       ++ +  +   T    AV +   ++ + ++ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-VFPKDRWGNTPLDEGRMCGNKN 716
           NG     +D   + PLH AAS G   + +LL   G S V  +D+ G TPL      G+ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 717 LIKLL 721
              LL
Sbjct: 189 AAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  126 bits (318), Expect = 6e-33
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 572 GRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
              PLH A     + ++   L  K   +  KD  G  PL  ++ +      S L+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 631 LNVEEAGSF-----LCTAVARGDSDLLKRVLSN--GIDPNTRDYDLRTPLHVAASEGLYL 683
           +N+++            A + G+ +++K +       D N       T LH+A  +  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +++ L+E GASV  KD++   PL      G+  LI+LL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  123 bits (312), Expect = 4e-32
 Identities = 47/179 (26%), Positives = 64/179 (35%), Gaps = 36/179 (20%)

Query: 546 AAYHGDLYQLEGLI--RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           A   G+L  ++ L       D N+    G + LHLA  + + E+  FLI+ G  + +KD 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
           F   PL  A   G+     LL   G S                                N
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS------------------------------AVN 168

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEA-GASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            +D    TPL  A +EG    A LLVE  GA     D  G    D   +  N+ + K  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 224

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  139 bits (353), Expect = 1e-38
 Identities = 48/161 (29%), Positives = 71/161 (44%), Gaps = 32/161 (19%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G DP  T++ G + LH+A+ +G    + +L+Q G D N+KD+ G TPL EA  +G+    
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 622 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 681
            LL++  A                                 NT  Y   +PLH AA  G 
Sbjct: 60  ELLLQHKA-------------------------------LVNTTGYQNDSPLHDAAKNGH 88

Query: 682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
             + KLL+  GAS    + +G  P+D       K+L+ L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  118 bits (299), Expect = 2e-31
 Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 31/149 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A+  GD+  +E L++ G+DPN  D+ G +PLH A + G+ +++  L+Q    +N      
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           ++PL +A K G+     LL                               LS G   N  
Sbjct: 77  DSPLHDAAKNGHVDIVKLL-------------------------------LSYGASRNAV 105

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           +     P+     E +  +  L  +  +S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  144 bits (366), Expect = 1e-38
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 10/179 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA   D   ++ L+ +G D ++ D  G + L+ A   G  + +   ++K   +      G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 606 -NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-LCTAVARGDSDLLKRVLSNGIDPN 663
             T    A+   +    S  + E  S          +   +  G  D++  +L      N
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 664 TRDYDLRTP-LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           T +  L  P + +A       M + L +   ++        +   E  +  +  + K++
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  137 bits (347), Expect = 3e-36
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 7/180 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A    ++  +  L+ AGA  N    +   PLH AA+    +I+  L+  G+D +  D+ G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSF--LCTAVARGDSDLLKRVLSNGIDP 662
           NT L  A+  GN     L VK+   L    + G       AV   D  ++   LS     
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PS 154

Query: 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP-LDEGRMCGNKNLIKLL 721
                 L + +H+    G   M  LL++   S    +     P +       +  +++ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  131 bits (333), Expect = 3e-34
 Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 11/182 (6%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           S        QL+  +    D  + D  G S  + A +     ++  L+  G   NL +N 
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN- 62

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
              PL +A    +     +L+  G   +  +      T    AV  G+   +K  +    
Sbjct: 63  -EFPLHQAATLEDTKIVKILLFSGL--DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 661 DPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
                     +T  + A       +    +    S F       + +      G+ +++ 
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMI 178

Query: 720 LL 721
           LL
Sbjct: 179 LL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  108 bits (272), Expect = 3e-26
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 7/133 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A    D+  +   +              S +H+    G+ ++M  L+      N  ++  
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 606 NTPLL-EAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
             P +  AI   +      L K     N+  A       V   D+++ K ++   ++  +
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI--NIYSA---NLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 665 RDYDLRTPLHVAA 677
             Y     +    
Sbjct: 250 DSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.9 bits (154), Expect = 7e-11
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 7/81 (8%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  + D+  L+ L +   +         S           EI   +I+K V+        
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTK 254

Query: 606 NTPLLEAIKYGNDGAASLLVK 626
           +  +++  K     + +  ++
Sbjct: 255 DLDIVKNNKLDEIISKNKELR 275

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 6/70 (8%)

Query: 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           K++  +           D    + +I    +     Y     L +  +   +EI    I 
Sbjct: 216 KYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTK--DLDIVKNNKLDEI----IS 269

Query: 594 KGVDINLKDN 603
           K  ++ L   
Sbjct: 270 KNKELRLMYV 279

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  142 bits (362), Expect = 1e-38
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 6/196 (3%)

Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMT 589
            I+          NS         +   I  GA   N+TD  G + LHLAA     +   
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74

Query: 590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF----LCTAVA 645
            L++   D N++DN G TPL  A+     G   +L++  A+ +++         L  A  
Sbjct: 75  RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-DLDARMHDGTTPLILAAR 133

Query: 646 RGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP 705
                +L+ ++++  D N  D   ++ LH AA+      A +L++ GA+   ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193

Query: 706 LDEGRMCGNKNLIKLL 721
           L      G+    K+L
Sbjct: 194 LFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  132 bits (335), Expect = 6e-35
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A         + LIR  A D +   +DG +PL LAA    E ++  LI    D+N  D+ 
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G + L  A    N  AA +L                               L NG + + 
Sbjct: 157 GKSALHWAAAVNNVDAAVVL-------------------------------LKNGANKDM 185

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           ++    TPL +AA EG Y  AK+L++  A+    D     P D  +   + ++++LL
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  117 bits (297), Expect = 7e-30
 Identities = 33/148 (22%), Positives = 55/148 (37%), Gaps = 31/148 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA       LE LI + AD N  D  G+S LH AA+    +    L++ G + ++++N  
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A + G+   A +L                               L +  + +  
Sbjct: 191 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 219

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           D+  R P  +A     + + +LL     
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  101 bits (255), Expect = 3e-24
 Identities = 38/173 (21%), Positives = 59/173 (34%), Gaps = 46/173 (26%)

Query: 564 DPNRTDYDGRSPLHLAASRG-------------YEEIMTFLIQKGVDI-NLKDNFGNTPL 609
           D N    DG +PL +A+  G                +++  I +G  + N  D  G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDL 669
             A +Y    AA  L                               L    D N +D   
Sbjct: 62  HLAARYSRSDAAKRL-------------------------------LEASADANIQDNMG 90

Query: 670 RTPLHVAASEGLYLMAKLLVEAGAS-VFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           RTPLH A S     + ++L+   A+ +  +   G TPL        + +++ L
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 5e-17
 Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 19/127 (14%)

Query: 596 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 655
           +D+N++   G TPL+ A   G         +E  +  V                      
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVIS---------------DF--- 42

Query: 656 LSNGID-PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
           +  G    N  D    T LH+AA       AK L+EA A    +D  G TPL        
Sbjct: 43  IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADA 102

Query: 715 KNLIKLL 721
           + + ++L
Sbjct: 103 QGVFQIL 109

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  146 bits (371), Expect = 1e-38
 Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 23/181 (12%)

Query: 546 AAYHGDLYQLEGLI-----RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           A    +   L+ ++     ++    +  +  G S LH A    +E++    ++ G+D+N+
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 601 KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI 660
           +DN    PL  +++         L+++     ++                       NG 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP------------------YHNGT 281

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720
                       +  AA      + +LL E    V      G     + +      + ++
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRM 341

Query: 721 L 721
            
Sbjct: 342 K 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  128 bits (325), Expect = 2e-32
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 561 AGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 618
                +     G++ LH     G  Y E++  L+Q G     KD    TPL+ A+++ N 
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 619 GAASLLVKEGASL---NVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRT 671
            A  L++    S     ++ A     +    A+     D+  R +  GID N  D +   
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246

Query: 672 PLHVAASEGLYLMAKLLVEAGAS-------------VFPKDRWGNTPLDEGRMCGNKNLI 718
           PL+++    + L+ K L++                 V P        +        + ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 719 KLL 721
           +LL
Sbjct: 307 QLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (307), Expect = 3e-30
 Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 14/166 (8%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
                 +  ++D +    +H+AA +G  + +  LI+ GV   +++ FG T L  A K+G 
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
              A  L   G   ++      +  AV    +DL+  ++    +        + P  +  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERG------QMPESLLN 119

Query: 678 SEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL--IKLL 721
                 + ++          K   G T L      G + L  IK+L
Sbjct: 120 ECDEREVNEIGSHV------KHCKGQTALHWCVGLGPEYLEMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 94.6 bits (236), Expect = 6e-21
 Identities = 13/115 (11%), Positives = 25/115 (21%), Gaps = 31/115 (26%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G             +  AA    +E++  L +K  ++    N G    ++  K       
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 622 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
            +                                L+      TR         V+
Sbjct: 340 RMK-------------------------------LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.2 bits (204), Expect = 8e-17
 Identities = 13/129 (10%), Positives = 28/129 (21%), Gaps = 26/129 (20%)

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELA 540
            L + L + K     I    + +G  VL + +   +                        
Sbjct: 258 LLTKEL-LQKTDVFLIQACPYHNGTTVLPDRVVWLDF------------VPA-------- 296

Query: 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
                AA       L+ L     +  R+   G         +    +    +     +  
Sbjct: 297 -----AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 601 KDNFGNTPL 609
           +        
Sbjct: 352 RSRSRARSS 360

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  144 bits (366), Expect = 5e-38
 Identities = 43/174 (24%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
           L    A    T    +  L  AA  G  E++M  L    V+ +  D   +TPL  A  Y 
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 617 NDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTP 672
                 LL++ GA  +V          L  A + G  ++ + +L +G   N  D    TP
Sbjct: 70  RVRIVQLLLQHGA--DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTP 127

Query: 673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           LH AAS+    +  LL+  GA     +  G + +D       +  +       S
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  138 bits (349), Expect = 9e-36
 Identities = 46/206 (22%), Positives = 76/206 (36%), Gaps = 33/206 (16%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           AA  G+  +L   L     + + +D    +PLHLAA      I+  L+Q G D++ KD  
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
           G  PL  A  YG+     LL+K GA   V     +  T    A ++   ++   +LS+G 
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGA--CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVE---------------------AGASVFPKD 699
           DP   +   ++ + +A +  L        +                          F + 
Sbjct: 149 DPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208

Query: 700 RWGNTPL----DEGRMCGNKNLIKLL 721
           +   T L            K + +LL
Sbjct: 209 QSHETALHCAVASLH-PKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (313), Expect = 5e-31
 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 15/180 (8%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA    +     L+  GADP   +  G+S + +A +    E +T+  +           G
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK-----------G 179

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAG-SFLCTAVARGDSDLLKRV---LSNGID 661
           ++ L  A +         L  E  +    ++  + L  AVA       +     L  G +
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239

Query: 662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            N ++ D  TPLHVAA      + ++L + GA +   D  G T L    + G+    +LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (311), Expect = 9e-31
 Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)

Query: 546 AAYHGDLYQL---EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           A       +    E L+R GA+ N  + D  +PLH+AA R + ++M  L + G  +N  D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA--VARGDSDLLKRVLSNGI 660
           + G T L  A   G+     LL+  G+  +         TA  +    ++ ++++LS   
Sbjct: 278 SLGQTALHRAALAGHLQTCRLLLSYGS--DPSIISLQGFTAAQMG---NEAVQQILSEST 332

Query: 661 DPNTRDYDLRTPLHVAASEG 680
              T D D    L  A+  G
Sbjct: 333 PMRTSDVD--YRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  109 bits (275), Expect = 5e-26
 Identities = 40/156 (25%), Positives = 58/156 (37%), Gaps = 20/156 (12%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN-DGAASLLVKEGA 629
            G+S L L                     L   +    LLEA + GN +   +LL     
Sbjct: 3   FGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 630 SLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA 685
             N   +     T    A       +++ +L +G D + +D     PLH A S G Y + 
Sbjct: 50  --NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT 107

Query: 686 KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +LL++ GA V   D W  TPL E        +  LL
Sbjct: 108 ELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  144 bits (366), Expect = 8e-38
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 17/193 (8%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK---GVDINLKD 602
           A        +  L++AGADP   +   RS LH AA+     +M +++       DI   D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 603 NFGNTPLLEAIKYGNDG---AASLLVKEGASLNVEEAGSF----------LCTAVARGDS 649
             G T L+            +A LLV++GA ++ + A             L  A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 650 DLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 708
            ++K ++   G + + +D D +TP+ +AA EG   +   L++ GASV   D   +T    
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

Query: 709 GRMCGNKNLIKLL 721
            +   + N++ + 
Sbjct: 353 AQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  131 bits (332), Expect = 2e-33
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 17/186 (9%)

Query: 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           +H +           +G+ +  +        P   + +    LH  A+ G   I   + +
Sbjct: 58  QHYSLYPN--PQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITR 114

Query: 594 KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL------NVEEAGSFLCT----A 643
           + V+I        T L       +   +  L+   A        +V        T    A
Sbjct: 115 ESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE---AGASVFPKDR 700
           V      L+  ++  G DP   +   R+ LH AA+   + M   ++        +   DR
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 701 WGNTPL 706
            G T L
Sbjct: 234 NGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  129 bits (327), Expect = 1e-32
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 29/203 (14%)

Query: 546 AAYHGDL--------YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
            A +           ++ +  I AGAD N  D D  +PL LA       ++ +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLV---KEGASLNVEEAGSFLCT----AVARGDSD 650
             + +    + L +A    + G    ++   K     ++EE      T           D
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG--DIEELDRNGMTALMIVAHNEGRD 249

Query: 651 LLKRV---LSNGIDPNTR--------DYDLRTPLHVAASEGLYLMAKLLV-EAGASVFPK 698
            +      +  G   +           Y  RT LH AA      + K LV E G++   +
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ 309

Query: 699 DRWGNTPLDEGRMCGNKNLIKLL 721
           D  G TP+      G   ++  L
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (272), Expect = 1e-25
 Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 43/160 (26%)

Query: 546 AAYHGDLYQLEG---LIRAGADPNRT--------DYDGRSPLHLAASRGYEEIMTFLI-Q 593
            A++    Q+     L+  GA  +           Y GR+ LH AA      I+ +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 594 KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLK 653
           KG + + +D  G TP++ A + G       L                             
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL----------------------------- 332

Query: 654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693
             +  G      D    T   +A +   + +  +      
Sbjct: 333 --IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.0 bits (237), Expect = 4e-21
 Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 23/171 (13%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
               +++    +  L  A+  GY +            N   ++   P  +    GND   
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGNGNDFLG 77

Query: 622 SLLVKEGASLNVEEAGSFLCTAV---ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 678
                        E        +   A G   + + +    ++     ++ RT LH  AS
Sbjct: 78  DFNHTNLQ--IPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRHN-RTVLHWIAS 134

Query: 679 EG--------LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                     +   AK  + AGA V   D   NTPL    +   + L+  L
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.1 bits (180), Expect = 8e-14
 Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 9/139 (6%)

Query: 593 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL 652
           +K    +         LLEA   G        ++  +                 G+  L 
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGNGNDFLG 77

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
               +N   P   + +    LH  A+ G Y + + +     ++    R   T L      
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASN 135

Query: 713 GNKNLIKLLEDAKSTQLLE 731
            +    + L   ++ + + 
Sbjct: 136 SSAEKSEDLIVHEAKECIA 154

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
           AA  G +  +  LI+ GA     D    +   LA +  +  I+    +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  140 bits (354), Expect = 8e-38
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 6/178 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G+L  ++  ++   DP++ + +G + LH A       I+ FLI  G ++N  D+ G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGS---FLCTAVARGDSDLLKRVLSNGI 660
            TPL  A    +      LV+ GA++       G+     C     G +D    +     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI 718
                +      L   ++E    +         +V  +D    T      + G +  +
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  121 bits (306), Expect = 2e-31
 Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 12/161 (7%)

Query: 556 EGLIRAGADPNRTD---YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA 612
             ++R    P +      +    L  AA  G  E++   +++  D +  +  G T L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 613 IKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRD-Y 667
           I   N      L+  GA  NV    S   T    A +  D+ +   ++ +G         
Sbjct: 62  ICGANYSIVDFLITAGA--NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 668 DLRTPLHVAAS--EGLYLMAKLLVEAGASVFPKDRWGNTPL 706
           D  T         EG    A  L +   S+   +      L
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 97.3 bits (243), Expect = 7e-23
 Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 588 MTFLIQKGVDINLKDNFGNTP---LLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT-- 642
           M  +++K             P   LL+A   G        VKE    +  +      T  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN--DPSQPNEEGITAL 58

Query: 643 --AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR 700
             A+   +  ++  +++ G + N+ D    TPLH AAS    ++   LV+ GA++F    
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

Query: 701 -WGNTPLD--EGRMCGNKNLIKLL 721
             G T  +  +    G  +    L
Sbjct: 119 SDGATAFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A +       G       L          +      L   ++   +E+  F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVL 182

Query: 600 LKDNFGNTPLLEAIKYGNDG 619
            +D    T    A  +G +G
Sbjct: 183 RRDGPEETDWWWAALHGQEG 202

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  138 bits (351), Expect = 1e-37
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 556 EGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
           E  I    D   N  D   R+PL +A   G E  +  L++    +  KD  G+T L+ A+
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 614 KYGNDGAASLLVKEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDL 669
           K    G A  L+ +G+  NV          L  ++  G S++   +L +G + N R+ + 
Sbjct: 77  KNNRLGIAEKLLSKGS--NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725
            TPL VA+  G   + K L+E GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (269), Expect = 1e-26
 Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 12/157 (7%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 628
           D +G     +   +   + + FL       N +D++  TPL+ A   G + A   LV+  
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENF 58

Query: 629 ASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 684
               +E+        L  AV      + +++LS G + NT+D+  +TPL  +   G   M
Sbjct: 59  D--KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116

Query: 685 AKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +  L+E GA+V  ++  G TPL      G   ++K L
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.9 bits (188), Expect = 7e-16
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 12/127 (9%)

Query: 599 NLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKR 654
           +  D  G        +            +          S+  T    A   G  + + +
Sbjct: 2   SHMDKNGEIVEKIKDEKSI--------NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDK 53

Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
           ++ N      +D +  T L  A       +A+ L+  G++V  KD  G TPL    + G 
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

Query: 715 KNLIKLL 721
             +   L
Sbjct: 114 SEMSYFL 120

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  137 bits (348), Expect = 1e-37
 Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 32/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
               G+   +   +     D N+ D  G SPLH A   G   ++  LI +G  IN+ +  
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
            +TPL  A  +G+      L                               L    D N 
Sbjct: 72  DDTPLHLAASHGHRDIVQKL-------------------------------LQYKADINA 100

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            +     PLH A   G   +A+ LV  GA V   +++G  P+D+ +    + L +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  122 bits (308), Expect = 4e-32
 Identities = 37/150 (24%), Positives = 57/150 (38%), Gaps = 31/150 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A   G    +E LI  GA  N  +    +PLHLAAS G+ +I+  L+Q   DIN  +  G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           N PL  A  +G D  A  L                               ++NG   +  
Sbjct: 106 NVPLHYACFWGQDQVAEDL-------------------------------VANGALVSIC 134

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
           +     P+  A +    L+ +   + G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  101 bits (254), Expect = 7e-25
 Identities = 23/87 (26%), Positives = 41/87 (47%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA HG    ++ L++  AD N  +  G  PLH A   G +++   L+  G  +++ + +G
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLN 632
             P+ +A     +       K G +LN
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQNLN 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  133 bits (337), Expect = 4e-36
 Identities = 56/176 (31%), Positives = 83/176 (47%), Gaps = 31/176 (17%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G D+N  D+ G
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A  +G+     +L                               L NG D N  
Sbjct: 81  MTPLRLAALFGHLEIVEVL-------------------------------LKNGADVNAN 109

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           D +  TPLH+AA  G   + ++L++ GA V  +D++G T  D     GN++L ++L
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.4 bits (135), Expect = 5e-09
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
           AA  G L  +E L++ GAD N  D  G++   ++   G E++   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  134 bits (340), Expect = 6e-36
 Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 12/166 (7%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
               G        +              +PLH AA RG    +   +   V +N  D  G
Sbjct: 52  GTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 606 NTPLLEAIKYGNDGAASLLVKE-GASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGI 660
           +T L  A   G+     +L  +      + +      T    A  +G +D+++ +L+ G 
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNI--ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 706
             + R+ + +    +A +     + K      A     +       
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  121 bits (306), Expect = 2e-31
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 8/160 (5%)

Query: 565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLL 624
           P +    G+  +  A           L  +  DI    +  +T   +    G        
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR-----TG 59

Query: 625 VKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY 682
           +     +    E   + L  A  RG+   L+  L N +  N  D    T L+ A   G  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119

Query: 683 LMAKLLV-EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            + ++L  +    +  +++ G+T L      G  ++++LL
Sbjct: 120 DIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.9 bits (247), Expect = 1e-23
 Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 32/136 (23%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A + G    +E L  +   + N+ +  G + LH AA +GY +I+  L+ KG   +L++  
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
                  A                                    + LLK+          
Sbjct: 173 KKLAFDMATNAAC-------------------------------ASLLKKKQGTDAVRTL 201

Query: 665 RDYDLRTPLHVAASEG 680
            + +       +  E 
Sbjct: 202 SNAEDYLDDEDSDLEH 217

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  131 bits (332), Expect = 9e-36
 Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 32/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G   ++  L+  GA    TD+ G SPLHLAA  G+      L++ GV  + +    
Sbjct: 9   AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A   G+     +L                               L +G D N +
Sbjct: 68  RTPLHMAASEGHANIVEVL-------------------------------LKHGADVNAK 96

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           D    T LH A       + +LL++ GA V  + ++  T  D     GN++L ++L+
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  129 bits (328), Expect = 2e-35
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 8/138 (5%)

Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA 620
                +       + L  AA+RG  E +  L++ G D N  + FG  P+   +  G+   
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQV 59

Query: 621 ASLLVKEGASLNVEEAGSF-----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHV 675
           A LL+  GA      A        +  A   G  D L  +   G   +  D   R P+ +
Sbjct: 60  AELLLLHGA--EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117

Query: 676 AASEGLYLMAKLLVEAGA 693
           A  +G   +A+ L  A  
Sbjct: 118 AEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           AA  G L  L  L RAGA  +  D  GR P+ LA  +G+ +I  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC---GNK 715
               +         L  AA+ G     + L+EAGA     +R+G  P+         G+ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI----QVMMMGSA 57

Query: 716 NLIKLL 721
            + +LL
Sbjct: 58  QVAELL 63

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  129 bits (326), Expect = 1e-34
 Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 33/177 (18%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  GDL QL  L++   + N  +  GR+ L      G  EI   L+ +G + +LKD  G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDRTG 70

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
              + +A + G       L                               L    D N  
Sbjct: 71  FAVIHDAARAGFLDTLQTL-------------------------------LEFQADVNIE 99

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGAS-VFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           D +   PLH+AA EG   + + LV+  AS V  ++  G+T  D  R+ G   ++ L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  112 bits (283), Expect = 6e-29
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 30/136 (22%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L+  GA+P+  D  G + +H AA  G+ + +  L++   D+N++DN GN PL  A K G+
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
                 LVK  AS                              +   R++   T   +A 
Sbjct: 116 LRVVEFLVKHTAS------------------------------NVGHRNHKGDTACDLAR 145

Query: 678 SEGLYLMAKLLVEAGA 693
             G   +  L+   GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 93.6 bits (234), Expect = 2e-22
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKDNF 604
           AA  G L  L+ L+   AD N  D +G  PLHLAA  G+  ++ FL++    ++  +++ 
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGA 629
           G+T    A  YG +   SL+   GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  127 bits (323), Expect = 2e-34
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 34/177 (19%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           AA  GD+ ++  L+ R    P+  +  G++ L +    G   I   L+++G   N++D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS 67

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G +P+ +A + G      +LV+ GA                               D N 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGA-------------------------------DVNV 96

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            D     P+H+A  EG   +   L    + +  +D  G TPL+     G ++L+ +L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  109 bits (275), Expect = 5e-28
 Identities = 33/146 (22%), Positives = 54/146 (36%), Gaps = 35/146 (23%)

Query: 546 AAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
             +    +     L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+ D  
Sbjct: 43  MMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT 100

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G  P+  A++ G+    S L    +                               D + 
Sbjct: 101 GALPIHLAVQEGHTAVVSFLAA-ES-------------------------------DLHR 128

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVE 690
           RD    TPL +A   G   +  +L  
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  125 bits (317), Expect = 1e-33
 Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 33/177 (18%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           AA  GD+  ++ L      +    +    +PLH AA      ++ +L+Q G D++ KD  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G  PL  A  YG+   A LL                               + +G   N 
Sbjct: 75  GLVPLHNACSYGHYEVAELL-------------------------------VKHGAVVNV 103

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            D    TPLH AA++G Y + KLL++ GA    K+R GNTPLD  +  G+ ++  LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (282), Expect = 9e-29
 Identities = 44/161 (27%), Positives = 57/161 (35%), Gaps = 35/161 (21%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNTPLLEAIKYGNDGA 620
           GA  N    +    L  AA  G  E +  L   + V+    +   +TPL  A  Y     
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 621 ASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 680
              L                               L +G D + +D     PLH A S G
Sbjct: 58  VEYL-------------------------------LQHGADVHAKDKGGLVPLHNACSYG 86

Query: 681 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
            Y +A+LLV+ GA V   D W  TPL E    G   + KLL
Sbjct: 87  HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  111 bits (280), Expect = 2e-28
 Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 32/148 (21%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +  +  +E L++ GAD +  D  G  PLH A S G+ E+   L++ G  +N+ D + 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL EA   G      LL                               L +G DP  +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-------------------------------LQHGADPTKK 137

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           + D  TPL +   +G   +  LL    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  128 bits (323), Expect = 1e-33
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 31/207 (14%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI-----N 599
           AA   D+  L + L   G + ++    G + LH+AA     E    L++   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT---------------AV 644
            +   G T L  A+   N      L+  GAS++    GS                   A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 645 ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG----LYLMAKLLVEAGASV----- 695
             G  ++++ ++ +G D   +D    T LH+   +        M  LL+           
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 696 -FPKDRWGNTPLDEGRMCGNKNLIKLL 721
               +  G TP     + GN  + + L
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 97.3 bits (243), Expect = 6e-23
 Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 40/164 (24%)

Query: 572 GRSPLHLAASRG-YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
             SPL LAA     + +   L  +G +++ +   G T L  A  Y N  AA +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 631 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
           L  E                             +  Y+ +T LH+A       + + L+ 
Sbjct: 63  LVFE--------------------------PMTSELYEGQTALHIAVINQNVNLVRALLA 96

Query: 691 AGASVFPKDR-------------WGNTPLDEGRMCGNKNLIKLL 721
            GASV  +               +G  PL      G++ +++LL
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  125 bits (315), Expect = 4e-33
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 37/191 (19%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR----GYEEIMTFLIQKGVDINL 600
           +AA  G       L   G +         + L+            +I  FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 601 KDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGI 660
           +   G T      + G +                            G ++L K  L  G 
Sbjct: 71  RTKEGTTLFFPLFQGGGNDIT-------------------------GTTELCKIFLEKGA 105

Query: 661 DPNTRDYDLRTPLHVAASEGLYLMAK-------LLVEAGASVFPKDRWGNTPLDEGRMCG 713
           D        +  +            +       +  ++G  +  KD+WG T L+  + C 
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 714 NKNLIKLLEDA 724
               +K++ED 
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 13/103 (12%)

Query: 546 AAYHG------DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM-------TFLI 592
               G           +  +  GAD        +  +       + +             
Sbjct: 82  LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141

Query: 593 QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE 635
           Q G+ + +KD +G T L    +     A  ++       N++E
Sbjct: 142 QSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 90.9 bits (226), Expect = 4e-21
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 34/162 (20%)

Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA 629
                 +  AA  G  E    L +KG +   +    +  L + ++  ND A   +     
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISM--- 59

Query: 630 SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG------LYL 683
                    FL               ++ G D  +R  +  T        G         
Sbjct: 60  ---------FL---------------INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

Query: 684 MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK 725
           + K+ +E GA +    +     + +       +  +++   K
Sbjct: 96  LCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 7/65 (10%)

Query: 546 AAYHGDLYQLEG-------LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
             ++  + + E          ++G      D  G + L           +  +       
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 599 NLKDN 603
           NLK+N
Sbjct: 181 NLKEN 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  126 bits (319), Expect = 6e-33
 Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 10/168 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
                        I  G           + L  ++  G  +++  +I +  D +L ++ G
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGID 661
            T L  A+  G+      LV+ G   NV  A S   T    A +  +  + K ++ +G  
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGV--NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128

Query: 662 PNTRDYD---LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 706
                Y              EG    ++ L      +   ++     L
Sbjct: 129 VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (304), Expect = 5e-31
 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 10/160 (6%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG 628
           +  G+  L         +  +  I  G+ +          LL++   G       ++ E 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 629 ASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM 684
              +           L  AV  G ++++K ++  G++ N  D D  TPLH AAS     +
Sbjct: 61  D--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 685 AKLLVEAGASVFPK---DRWGNTPLDEGRMCGNKNLIKLL 721
            K LVE+GA+VF     D        E    G     + L
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 53.0 bits (128), Expect = 7e-08
 Identities = 7/76 (9%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL--KDN 603
               G     + L          +      L     +  +E+    +++G  + +  +++
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHRED 202

Query: 604 FGNTPLLEAIKYGNDG 619
                   A     +G
Sbjct: 203 EDEIEWWWARLNDKEG 218

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  123 bits (311), Expect = 7e-33
 Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 15/153 (9%)

Query: 559 IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND 618
           +   A  +         L  AA+RG  E +  L++ G + N  +++G  P+   +  G+ 
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA 57

Query: 619 GAASLLVKEGASLNVEEAGSFLCT-----AVARGDSDLLKRVLSNGIDPNTRDYDLRTPL 673
             A LL+  GA      A     T     A   G  D L  +   G   + RD   R P+
Sbjct: 58  RVAELLLLHGA--EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 674 HVAASEGLYLMAKLLVEAGASVFPKDRWGNTPL 706
            +A   G   +A+ L  A          G+   
Sbjct: 116 DLAEELGHRDVARYLRAAAG-----GTRGSNHA 143

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 97.2 bits (243), Expect = 9e-24
 Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 37/124 (29%)

Query: 558 LIRAGADPNRTDYDGR-SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
           L+  GA+PN  D      P+H AA  G+ + +  L + G  ++++D +G  P+  A + G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 617 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
           +   A  L                                                  + 
Sbjct: 123 HRDVARYLRAAAGGTRG------------------------------------SNHARID 146

Query: 677 ASEG 680
           A+EG
Sbjct: 147 AAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.6 bits (187), Expect = 3e-16
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G L  L  L RAGA  +  D  GR P+ LA   G+ ++  +L          ++  
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

Query: 606 NTPL 609
               
Sbjct: 145 IDAA 148

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (304), Expect = 6e-31
 Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 36/181 (19%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NF 604
           AA   D   L  L+    D +  D +GR+ L   A  G ++ +  L + G D++ +D   
Sbjct: 52  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G T L  A  Y        L                               +  G D   
Sbjct: 111 GLTALHMAAGYVRPEVVEAL-------------------------------VELGADIEV 139

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            D    T L +A            ++ G  +  +       + EG++     + +++E  
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEVDEIVEKR 196

Query: 725 K 725
            
Sbjct: 197 G 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  118 bits (298), Expect = 4e-30
 Identities = 34/160 (21%), Positives = 56/160 (35%), Gaps = 27/160 (16%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
            A  G    +  L  AGAD +  D   G + LH+AA     E++  L++ G DI ++D  
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA--------------------- 643
           G T L  A +          ++ G  + +E+  + L                        
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVE 203

Query: 644 --VARGDS-DLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 680
             V   D  D       +  +   +DY+    L  A +E 
Sbjct: 204 YLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  114 bits (287), Expect = 1e-28
 Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 11/161 (6%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           +RT  +G     +    G+            D+  +     TP   A +  ++ A S L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 626 KEGASLNVEEAGSF----LCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEG 680
            E    +V+         L      G    ++ +   G D + RD     T LH+AA   
Sbjct: 66  -EDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 681 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
              + + LVE GA +  +D  G T L+  R           
Sbjct: 123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 30/126 (23%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-LCTAVARGDSDLLKRVL 656
            +     G    L   K G+  +        A  +V         TA  + D   L   L
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALS-QL 64

Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD-RWGNTPLDEGRMCGNK 715
               D +  D + RT L   A  G     +LL EAGA +  +D R G T L         
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 716 NLIKLL 721
            +++ L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 21/117 (17%), Positives = 31/117 (26%), Gaps = 21/117 (17%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G    +   +   +GA   L+                     G S           D  +
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLI-----------------EWKDGHSPSWVPSSYIAADVVS 43

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                 TP   AA +        L+E    V   D  G T L      G+   ++LL
Sbjct: 44  EY---ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  116 bits (293), Expect = 8e-31
 Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 31/135 (22%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN  D   
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPLL A+  G+     LL+ +GA                               D   +
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGA-------------------------------DKTVK 102

Query: 666 DYDLRTPLHVAASEG 680
             D  T      ++ 
Sbjct: 103 GPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (275), Expect = 2e-28
 Identities = 33/153 (21%), Positives = 43/153 (28%), Gaps = 31/153 (20%)

Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVK 626
                       A   G  + +   + KG D+N     G  PL  A   G       L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 627 EGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAK 686
           +GA                               D N  D    TPL  A  EG     K
Sbjct: 62  KGA-------------------------------DINAPDKHHITPLLSAVYEGHVSCVK 90

Query: 687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
           LL+  GA    K   G T  +       K L++
Sbjct: 91  LLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  117 bits (297), Expect = 1e-30
 Identities = 33/180 (18%), Positives = 52/180 (28%), Gaps = 50/180 (27%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NF 604
           AA   D   L  L+    D +  D +GR+ L   A  G ++ +  L + G D++ +D   
Sbjct: 51  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G T L  A  Y        L                               +  G D   
Sbjct: 110 GLTALHMAAGYVRPEVVEAL-------------------------------VELGADIEV 138

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            D    T L +A            ++ G  +                 G + +I +LE  
Sbjct: 139 EDERGLTALELAREILKTTPKGNPMQFGRRI-----------------GLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  116 bits (294), Expect = 3e-30
 Identities = 34/165 (20%), Positives = 56/165 (33%), Gaps = 11/165 (6%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
               +RT  +G     +    G+            D+  +     TP   A +  ++ A 
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQAL 60

Query: 622 SLLVKEGASLNVEEAGSFLCT----AVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVA 676
           S L+ E    +V+       T        G    ++ +   G D + RD     T LH+A
Sbjct: 61  SQLL-EDR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

Query: 677 ASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           A      + + LVE GA +  +D  G T L+  R           
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  100 bits (251), Expect = 2e-24
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
            A  G    +  L  AGAD +  D   G + LH+AA     E++  L++ G DI ++D  
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAV 644
           G T L  A +          ++ G  + +E+  + L   V
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 182

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 80.2 bits (199), Expect = 2e-17
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 594 KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF-LCTAVARGDSDLL 652
             +  +     G    L   K G+  +        A  +V         TA  + D   L
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQAL 60

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD-RWGNTPLDEGRM 711
            ++L    D +  D + RT L   A  G     +LL EAGA +  +D R G T L     
Sbjct: 61  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 712 CGNKNLIKLL 721
                +++ L
Sbjct: 120 YVRPEVVEAL 129

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  121 bits (305), Expect = 2e-30
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 22/184 (11%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLK 601
                +L  ++ L++ G++    D  G S L  A               L      + L+
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 602 DNFGNTPL------------LEAIKYGNDGAASLLVKEGASLNVEE------AGSFLCTA 643
           D+   T L              A KY  D     +VK+                +     
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN 703
                 + L          N +D +  T L++AA  G   +   L++ GA  F  ++ G 
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 704 TPLD 707
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  115 bits (288), Expect = 4e-28
 Identities = 50/307 (16%), Positives = 97/307 (31%), Gaps = 33/307 (10%)

Query: 438 KLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
           K      E NGT+D      P  +F        +  P  +                 N  
Sbjct: 6   KGPSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIM------KALPSPVVNDNEQ 59

Query: 498 DIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEG 557
            +        L  LL  +  ++    L +D +   S+  +    + + +         + 
Sbjct: 60  KMK---LEAFLQRLLFPEIQEM-PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115

Query: 558 LIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
                 + N   D  G +PLH   S    E++  L++ G +    DN G + L++A+K  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 617 N----DGAASLLVKEGASLN-------------VEEAGSFLCTAVARGDSD-LLKRVLSN 658
           N        +LL      L              +  +G   C+A A+   D L+  ++  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP----KDRWGNTPLDEGRMCGN 714
              P     + +       +          ++    +      +D  G+T L+     GN
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 715 KNLIKLL 721
            +++  L
Sbjct: 296 ISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 17/89 (19%), Positives = 32/89 (35%)

Query: 521 LKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           + + Q+      +  +       N       L  L+         N  D +G + L++AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 581 SRGYEEIMTFLIQKGVDINLKDNFGNTPL 609
             G   I+  L+  G D  + +  G  P+
Sbjct: 292 RLGNISIVDALLDYGADPFIANKSGLRPV 320

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 45/182 (24%)

Query: 509 TNLLQGKESDLRLKQLQSDIT---------FHISKHEAELALKVNSAAYHGDLYQLEGLI 559
            N       +  L  L   +           H     + +     +A Y+ D+  +  ++
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDIL-MGWIV 233

Query: 560 RAGADPNRTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615
           +    P ++  + +       +        E +         +N +D+ G+T L  A + 
Sbjct: 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293

Query: 616 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHV 675
           GN      L                               L  G DP   +     P+  
Sbjct: 294 GNISIVDAL-------------------------------LDYGADPFIANKSGLRPVDF 322

Query: 676 AA 677
            A
Sbjct: 323 GA 324

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  115 bits (290), Expect = 2e-30
 Identities = 55/148 (37%), Positives = 74/148 (50%), Gaps = 31/148 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N KD  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A + G+     LL                               L  G D N +
Sbjct: 69  RTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNAK 97

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           D + RTPLH+AA  G   + KLL+EAGA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.7 bits (154), Expect = 5e-12
 Identities = 40/118 (33%), Positives = 52/118 (44%), Gaps = 33/118 (27%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G TPL  A + G+     LL                               L  G D N 
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNA 30

Query: 665 RDYDLRTPLHVAASEGLYL-MAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +D + RTPLH+AA  G +L + KLL+EAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNG-HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (283), Expect = 1e-29
 Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 33/145 (22%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G        DG +PLH AA  G+ E +  L+ KG D+N +   GNTPL  A K G+    
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 622 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 681
            LL                               L+ G D N R  D  TP H+A   G 
Sbjct: 59  KLL-------------------------------LAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 682 YLMAKLLVEAGASVFPKDRWGNTPL 706
           + + KLL   GA V  +    +   
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (251), Expect = 3e-25
 Identities = 38/129 (29%), Positives = 52/129 (40%), Gaps = 31/129 (24%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G   +++ L+  GAD N    DG +PLHLAA  G+ EI+  L+ KG D+N +   G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           NTP   A K G+     LL                                + G D N R
Sbjct: 76  NTPEHLAKKNGHHEIVKLL-------------------------------DAKGADVNAR 104

Query: 666 DYDLRTPLH 674
            +      H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 6e-15
 Identities = 38/127 (29%), Positives = 48/127 (37%), Gaps = 33/127 (25%)

Query: 595 GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKR 654
           G         GNTPL  A K G+      L                              
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKL------------------------------ 28

Query: 655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN 714
            LS G D N R  D  TPLH+AA  G   + KLL+  GA V  + + GNTP    +  G+
Sbjct: 29  -LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 715 KNLIKLL 721
             ++KLL
Sbjct: 88  HEIVKLL 94

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  110 bits (277), Expect = 2e-28
 Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 562 GADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA 620
           G+  +     D    L  AA  G ++ +  L+  G D+N KD +G TPL  A  +G+   
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 621 ASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 680
             +L                               L NG D N  D    TPLH+AA  G
Sbjct: 63  VEVL-------------------------------LKNGADVNAVDAIGFTPLHLAAFIG 91

Query: 681 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
              +A++L++ GA V  +D++G T  D     GN++L ++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  105 bits (266), Expect = 4e-27
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 31/145 (21%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G   ++  L+  GAD N  D  G +PL+LA + G+ EI+  L++ G D+N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            TPL  A   G+   A +L                               L +G D N +
Sbjct: 81  FTPLHLAAFIGHLEIAEVL-------------------------------LKHGADVNAQ 109

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVE 690
           D   +T   ++   G   +A++L +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  113 bits (284), Expect = 5e-28
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 39/188 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFL 591
           A    ++  +  L+  GAD                   Y G  PL LAA      I+ FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 592 IQKG---VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648
           +Q      DI+ +D+ GNT L   ++  ++   +          +   G           
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----------- 216

Query: 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 708
                ++          +    TPL +AAS G   +   +++                  
Sbjct: 217 ----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 709 GRMCGNKN 716
                + +
Sbjct: 266 AAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.9 bits (249), Expect = 2e-23
 Identities = 37/210 (17%), Positives = 59/210 (28%), Gaps = 42/210 (20%)

Query: 546 AAYHGDLYQLEGLIRA-------GADPNRTDYD-GRSPLHLA---ASRGYEEIMTFLIQK 594
           A    +  +LE L+           D    D + G++ L  A      G  + +  L+  
Sbjct: 20  AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79

Query: 595 GVDI-----------NLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA 643
                                G T L  AI+  N    +LLV+ GA +     G F    
Sbjct: 80  ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF--- 136

Query: 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG---ASVFPKDR 700
                                  Y    PL +AA      + K L++     A +  +D 
Sbjct: 137 --------------KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

Query: 701 WGNTPLDEGRMCGNKNLIKLLEDAKSTQLL 730
            GNT L       +  +            +
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMYNEI 212

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.5 bits (230), Expect = 8e-21
 Identities = 32/186 (17%), Positives = 52/186 (27%), Gaps = 45/186 (24%)

Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-------KGVDINLKD-NFGNTPLLEA 612
             A         R  +  A ++   + +  L+        +  D   KD   G T LL+A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 613 ---IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDL 669
              +  G +   +LL+      +  +                               Y  
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFV--------------------NASYTDSYYKG 101

Query: 670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDR--------------WGNTPLDEGRMCGNK 715
           +T LH+A       +  LLVE GA V                   +G  PL         
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 716 NLIKLL 721
            ++K L
Sbjct: 162 AIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
                  K  ++ Y+  L     L         T+  G +PL LAAS G   ++ +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 595 GVDINLKDNFGNTPLLEAIKYGN 617
            +               A  + +
Sbjct: 256 EIH-------EPECRHAAAHHHH 271

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score =  108 bits (272), Expect = 1e-27
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDG 98

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
               V       SFGE++++ N P+  T+       L  +D+ +F  II       RK+ 
Sbjct: 99  VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158

Query: 509 TNL 511
            + 
Sbjct: 159 ESF 161

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  106 bits (267), Expect = 5e-26
 Identities = 32/166 (19%), Positives = 58/166 (34%), Gaps = 31/166 (18%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-------------YDGRSPLHLAASRGYEEIMTFLI 592
           A     L  ++ L+  GAD +                Y G  PL LAA     +++T+L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 593 QKGV---DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
           +       +   D+ GNT L   +   ++                   S L   +  G  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADN---------------SPENSALVIHMYDGLL 201

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
            +  R+          ++   TPL +AA EG   + + +++   S 
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  105 bits (264), Expect = 1e-25
 Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 27/174 (15%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN-------------FGNTP 608
            A      Y G S LH+A  +   + +  L++ G D++L+               FG  P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 609 LLEAIKYGNDGAASLLVKEGASL-NVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY 667
           L  A         + L++      ++E   S   T +             + +     + 
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL-------------HALVMIADNS 186

Query: 668 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
              + L +   +GL  M   L          +  G TPL      G   + + +
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 95.6 bits (238), Expect = 5e-22
 Identities = 37/187 (19%), Positives = 57/187 (30%), Gaps = 43/187 (22%)

Query: 545 SAAYHGDLYQLEGLI--------RAGADPNRTDYDGRSPLHLAA---SRGYEEIMTFLIQ 593
           S    G   +L GL+                    G++ L  A      G    +  L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 594 KG-----------VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT 642
                             +   G++ L  AI+  +     LLV+ GA +++   G F   
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK 127

Query: 643 AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG---ASVFPKD 699
                                T  Y    PL +AA    + +   L+E     AS+   D
Sbjct: 128 ------------------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 700 RWGNTPL 706
             GNT L
Sbjct: 170 SLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 77.1 bits (190), Expect = 8e-16
 Identities = 32/176 (18%), Positives = 52/176 (29%), Gaps = 45/176 (25%)

Query: 570 YDGRSPLHLAASRGYEEIMTFLIQK--------GVDINLKDNFGNTPLLEAIKYGNDG-- 619
           +D R  L    SRG  E +T L++               + + G T L++A+    DG  
Sbjct: 1   FD-RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN 59

Query: 620 -AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAAS 678
                L++        +                               Y   + LH+A  
Sbjct: 60  ACIMPLLQIDKDSGNPK--------------------PLVNAQCTDEFYQGHSALHIAIE 99

Query: 679 EGLYLMAKLLVEAGASVFPKDR-------------WGNTPLDEGRMCGNKNLIKLL 721
           +      KLLVE GA V  +               +G  PL         +++  L
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
             Y G L     L         +++ G +PL LAA  G  EI   ++Q+        +  
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

Query: 606 N 606
           +
Sbjct: 255 H 255

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.5 bits (239), Expect = 6e-24
 Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 31/123 (25%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
           +GR+PLHLAA  G+ E++  L++ G D+N KD  G TPL  A + G+     LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 631 LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
                                         D N +D + RTPLH+AA  G   + KLL+E
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 691 AGA 693
           AGA
Sbjct: 90  AGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 94.3 bits (236), Expect = 2e-23
 Identities = 37/84 (44%), Positives = 53/84 (63%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N KD  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 606 NTPLLEAIKYGNDGAASLLVKEGA 629
            TPL  A + G+     LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G TPL  A + G+     LL++ GA                               D N 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGA-------------------------------DVNA 30

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           +D + RTPLH+AA  G   + KLL+EAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  101 bits (252), Expect = 7e-24
 Identities = 35/174 (20%), Positives = 56/174 (32%), Gaps = 46/174 (26%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFL 591
           A      + +E L+  GAD +                 Y G  PL LAA      I+ +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 592 IQKG---VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD 648
            + G    D+  +D+ GNT L   +   +              N  E   F+        
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIAD--------------NTRENTKFVTKMY---- 201

Query: 649 SDLLKRVLSNGIDPNT-------RDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
            DLL   L                + D  +PL +AA  G   + + ++    + 
Sbjct: 202 -DLL---LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 97.2 bits (242), Expect = 1e-22
 Identities = 40/235 (17%), Positives = 69/235 (29%), Gaps = 55/235 (23%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDY----DGRSPLHLAA---SRGYEEIMTFLI 592
            +   S      L  L  L+         ++     G++ L  A    S G  + +  L+
Sbjct: 12  IVSRGSPDGLEGL--LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 593 QKG-----------VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC 641
                                  G T L  AI+        LLV++GA ++ +  G F  
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 642 T----------------AVARGDSDLLKRVLSNGI---DPNTRDYDLRTPLHVAA----- 677
                            A       ++  +  NG    D   +D    T LH        
Sbjct: 130 PKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN 189

Query: 678 ----SEGLYLMAKLLVEAGASVFPK-------DRWGNTPLDEGRMCGNKNLIKLL 721
               ++ +  M  LL+   A +FP        +  G +PL      G   + + +
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 46/178 (25%)

Query: 569 DYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLKD----NFGNTPLLEA---IKYGN 617
            ++ R  L    SRG     E +++FL+     +  ++    + G T L +A   +  G 
Sbjct: 3   VFN-RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
           +    +L+                        ++ + + S   D     Y  +T LH+A 
Sbjct: 62  NDTIPILLDIAEKTG-----------------NMREFINSPFRD---VYYRGQTALHIAI 101

Query: 678 SEGLYLMAKLLVEAGASVFPKDR--------------WGNTPLDEGRMCGNKNLIKLL 721
                   +LLVE GA V  + R              +G  PL         +++  L
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.3 bits (154), Expect = 4e-11
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 21/110 (19%)

Query: 546 AAYHGDLYQLEGLIRAG---ADPNRTDYDGRSPLHLAASRGYE---------EIMTFLIQ 593
           AA     + +  L   G   AD  R D  G + LH   +             ++   L+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 594 KGVDIN-------LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEA 636
           K   +        L +N G +PL+ A K G  G    +++         A
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI--ADAAA 254

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 7/72 (9%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPN-------RTDYDGRSPLHLAASRGYEEI 587
           H                    + L+   A            + DG SPL +AA  G   I
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

Query: 588 MTFLIQKGVDIN 599
              +I++ +   
Sbjct: 241 FQHIIRREIADA 252

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 96.0 bits (239), Expect = 1e-23
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVG-IEEN 447
           + +VPLF+      ++ I  RL    F     ++ +G+ V+++ F+  G+LE V      
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQP---------YTVQVCELCRLLRIDKQSFTNIID 498
                 S L      G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 499 IY 500
            +
Sbjct: 128 QF 129

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.0 bits (232), Expect = 7e-23
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 34/144 (23%)

Query: 579 AASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS 638
            +S  +    + L+ +G  +          LLEA + G D    +L+  GA         
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGA--------- 48

Query: 639 FLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 698
                                 D   +D +  TPLH+AA  G   + KLL+EAGA V  +
Sbjct: 49  ----------------------DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 699 DRWGNTPLDEGRMCGNKNLIKLLE 722
           D++G T  D     GN++L ++L+
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.5 bits (228), Expect = 2e-22
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
            + H   +   GL+  G+       D    L  AA  G ++ +  L+  G D+  KD  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           +TPL  A + G+     LL++ GA                               D   +
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGA-------------------------------DVXAQ 86

Query: 666 DYDLRTPLHVAASEGLYLMAKLL 688
           D   +T   ++   G   +A++L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 86.2 bits (214), Expect = 4e-20
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +  VPLF+      + +IV  L       G VI   G   D+++FV  G +  V      
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV-SVATPNPV 71

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
                  L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 72  E------LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 509 TNLLQGKESDLRLKQLQS 526
              L+      R     S
Sbjct: 126 KTALE------RRGAAAS 137

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 87.9 bits (218), Expect = 4e-20
 Identities = 24/158 (15%), Positives = 57/158 (36%)

Query: 356 RLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFF 415
              +  +     +  D+     A       L  + K+ LF   S+E +  +   +     
Sbjct: 8   HHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAA 67

Query: 416 LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY 475
                ++ +G+  D L  +  G++  +    N     ++ +   +  GE+S++  +P+  
Sbjct: 68  PRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSA 127

Query: 476 TVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
           +           + + +   ++      G KVL  LLQ
Sbjct: 128 SCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ 165

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + + PLF     E   ++   + E     G+ +  +G+  D+LY V  GK++      +G
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            E+ ++ + P+   GE+S+    P+  T       +LL +        +++       +L
Sbjct: 67  RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126

Query: 509 TNLLQGKESDLRLKQLQSDITFHISKHEAELALK 542
             + +      RL++    +        ++L   
Sbjct: 127 RAVAR------RLRKTNDAM--------SDLVFS 146

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 83.1 bits (206), Expect = 5e-19
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
            +P   ++  S+ L    I      K      I +IV  ++   +     I+++G+V   
Sbjct: 7   TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSL 66

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           +Y +  GK+E   + + G +  +  + P   FGE++IL N  +  TV+     +L  ID+
Sbjct: 67  VYVMEDGKVE---VTKEGVK--LCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR 121

Query: 491 QSFTNIID 498
           Q F  I+ 
Sbjct: 122 QCFQTIMM 129

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 88.0 bits (218), Expect = 9e-19
 Identities = 60/424 (14%), Positives = 108/424 (25%), Gaps = 107/424 (25%)

Query: 79  FILIWAVYSSIFTPV---EFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYR 135
            +        +                  L  L  V   A+L  +               
Sbjct: 12  PLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAA------------T 59

Query: 136 LICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFH 194
           L+ +R    +   R+    ID+ + +     +   G               + K  +   
Sbjct: 60  LLKRRAG--VVRDRTPKIAIDVLAVLVPLAAFLLDG----SPDWSLYCAVWLLKPLRDST 113

Query: 195 KMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSY 254
                     +  R++   A  L        +  +         E               
Sbjct: 114 FFP-------VLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIER-------------- 152

Query: 255 ADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNM 314
            D +   F  S   +M+ +VVT++T GYGD    +    V         M+ G  + G  
Sbjct: 153 -DIQPEKF-GSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVL----AGAVMMSGIGIFGLW 206

Query: 315 TALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPI 374
             ++  G              + + R                                  
Sbjct: 207 AGILATG------------FYQEVRRGD-------------------------------- 222

Query: 375 SIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFV 434
                         +  VPLF+      + +IV  L       G VI   G   D+++FV
Sbjct: 223 -------FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFV 275

Query: 435 CLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
             G +                L P + FGE++++   P+  TV       LL +    F 
Sbjct: 276 VEGSVSVATPNPV-------ELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQ 328

Query: 495 NIID 498
            +  
Sbjct: 329 MLCS 332

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++   LF+  S   + +++          G  +  +G      Y++  G ++   +   G
Sbjct: 14  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
            E  +   +  ++F E  +  + P    T Q     +L R   +++   +         +
Sbjct: 74  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALK 542
           L  L        RL Q   +I          L+LK
Sbjct: 134 LAKLST------RLHQRIDEI--------ETLSLK 154

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 81.6 bits (202), Expect = 3e-18
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G++ +V +    
Sbjct: 40  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM-DVYVNNE- 97

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
              + + +    SFGE++++   P+  TV+     +L  ID+ S+  I+
Sbjct: 98  ---WATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 84.1 bits (208), Expect = 3e-18
 Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444
           Y   ++ +P+ K  ++    ++   L  + + PGE I+ +G+  +  Y +  G    V +
Sbjct: 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG---AVDV 179

Query: 445 EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            + G +  ++ L  +  FGEV++L ++P+  TV   +  ++  + K  F  ++
Sbjct: 180 SKKG-QGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I    LF    S+    ++  L E+    G  I+++G+  D  Y V  G ++      N 
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD---FYVND 65

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +  V+   P SSFGE++++ N P+  TV     C L  +D+ +F  I+       R + 
Sbjct: 66  NK--VNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123

Query: 509 TNLL 512
            +LL
Sbjct: 124 DDLL 127

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 80.8 bits (200), Expect = 4e-18
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE---EV 442
              +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G +E     
Sbjct: 5   PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN 64

Query: 443 GIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFC 502
           G   +     V  + P + FG  S++       + +  +  R++ I+      + +    
Sbjct: 65  GGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQA 124

Query: 503 DGRKVLTNLLQ 513
            G+ ++ N+  
Sbjct: 125 LGQVLMNNVAA 135

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 84.2 bits (208), Expect = 8e-18
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE-EVG 443
           Y+ +++ VP F+    E ++++   L E  +  GE I+ +G   D  + +  GK+     
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214

Query: 444 IEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
              N    ++  L     FGE ++     +   V   E    L ID+ SF ++I
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 76.5 bits (188), Expect = 3e-15
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I      K      I +IV  ++   +     I+++G+V   +Y +  GK+E   + + G
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEG 97

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +  +  + P   FGE++IL N  +  TV+     +L  ID+Q F  I+           
Sbjct: 98  VK--LCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 155

Query: 509 TNLLQ 513
              L+
Sbjct: 156 MEFLK 160

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 85.6 bits (211), Expect = 8e-18
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G   ++ ++ +G
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGT-FDIYVKCDG 205

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
               V       SFGE++++ N P+  T+       L  +D+ +F  II       RK+ 
Sbjct: 206 VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 265

Query: 509 TNLL 512
            + +
Sbjct: 266 ESFI 269

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 84.4 bits (208), Expect = 2e-17
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE---- 440
           Y  +IE +P  K        ++V  +  + +  GE I+ +G++ D  + V  G+++    
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 441 --EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  E      ++       FGE++++ N P+  +       + L +D Q+F  ++
Sbjct: 325 RKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE-EVG 443
           Y  ++ KV + +         +   L    F  G+ I+ +G   D+ + +  G       
Sbjct: 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQR 214

Query: 444 IEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
             EN     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++
Sbjct: 215 RSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVL 268

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G++ +V +    
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM-DVYVN--- 96

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
             ++ + +    SFGE++++   P+  TV+     +L  ID+ S+  I+       RK+ 
Sbjct: 97  -NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155

Query: 509 TNLLQ 513
              L 
Sbjct: 156 EEFLS 160

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.1 bits (205), Expect = 4e-17
 Identities = 36/309 (11%), Positives = 84/309 (27%), Gaps = 75/309 (24%)

Query: 488 IDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS-- 545
                  N + +     ++ +   L G ++  +++QL      H +++  +L    +   
Sbjct: 30  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 89

Query: 546 ---------AAYHGDLYQLE---GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
                    AA  G    L+    L+ +         +      LAA  G+  ++  L +
Sbjct: 90  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 594 KGVDINLKD--NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS-----FLCTAVAR 646
                 +             A + G+    + L +   +       +     F   AV R
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209

Query: 647 GDSDLLKRVLSNGIDPNTRDY----------------------DLRTPLHVAASEGL--- 681
           G  +++  +L   +     +                       ++     ++  +G+   
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269

Query: 682 -----------------------------YLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
                                        +L++   ++A A         N  L      
Sbjct: 270 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

Query: 713 GNKNLIKLL 721
           GN+    LL
Sbjct: 330 GNQGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 34/207 (16%), Positives = 58/207 (28%), Gaps = 35/207 (16%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY--DGRSPLHLAASR-GYEEIMTFLIQKGVDINLKD 602
           AA +G L+ L  L              +       AA   G+  ++ FL+   V +   +
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE 229

Query: 603 NFG------------------NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAV 644
                                   + +A K  N      LV +   L        L   +
Sbjct: 230 IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYM---LRNLI 286

Query: 645 ARGDSDLLKRV--------LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
            R D  LL  +        +       T   D    L +A   G      LL+   + + 
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346

Query: 697 PKDRWGNTPLDEGRMCGNKNLIKLLED 723
                 N  ++E    G  +L  +  +
Sbjct: 347 LTKA-NNYYINETG--GRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 25/161 (15%), Positives = 45/161 (27%), Gaps = 29/161 (18%)

Query: 527 DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD--------------- 571
           ++   +      LA        +G+ Y    + R                          
Sbjct: 213 NVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 272

Query: 572 -----GRSPLHLAASRGYEEIMTFL--------IQKGVDINLKDNFGNTPLLEAIKYGND 618
                G   L     R  E ++  +        I+            N  L  A++ GN 
Sbjct: 273 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332

Query: 619 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNG 659
           GA +LL+   + L + +A ++       G  DL    L + 
Sbjct: 333 GACALLLSIPSVLALTKANNYYI-NETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 6e-08
 Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 11/93 (11%)

Query: 546 AAYHGDLYQLEGL--------IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
                D   L+ +        I+A A       D    L LA   G +     L+     
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS 630
           + L               G     ++ ++    
Sbjct: 345 LALTK---ANNYYINETGGRLDLRAVALEHHHH 374

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 77.0 bits (190), Expect = 5e-17
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE 446
           ++ ++P F   +     ++   +  E     G +I+E G  +D  Y +  G    V I  
Sbjct: 17  FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG---TVEISH 73

Query: 447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNII 497
              +  V  L   +SFG    L        V+     C+ + I +Q +  I+
Sbjct: 74  PDGK--VENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 82.5 bits (203), Expect = 8e-17
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 440
           + +Y  ++ KV + +         +   L    F  GE I+ +G   D  Y +  G    
Sbjct: 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASV 302

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                 N     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++
Sbjct: 303 LQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 71.7 bits (175), Expect = 3e-13
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 362 SYTEASVLQDIPISIRAKISQT-LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEV 420
            YTE   +  +   I             I K  LF        + I   +     + GE 
Sbjct: 104 VYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGET 163

Query: 421 IMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480
           ++++GN  D  Y V  G++ +V +      ++V+ +    SFGE++++   P+  TV+  
Sbjct: 164 VIQQGNEGDNFYVVDQGEV-DVYVN----GEWVTNISEGGSFGELALIYGTPRAATVKAK 218

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512
              +L  ID+ S+  I+       RK+    L
Sbjct: 219 TDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +
Sbjct: 7   ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I        ++
Sbjct: 67  GRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQL 126

Query: 508 LTNLLQGKESDLRLKQLQSDIT 529
           L  L +      RL++  +++ 
Sbjct: 127 LRVLAR------RLRRTNNNLA 142

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE 445
           L  +++ PLF+    + + + +  + E  F P E+++E+    + L+ V  G +    + 
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 446 ENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505
             G E  +  ++     GE ++L +  +  +V+     R L + ++ F  I+  +     
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124

Query: 506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS--AAYHGDLYQLEG 557
            +   L +      R+  L  ++                +       +LY+   
Sbjct: 125 NLAEMLAR------RVTFLNDEL--------IAFGQNTEAALTHVFANLYRQRL 164

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++  PLF G + E ++  +       +  G+ I  +G++   LY V  GK+        G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            E  ++ L P   FGE+S+L    +  +    E   LL + ++ +  +I         + 
Sbjct: 61  QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLA 120

Query: 509 TNLLQGKESDLRLKQLQSDIT 529
             L +      RL++   ++ 
Sbjct: 121 ALLAR------RLREADLELD 135

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 10/157 (6%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEV 442
               + ++PLF+G   E    I+  ++LH      GE I++ GN   QL F+  G++  V
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 443 GIEENGTEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYF 501
              +      +  +         S+         +         + I K    + +  Y 
Sbjct: 76  TNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY- 134

Query: 502 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
                   N +       R + L S +       + +
Sbjct: 135 ---DIFRLNYM--NIVSNRAQNLYSRLW-DEPTLDLK 165

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 73.8 bits (182), Expect = 5e-15
 Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 8/151 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +    +        + +++       F  GE++  + + ++ +  +  G L+   + ENG
Sbjct: 1   MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
               +  + P        I  + P+ P  V   E  ++L I K+ F +++       R++
Sbjct: 61  KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKD----REL 116

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           L   L  K+     + +   +   ++     
Sbjct: 117 LLFFL--KDVSEHFRVVSEKLF-FLTTKTLR 144

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 75.0 bits (184), Expect = 5e-15
 Identities = 29/174 (16%), Positives = 47/174 (27%), Gaps = 40/174 (22%)

Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY------DGRSPLHLAASRG--- 583
               A     +  A    D++ L      G D               + LHLA       
Sbjct: 124 HADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT 183

Query: 584 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA 643
              I+ FL+Q   +++ +   G+T L       N     LL++  A              
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-------------- 229

Query: 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP 697
                                 +    TPL +A         +LL +A +  F 
Sbjct: 230 -----------------SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 72.3 bits (177), Expect = 4e-14
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 3/100 (3%)

Query: 638 SFLCTAVARGDSDLLKRV---LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + L  AV   D   L  V   + N  + + +     T LH           KLL+   AS
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPH 734
           +   +  G TPLD  +   +++  +LL  A S +     H
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 270

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 9e-06
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 641 CTAVARGDSDLLKRVLSNGIDPN------TRDYDLRTPLHVAASEG---LYLMAKLLVEA 691
           C AV   D   L +  ++G+D               T LH+A          +   LV+ 
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 194

Query: 692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
             ++  +   G+T L    +  N   +KLL
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 75.4 bits (185), Expect = 6e-15
 Identities = 31/155 (20%), Positives = 46/155 (29%), Gaps = 40/155 (25%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY------DGRSPLHLAASRGYE---EIMTFLIQKGV 596
           A  + DL  +      G D  +              LHLA     +    ++ F+IQ G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 597 DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVL 656
            ++ K   GNT L  A  Y       LL+K  A                           
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--------------------------- 250

Query: 657 SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 691
                  T +    T L +A  +      +LL +A
Sbjct: 251 ----LVGTVNEAGETALDIARKKHHKECEELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 2e-14
 Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 11/136 (8%)

Query: 610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT--------AVARGDSDLLKRV---LSN 658
             AI   +  +       G        G             AV   +   L  V   + N
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215

Query: 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI 718
           G   + +  D  T LH AA        KLL++  A V   +  G T LD  R   +K   
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

Query: 719 KLLEDAKSTQLLEFPH 734
           +LLE A++       H
Sbjct: 276 ELLEQAQAGTFAFPLH 291

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 72.3 bits (177), Expect = 7e-14
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
             A    L  ++ +I+ G   +    DG + LH AA     + +  L++    +   +  
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 258

Query: 605 GNTPLLEAIKYGNDGAASLLVK 626
           G T L  A K  +     LL +
Sbjct: 259 GETALDIARKKHHKECEELLEQ 280

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
                L +    + ++ ++ +     +  GE +  +      ++ V  G ++   +   G
Sbjct: 13  ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
           +E  VS      SFGE   L N P P + +    C ++ I    F +++         +L
Sbjct: 73  SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISIL 132

Query: 509 TNLLQGKESDLRLKQLQSDITFHISKHEAE 538
                       L  L + +   +      
Sbjct: 133 ATTFG------HLHSLVAQLE-QLKAQTGA 155

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 8/151 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++   LF+  S   + +++          G  +  +G      Y++  G ++   +   G
Sbjct: 11  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
            E  +   +  ++F E  +  + P    T Q     +L R   +++   +         +
Sbjct: 71  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           L  L        RL Q   +I   +S   A 
Sbjct: 131 LAKLST------RLHQRIDEIE-TLSLKNAT 154

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 7/143 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            I  + L K  +   +   +   H   +     ++ +G   + LY++  G +  +  +E 
Sbjct: 47  DIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEE 106

Query: 448 GTEDYVSYLHPNSSFGEVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506
           G E  +SYL+     GE+ +      +   V+    C +  I  + F  +I +      +
Sbjct: 107 GKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 166

Query: 507 VLTNLLQGKESDLRLKQLQSDIT 529
           +   + +      RL+     + 
Sbjct: 167 LSAQMAR------RLQVTSEKVG 183

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 73.2 bits (179), Expect = 5e-14
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444
            +  +  + +F+GC +E +  +   +       G+V++ +G        +  G   EV  
Sbjct: 11  RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSA-EVSH 69

Query: 445 EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD 503
             +     ++   P    GE+++L + P+  TV   E        + +F  ++ I    
Sbjct: 70  VGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVG 128

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.4 bits (174), Expect = 3e-13
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 516 ESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP 575
            +        +D+ +     +    L    A     L   E L++ GA+ N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 576 LHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLV 625
           LH A   G+  +    +++G D+  +D+ G  PL  A++  N    +LL 
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 38/166 (22%), Positives = 55/166 (33%), Gaps = 35/166 (21%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRT--DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           ++ +   L  +   +  GAD N      D  +PL  A +        FL+Q G ++N  D
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDP 662
           + G  PL  A   G+ G A L +K GA                               D 
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGA-------------------------------DL 294

Query: 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDE 708
             RD + R PL +A       +  LL  A        +      DE
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ--GQAGDE 338

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 65.2 bits (158), Expect = 3e-11
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 620 AASLLVKEGASLNV----EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHV 675
             +  +  GA +N     ++  + L  A A       + +L NG + N  D   R PLH 
Sbjct: 215 TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274

Query: 676 AASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHG 735
           A   G   +A L ++ GA +  +D  G  PL       N +++ LL  AK  +       
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQ 334

Query: 736 FQD 738
             D
Sbjct: 335 AGD 337

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 38/222 (17%), Positives = 67/222 (30%), Gaps = 44/222 (19%)

Query: 69  DNRWYRAWTKFILIWAVYSSIFTPVE--FGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           D   +      +   A+ S I   VE            LY++D++  I    D       
Sbjct: 3   DVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAY---- 58

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
                   R      P    Y++ + + ++ + +P  L+    G    +     +RL R 
Sbjct: 59  --------RAYKSGDP--AGYVKKT-LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRF 107

Query: 187 RKVSQFFHKMEKDIRINYMFSR---IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTW 243
            ++     +  K +      +       L    +      A   Y +    P        
Sbjct: 108 LRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNS------ 161

Query: 244 IGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285
                               KS   +++ +VVT TTVGYGDV
Sbjct: 162 -----------------SI-KSVFDALWWAVVTATTVGYGDV 185

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451
           + L K  +   +   +   H   +     ++ +G   + LY++  G +  +  +E G E 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 452 YVSYLHPNSSFGEVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTN 510
            +SYL+     GE+ +      +   V+    C +  I  + F  +I +      ++   
Sbjct: 61  ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ 120

Query: 511 LLQGKESDLRLKQLQSDI 528
           + +      RL+     +
Sbjct: 121 MAR------RLQVTSEKV 132

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 70.7 bits (172), Expect = 7e-13
 Identities = 45/348 (12%), Positives = 99/348 (28%), Gaps = 24/348 (6%)

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +R+ +    + +    +    +      +++  +               +       +  
Sbjct: 142 LRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIA 201

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
                   + D  Y         K+Y      + +    +       V+ R     +   
Sbjct: 202 ILSRAPHMIRDRKY-------HLKTYRQCCVGTELVDWMIQQTS--CVHSRTQ--AVGMW 250

Query: 301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
              +  G     +            +F D   +               +     L L   
Sbjct: 251 QVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQM 310

Query: 361 SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP-GE 419
                  ++   P   R      +    +  +      S+    ++   L  E     G 
Sbjct: 311 GPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT 370

Query: 420 VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ- 478
           V+  +G      Y +  G +  V I   G    V  LH    FG+++++ + P+  ++  
Sbjct: 371 VLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASIVL 426

Query: 479 VCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQS 526
             + C  LR+DK+ F  I+       R V  N ++ KE D  +  L+ 
Sbjct: 427 REDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHDQDVLVLEK 467

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            ++ V  F+      + QI +  + E    G  +  +G++    Y V  G L +V + E 
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL-DVKVSET 101

Query: 448 GTED---YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            +      +  L   ++FGE SIL N P+  T+   E   LLRI+++ F  + + Y
Sbjct: 102 SSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451
             ++   + E    +   +          +  +G++ + L+++  GK++ +     G   
Sbjct: 15  RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74

Query: 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 511
               + P   FG            T    E  ++L I  ++   ++       R  L  L
Sbjct: 75  ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKAL 134

Query: 512 LQGKESDLRLKQLQSDITFHISKHEAE 538
            +       L   +      +++    
Sbjct: 135 AK------ELGYAERRTV-TLTQKHVR 154

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +   +        E +           F  G  ++  G  +  + F+  GK++   I E+
Sbjct: 10  FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G+E  + Y   NS  G++               E  R     ++S   +         ++
Sbjct: 70  GSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEI 126

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
             N L       ++      +   ++ +   
Sbjct: 127 FKNYLT------KVAYYARQVA-EMNTYNPT 150

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRT------DYDGRSPLHLA---ASRGYEEIMTFLIQKG 595
           +A  + DL  +      G D  +              LHLA   A++    ++ F+IQ G
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197

Query: 596 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVAR 646
             ++ K   GNT L  A  Y       LL+K  A +            +AR
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
             A    L  ++ +I+ G   +    DG + LH AA     + +  L++    +   +  
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 239

Query: 605 GNTPLLEAIKYGNDGAASLLVK 626
           G T L  A K  +     LL +
Sbjct: 240 GETALDIARKKHHKECEELLEQ 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 8e-12
 Identities = 99/643 (15%), Positives = 180/643 (27%), Gaps = 174/643 (27%)

Query: 111 VGQIAFLF-DIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKAS 169
            G+  + + DI+  F  A+ D+      CK      +         + S    D I  + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDN----FDCKDVQDMPK--------SILSKEEIDHIIMSK 58

Query: 170 GRKEAVRYLLWI-RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFY 228
                   L W     +   V +F   +E+ +RINY F  ++  I  E            
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKF---VEEVLRINYKF--LMSPIKTE--------QRQP 105

Query: 229 YLATTLPPEQEGYTWIGSLKMGDYS------YADFRE----------------IGFWKSY 266
            + T +  EQ    +  +     Y+      Y   R+                +G  K++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 267 ITSMYASVVTMTTVGYGDVHAVNLR-----EMVFIM---IYVSFDMILGAYLIGNMTALI 318
           +         +       +  +NL+     E V  M   +    D    +    + + + 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIK 224

Query: 319 VKGSKTEKFRDKMTDLMKYINRNR----LGRDIRD-QIIGHLRLQYESSYT--EASVLQD 371
           +   +    + ++  L+K          L  ++++ +      L  +   T     V   
Sbjct: 225 L---RIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 372 IPISIRAKIS-----QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEF--FLP------G 418
           +  +    IS      TL     E   L      ++++     L  E     P       
Sbjct: 281 LSAATTTHISLDHHSMTLTPD--EVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 419 EVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN---SSFGEVSIL---CNIP 472
           E I +     D    V   KL  +       E  ++ L P      F  +S+     +IP
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 473 QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHI 532
                 +  L  +     +S   ++       +  L    Q KES + +  +  ++   +
Sbjct: 389 T----IL--LSLIWFDVIKSDVMVVVNKLH--KYSLVE-KQPKESTISIPSIYLELKVKL 439

Query: 533 SKHEAELALKVNSAAYHGDL---YQLEGLIRAGADPNRTDYDGRSPL------------H 577
                      N  A H  +   Y +         P   D D   P             H
Sbjct: 440 E----------NEYALHRSIVDHYNI---------PKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 578 LAASRGYEEIMTF-------------LIQKGVDINLKDNFGNTPLLEAIKYG-----NDG 619
           L      E +  F             +       N   +  NT L +   Y      ND 
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKFYKPYICDNDP 539

Query: 620 AASLLVKEGASLNVEEAGSFLCTA---VARGD-SDLLKRVLSN 658
               LV             FL      +     +DLL+  L  
Sbjct: 540 KYERLVN--------AILDFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 74/524 (14%), Positives = 147/524 (28%), Gaps = 166/524 (31%)

Query: 354 HLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEE 413
           H  + +E+   +    +DI                ++          +    I+ +  EE
Sbjct: 4   HHHMDFETGEHQYQY-KDILSVFEDAFVDNFDCKDVQ----------DMPKSILSK--EE 50

Query: 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV-SYLHPNSSF---------- 462
                + I+   + V     +    L      E   + +V   L  N  F          
Sbjct: 51  I----DHIIMSKDAVSGTLRL-FWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 463 ----------GEVSILCNIPQ---PYTV----QVCELCRLLRIDKQSFTNIIDIY----F 501
                      +   L N  Q    Y V       +L + L   + +  N++ I      
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVL-IDGVLGS 161

Query: 502 CDGRKVLTNLLQGKESDLRLKQLQSDITFHI------SKHEAELALKVNSAAYHGDLYQL 555
             G+  +   +          ++Q  + F I      + +  E  L+            L
Sbjct: 162 --GKTWVALDV------CLSYKVQCKMDFKIFWLNLKNCNSPETVLE-----------ML 202

Query: 556 EGLIRAGADPN---RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK--DNFGNTPLL 610
           + L+    DPN   R+D+     L + + +   E+   L  K  +  L    N  N    
Sbjct: 203 QKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 611 EAIKYG-------NDG--AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGID 661
            A                   L       ++++     L     +    LL + L     
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYL----- 311

Query: 662 PNTRDYDLR------TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK 715
            + R  DL        P  ++      ++A+ + +          W N      +     
Sbjct: 312 -DCRPQDLPREVLTTNPRRLS------IIAESIRD------GLATWDNW-----KHVNCD 353

Query: 716 NLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQNI 775
            L  ++E   S  +L       + A+ R    + +VFP        S        IP  +
Sbjct: 354 KLTTIIE--SSLNVL-------EPAEYRKMFDRLSVFP-------PS------AHIPTIL 391

Query: 776 KDLIKTAAEQLDFRGGDCILSSEGGKILDVDMINDDQKLYLIQE 819
             L               ++  +  K   + ++N   K  L+++
Sbjct: 392 --L--------------SLIWFDVIKSDVMVVVNKLHKYSLVEK 419

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 63.4 bits (155), Expect = 2e-11
 Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +    PL+   ++     I   L  +    G +I         L  V  G+L    + + 
Sbjct: 4   FENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDE 63

Query: 448 GTEDYVSYLHPNSS--FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505
           G E  +  L            I+ +I    T++  +   L  I  + +  I+        
Sbjct: 64  GREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN 123

Query: 506 KVLTNLLQGKESDLRLKQLQSDI 528
                +        R   +   I
Sbjct: 124 YTNELMAT------RFSDVMWLI 140

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 18/153 (11%)

Query: 389 IEKVPLFKGCSSEFINQIV----------IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGK 438
              VP            +                E F   + I   G+  +++YF+  G 
Sbjct: 12  SGLVPRGSHMIVTQDKALANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGA 71

Query: 439 LEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY--TVQVCELCRLLRIDKQSFTNI 496
           ++   + E G E  V+ L  NS FG +S+L                  LL    +     
Sbjct: 72  VKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQA 131

Query: 497 IDIYFCDGRKVLTNLLQGKESDLRLKQLQSDIT 529
           +         +L  L        R+ Q +  I 
Sbjct: 132 LKENPELSMLMLRGLSS------RILQTEMMIE 158

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 18/155 (11%), Positives = 47/155 (30%), Gaps = 5/155 (3%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE 445
              +          +  I + +   H   +     +   G+    LY+V  G +  +  E
Sbjct: 10  TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEE 69

Query: 446 ENGTEDYVSYLHPNSSFGEVSILC-NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 504
           ++  E  + Y       GE+ +   +  +   ++    C L  I  +    +        
Sbjct: 70  DDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPD 129

Query: 505 R-KVLTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
             ++L  +    +   RL       +  ++  +  
Sbjct: 130 APRILYAIG--VQLSKRLLDTTRKAS-RLAFLDVT 161

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 257 FREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316
           F  I    S+  S+Y + VT+ TVGYGD        M F    +   +   A  +  +  
Sbjct: 21  FHFIEGE-SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE 79

Query: 317 LIV 319
            ++
Sbjct: 80  FLI 82

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 15/151 (9%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            +    L +  +SE  + ++    E+ +    ++       + ++ V  G++  V +   
Sbjct: 5   RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRV-RVYLAYE 63

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
             E  ++ L     F   +          +Q  E   +L  D ++F NI+  +      +
Sbjct: 64  DKEFTLAILEAGDIFCTHT-------RAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNM 116

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           +  L         LK   + I   +   +A 
Sbjct: 117 VKVLGD------LLKNSLTIIN-GLVFKDAR 140

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
           S+  S+Y + VT+ TVGYGD        M F +  +   +   A  +  +   ++   + 
Sbjct: 45  SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104

Query: 325 EKFRDKMTDLMK---YINRNRLGRDIRDQIIGH 354
           +          +       +    +   ++ G 
Sbjct: 105 KLMGLIDVAKSRHVVICGWSESTLECLRELRGS 137

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 56.1 bits (136), Expect = 6e-09
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 17/145 (11%)

Query: 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT 449
            +  +     S            +    G ++       + ++ V  G+L  V +     
Sbjct: 3   PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRL-RVYLVGEER 61

Query: 450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509
           E  + YL     F   S          V+  E   +   D ++F   +         ++ 
Sbjct: 62  EISLFYLTSGDMFCMHS-------GCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIA 114

Query: 510 NLLQGKESDLRLKQLQ---SDITFH 531
            L +       L        D+ FH
Sbjct: 115 ILGR------ALTSCMRTIEDLMFH 133

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             I ++Y SVVT+TTVGYGD         +F ++Y+   + L    I  +   +   S  
Sbjct: 32  RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91

Query: 325 EKFRDK 330
                +
Sbjct: 92  SNLVPR 97

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 19/134 (14%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458
             + +++++   H   +     I+  G+  + L+F+  G +  +  +++G E  + YL+ 
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 459 NSSFGEVSILCNI----PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514
              FGE+ +         +   V+    C +  I    F  +          + + +   
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD- 120

Query: 515 KESDLRLKQLQSDI 528
                RL++    +
Sbjct: 121 -----RLRKTTRKV 129

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             I ++Y SVVT+TTVG G+         +F ++Y+   + L    I  +   +   S  
Sbjct: 49  RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108

Query: 325 EKFRDK 330
                +
Sbjct: 109 SNLVPR 114

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 55.1 bits (132), Expect = 6e-08
 Identities = 35/287 (12%), Positives = 91/287 (31%), Gaps = 50/287 (17%)

Query: 91  TPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS 150
           + + +      +   ++++ +  I F F+ ++            R      P    +  +
Sbjct: 227 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLV------------RFFA--CPSKAGFFTN 272

Query: 151 SF-IIDLFSCMPW--DLIYKASGRKEA--------VRYLLWIRLYRVRKVSQFFHKMEKD 199
              IID+ + +P+   +    S +           V+    +R+ R+ K+S+    ++  
Sbjct: 273 IMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQIL 332

Query: 200 IRINYM-FSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR 258
            +        +  LI        + +   Y+        Q                    
Sbjct: 333 GQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQ-------------------- 372

Query: 259 EIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318
               + S   + + +VV+MTTVGYGD+    +   +   +     ++  A  +  + +  
Sbjct: 373 ----FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428

Query: 319 VKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTE 365
                 E   ++    ++  +  ++      +         +S Y E
Sbjct: 429 NYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYME 475

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I  +  F   + E    +      +     E +++ G +    YFV  G L    I+E G
Sbjct: 9   INHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKG 68

Query: 449 TEDYVSYLHPNSSFGEV-SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY--FCD-G 504
            E    +   N    +  +     P  + +Q  E C LL I      N+ +         
Sbjct: 69  IEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYF 128

Query: 505 RKVLTNLLQGKESDLRLKQLQS 526
           R V        +   + + + S
Sbjct: 129 RLVYQKSFAAAQLRSKFQHMYS 150

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469
           +  + F   E+I  + +  +   F+  G  +   I ENGT   + Y           I  
Sbjct: 18  IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDT 77

Query: 470 NIPQPY--TVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQ-S 526
                Y     + E      I       ++             + Q  +  +     + +
Sbjct: 78  ETSVGYYNLEVISEQATAYVIKINELKELLSKNL----THFFYVFQTLQKQVSYSLAKFN 133

Query: 527 DITFH 531
           D + +
Sbjct: 134 DFSIN 138

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             + ++Y SVVT+TTVG G+         VF ++Y    + +G  L+      +    + 
Sbjct: 52  RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILY----IFIGIGLVFGFIHKLAVNVQL 107

Query: 325 EKF--RDKMTDLMKYINRNRLGRDIRDQIIGHLR 356
                  K       +        I  ++  H R
Sbjct: 108 PSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSR 141

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLI 311
            +  D  E     S+  + + SV TM T+GYG +  +       + +     M+  A   
Sbjct: 69  LACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128

Query: 312 GNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGR--DIRDQIIGHLRLQYESSYTEAS 367
             + A   + +    F  +M           + R  ++R + I    +      +E S
Sbjct: 129 SLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEIS 186

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 49.8 bits (118), Expect = 4e-06
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            ++ V  F+      + QI +  + E    G  +  +G++    Y V  G L+    E +
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102

Query: 448 GTED--YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID---IYFC 502
             +D   +  L   ++FGE SIL N P+  T+   E   LLRI+++ F  + +    Y  
Sbjct: 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKH 535
                   +++   ++ R+   ++  +  I + 
Sbjct: 162 GLLAPPYGVMETGSNNDRIPDKENVPSEKILRA 194

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 16/126 (12%)

Query: 406 IVIRLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463
           +        F  G+VI+  G     D+ Y V  G +    ++E G    +  + P   FG
Sbjct: 1   MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFG 60

Query: 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQ 523
           E ++     + Y  +     RL  + +     ++       + +  +L Q       L +
Sbjct: 61  EEALFGQ-ERIYFAEAATDVRLEPLPENPDPELL-------KDLAQHLSQ------GLAE 106

Query: 524 LQSDIT 529
               I 
Sbjct: 107 AYRRIE 112

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
            SY  +++ SV T TTVGYGD + V               M  G  +   +TA +   
Sbjct: 39  ISYPDAIWWSVETATTVGYGDRYPVTEEGRKV----AEQVMKAGIEVFALVTAALATD 92

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSK 323
            +Y  +++ SV T TTVGYGD++ V L   +         M+ G    G +TA +     
Sbjct: 39  ITYPRALWWSVETATTVGYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALATWF- 93

Query: 324 TEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
             + +++    ++  +  +   +   +    L  +++
Sbjct: 94  VGREQERRGHFVR--HSEKAAEEAYTRTTRALHERFD 128

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQP 474
           F   E I  +G     LY +  G +  V +  +G    + ++ P   FGE + L      
Sbjct: 4   FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEA-LEGKAYR 62

Query: 475 YTVQVCELCRLLRIDKQSF 493
           YT +      +  ++ ++ 
Sbjct: 63  YTAEAMTEAVVQGLEPRAM 81

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 184 YRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTW 243
              R ++  F  +   + + + F+ ++  + V          I++ +A            
Sbjct: 25  ETYRYLTDIFTTL---VDLKWRFNLLI-FVMVYTVTWLFFGMIWWLIAYI---------- 70

Query: 244 IGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFD 303
            G +   +        +     ++++   S+ T TT+GYG     +  +    +I +   
Sbjct: 71  RGDMDHIEDPSWT-PCVTNLNGFVSAFLFSIETETTIGYGYRVITD--KCPEGIILLLIQ 127

Query: 304 MILGAYLIGNMTALIVKGSKTEKFRDK 330
            +LG+ +   M   +       K R +
Sbjct: 128 SVLGSIVNAFMVGCMFVKISQPKKRAE 154

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 34/147 (23%)

Query: 173 EAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLAT 232
           + +  +L   L R+ K+    H      R     + ++ ++ +        + +      
Sbjct: 22  KHMPPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIVLL------AGSYLAVLAER 75

Query: 233 TLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLRE 292
             P                             SY  +++ SV T TTVGYGD++ V L  
Sbjct: 76  GAPGAA------------------------LISYPDALWWSVETATTVGYGDLYPVTLWG 111

Query: 293 MVFIMIYVSFDMILGAYLIGNMTALIV 319
                      M+ G    G + A + 
Sbjct: 112 RCV----AVVVMVAGITSYGLVFAAVA 134

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG 680
           L     + +  L K  +   + P + +    T ++   S G
Sbjct: 486 LDYESLQQELAL-KETVWKKVSPESNEDISTTVVYRMESLG 525

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319
            +Y  +++ +  T TTV YGD++ V L   +         M+ G    G +TA + 
Sbjct: 60  ITYPRALWWACETATTVAYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALA 111

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 25/180 (13%), Positives = 50/180 (27%), Gaps = 43/180 (23%)

Query: 174 AVRYLLWIRLYRV--RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLA 231
            +   L  RL ++   +                +   ++             + +     
Sbjct: 9   PMLSGLLARLVKLLLGRHGSALQWRAAGAATVLLVIVLL-----------AGSYLAVLAE 57

Query: 232 TTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLR 291
              P  Q                          +Y  +++ SV T TTVGYGD++ V L 
Sbjct: 58  RGAPGAQ------------------------LITYPRALWWSVETATTVGYGDLYPVTLW 93

Query: 292 EMVFIMIYVSFDMILGAYLIGNMTALIVKG--SKTEKFRDKMTDLMKYINRNRLGRDIRD 349
             +         M+ G    G +TA +      + ++ + +     +        R  R 
Sbjct: 94  GRLV----AVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRA 149

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
           F   +  + + SV T+ TVGYGD+H   +       + +   M   A   G     + + 
Sbjct: 75  FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134

Query: 322 SKTEK-----------FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS 362
            K  +            RD    LM  +   R    +  QI   L    ++ 
Sbjct: 135 KKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTP 186

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 189 VSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLK 248
           ++  F     DIR  YM    +      L    +   IF+ +A             G L+
Sbjct: 32  IADMFTTC-VDIRWRYML---LLFSLAFLVSWLLFGLIFWLIAL----------IHGDLE 77

Query: 249 MGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGA 308
                      +     ++ +   S+ T TT+GYG        E    +  V    I+G 
Sbjct: 78  NPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTE--ECPLAVFMVVVQSIVGC 135

Query: 309 YLIGNMTALIV-KGSKTEKFRDKM 331
            +   M   I+ K ++ +K    +
Sbjct: 136 IIDSFMIGAIMAKMARPKKRAQTL 159

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 12/147 (8%)

Query: 204 YMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFW 263
            + + +   +   L          +      P      + +  L +G   +       F 
Sbjct: 159 ILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFC 218

Query: 264 K----SYITSMYASVVTMTTVGYGDVHAVNLRE------MVFIMIYVSFDMILGAYLIGN 313
                S + ++Y  +VT+TTVG+GD  A              +  ++   +   A ++  
Sbjct: 219 YMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTT 278

Query: 314 MTALIVKGSKTEKFRDKMTDLMKYINR 340
           +   +     + + R +M  L    N 
Sbjct: 279 IGNWLRV--VSRRTRAEMGGLTAQSNS 303

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 18/137 (13%), Positives = 45/137 (32%), Gaps = 10/137 (7%)

Query: 204 YMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSY---ADFREI 260
              + +V+ I V +    +      +  +           +G + +  + +   A F  +
Sbjct: 137 LFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVL 196

Query: 261 GFWKSYITSMYASVVTMTTVGYGDVHAVNLRE-------MVFIMIYVSFDMILGAYLIGN 313
               +++ S Y   ++++T+G GD                + I  Y+   +I    ++  
Sbjct: 197 EDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLET 256

Query: 314 MTALIVKGSKTEKFRDK 330
              L       + F  K
Sbjct: 257 FCELHELKKFRKMFYVK 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	821
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.98
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.79
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.76
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.75
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.74
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.74
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.74
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.74
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.72
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.7
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.67
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.67
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.67
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.67
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.66
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.66
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.66
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.66
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.66
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.65
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.64
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.63
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.63
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.63
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.62
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.62
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.61
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.6
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.6
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.59
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.58
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.56
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.56
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.54
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.54
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.53
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.53
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.53
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.53
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.53
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.52
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.52
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.5
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.5
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.5
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.46
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.45
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.44
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.44
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.43
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.43
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.39
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.35
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.33
3b02_A	195	Transcriptional regulator, CRP family; structural	99.3
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.25
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.21
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.19
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.18
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.17
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.15
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.14
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.08
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.02
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.0
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.87
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.87
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.85
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.81
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	98.81
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.62
1lnq_A	336	MTHK channels, potassium channel related protein;	98.44

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=100.00  E-value=7.7e-40  Score=352.15  Aligned_cols=341  Identities=18%  Similarity=0.179  Sum_probs=137.6

Q ss_pred             EcCCChhHHHHHHHHHHHHHHHhhhcceeeeeecCC---CcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHH
Q 003425           66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL---SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTP  142 (821)
Q Consensus        66 ~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~---~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~  142 (821)
                      ..|+|+...   .+++++++.+++++.+.. +....   ...+..++.++.++|++|+++++..+            +++
T Consensus         3 ~~p~s~~f~---~~~~~~i~ls~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~------------~~~   66 (355)
T 3beh_A            3 VLPFLRIYA---PLNAVLAAPGLLAVAALT-IPDMSGRSRLALAALLAVIWGAYLLQLAATLLKR------------RAG   66 (355)
T ss_dssp             ----CCSSS---SHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CSC
T ss_pred             CCchhHHHH---HHHHHHHHHHHHHHHHHc-ccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccc------------ccc
Confidence            468887543   344444444444433332 11111   11234556666667899999976321            221


Q ss_pred             HHHHHhhh-hhHHHHHhh-hhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHH
Q 003425          143 IALRYLRS-SFIIDLFSC-MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCS  220 (821)
Q Consensus       143 I~~~Ylk~-~f~iDlis~-lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  220 (821)
                        ..|.++ |.++|++++ +|+...+.  .....+|++|++|++|+.|..+.++.+.....  .....+..++..++++.
T Consensus        67 --~~~~~~~~~i~Dl~~i~~p~~~~~~--~~~~~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~~~  140 (355)
T 3beh_A           67 --VVRDRTPKIAIDVLAVLVPLAAFLL--DGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGVVL  140 (355)
T ss_dssp             --SSCCCHHHHHHHHHHHHHHHHHHHS--CCSGGGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHHHH
T ss_pred             --ceeccCcchHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence              345555 779999999 68876542  22334455555555555555444444333222  22345667777788889


Q ss_pred             HHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHH
Q 003425          221 HIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV  300 (821)
Q Consensus       221 h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~  300 (821)
                      |++||++|.++...+                        .+.+.+|.+|+||+++|||||||||++|.|+.|++++++++
T Consensus       141 ~~~a~~~~~~e~~~~------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~  196 (355)
T 3beh_A          141 FAVALAAYVIERDIQ------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVM  196 (355)
T ss_dssp             HHHHHHHHHHHTTTC------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCC------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHH
Confidence            999999999875311                        11245799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCcHHHHHHH
Q 003425          301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKI  380 (821)
Q Consensus       301 i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~~~~~~~l~~lp~~L~~~i  380 (821)
                      ++|++++++++|.+++.+.+.     .++                      +++.                         
T Consensus       197 ~~g~~~~~~~~~~i~~~~~~~-----~~~----------------------~~~~-------------------------  224 (355)
T 3beh_A          197 MSGIGIFGLWAGILATGFYQE-----VRR----------------------GDFV-------------------------  224 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-----HHH----------------------HHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHH----------------------Hhhc-------------------------
Confidence            999999999999998766321     000                      0010                         


Q ss_pred             HHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCC
Q 003425          381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS  460 (821)
Q Consensus       381 ~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~  460 (821)
                         ...+.++++|+|++++++.++.+...++.+.++|||+|+++||.++++|+|.+|.++++..+       ...+++|+
T Consensus       225 ---~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~  294 (355)
T 3beh_A          225 ---RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGA  294 (355)
T ss_dssp             ---HHHC-------------------------------------------------------------------------
T ss_pred             ---ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECCCC
Confidence               02367888999999999999999999999999999999999999999999999999998743       24789999


Q ss_pred             ccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       461 ~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +|||.+++.+.|++++++|.++|+++.+++++|.++++++|++...+++.+.++
T Consensus       295 ~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r  348 (355)
T 3beh_A          295 FFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  348 (355)
T ss_dssp             ------------------------------------------------------
T ss_pred             EEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888766654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.6e-36  Score=315.45  Aligned_cols=212  Identities=23%  Similarity=0.230  Sum_probs=190.1

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGAD---PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      +..+..|.||||.||..|+.+++++|++.|++   ++.+|..|.||||+||..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL   82 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL   82 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            45788999999999999999999999999998   789999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCC-----------------------------------------------CCc--ccccchh
Q 003425          610 LEAIKYGNDGAASLLVKEGAS-----------------------------------------------LNV--EEAGSFL  640 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~-----------------------------------------------~~~--~~~~t~l  640 (821)
                      |+|+..|+.+++++|+++|++                                               ++.  ..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            999999999999999998865                                               222  3588999


Q ss_pred             hHHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 003425          641 CTAVARGDSDLLKRVLSNGIDPNTRDYD-LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK  719 (821)
Q Consensus       641 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~  719 (821)
                      |.|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       163 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          163 HVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999999999864 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccccccccCCCCCCccccccC
Q 003425          720 LLEDAKSTQLLEFPHGFQDTADKRN  744 (821)
Q Consensus       720 ~Ll~~~a~~~~~~~~~~~~~~~~~~  744 (821)
                      +|+++|+++...+..|.+|......
T Consensus       243 ~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          243 LLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHTTCCCCCCC------------
T ss_pred             HHHHcCCCcCcCCCcccccccccCC
Confidence            9999999999999999998765544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.9e-35  Score=308.75  Aligned_cols=211  Identities=25%  Similarity=0.268  Sum_probs=202.1

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE  611 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  611 (821)
                      ....+..|.||||.||..|+.++++.|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~  131 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN  131 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          612 AIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      |+..|+.+++++|+++|++++.. +|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          132 ACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999998754 48999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      +|++++. |..|.||||+|+..|+.+++++|+++|++....+..|.++.....
T Consensus       212 ~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          212 SGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             TTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence            9999995 889999999999999999999999999999999999988876554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.2e-36  Score=305.76  Aligned_cols=209  Identities=23%  Similarity=0.247  Sum_probs=116.9

Q ss_pred             ccchhhhHhhhHHHHhhcC-------------CHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 003425          532 ISKHEAELALKVNSAAYHG-------------DLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVD  597 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g-------------~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  597 (821)
                      ++..|.+|.||||.|+..|             +.++++.|++.|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4455666666777666655             66666666666666643 366666777777766677777777766666


Q ss_pred             CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCC-CCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 003425          598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGA-SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLH  674 (821)
Q Consensus       598 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~-~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh  674 (821)
                      ++.+|..|.||||+|+..|+.+++++|+++++ +++..  +|.||||.|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            66666666677777776666677776666654 44433  3666677777666666777777666666666666667777


Q ss_pred             HHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccc
Q 003425          675 VAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       675 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++..
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence            777666667777777666666666666677777777667777777777766666666666665554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4e-35  Score=297.96  Aligned_cols=215  Identities=25%  Similarity=0.258  Sum_probs=203.8

Q ss_pred             cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      +.+..+..|.||||.||..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   82 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH   82 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHhcC-CCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEG-ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL  687 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~  687 (821)
                      +|+..|+.+++++|+++| .+++..  .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999998 676654  48899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccccCC
Q 003425          688 LVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNP  745 (821)
Q Consensus       688 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~~~  745 (821)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|++....+..|.++.......
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887655443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.5e-35  Score=296.35  Aligned_cols=211  Identities=21%  Similarity=0.242  Sum_probs=196.5

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTP  608 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tp  608 (821)
                      +..|.+|.||||.||..|+.++++.|++    .|.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   82 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   82 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            4678899999999999999999999997    799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHhcCC----CCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCc
Q 003425          609 LLEAIKYGNDGAASLLVKEGA----SLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGL  681 (821)
Q Consensus       609 L~~A~~~~~~~~v~~Ll~~~~----~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~  681 (821)
                      ||+|+..|+.+++++|+++++    +++..  .|.||||.|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+
T Consensus        83 l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~  162 (241)
T 1k1a_A           83 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  162 (241)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCC
Confidence            999999999999999999987    55543  58899999999999999999999999999998 889999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       682 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++...+.
T Consensus       163 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  224 (241)
T 1k1a_A          163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  224 (241)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888765443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=8.9e-35  Score=314.13  Aligned_cols=239  Identities=25%  Similarity=0.299  Sum_probs=215.2

Q ss_pred             hchHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425          502 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS  581 (821)
Q Consensus       502 ~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~  581 (821)
                      +.....+..+....+.+.....+.. ....++..+..|.||||.||..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus        22 ~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           22 EYKKDELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACS  100 (351)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cccchhHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence            3445556666666666544444443 344566778899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc----------------------------
Q 003425          582 RGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV----------------------------  633 (821)
Q Consensus       582 ~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~----------------------------  633 (821)
                      .|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.                            
T Consensus       101 ~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~  180 (351)
T 3utm_A          101 YGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH  180 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhccc
Confidence            9999999999999999999999999999999999999999999999998764                            


Q ss_pred             ----------------------------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425          634 ----------------------------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY  682 (821)
Q Consensus       634 ----------------------------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~  682 (821)
                                                  ..+.||||.|+..   ++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  260 (351)
T 3utm_A          181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHN  260 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCH
Confidence                                        2367999999999   558999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425          683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD  741 (821)
Q Consensus       683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~  741 (821)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...+..|.++...
T Consensus       261 ~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~  319 (351)
T 3utm_A          261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM  319 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhh
Confidence            99999999999999999999999999999999999999999999999999888876553

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-35  Score=302.77  Aligned_cols=210  Identities=23%  Similarity=0.245  Sum_probs=169.5

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCC--------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCC
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGAD--------PNRTDYDGRSPLHLAASRGYE-EIMTFLIQKGVDINLKDNF  604 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--------~n~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~  604 (821)
                      ++|..+.++|+.||..|+.++|+.|++.|++        ++..+..|.||||.|+..++. .++++|++.|+++|.+|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            4566788999999999999999999998875        456678899999999988775 5889999999999999999


Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425          605 GNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY  682 (821)
Q Consensus       605 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~  682 (821)
                      |.||||+|+..|+.+++++|++.|++++..  +|.||++.|+..++.+++++|+++|+++|.+|..|.||||+||..|+.
T Consensus        86 G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~  165 (269)
T 4b93_B           86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHH  165 (269)
T ss_dssp             SCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCG
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            999999999999999999999999998875  488999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      +++++|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.+|...+.
T Consensus       166 ~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  226 (269)
T 4b93_B          166 ELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE  226 (269)
T ss_dssp             GGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSC
T ss_pred             HHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998877554

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.6e-35  Score=295.15  Aligned_cols=219  Identities=27%  Similarity=0.358  Sum_probs=186.4

Q ss_pred             HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425          508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI  587 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~  587 (821)
                      +..+...++.+.....+..... ..+..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus        10 l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   88 (231)
T 3aji_A           10 ICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEI   88 (231)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHH
Confidence            3444444444433344433322 245567788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425          588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTR  665 (821)
Q Consensus       588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  665 (821)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||.|+..|+.+++++|+++|++++.+
T Consensus        89 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  168 (231)
T 3aji_A           89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ  168 (231)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Confidence            999999999999999999999999999999999999999998887654  789999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      |..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|+++|++
T Consensus       169 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            99999999999999999999999999999999999999999999999999999999988875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6e-34  Score=286.39  Aligned_cols=196  Identities=27%  Similarity=0.327  Sum_probs=188.9

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA  612 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A  612 (821)
                      ..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++++ +++..+..|.||||+|
T Consensus        20 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A   99 (223)
T 2f8y_A           20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA   99 (223)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH
T ss_pred             ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH
Confidence            347789999999999999999999999999999999999999999999999999999999987 8999999999999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          613 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      +..|+.+++++|+++|++++..+  |.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       100 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999988764  8899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      +|++++.+|..|.||+++|+..|+.+++++|+++|+...
T Consensus       180 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          180 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS  218 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred             cCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence            999999999999999999999999999999999998754

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.3e-34  Score=287.85  Aligned_cols=206  Identities=26%  Similarity=0.284  Sum_probs=192.4

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHH
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKG--VDINL-KDNFGNTPLLEAIK  614 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~tpL~~A~~  614 (821)
                      |.||||.||..|+.++++.|++.|.+++ ..|..|.||||+|+..|+.+++++|+++|  ++++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            6799999999999999999999998865 48999999999999999999999999999  55555 78899999999999


Q ss_pred             cCChHHHHHHHhcC--CCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          615 YGNDGAASLLVKEG--ASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       615 ~~~~~~v~~Ll~~~--~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      .|+.+++++|+++|  ++++..  .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  776654  48899999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hccccccccCCCCCCccccccC
Q 003425          691 AG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLE-DAKSTQLLEFPHGFQDTADKRN  744 (821)
Q Consensus       691 ~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll-~~~a~~~~~~~~~~~~~~~~~~  744 (821)
                      +| ++++.+|..|+||||+|+..|+.+++++|+ ++|+++...+..|.++......
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            99 999999999999999999999999999999 9999999999999988776543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.8e-34  Score=293.66  Aligned_cols=194  Identities=27%  Similarity=0.326  Sum_probs=184.4

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA  612 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A  612 (821)
                      ..+..|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|+ +++.++..|.||||+|
T Consensus        52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A  131 (253)
T 1yyh_A           52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA  131 (253)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999987 8999999999999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          613 IKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      +..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999998764  8999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       691 ~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      +|++++.+|..|+||+|+|+..|+.+++++|......
T Consensus       212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999876543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.9e-34  Score=286.45  Aligned_cols=205  Identities=30%  Similarity=0.341  Sum_probs=194.6

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG  616 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~  616 (821)
                      .+.+|||.||..|+.+.++.|++.+.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   84 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG   84 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcC
Confidence            467899999999999999999988654 6788999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425          617 NDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS  694 (821)
Q Consensus       617 ~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~  694 (821)
                      +.+++++|+++|++++..+  |.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++
T Consensus        85 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  164 (231)
T 3aji_A           85 XDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS  164 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9999999999999988754  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       695 ~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++....
T Consensus       165 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  212 (231)
T 3aji_A          165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA  212 (231)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHS
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            999999999999999999999999999999999999888888876543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.2e-33  Score=292.31  Aligned_cols=237  Identities=26%  Similarity=0.310  Sum_probs=207.7

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ...+..+...+..+.....++.+.+.+. ..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence            3456666666666666666665544332 226678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc------------cccchhhHHHhcCCHHHH
Q 003425          585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARGDSDLL  652 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~t~l~~A~~~~~~~~v  652 (821)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..            .|.||||.|+..|+.+++
T Consensus        85 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  164 (285)
T 1wdy_A           85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999999999988743            477999999999999999


Q ss_pred             HHHHHC-CCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-ccc
Q 003425          653 KRVLSN-GIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED-AKS  726 (821)
Q Consensus       653 ~~Ll~~-g~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~-~~a  726 (821)
                      ++|++. |++++..|..|.||||+|+..++    .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+
T Consensus       165 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~  244 (285)
T 1wdy_A          165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  244 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSC
T ss_pred             HHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCC
Confidence            999987 99999999999999999999998    899999999999999999999999999999999999999999 899


Q ss_pred             cccccCCCCCCccccc
Q 003425          727 TQLLEFPHGFQDTADK  742 (821)
Q Consensus       727 ~~~~~~~~~~~~~~~~  742 (821)
                      +++..+..|.++....
T Consensus       245 ~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          245 EINDTDSDGKTALLLA  260 (285)
T ss_dssp             CTTCCCTTSCCHHHHH
T ss_pred             CccccCCCCCcHHHHH
Confidence            9888888887776543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.7e-35  Score=297.20  Aligned_cols=205  Identities=23%  Similarity=0.195  Sum_probs=185.3

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGA----DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~----~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      ..|.+|.||||.|+..|+.++++.|++.+.    ++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   82 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            457789999999999999999999998765    7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCC------C--cccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcC
Q 003425          610 LEAIKYGNDGAASLLVKEGASL------N--VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEG  680 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~------~--~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g  680 (821)
                      |+|+..|+.+++++|+++|+++      +  ...|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  162 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ  162 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999998753      2  23589999999999999999999999999999997 9999999999999


Q ss_pred             cHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc--ccCCCCCCc
Q 003425          681 LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL--LEFPHGFQD  738 (821)
Q Consensus       681 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~--~~~~~~~~~  738 (821)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++.  ..+..+.++
T Consensus       163 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  222 (236)
T 1ikn_D          163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES  222 (236)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred             CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence            9999999999999999999999999999999999999999999999887  444444443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=297.19  Aligned_cols=220  Identities=21%  Similarity=0.268  Sum_probs=161.9

Q ss_pred             HHHHhcCCcchhhhhhhccccc------ccccchhhhHhhhHHHHhhcCCHH-HHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          508 LTNLLQGKESDLRLKQLQSDIT------FHISKHEAELALKVNSAAYHGDLY-QLEGLIRAGADPNRTDYDGRSPLHLAA  580 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~L~~A~~~g~~~-~v~~Ll~~g~~~n~~d~~g~t~L~~A~  580 (821)
                      |..+...++.+.....++....      ..++..+..+.||||.|+..++.+ +++.|++.|+|+|.+|.+|+||||+||
T Consensus        15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~   94 (269)
T 4b93_B           15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA   94 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            3344444554444444443321      234566788999999999988764 789999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC
Q 003425          581 SRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN  658 (821)
Q Consensus       581 ~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~  658 (821)
                      ..|+.+++++|++.|++++..+..|.||+|.|+..++.+++++|+++|++++..  .|.||||+|+..|+.+++++|+++
T Consensus        95 ~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  174 (269)
T 4b93_B           95 LHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQH  174 (269)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHT
T ss_pred             HcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            999999999999999999999999999999999999999999999999999876  488999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHhcccc
Q 003425          659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN-KNLIKLLEDAKST  727 (821)
Q Consensus       659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-~~i~~~Ll~~~a~  727 (821)
                      |+++|.+|..|.||||+||..|+.++|++|+++|+|++.+|.+|+||||+|+.+++ .++++.|...++.
T Consensus       175 gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~  244 (269)
T 4b93_B          175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS  244 (269)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred             CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence            99999999999999999999999999999999999999999999999999998775 3444444444443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.4e-34  Score=291.88  Aligned_cols=224  Identities=21%  Similarity=0.232  Sum_probs=196.4

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcc--cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQS--DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA  580 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~  580 (821)
                      .+...+..+...+..+.....++.  .....++..+..|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+
T Consensus         8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~   87 (241)
T 1k1a_A            8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   87 (241)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            344556666666555444333331  123345667788999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc---ccchhhHHHhcCCHHHHH
Q 003425          581 SRGYEEIMTFLIQKGV----DINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLK  653 (821)
Q Consensus       581 ~~g~~~~v~~Ll~~g~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~t~l~~A~~~~~~~~v~  653 (821)
                      ..|+.+++++|+++++    +++..+..|.||||+|+..|+.+++++|+++|++++..+   |.||||.|+..|+.++++
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~  167 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  167 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999987    899999999999999999999999999999999998754   889999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425          654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS  726 (821)
Q Consensus       654 ~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a  726 (821)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.++++.|.+.++
T Consensus       168 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.3e-33  Score=275.17  Aligned_cols=189  Identities=26%  Similarity=0.313  Sum_probs=179.6

Q ss_pred             hhHhhhHHHHhhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          537 AELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       537 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~  615 (821)
                      ..+.||||.||..|+.+.++.|++.+. ++|..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            346799999999999999999999876 9999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHH-hcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCc-----HHHHH
Q 003425          616 GNDGAASLLV-KEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGL-----YLMAK  686 (821)
Q Consensus       616 ~~~~~v~~Ll-~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~-----~~~v~  686 (821)
                      |+.+++++|+ ..+++++..  .|.||||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..++     .++++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~  162 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK  162 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence            9999999999 556677664  4889999999999999999999999 9999999999999999999998     99999


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425          687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK  725 (821)
Q Consensus       687 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~  725 (821)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999999999999999999999999999999999999886

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=4.4e-34  Score=298.30  Aligned_cols=198  Identities=21%  Similarity=0.149  Sum_probs=186.8

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLE  611 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~  611 (821)
                      ++..|..|.||||+||..|+.+++++|++.|+++|..|  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            56778899999999999999999999999999999884  8999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHhcCCCCCccc--c-cchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          612 AIKYGNDGAASLLVKEGASLNVEE--A-GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~~--~-~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      |+..|+.+++++|+++|++++..+  | .||||.|+..|+.+++++|+++|++.... ..|.||||+|+..|+.+++++|
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence            999999999999999999998765  5 79999999999999999999999887433 2799999999999999999999


Q ss_pred             HHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhccccccccC
Q 003425          689 VEAGASVFPKDRWGNTP-LDEGRMCGNKNLIKLLEDAKSTQLLEF  732 (821)
Q Consensus       689 l~~ga~~~~~d~~g~t~-l~~A~~~~~~~i~~~Ll~~~a~~~~~~  732 (821)
                      +++|++++.+|..|+|| ||+|+..|+.+++++|+++|++++..+
T Consensus       181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            99999999999999998 999999999999999999999987765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.5e-33  Score=288.70  Aligned_cols=226  Identities=24%  Similarity=0.251  Sum_probs=207.5

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ...++.+...+..+.....++++.+  ++..+..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus        40 ~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  117 (285)
T 1wdy_A           40 WTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence            4567777777766666666665544  44567789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCChHHHHHHHhc-CCCCCcc--cccchhhHHHhcCC---
Q 003425          585 EEIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGAASLLVKE-GASLNVE--EAGSFLCTAVARGD---  648 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~~--~~~t~l~~A~~~~~---  648 (821)
                      .+++++|+++|++++..          +..|.||||+|+..|+.+++++|++. |++++..  .|.||||.|+..++   
T Consensus       118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  197 (285)
T 1wdy_A          118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  197 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT
T ss_pred             HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch
Confidence            99999999999999987          78899999999999999999999997 9988875  48899999999999   


Q ss_pred             -HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425          649 -SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS  726 (821)
Q Consensus       649 -~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a  726 (821)
                       .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  277 (285)
T ss_dssp             HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Confidence             999999999999999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             cccccC
Q 003425          727 TQLLEF  732 (821)
Q Consensus       727 ~~~~~~  732 (821)
                      ++...+
T Consensus       278 ~~~~~d  283 (285)
T 1wdy_A          278 STDCGD  283 (285)
T ss_dssp             CSCCSS
T ss_pred             CCCccc
Confidence            987664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.9e-33  Score=296.50  Aligned_cols=209  Identities=28%  Similarity=0.305  Sum_probs=192.8

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      ..+..+.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC-CCCC--------------------------CC
Q 003425          614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN-GIDP--------------------------NT  664 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~-g~~~--------------------------~~  664 (821)
                      ..|+.+++++|+++|++++..  +|.||||.|+..++.++++.++.. |.++                          ..
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            999999999999999998875  488999999999999999887753 4333                          34


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       665 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...+..|.++.+..
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A  272 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999998888876544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-33  Score=304.57  Aligned_cols=223  Identities=18%  Similarity=0.140  Sum_probs=128.2

Q ss_pred             hHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG  583 (821)
Q Consensus       504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g  583 (821)
                      +...+..+......+.....++++.+  ++..+..|.||||+||..|+.+++++|++.|++++.  .+|.||||+|+..|
T Consensus        20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g   95 (364)
T 3ljn_A           20 NMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMAN   95 (364)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcC
Confidence            33444444444444444444443322  233444555555555555555555555555554332  24555555555555


Q ss_pred             CHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHHcC--ChHHHHHHHhcCCCCCccc--ccc
Q 003425          584 YEEIMTFLIQK----GVDINL-----------------KDNFGNTPLLEAIKYG--NDGAASLLVKEGASLNVEE--AGS  638 (821)
Q Consensus       584 ~~~~v~~Ll~~----g~~~~~-----------------~~~~g~tpL~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~t  638 (821)
                      +.+++++|+++    |++++.                 .|..|.||||+|+..|  +.+++++|+++|++++..+  |.|
T Consensus        96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t  175 (364)
T 3ljn_A           96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET  175 (364)
T ss_dssp             CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCC
Confidence            55555555555    444444                 5556666666666666  6666666666666655543  556


Q ss_pred             hhhHHHhcCCHHHHHHHHHCCCC-----CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425          639 FLCTAVARGDSDLLKRVLSNGID-----PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       639 ~l~~A~~~~~~~~v~~Ll~~g~~-----~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  713 (821)
                      |||+|+..|+.+++++|+++|++     +|..|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|
T Consensus       176 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          176 PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence            66666666666666666666665     6666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHhccccccc
Q 003425          714 NKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       714 ~~~i~~~Ll~~~a~~~~  730 (821)
                      +.+++++|+++|++...
T Consensus       256 ~~~~v~~Ll~~~~~~~~  272 (364)
T 3ljn_A          256 MVLLTKELLQKTDVFLI  272 (364)
T ss_dssp             CHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHHHcCCchhh
Confidence            66666666666665543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=4.7e-34  Score=293.72  Aligned_cols=193  Identities=20%  Similarity=0.119  Sum_probs=180.2

Q ss_pred             HhhhHHHHhhcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC------
Q 003425          539 LALKVNSAAYHGDLY----QLEGLIRAGADPNR----TDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLK------  601 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~----~v~~Ll~~g~~~n~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~------  601 (821)
                      |.||||.||..|+.+    ++++|++.|+++|.    .|..|.||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            689999999999997    66777779999998    899999999999999   9999999999999887643      


Q ss_pred             -----CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc---------------ccchhhHHHhcCCHHHHHHHHH---C
Q 003425          602 -----DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE---------------AGSFLCTAVARGDSDLLKRVLS---N  658 (821)
Q Consensus       602 -----~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------~~t~l~~A~~~~~~~~v~~Ll~---~  658 (821)
                           |..|.||||+|+..|+.+++++|+++|++++..+               |.||||.|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 3779999999999999999999999999998764               8899999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          659 GIDPNTRDYDLRTPLHVAAS--EGLYL-------MAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       659 g~~~~~~d~~g~T~Lh~A~~--~g~~~-------~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                      |+++|.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999  78888       999999999999       999999999999999999999999999


Q ss_pred             hcccccccc
Q 003425          723 DAKSTQLLE  731 (821)
Q Consensus       723 ~~~a~~~~~  731 (821)
                      ++|++....
T Consensus       242 ~~g~~~~~~  250 (256)
T 2etb_A          242 QREFSGAAA  250 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             hCCCCCCCc
Confidence            999886543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=9.2e-33  Score=262.56  Aligned_cols=159  Identities=43%  Similarity=0.606  Sum_probs=134.7

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      .++|+.||..|+.++|+.|++.|+|+|.+|.+|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999988877776


Q ss_pred             HHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 003425          620 AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD  699 (821)
Q Consensus       620 ~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d  699 (821)
                      ++++|++                               +|+++|.+|.+|+||||+||..|+.+++++|+++|+|++.+|
T Consensus        85 ~v~~Ll~-------------------------------~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  133 (169)
T 4gpm_A           85 VVKLLIS-------------------------------KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD  133 (169)
T ss_dssp             HHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHH-------------------------------CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            6666655                               455667778888888888888888888888888888888888


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       700 ~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      ..|+||||+|+..|+.+++++|+++||+..
T Consensus       134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          134 SDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            888888888888888888888888888754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-33  Score=304.44  Aligned_cols=227  Identities=21%  Similarity=0.266  Sum_probs=196.5

Q ss_pred             hchHHHHHHHhcCCcchhhhhhhcc------cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 003425          502 CDGRKVLTNLLQGKESDLRLKQLQS------DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP  575 (821)
Q Consensus       502 ~~~~~~l~~~l~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~  575 (821)
                      ..+...++.+......+.....+.+      ....+++..|..|.||||.||..|+.+++++|++.|++++..|..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            3455666666665554332222210      1223456678889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcC---ChHHHHHHHhcCCCCCc----------ccccch
Q 003425          576 LHLAASRGYEEIMTFLIQKG---VDINLKDNFGNTPLLEAIKYG---NDGAASLLVKEGASLNV----------EEAGSF  639 (821)
Q Consensus       576 L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~tpL~~A~~~~---~~~~v~~Ll~~~~~~~~----------~~~~t~  639 (821)
                      ||+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|+++|++++.          ..|.||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            99999999999999999987   899999999999999999998   89999999999999875          257899


Q ss_pred             hhHHHhcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 003425          640 LCTAVARGDSDLLKRVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       640 l~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                      ||.|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999875 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccc
Q 003425          719 KLLEDAKSTQ  728 (821)
Q Consensus       719 ~~Ll~~~a~~  728 (821)
                      ++|++++++.
T Consensus       363 ~~Ll~~~a~~  372 (373)
T 2fo1_E          363 DIFDRCRPER  372 (373)
T ss_dssp             HHHHTTC---
T ss_pred             HHHHhcCccc
Confidence            9999998763

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-32  Score=306.53  Aligned_cols=233  Identities=23%  Similarity=0.273  Sum_probs=209.8

Q ss_pred             HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425          508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI  587 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~  587 (821)
                      +..+......+.....++++.  +.+..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++
T Consensus       150 L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  227 (437)
T 1n11_A          150 LHVAAKYGKVRVAELLLERDA--HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV  227 (437)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC--CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            444444444444444444433  344566788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425          588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTR  665 (821)
Q Consensus       588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  665 (821)
                      +++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..  .|.||||.|+..|+.+++++|+++|++++.+
T Consensus       228 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  307 (437)
T 1n11_A          228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT  307 (437)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCC
Confidence            99999999999999999999999999999999999999999988765  4889999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      |..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++....
T Consensus       308 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             CSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998877643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=287.75  Aligned_cols=219  Identities=20%  Similarity=0.241  Sum_probs=191.8

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ...+..+......+.....++.+.  .++..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~  137 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGW--AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS  137 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTC--CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCC--CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCH
Confidence            344555555555554555555443  355677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCC
Q 003425          585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDP  662 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  662 (821)
                      .+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..  .|.||||.|+..|+.+++++|+++|+++
T Consensus       138 ~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  216 (285)
T 3d9h_A          138 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV  216 (285)
T ss_dssp             HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC
Confidence            999999999999998654 5999999999999999999999999998875  4889999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc-ccccc
Q 003425          663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA-KSTQL  729 (821)
Q Consensus       663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~-~a~~~  729 (821)
                      +. |..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+  ++.+++++|+++ |++..
T Consensus       217 ~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          217 NQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            95 889999999999999999999999999999999999999999999  567999999998 66543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.6e-33  Score=292.69  Aligned_cols=205  Identities=20%  Similarity=0.164  Sum_probs=175.8

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHH----cCCCCC----CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCC--
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIR----AGADPN----RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDI--  598 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n----~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~--  598 (821)
                      .+..+..|.||||.||..|+.++|+.|++    .+++++    ..|..|+||||+|+..   |+.+++++|+++|+++  
T Consensus         6 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~   85 (273)
T 2pnn_A            6 EKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS   85 (273)
T ss_dssp             -----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC
T ss_pred             CCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc
Confidence            34567889999999999999999998887    566666    4588999999999987   9999999999998653  


Q ss_pred             -----C----CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc----------------ccchhhHHHhcCCHHHHH
Q 003425          599 -----N----LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLK  653 (821)
Q Consensus       599 -----~----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~t~l~~A~~~~~~~~v~  653 (821)
                           +    ..|..|.||||+|+..|+.+++++|+++|++++..+                |.||||+|+..|+.++++
T Consensus        86 ~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           86 LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                 2    256789999999999999999999999999998754                889999999999999999


Q ss_pred             HHHH---CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCCC-------CCCCCCCCHHHHHHHcCC
Q 003425          654 RVLS---NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASVF-------PKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       654 ~Ll~---~g~~~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~~-------~~d~~g~t~l~~A~~~~~  714 (821)
                      +|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+
T Consensus       166 ~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9999   999999999999999999999998         899999999999997       489999999999999999


Q ss_pred             HHHHHHHHhccc-cccccCCCCC
Q 003425          715 KNLIKLLEDAKS-TQLLEFPHGF  736 (821)
Q Consensus       715 ~~i~~~Ll~~~a-~~~~~~~~~~  736 (821)
                      .+++++|+++|+ ++....+.++
T Consensus       246 ~~iv~~Ll~~ga~dp~~~~~~~~  268 (273)
T 2pnn_A          246 IGVLAYILQREIHEPECRHAAAH  268 (273)
T ss_dssp             HHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHCCCCCchhhhhhhh
Confidence            999999999999 6665554443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-32  Score=278.41  Aligned_cols=217  Identities=26%  Similarity=0.352  Sum_probs=195.3

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ...+..+...+..+.....++++.+  ++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   89 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH   89 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            3445555555555555555555443  45567789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCC
Q 003425          585 EEIMTFLIQKG-VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGID  661 (821)
Q Consensus       585 ~~~v~~Ll~~g-~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~  661 (821)
                      .+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..  .|.||||.|+..|+.+++++|+++|++
T Consensus        90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  169 (237)
T 3b7b_A           90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD  169 (237)
T ss_dssp             HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999998 899999999999999999999999999999999998875  488999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425          662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED  723 (821)
Q Consensus       662 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~  723 (821)
                      ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+.+|+.+.+..|++
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999876655554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3e-32  Score=303.72  Aligned_cols=237  Identities=22%  Similarity=0.208  Sum_probs=183.5

Q ss_pred             hHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG  583 (821)
Q Consensus       504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g  583 (821)
                      +...+..+...+..+.....++++.+  ++..+..|.||||.||..|+.+++++|++.|+++|.+|..|.||||+|+..|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC
Confidence            44556666666666655566655443  3445666778888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCC
Q 003425          584 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGID  661 (821)
Q Consensus       584 ~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~  661 (821)
                      +.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+..  .|.||||.|+..|+.+++++|+++|++
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  171 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  171 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            888888888888888888888888888888888888888888887776543  467888888888888888888888888


Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425          662 PNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD  741 (821)
Q Consensus       662 ~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~  741 (821)
                      ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++.+..+..|.++...
T Consensus       172 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  251 (437)
T 1n11_A          172 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  251 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888877777777777664


Q ss_pred             c
Q 003425          742 K  742 (821)
Q Consensus       742 ~  742 (821)
                      .
T Consensus       252 A  252 (437)
T 1n11_A          252 A  252 (437)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-32  Score=299.13  Aligned_cols=213  Identities=20%  Similarity=0.186  Sum_probs=195.5

Q ss_pred             ccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 003425          528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT  607 (821)
Q Consensus       528 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  607 (821)
                      ..+..+..|..|.||||.||..|+.++|++|++.|+++|..|..|.||||+||..|+.+++++|+++|++++.  ..|.|
T Consensus         9 ~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t   86 (364)
T 3ljn_A            9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQK   86 (364)
T ss_dssp             -------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBC
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCC
Confidence            3456677899999999999999999999999999999999999999999999999999999999999996664  47899


Q ss_pred             HHHHHHHcCChHHHHHHHhc----CCCCCc-----------------c--cccchhhHHHhcC--CHHHHHHHHHCCCCC
Q 003425          608 PLLEAIKYGNDGAASLLVKE----GASLNV-----------------E--EAGSFLCTAVARG--DSDLLKRVLSNGIDP  662 (821)
Q Consensus       608 pL~~A~~~~~~~~v~~Ll~~----~~~~~~-----------------~--~~~t~l~~A~~~~--~~~~v~~Ll~~g~~~  662 (821)
                      |||+|+..|+.+++++|+++    |++++.                 .  .|.||||+|+..|  +.+++++|+++|+++
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            99999999999999999998    777654                 3  4889999999999  999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425          663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-----VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ  737 (821)
Q Consensus       663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~  737 (821)
                      +..|..|.||||+|+..|+.+++++|+++|++     ++..|..|+||||+|+..|+.+++++|+++|++++..+..|.+
T Consensus       167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t  246 (364)
T 3ljn_A          167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV  246 (364)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCC
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            99999999999999999999999999999999     9999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q 003425          738 DTADK  742 (821)
Q Consensus       738 ~~~~~  742 (821)
                      +....
T Consensus       247 pL~~A  251 (364)
T 3ljn_A          247 PLYLS  251 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87633

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5e-33  Score=302.29  Aligned_cols=211  Identities=19%  Similarity=0.195  Sum_probs=195.2

Q ss_pred             ccchh-hhHhhhHHHHhhcCCHHHHHHHH--------HcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 003425          532 ISKHE-AELALKVNSAAYHGDLYQLEGLI--------RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD  602 (821)
Q Consensus       532 ~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll--------~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  602 (821)
                      ++..+ ..|.||||+||..|+.++++.|+        +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       117 ~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~  196 (373)
T 2fo1_E          117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  196 (373)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccC
Confidence            44455 68999999999999998888776        7899999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhcC---CCCCc--ccccchhhHHHhcC---CHHHHHHHHHCCCCCCC--------CC
Q 003425          603 NFGNTPLLEAIKYGNDGAASLLVKEG---ASLNV--EEAGSFLCTAVARG---DSDLLKRVLSNGIDPNT--------RD  666 (821)
Q Consensus       603 ~~g~tpL~~A~~~~~~~~v~~Ll~~~---~~~~~--~~~~t~l~~A~~~~---~~~~v~~Ll~~g~~~~~--------~d  666 (821)
                      ..|.||||+|+..|+.+++++|++++   ++++.  .+|.||||+|+..+   +.+++++|+++|++++.        .|
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d  276 (373)
T 2fo1_E          197 KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK  276 (373)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSS
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCccc
Confidence            99999999999999999999999987   66665  45899999999998   89999999999999986        67


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          667 YDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       667 ~~g~T~Lh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      ..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+++|++.+..+..|.++...+
T Consensus       277 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A  353 (373)
T 2fo1_E          277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA  353 (373)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred             ccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence            78999999999999999999999886 99999999999999999999999999999999999999998888876544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-32  Score=287.85  Aligned_cols=211  Identities=24%  Similarity=0.228  Sum_probs=176.0

Q ss_pred             hHHHHHHHhcCCcchhhhhhhccccccc-ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          504 GRKVLTNLLQGKESDLRLKQLQSDITFH-ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR  582 (821)
Q Consensus       504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~  582 (821)
                      +...++.+......+.....++.+.+.. ++..+..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~   88 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV   88 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            3445666666666555555555444322 566788899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCC-----------------------------------------------CCCCCCCCCcHHHHHHHc
Q 003425          583 GYEEIMTFLIQKGVD-----------------------------------------------INLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       583 g~~~~v~~Ll~~g~~-----------------------------------------------~~~~~~~g~tpL~~A~~~  615 (821)
                      |+.+++++|+++|++                                               ++.++..|.||||+|+..
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  168 (282)
T 1oy3_D           89 RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH  168 (282)
T ss_dssp             TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHT
T ss_pred             CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHc
Confidence            999999999998765                                               677888999999999999


Q ss_pred             CChHHHHHHHhcCCCCCccc---ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          616 GNDGAASLLVKEGASLNVEE---AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       616 ~~~~~v~~Ll~~~~~~~~~~---~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      |+.+++++|+++|++++..+   |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       169 g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          169 KDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG  248 (282)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC
Confidence            99999999999999998764   889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCC
Q 003425          693 ASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       693 a~~~~~d~~g~t~l~~A~~~~~  714 (821)
                      ++++.+|..|.||+++|.....
T Consensus       249 a~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          249 APEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCCCCCC---------------
T ss_pred             CCcCcCCCcccccccccCCccc
Confidence            9999999999999999987664

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7e-32  Score=274.41  Aligned_cols=193  Identities=24%  Similarity=0.280  Sum_probs=97.1

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .+..|.||||.|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  117 (240)
T 3eu9_A           38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA  117 (240)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            33445555555555555555555555555444332 22555555555555555555555555555555555555555555


Q ss_pred             HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCC-HHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHH
Q 003425          614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGD-SDLLKRVLSNGIDPNTRDY-DLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~-~~~v~~Ll~~g~~~~~~d~-~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      ..|+.+++++|+++|++++..  .|.||||.|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+
T Consensus       118 ~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  197 (240)
T 3eu9_A          118 QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL  197 (240)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH
Confidence            555555555555555444432  24455555553333 4455555555555555443 4555555555555555555555


Q ss_pred             HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          690 EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       690 ~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      ++|++++.+|..|.||+++|+..|+.+++++|++++++
T Consensus       198 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            55555555555555555555555555555555555444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.6e-32  Score=275.13  Aligned_cols=212  Identities=24%  Similarity=0.249  Sum_probs=198.7

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLL  610 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~  610 (821)
                      ++..|..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45667889999999999999999999999999999999999999999999999999999999999988665 44999999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCc-HHHHHH
Q 003425          611 EAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL-YLMAKL  687 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~-~~~v~~  687 (821)
                      +|+..|+.+++++|+++|++++..  .|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~  161 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL  161 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHH
Confidence            999999999999999999998875  47899999999999999999999999999999999999999997776 899999


Q ss_pred             HHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          688 LVEAGASVFPKDR-WGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       688 Ll~~ga~~~~~d~-~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      |++.|++++..+. .|.||||+|+..|+.+++++|+++|+++...+..|.++...+.
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  218 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK  218 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHH
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9999999999997 9999999999999999999999999999999999998876443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.98  E-value=5.1e-32  Score=273.23  Aligned_cols=214  Identities=22%  Similarity=0.166  Sum_probs=187.7

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHHcC
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG--ADPNR-TDYDGRSPLHLAASRG  583 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g--~~~n~-~d~~g~t~L~~A~~~g  583 (821)
                      .+..+......+.....++.+... ....+..|.||||.|+..|+.+++++|++.|  ++++. .+..|.||||+|+..|
T Consensus         5 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~   83 (228)
T 2dzn_A            5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   83 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence            345555555555444455444332 2346788999999999999999999999999  55555 7899999999999999


Q ss_pred             CHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC
Q 003425          584 YEEIMTFLIQKG--VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG  659 (821)
Q Consensus       584 ~~~~v~~Ll~~g--~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g  659 (821)
                      +.+++++|+++|  ++++..+..|.||||+|+..|+.+++++|+++|++++..  .|.||||+|+..|+.+++++|+++|
T Consensus        84 ~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A           84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999998  899999999999999999999999999999999999876  4889999999999999999999999


Q ss_pred             -CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          660 -IDPNTRDYDLRTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       660 -~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                       ++++.+|..|+||||+|+..|+.+++++|+ ++|+|++.+|..|+||+|+|+..   +++++|+++
T Consensus       164 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence             999999999999999999999999999999 89999999999999999999765   566777653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.98  E-value=2.6e-31  Score=285.20  Aligned_cols=224  Identities=24%  Similarity=0.286  Sum_probs=182.0

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchh-hhHhhhHHHHhhcCCHHHHHHHHHcCCCCC-----------------
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHE-AELALKVNSAAYHGDLYQLEGLIRAGADPN-----------------  566 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n-----------------  566 (821)
                      ...|..+....+.+....+++++.+.+  ..+ ..|.||||+||..|+.++|++|+++|++++                 
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            455667777777777777777665443  333 347899999999999999999999887654                 


Q ss_pred             ----------------CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHHcCChHH
Q 003425          567 ----------------RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK----------DNFGNTPLLEAIKYGNDGA  620 (821)
Q Consensus       567 ----------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~g~tpL~~A~~~~~~~~  620 (821)
                                      ..|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~  183 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  183 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence                            45667888999999999999999999988887654          3458899999999999999


Q ss_pred             HHHHHh-cCCCCCccc--ccchhhHHHhcCC----HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc-C
Q 003425          621 ASLLVK-EGASLNVEE--AGSFLCTAVARGD----SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-G  692 (821)
Q Consensus       621 v~~Ll~-~~~~~~~~~--~~t~l~~A~~~~~----~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g  692 (821)
                      +++|++ .|++++..+  |.++++.++..+.    ..++++|+++|+++|.+|..|+||||+|+..|+.++++.|++. |
T Consensus       184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~  263 (337)
T 4g8k_A          184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  263 (337)
T ss_dssp             HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred             HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence            999885 588887654  7788887766544    3578888899999999999999999999999999999999885 7


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425          693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~  730 (821)
                      ++++.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            89999999999999999999999999999999988754

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=2.4e-32  Score=285.09  Aligned_cols=219  Identities=16%  Similarity=0.175  Sum_probs=198.9

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR  582 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~  582 (821)
                      .+...+..+......+.....++++.+.+..    +|.||||.||..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        30 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~  105 (285)
T 3kea_A           30 HGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS  105 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence            3456677777777777666777766554433    489999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHcCChHHHHHHHhcCCCCCcc-cccchhhHHHhcCCHHHHHHHHHCCC
Q 003425          583 GYEEIMTFLIQKGVDINLKDNFG-NTPLLEAIKYGNDGAASLLVKEGASLNVE-EAGSFLCTAVARGDSDLLKRVLSNGI  660 (821)
Q Consensus       583 g~~~~v~~Ll~~g~~~~~~~~~g-~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~t~l~~A~~~~~~~~v~~Ll~~g~  660 (821)
                      |+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|++.... .|.||||.|+..|+.+++++|+++|+
T Consensus       106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  185 (285)
T 3kea_A          106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMT  185 (285)
T ss_dssp             TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCC
Confidence            99999999999999999999999 89999999999999999999999988665 79999999999999999999999999


Q ss_pred             CCCCCCCCCCcH-HHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425          661 DPNTRDYDLRTP-LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF  732 (821)
Q Consensus       661 ~~~~~d~~g~T~-Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~  732 (821)
                      +++.+|..|.|| ||+|+..|+.+++++|+++|++++.+|.       .|+..|+.+++++|+++|++.....
T Consensus       186 d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred             CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence            999999999998 9999999999999999999999999883       5678999999999999999876443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=4.2e-31  Score=285.24  Aligned_cols=211  Identities=26%  Similarity=0.297  Sum_probs=196.6

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      ....+..+.++||.||..|+.+.++.|+.. +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            345667889999999999999999999976 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCC----------------------
Q 003425          611 EAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRD----------------------  666 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d----------------------  666 (821)
                      +|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++..+                      
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~  176 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE  176 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhh
Confidence            9999999999999999999998764  7899999999999999999999999987654                      


Q ss_pred             --------------------------------CCCCcHHHHHHHc---CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Q 003425          667 --------------------------------YDLRTPLHVAASE---GLYLMAKLLVEAGASVFPKDRWGNTPLDEGRM  711 (821)
Q Consensus       667 --------------------------------~~g~T~Lh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  711 (821)
                                                      ..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||+|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~  256 (351)
T 3utm_A          177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE  256 (351)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             hcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHH
Confidence                                            4577999999998   66899999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          712 CGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       712 ~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      .|+.+++++|+++|++++..+..|.++.+..
T Consensus       257 ~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999999998887643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=4.8e-31  Score=283.07  Aligned_cols=209  Identities=26%  Similarity=0.288  Sum_probs=188.4

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------------
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDIN-------------  599 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------  599 (821)
                      ..+.+|.|+||.||..|++++|+.|+++|+|+|.++. .|+||||+||..|+.+++++|+++|++++             
T Consensus        20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            3456789999999999999999999999999998875 59999999999999999999999988654             


Q ss_pred             --------------------CCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc------------cccchhhHHHhcC
Q 003425          600 --------------------LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE------------EAGSFLCTAVARG  647 (821)
Q Consensus       600 --------------------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~t~l~~A~~~~  647 (821)
                                          ..|..|.||||+|+..|+.+++++|+++|++++..            .|.||||.|+..|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                                45678999999999999999999999999988642            3789999999999


Q ss_pred             CHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 003425          648 DSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGL----YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE  722 (821)
Q Consensus       648 ~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~~g~----~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll  722 (821)
                      +.+++++|++ .|+++|.+|..|.||||.++..+.    .+++++|+++|+++|.+|..|+||||+|+..|+.++++.|+
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            9999999996 699999999999999999886553    46889999999999999999999999999999999999999


Q ss_pred             hc-cccccccCCCCCCccccc
Q 003425          723 DA-KSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       723 ~~-~a~~~~~~~~~~~~~~~~  742 (821)
                      +. |++.+..+..|.++.+.+
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A  280 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLA  280 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHH
T ss_pred             HhcCCcccCcCCCCCCHHHHH
Confidence            85 889999999999887644

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=9.7e-32  Score=270.19  Aligned_cols=193  Identities=23%  Similarity=0.248  Sum_probs=179.1

Q ss_pred             cCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc
Q 003425          549 HGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE  627 (821)
Q Consensus       549 ~g~~~~v~~Ll~~g~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  627 (821)
                      .|+.+++++|++.|++++.. |..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            37788999999999998875 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCc--ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCC
Q 003425          628 GA-SLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNT  704 (821)
Q Consensus       628 ~~-~~~~--~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t  704 (821)
                      ++ +++.  ..|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence            86 5555  45889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccc
Q 003425          705 PLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTAD  741 (821)
Q Consensus       705 ~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~  741 (821)
                      |||+|+..|+.+++++|+++|+++...+..|.++...
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~  197 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI  197 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHH
Confidence            9999999999999999999999999888888776553

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2e-32  Score=282.36  Aligned_cols=194  Identities=19%  Similarity=0.144  Sum_probs=175.8

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHH----cCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC---------
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIR----AGADPNRTD----YDGRSPLHLAA---SRGYEEIMTFLIQKGVD---------  597 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n~~d----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~---------  597 (821)
                      .+.++||.||..|+.+.++.|++    .|++++..+    ..|.||||+|+   ..|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            46799999999999996555554    899998765    77999999999   77999999999998754         


Q ss_pred             --CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc----------------ccchhhHHHhcCCHHHHHHHHH--
Q 003425          598 --INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE----------------AGSFLCTAVARGDSDLLKRVLS--  657 (821)
Q Consensus       598 --~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~t~l~~A~~~~~~~~v~~Ll~--  657 (821)
                        .+..|..|.||||+|+..|+.+++++|+++|++++..+                |.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              44455689999999999999999999999999998865                8899999999999999999999  


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHH
Q 003425          658 -NGIDPNTRDYDLRTPLHVAASEGL---------YLMAKLLVEAGASV-------FPKDRWGNTPLDEGRMCGNKNLIKL  720 (821)
Q Consensus       658 -~g~~~~~~d~~g~T~Lh~A~~~g~---------~~~v~~Ll~~ga~~-------~~~d~~g~t~l~~A~~~~~~~i~~~  720 (821)
                       +|++++.+|..|+||||+|+..|+         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999999887         79999999999999       6799999999999999999999999


Q ss_pred             HHhcccccccc
Q 003425          721 LEDAKSTQLLE  731 (821)
Q Consensus       721 Ll~~~a~~~~~  731 (821)
                      |+++|+++...
T Consensus       244 Ll~~g~~~~~~  254 (260)
T 3jxi_A          244 IIRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHhCCCcccc
Confidence            99999887544

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.5e-31  Score=281.97  Aligned_cols=216  Identities=26%  Similarity=0.339  Sum_probs=187.6

Q ss_pred             HHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          505 RKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       505 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~  584 (821)
                      ...+..++..+..+.....++++.+  ++..+..|.||||.||..|+.+++++|++.|+++|..|..|.||||+|+..|+
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            3445555655555555555555543  45667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc-CCCCCc----------------------------cc
Q 003425          585 EEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE-GASLNV----------------------------EE  635 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~~~----------------------------~~  635 (821)
                      .+++++|+++|++++..|..|.||||+|+..++.++++.++.. +.+++.                            ..
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  198 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCC
Confidence            9999999999999999999999999999999999999887753 444332                            35


Q ss_pred             ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 003425          636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK  715 (821)
Q Consensus       636 ~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~  715 (821)
                      |.||||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||+|+|+.....
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  278 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILG  278 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGH
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999875544


Q ss_pred             HHHHHHH
Q 003425          716 NLIKLLE  722 (821)
Q Consensus       716 ~i~~~Ll  722 (821)
                      .+.+++.
T Consensus       279 ~l~~l~~  285 (299)
T 1s70_B          279 YLEELQK  285 (299)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.97  E-value=6.8e-30  Score=251.07  Aligned_cols=190  Identities=21%  Similarity=0.472  Sum_probs=179.5

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCC
Q 003425          321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS  399 (821)
Q Consensus       321 ~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~  399 (821)
                      +.+..+|+++++.+++||+++++|..||.||++||+|.|++ ..+++++++.||++||.++..+.+.++++++|+|.+++
T Consensus         4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~   83 (198)
T 2ptm_A            4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD   83 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence            45678999999999999999999999999999999999975 47889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE
Q 003425          400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV  479 (821)
Q Consensus       400 ~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a  479 (821)
                      ++++..++..++...|.||++|+++|+.++.+|||.+|.|+++.  .+|+  .+..+++|++|||.+++.+.|++++++|
T Consensus        84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a  159 (198)
T 2ptm_A           84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC  159 (198)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred             HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence            99999999999999999999999999999999999999999986  4554  7889999999999999999999999999


Q ss_pred             ecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       480 ~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      .++|+++.|++++|.++++.+|++...++..+..+
T Consensus       160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r  194 (198)
T 2ptm_A          160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR  194 (198)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            99999999999999999999999999988877654

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=9.7e-31  Score=271.45  Aligned_cols=190  Identities=21%  Similarity=0.253  Sum_probs=179.8

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKDNFGNTPLLEA  612 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~tpL~~A  612 (821)
                      +....+++|.|+..|+.+.++.+++.+.+  +|..|.+|.||||+||..|+.+++++|++.|+ +++..|..|.||||+|
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence            44567889999999999999999988776  89999999999999999999999999999998 9999999999999999


Q ss_pred             H-----HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHH
Q 003425          613 I-----KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMA  685 (821)
Q Consensus       613 ~-----~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v  685 (821)
                      +     ..++.++++.|++.|.+.+..  .|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            9     668899999999999887764  489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425          686 KLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK  725 (821)
Q Consensus       686 ~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~  725 (821)
                      ++|++ .|+|++.+|..|+||||+|+..|+.+++++|++++
T Consensus       233 ~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          233 GLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            99999 89999999999999999999999999999999875

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.97  E-value=8.1e-30  Score=253.49  Aligned_cols=193  Identities=20%  Similarity=0.425  Sum_probs=174.1

Q ss_pred             HHHhc-CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--cccHHHHHhhCcHHHHHHHHHhhhhhhcccc
Q 003425          316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKV  392 (821)
Q Consensus       316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~--~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~  392 (821)
                      +++++ +.+..+|+++++.+++||+++++|.+||.||++||+|.|..  +.+++++++.||++||.++..+++..++ ++
T Consensus         2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~   80 (212)
T 3ukn_A            2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL   80 (212)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence            34555 66778999999999999999999999999999999999964  4678999999999999999999998887 89


Q ss_pred             ccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-
Q 003425          393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-  471 (821)
Q Consensus       393 ~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~-  471 (821)
                      |+|++++++++..++..++...|+||++|+++|+.++.+|||.+|.|+++.   +|  .++..+++|++|||.+++.+. 
T Consensus        81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~  155 (212)
T 3ukn_A           81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQV  155 (212)
T ss_dssp             GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred             HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCC
Confidence            999999999999999999999999999999999999999999999999986   33  678999999999999999988 


Q ss_pred             -CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       472 -~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                       +++++++|.++|+++.|++++|.++++.+|++...+++.+...
T Consensus       156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~  199 (212)
T 3ukn_A          156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHD  199 (212)
T ss_dssp             CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence             9999999999999999999999999999999999998887653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.3e-29  Score=248.18  Aligned_cols=160  Identities=29%  Similarity=0.382  Sum_probs=112.5

Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHH
Q 003425          566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTA  643 (821)
Q Consensus       566 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A  643 (821)
                      |.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            3444445555555555555555555555555555555555555555555555555555555554444332  44555555


Q ss_pred             HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425          644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED  723 (821)
Q Consensus       644 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~  723 (821)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            55566666666677777888899999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q 003425          724 AK  725 (821)
Q Consensus       724 ~~  725 (821)
                      +|
T Consensus       189 ~~  190 (192)
T 2rfm_A          189 VR  190 (192)
T ss_dssp             HH
T ss_pred             cc
Confidence            76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=3.5e-29  Score=239.00  Aligned_cols=161  Identities=27%  Similarity=0.332  Sum_probs=131.8

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      .|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46677777777777777777777777777777777777777777777777777777777777777777777777776666


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP  697 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~  697 (821)
                      .+++++|+                               ++|++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        82 ~~~v~~Ll-------------------------------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           82 TDIVKMLL-------------------------------DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             HHHHHHHH-------------------------------HHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHH-------------------------------HCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            55555554                               45567788888999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      +|..|.||+|+|+..|+.+++++|++++++..
T Consensus       131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999987754

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.96  E-value=4.2e-29  Score=246.20  Aligned_cols=188  Identities=23%  Similarity=0.450  Sum_probs=176.2

Q ss_pred             CchhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCC
Q 003425          321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS  399 (821)
Q Consensus       321 ~~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~  399 (821)
                      +.+..+|+++++.+++||+++++|.+||.||++|++|.|+. ..+++++++.||++||.++..+.+.++++++|+|.+++
T Consensus         5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~   84 (202)
T 3bpz_A            5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD   84 (202)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence            56678999999999999999999999999999999999974 47899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEE
Q 003425          400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV  479 (821)
Q Consensus       400 ~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a  479 (821)
                      ++++..|+..++...|+||++|+++|+.++.+|||.+|.|+++.  .+|++.   .+++|++|||.+++.+.+++++++|
T Consensus        85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a  159 (202)
T 3bpz_A           85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRRTASVRA  159 (202)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBCSSEEEE
T ss_pred             HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCCcccEEEE
Confidence            99999999999999999999999999999999999999999975  455543   5899999999999999999999999


Q ss_pred             ecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       480 ~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      .++|+++.|++++|.++++.+|++...++..+..
T Consensus       160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~  193 (202)
T 3bpz_A          160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  193 (202)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988876654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=7.3e-29  Score=237.22  Aligned_cols=161  Identities=37%  Similarity=0.524  Sum_probs=137.3

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .....+.++|+.||..|+.+++++|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999988888888888888


Q ss_pred             HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                      ..|+.+++++|++                               +|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        89 ~~~~~~~~~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  137 (169)
T 2y1l_E           89 LFGHLEIVEVLLK-------------------------------NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA  137 (169)
T ss_dssp             HTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            7777666665555                               455677788889999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425          694 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAK  725 (821)
Q Consensus       694 ~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~  725 (821)
                      +++.+|..|.||+|+|+..|+.+++++|++.|
T Consensus       138 ~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          138 DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2e-29  Score=241.95  Aligned_cols=168  Identities=24%  Similarity=0.297  Sum_probs=126.6

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      +.+|||.||..|+.+.++.|++.|.+ ++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45789999999999999999988877 78888889999999999999999999999999999888888888888888777


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP  697 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~  697 (821)
                      .+++++|+++|                               ++++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        82 ~~~v~~Ll~~g-------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           82 TDIVGLLLERD-------------------------------VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             HHHHHHHHTTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHcC-------------------------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            77777666655                               45566666677777777777777777777777777777


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCC
Q 003425          698 KDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ  737 (821)
Q Consensus       698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~  737 (821)
                      +|..|.||||+|+..|+.+++++|+++|++....+..+.+
T Consensus       131 ~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~  170 (172)
T 3v30_A          131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD  170 (172)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC------
T ss_pred             cCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCC
Confidence            7777777777777777777777777777766655554443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.9e-29  Score=237.41  Aligned_cols=158  Identities=29%  Similarity=0.385  Sum_probs=131.9

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      ...+|||.|+..|+.++++.|++.|++++..|..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45688888888888888888888888888888888888888888 88888888888888888888888888888877766


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS-VF  696 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~-~~  696 (821)
                      .+++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+++|++ ++
T Consensus        83 ~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  131 (162)
T 1ihb_A           83 LDTLQTLLE-------------------------------FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG  131 (162)
T ss_dssp             HHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHHH-------------------------------cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC
Confidence            666555554                               5566778888899999999999999999999999988 58


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          697 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       697 ~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      .+|..|.||||+|+..|+.+++++|+++||+
T Consensus       132 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          132 HRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8999999999999999999999999999875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=4e-30  Score=260.85  Aligned_cols=208  Identities=22%  Similarity=0.234  Sum_probs=179.0

Q ss_pred             HHHHHHhcCCcchhhhhhhccccc--ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDIT--FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG  583 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g  583 (821)
                      ..++.+......+.....++....  ..++..+..|.||||.||..|+.+++++|++.|++++.+|..|.||||+|+..|
T Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   89 (236)
T 1ikn_D           10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG   89 (236)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT
T ss_pred             chhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            345555555554444444443322  246677888999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc---cccchhhHHHhcCCHHHHHH
Q 003425          584 YEEIMTFLIQKGVD------INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLKR  654 (821)
Q Consensus       584 ~~~~v~~Ll~~g~~------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A~~~~~~~~v~~  654 (821)
                      +.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++..   .|.||||+|+..|+.+++++
T Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  169 (236)
T 1ikn_D           90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL  169 (236)
T ss_dssp             CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999876      4677889999999999999999999999999999875   57899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC--CCCCCCCCHHHHHHHcC
Q 003425          655 VLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF--PKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       655 Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~~A~~~~  713 (821)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|++..  .++..|.||.+.+....
T Consensus       170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC----
T ss_pred             HHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcccc
Confidence            999999999999999999999999999999999999999876  78899999987665443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.1e-28  Score=236.92  Aligned_cols=140  Identities=23%  Similarity=0.265  Sum_probs=115.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425          572 GRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD  650 (821)
Q Consensus       572 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~  650 (821)
                      +.||||.|+..|+.++++.|++.|.+ ++.+|..|.||||+|+..|+.+++++|                          
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L--------------------------   55 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL--------------------------   55 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHH--------------------------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHH--------------------------
Confidence            34677777777777777777776665 666666677777666666655555555                          


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425          651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~  730 (821)
                           +++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus        56 -----l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           56 -----LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             -----HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             -----HHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence                 455667788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccccc
Q 003425          731 EFPHGFQDTADK  742 (821)
Q Consensus       731 ~~~~~~~~~~~~  742 (821)
                      .+..|.++....
T Consensus       131 ~~~~g~t~l~~A  142 (172)
T 3v30_A          131 EADSGYTPMDLA  142 (172)
T ss_dssp             CCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHH
Confidence            999999887643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=5.8e-29  Score=243.46  Aligned_cols=166  Identities=24%  Similarity=0.288  Sum_probs=158.4

Q ss_pred             cccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 003425          527 DITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN  606 (821)
Q Consensus       527 ~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  606 (821)
                      ..++..+..+..|.||||.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        23 ~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  102 (192)
T 2rfm_A           23 NLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK  102 (192)
T ss_dssp             THHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             hhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            34455677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425          607 TPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM  684 (821)
Q Consensus       607 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~  684 (821)
                      ||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999998764  8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 003425          685 AKLLVEAG  692 (821)
Q Consensus       685 v~~Ll~~g  692 (821)
                      +++|+++|
T Consensus       183 v~~Ll~~~  190 (192)
T 2rfm_A          183 IKIFTEVR  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcc
Confidence            99999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.8e-29  Score=267.40  Aligned_cols=195  Identities=19%  Similarity=0.205  Sum_probs=163.2

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN--  617 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~--  617 (821)
                      ..+|.|+..+..++++.|++.|+++|. .|..|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            446888888889999999999999999 89999999999999999999999999999999999999999999999998  


Q ss_pred             -hHHHHHHHhcC-CCCCcc--cccchhhHHHh----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 003425          618 -DGAASLLVKEG-ASLNVE--EAGSFLCTAVA----RGDSDLLKRVLSN--------------------GIDPNTRDYDL  669 (821)
Q Consensus       618 -~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~----~~~~~~v~~Ll~~--------------------g~~~~~~d~~g  669 (821)
                       .++++.|++.+ ++++..  .|.||||+|+.    .|+.+++++|++.                    |++++.+|..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             78888888876 556654  58999999999    8999999999986                    89999999999


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          670 RTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       670 ~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      .||||.|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.+|.+.+.
T Consensus       259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            999999985      8999998  68889999999999999999999999999999999999999999876543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=3.2e-28  Score=246.07  Aligned_cols=170  Identities=28%  Similarity=0.320  Sum_probs=157.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCC-----c--ccccchhhH
Q 003425          571 DGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN-----V--EEAGSFLCT  642 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~-----~--~~~~t~l~~  642 (821)
                      .|+||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|+++|+++.     .  .+|.||||.
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            589999999999999999999998 99999999999999999999999999999999998762     2  358899999


Q ss_pred             HHhcCCHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Q 003425          643 AVARGDSDLLKRVLSNGIDPNTRDY-------------DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEG  709 (821)
Q Consensus       643 A~~~~~~~~v~~Ll~~g~~~~~~d~-------------~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A  709 (821)
                      |+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998866             799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH----HHHHhccccc------cccCCCCCCccc
Q 003425          710 RMCGNKNLI----KLLEDAKSTQ------LLEFPHGFQDTA  740 (821)
Q Consensus       710 ~~~~~~~i~----~~Ll~~~a~~------~~~~~~~~~~~~  740 (821)
                      +..|+.+++    ++|+++|++.      +..+..|.++..
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  202 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK  202 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence            999999988    9999999987      356666666554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=2.1e-29  Score=268.37  Aligned_cols=176  Identities=21%  Similarity=0.189  Sum_probs=154.4

Q ss_pred             ccccc-hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCCCCCCC
Q 003425          530 FHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKDNF  604 (821)
Q Consensus       530 ~~~~~-~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~  604 (821)
                      .+++. .+..|.||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+   .++++.|++.+ ++++.+|..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            44555 78899999999999999999999999999999999999999999999998   78888888886 789999999


Q ss_pred             CCcHHHHHHH----cCChHHHHHHHhc--------------------CCCCCcc--cccchhhHHHhcCCHHHHHHHHHC
Q 003425          605 GNTPLLEAIK----YGNDGAASLLVKE--------------------GASLNVE--EAGSFLCTAVARGDSDLLKRVLSN  658 (821)
Q Consensus       605 g~tpL~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~  658 (821)
                      |.||||+|+.    .|+.+++++|++.                    |++++..  .|.||||.|+.      +++|+++
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence            9999999999    8999999999987                    7777765  48899999996      8999998


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425          659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       659 g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  713 (821)
                        ++|.+|..|+||||+||..|+.++|++|+++|+|++.+|..|+||||+|+.+|
T Consensus       275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence              68899999999999999999999999999999999999999999999998765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.3e-28  Score=226.57  Aligned_cols=151  Identities=32%  Similarity=0.411  Sum_probs=130.6

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      ..++||.|+..|+.++++.|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            5688899999999999999998888876 577888999999999999999999998888888888888888888877776


Q ss_pred             HHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCC
Q 003425          619 GAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK  698 (821)
Q Consensus       619 ~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~  698 (821)
                      +++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        81 ~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           81 NIVEVLLK-------------------------------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHHT-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            66666555                               45567788888999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHH
Q 003425          699 DRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       699 d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      |..|.||+|+|+..|+.+++++|
T Consensus       130 ~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=3.2e-28  Score=231.81  Aligned_cols=160  Identities=34%  Similarity=0.467  Sum_probs=139.0

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .+.++.++||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            467889999999999999999999984 5678888889999999999999999999999999999999999999999888


Q ss_pred             HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                      ..|+.+++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        84 ~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  132 (165)
T 3twr_A           84 SYGHYEVAELLVK-------------------------------HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA  132 (165)
T ss_dssp             HTTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HcCcHHHHHHHHh-------------------------------CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            8777666666655                               456677888889999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425          694 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS  726 (821)
Q Consensus       694 ~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a  726 (821)
                      +++.+|..|.||+|+|+. |+.+++++|+++||
T Consensus       133 ~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          133 DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999877 89999999999886

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=3.6e-28  Score=234.85  Aligned_cols=168  Identities=24%  Similarity=0.258  Sum_probs=134.7

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK  614 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~  614 (821)
                      +.++.++||.||..|+.++++.|++. +.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            34577888888888888888888887 56788888888888888888888888888888888888888888888888887


Q ss_pred             cCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425          615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS  694 (821)
Q Consensus       615 ~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~  694 (821)
                      .|+.+++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        82 ~~~~~~v~~Ll~-------------------------------~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  130 (179)
T 3f6q_A           82 HGHRDIVQKLLQ-------------------------------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL  130 (179)
T ss_dssp             TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHH-------------------------------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            777666665555                               4556677778888888888888888888888888888


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCC
Q 003425          695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPH  734 (821)
Q Consensus       695 ~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~  734 (821)
                      ++.+|..|.||+++|+..++.+++++|+++|++.+.....
T Consensus       131 ~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~  170 (179)
T 3f6q_A          131 VSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYK  170 (179)
T ss_dssp             SSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCC
T ss_pred             cchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCcc
Confidence            8888888888888888888888888888888887655443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=1.1e-27  Score=236.22  Aligned_cols=185  Identities=24%  Similarity=0.377  Sum_probs=164.2

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~  586 (821)
                      .+..+....+.......+... ...++..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+
T Consensus         8 ~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   86 (201)
T 3hra_A            8 ALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE   86 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            344555555555444444433 2345667788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcC-CCCCcc--cccchhhHHHhcCC-----HHHHHHHHH
Q 003425          587 IMTFLI-QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEG-ASLNVE--EAGSFLCTAVARGD-----SDLLKRVLS  657 (821)
Q Consensus       587 ~v~~Ll-~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~~~~~--~~~t~l~~A~~~~~-----~~~v~~Ll~  657 (821)
                      ++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++..  .|.||||.|+..++     .+++++|++
T Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence            999999 567899999999999999999999999999999999 787765  48899999999998     999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       658 ~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      +|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       167 ~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          167 NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.5e-31  Score=264.20  Aligned_cols=186  Identities=20%  Similarity=0.203  Sum_probs=172.1

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEA  612 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A  612 (821)
                      ...+..+.||||.||..|+.++++.|++.|+++|..|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A   94 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA   94 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            35567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCcc---cccchhhHH--HhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q 003425          613 IKYGNDGAASLLVKEGASLNVE---EAGSFLCTA--VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL  687 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A--~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~  687 (821)
                      +..|+.+++++|+++|++++..   +|.||||+|  +..|+.+++++|+++|++++..|..|.||++.++..+..   ++
T Consensus        95 ~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~---~~  171 (229)
T 2vge_A           95 ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD---EL  171 (229)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---BC
T ss_pred             HHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---cc
Confidence            9999999999999999999864   689999999  999999999999999999999999999999976655433   67


Q ss_pred             HHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          688 LVEAGAS--VFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       688 Ll~~ga~--~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      |++.|++  ++.+|..|+||||+|+..|+.++++.+
T Consensus       172 ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             CBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             CccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            8889998  778899999999999999999888653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=7.8e-28  Score=232.47  Aligned_cols=142  Identities=20%  Similarity=0.238  Sum_probs=120.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          570 YDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       570 ~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      .++.+|||.||..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+                       
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----------------------   59 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------------------   59 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence            4567788888888888888888887 5677777877888887777766665555555                       


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                              ++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        60 --------~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  131 (179)
T 3f6q_A           60 --------MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV  131 (179)
T ss_dssp             --------HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             --------HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence                    456677888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCccccc
Q 003425          729 LLEFPHGFQDTADK  742 (821)
Q Consensus       729 ~~~~~~~~~~~~~~  742 (821)
                      ...+..|.++....
T Consensus       132 ~~~~~~g~tpl~~A  145 (179)
T 3f6q_A          132 SICNKYGEMPVDKA  145 (179)
T ss_dssp             SBCCTTSCCGGGGS
T ss_pred             chhccCCCCcHHHH
Confidence            99999999998754

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=3.3e-28  Score=252.54  Aligned_cols=206  Identities=18%  Similarity=0.211  Sum_probs=163.7

Q ss_pred             hchHHHHHHHhcCCcchhhhhhhccc--cccccc----chhhhHhhhHHHHhhc---CCHHHHHHHHHcCCCC-------
Q 003425          502 CDGRKVLTNLLQGKESDLRLKQLQSD--ITFHIS----KHEAELALKVNSAAYH---GDLYQLEGLIRAGADP-------  565 (821)
Q Consensus       502 ~~~~~~l~~~l~~~~~~~~~~~l~~~--~~~~~~----~~~~~~~~~L~~A~~~---g~~~~v~~Ll~~g~~~-------  565 (821)
                      ..+...+..+....+.+.....++..  ....++    ..+..|.||||+||..   |+.+++++|++.|+++       
T Consensus        11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i   90 (273)
T 2pnn_A           11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV   90 (273)
T ss_dssp             CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHh
Confidence            34556677777766665444444321  111222    3478899999999986   9999999999998653       


Q ss_pred             C----CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------CCCcHHHHHHHcCChHHHHHHHh-
Q 003425          566 N----RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN--------------FGNTPLLEAIKYGNDGAASLLVK-  626 (821)
Q Consensus       566 n----~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--------------~g~tpL~~A~~~~~~~~v~~Ll~-  626 (821)
                      |    ..|..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|++ 
T Consensus        91 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~  170 (273)
T 2pnn_A           91 NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN  170 (273)
T ss_dssp             TCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred             hcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            2    2567899999999999999999999999999999987              79999999999999999999999 


Q ss_pred             --cCCCCCcc--cccchhhHHHhcCC---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHcCcHHHHH
Q 003425          627 --EGASLNVE--EAGSFLCTAVARGD---------SDLLKRVLSNGIDPN-------TRDYDLRTPLHVAASEGLYLMAK  686 (821)
Q Consensus       627 --~~~~~~~~--~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~~-------~~d~~g~T~Lh~A~~~g~~~~v~  686 (821)
                        +|++++..  +|.||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..|+.++++
T Consensus       171 ~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence              99999876  48899999999998         899999999999997       48999999999999999999999


Q ss_pred             HHHHcCC-CCCCCCCCCCCHHH
Q 003425          687 LLVEAGA-SVFPKDRWGNTPLD  707 (821)
Q Consensus       687 ~Ll~~ga-~~~~~d~~g~t~l~  707 (821)
                      +|+++|| |+......+.+|-+
T Consensus       251 ~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          251 YILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHTC--------------
T ss_pred             HHHHCCCCCchhhhhhhhhccC
Confidence            9999999 88888777776643

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=5.8e-28  Score=248.14  Aligned_cols=172  Identities=22%  Similarity=0.208  Sum_probs=158.7

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCCcHHHHHHHc---CChHHHHHHHhcCCCCCc------
Q 003425          571 DGRSPLHLAASRGYEE----IMTFLIQKGVDINL----KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNV------  633 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~------  633 (821)
                      .|+||||.||..|+.+    ++++|+++|++++.    +|..|.||||+|+..   |+.+++++|+++|++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3889999999999997    66778889999998    899999999999999   999999999999887652      


Q ss_pred             -------ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHcCcHHHHHHHHH---
Q 003425          634 -------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD-------------LRTPLHVAASEGLYLMAKLLVE---  690 (821)
Q Consensus       634 -------~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~T~Lh~A~~~g~~~~v~~Ll~---  690 (821)
                             ..|.||||+|+..|+.+++++|+++|++++..|..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                   34899999999999999999999999999999886             9999999999999999999999   


Q ss_pred             cCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhccccc-------cccCCCCCCccccc
Q 003425          691 AGASVFPKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKSTQ-------LLEFPHGFQDTADK  742 (821)
Q Consensus       691 ~ga~~~~~d~~g~t~l~~A~~--~~~~~-------i~~~Ll~~~a~~-------~~~~~~~~~~~~~~  742 (821)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|++.       +..+..|.++.+.+
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence            999999999999999999999  88888       999999999999       77888887776543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=4.6e-27  Score=221.45  Aligned_cols=153  Identities=25%  Similarity=0.398  Sum_probs=132.4

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      +.++||.||..|+.++++.|++. +.+++..|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            57899999999999999999988 44888889999999999 88899999999999999999988888888888888777


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP  697 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~  697 (821)
                      .+++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+++ ++++.
T Consensus        81 ~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~  128 (156)
T 1bd8_A           81 LDTLKVLVE-------------------------------HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHR  128 (156)
T ss_dssp             HHHHHHHHH-------------------------------TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTC
T ss_pred             HHHHHHHHH-------------------------------cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCC
Confidence            666666655                               4556777888899999999999999999999988 99999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          698 KDRWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       698 ~d~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                      +|..|.||||+|+..|+.+++++|+++
T Consensus       129 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          129 RDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999864

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=7.2e-27  Score=221.85  Aligned_cols=161  Identities=34%  Similarity=0.475  Sum_probs=133.7

Q ss_pred             chHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR  582 (821)
Q Consensus       503 ~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~  582 (821)
                      .++.++ .+...++.+....+++++.+  ++..+..|.||||.|+..|+.++++.|++.|++++.+|.+|+||||+|+..
T Consensus         4 lg~~L~-~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            4 LGKRLI-EAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHH-HHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHH-HHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc
Confidence            344433 45566677777777777654  556788999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCC
Q 003425          583 GYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDP  662 (821)
Q Consensus       583 g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~  662 (821)
                      |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|++                               +|+++
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~-------------------------------~gad~  129 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS-------------------------------KGADV  129 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------------------TTCCT
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-------------------------------cCCCc
Confidence            99999999999999999999999999999988877766666655                               45677


Q ss_pred             CCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCC
Q 003425          663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFP  697 (821)
Q Consensus       663 ~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~  697 (821)
                      +.+|..|+||||+|+..|+.+++++|+++||+++.
T Consensus       130 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          130 NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            78888899999999999999999999999998865

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.8e-28  Score=246.43  Aligned_cols=178  Identities=16%  Similarity=0.062  Sum_probs=101.8

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~  615 (821)
                      +..|.||||.|+..|+.+.++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            346889999999999999999999999888754 6788999999999999999999999999999998899999999888


Q ss_pred             CChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--HHcCcHHHHHHHHH
Q 003425          616 GNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR-TPLHVA--ASEGLYLMAKLLVE  690 (821)
Q Consensus       616 ~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-T~Lh~A--~~~g~~~~v~~Ll~  690 (821)
                      |+.+++++|+++|++++..+  |.||||.|+..|+.+++++|+++|++++..|..|. ||||+|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            88888888888777665543  55666666666666666666666666666665554 666666  55566666666666


Q ss_pred             cCCCCCCC---------CCCCCCHHHHHHHcCC
Q 003425          691 AGASVFPK---------DRWGNTPLDEGRMCGN  714 (821)
Q Consensus       691 ~ga~~~~~---------d~~g~t~l~~A~~~~~  714 (821)
                      +|++++..         +..|.+|+++|...|.
T Consensus       161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             hhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            66655544         3345555555555443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=2.6e-27  Score=243.89  Aligned_cols=194  Identities=19%  Similarity=0.213  Sum_probs=161.0

Q ss_pred             hHHHHHHHhcCCcchhhhhhhc----cccccccc--chhhhHhhhHHHHh---hcCCHHHHHHHHHcCCC----------
Q 003425          504 GRKVLTNLLQGKESDLRLKQLQ----SDITFHIS--KHEAELALKVNSAA---YHGDLYQLEGLIRAGAD----------  564 (821)
Q Consensus       504 ~~~~l~~~l~~~~~~~~~~~l~----~~~~~~~~--~~~~~~~~~L~~A~---~~g~~~~v~~Ll~~g~~----------  564 (821)
                      .+..+..+...++.......++    .+......  ..+..|.||||.|+   ..|+.+++++|++.|++          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            3444555555555443333332    33333222  23477999999999   77999999999998754          


Q ss_pred             -CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--------------CCCCcHHHHHHHcCChHHHHHHHh---
Q 003425          565 -PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD--------------NFGNTPLLEAIKYGNDGAASLLVK---  626 (821)
Q Consensus       565 -~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~tpL~~A~~~~~~~~v~~Ll~---  626 (821)
                       .+..|..|.||||+||..|+.+++++|+++|++++.++              ..|.||||+|+..|+.+++++|++   
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence             34556689999999999999999999999999999998              689999999999999999999999   


Q ss_pred             cCCCCCcc--cccchhhHHHhcCC---------HHHHHHHHHCCCCC-------CCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          627 EGASLNVE--EAGSFLCTAVARGD---------SDLLKRVLSNGIDP-------NTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       627 ~~~~~~~~--~~~t~l~~A~~~~~---------~~~v~~Ll~~g~~~-------~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      +|++++..  .|.||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+..|+.+++++|
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            89999876  48999999999888         79999999999998       67999999999999999999999999


Q ss_pred             HHcCCCCCC
Q 003425          689 VEAGASVFP  697 (821)
Q Consensus       689 l~~ga~~~~  697 (821)
                      +++|++...
T Consensus       245 l~~g~~~~~  253 (260)
T 3jxi_A          245 IRREIADAA  253 (260)
T ss_dssp             HHHHHHHHC
T ss_pred             HHhCCCccc
Confidence            999877543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=8.6e-27  Score=241.70  Aligned_cols=165  Identities=21%  Similarity=0.268  Sum_probs=156.1

Q ss_pred             ccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCC
Q 003425          528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAA-----SRGYEEIMTFLIQKGVDINLK  601 (821)
Q Consensus       528 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~-~~n~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~  601 (821)
                      .+..++..|..|.||||+||..|+.++++.|++.|+ +++..|..|.||||+|+     ..++.+++++|++.|++++..
T Consensus       100 ~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~  179 (276)
T 4hbd_A          100 LDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA  179 (276)
T ss_dssp             HHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC
T ss_pred             HhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc
Confidence            344467788999999999999999999999999998 99999999999999999     668999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHH
Q 003425          602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVAAS  678 (821)
Q Consensus       602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~  678 (821)
                      +..|.||||+|+..|+.+++++|+++|++++..  +|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+.
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~  259 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALD  259 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999999875  48999999999999999999999 899999999999999999999


Q ss_pred             cCcHHHHHHHHHcC
Q 003425          679 EGLYLMAKLLVEAG  692 (821)
Q Consensus       679 ~g~~~~v~~Ll~~g  692 (821)
                      .|+.+++++|++++
T Consensus       260 ~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          260 AGQSEIASMLYSRM  273 (276)
T ss_dssp             HTCHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHhcc
Confidence            99999999999874

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.94  E-value=1.6e-26  Score=230.42  Aligned_cols=207  Identities=20%  Similarity=0.190  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHHHhhhcceeee--eecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhhh
Q 003425           75 AWTKFILIWAVYSSIFTPVEFG--FFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF  152 (821)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~f  152 (821)
                      .|+.+++++++++.+..++...  +..+....+..+|.+++++|++|+++||+++            +.+  ++|+|+ +
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~------------~~~--~~y~~~-~   73 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDP--AGYVKK-T   73 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT------------SCH--HHHHHH-H
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccc------------ccH--HHHHHH-h
Confidence            4888888888888887766543  3334456678999999999999999999765            223  799998 9


Q ss_pred             HHHHHhhhhHHHHHhh-cCc--hhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          153 IIDLFSCMPWDLIYKA-SGR--KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYY  229 (821)
Q Consensus       153 ~iDlis~lP~~~~~~~-~~~--~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~  229 (821)
                      ++|+++++|+++.... .+.  ...++.+|++|++|+.|+.+...+..+.........++..++..++++.|+.||++|+
T Consensus        74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (223)
T 1orq_C           74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI  153 (223)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999876531 111  2345566666666666555433232222211112235667777888889999999998


Q ss_pred             HHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHH
Q 003425          230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAY  309 (821)
Q Consensus       230 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~  309 (821)
                      ++...++     +|                   +.+|.+|+||+++|||||||||++|.|+.|++++++++++|+.++|+
T Consensus       154 ~e~~~~~-----~~-------------------~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~  209 (223)
T 1orq_C          154 VEYPDPN-----SS-------------------IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL  209 (223)
T ss_dssp             TTSSSTT-----CS-------------------CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCcC-----CC-------------------cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence            7542111     00                   22699999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q 003425          310 LIGNMTALIVK  320 (821)
Q Consensus       310 ~i~~i~~~~~~  320 (821)
                      ++|.+++.+.+
T Consensus       210 ~i~~i~~~~~~  220 (223)
T 1orq_C          210 LIGTVSNMFQK  220 (223)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=5.2e-27  Score=226.83  Aligned_cols=167  Identities=22%  Similarity=0.288  Sum_probs=144.5

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYE----EIMTFLIQKGVDINLKDNFGNTPLLEA  612 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~tpL~~A  612 (821)
                      .+.++|+.||..|+.+.++.+++.+.  +..+ ..|+||||+|+.+|+.    +++++|+++|+++|.+|..|+||||+|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            46689999999999999999998774  4455 6799999999999975    599999999999999999999999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHc-----CcHHHHH
Q 003425          613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLR-TPLHVAASE-----GLYLMAK  686 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-T~Lh~A~~~-----g~~~~v~  686 (821)
                      +..++.++.+                         ..+++++|+++|+++|.+|..|+ ||||+|+..     ++.++++
T Consensus        83 ~~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~  137 (186)
T 3t8k_A           83 FQGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK  137 (186)
T ss_dssp             HHHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred             HHcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence            9988765432                         24678888899999999999999 999999984     3567999


Q ss_pred             HHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425          687 LLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       687 ~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~  731 (821)
                      +|++ +|+|++.+|..|+||||+|+..|+.+++++|++...+...+
T Consensus       138 ~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            9999 99999999999999999999999999999999877655443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=5.6e-27  Score=237.78  Aligned_cols=165  Identities=22%  Similarity=0.234  Sum_probs=122.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhc
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVAR  646 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~  646 (821)
                      +..|.||||.|+..|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..  .|.||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            356999999999999999999999999999864 77899999999999999999999999998875  489999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCC-CHHHHH--HHcCCHHHHHHHHh
Q 003425          647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN-TPLDEG--RMCGNKNLIKLLED  723 (821)
Q Consensus       647 ~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~-t~l~~A--~~~~~~~i~~~Ll~  723 (821)
                      |+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|. ||+|+|  +..|+.+++++|++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998877 999999  88899999999999


Q ss_pred             ccccccccCCC
Q 003425          724 AKSTQLLEFPH  734 (821)
Q Consensus       724 ~~a~~~~~~~~  734 (821)
                      +|++....+..
T Consensus       161 ~~a~~~~~~~~  171 (239)
T 1ycs_B          161 VQEKMGIMNKG  171 (239)
T ss_dssp             HHHHTTTTGGG
T ss_pred             hhhcccccccc
Confidence            99998776443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.4e-27  Score=235.04  Aligned_cols=187  Identities=18%  Similarity=0.054  Sum_probs=160.2

Q ss_pred             HHHHHHcCCCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCC
Q 003425          555 LEGLIRAGADPNRT---DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL  631 (821)
Q Consensus       555 v~~Ll~~g~~~n~~---d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~  631 (821)
                      ++.|+++|++++..   +.+|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            46788999987655   456778899999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCcHHHHHHHHHcCCCCCCCCCCCCCHH
Q 003425          632 NVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVA--ASEGLYLMAKLLVEAGASVFPKDRWGNTPL  706 (821)
Q Consensus       632 ~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A--~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l  706 (821)
                      +..  .|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            876  48899999999999999999999999999987 6999999999  999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcccc--ccccCCCCCCccccccC
Q 003425          707 DEGRMCGNKNLIKLLEDAKST--QLLEFPHGFQDTADKRN  744 (821)
Q Consensus       707 ~~A~~~~~~~i~~~Ll~~~a~--~~~~~~~~~~~~~~~~~  744 (821)
                      +.++..+.   .++|++.|++  ....+..|.++...+..
T Consensus       161 ~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~  197 (229)
T 2vge_A          161 WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAAL  197 (229)
T ss_dssp             SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred             HHHhhccc---cccCccccccccccccCCCcccHHHHHHH
Confidence            96655543   3688999998  56778889888875443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2.6e-25  Score=203.92  Aligned_cols=134  Identities=30%  Similarity=0.445  Sum_probs=107.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhh
Q 003425          562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC  641 (821)
Q Consensus       562 g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~  641 (821)
                      +++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|++               
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~---------------   65 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLL---------------   65 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHH---------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHH---------------
Confidence            45677777778888888888888888888888777777777777777777766 66655555555               


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 003425          642 TAVARGDSDLLKRVLSNGIDPNTRDYD-LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL  720 (821)
Q Consensus       642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~-g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~  720 (821)
                                      +|++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++
T Consensus        66 ----------------~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           66 ----------------HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             ----------------HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             ----------------CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence                            55666777777 8899999999999999999999999999988899999999999999999999


Q ss_pred             HHhcccc
Q 003425          721 LEDAKST  727 (821)
Q Consensus       721 Ll~~~a~  727 (821)
                      |+++|++
T Consensus       130 Ll~~Gad  136 (136)
T 1d9s_A          130 LHAATGD  136 (136)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            9988875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=2.4e-25  Score=204.22  Aligned_cols=132  Identities=24%  Similarity=0.313  Sum_probs=119.0

Q ss_pred             cccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-CCcHH
Q 003425          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF-GNTPL  609 (821)
Q Consensus       531 ~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~tpL  609 (821)
                      +++..+..|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+. |+.+++++|+++|++++.+|.. |.|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            456778889999999999999999999999999999999999999999999 9999999999999999999998 89999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425          610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      |+|+..|+.+++++|++                               +|++++.+|..|.||||+|+..|+.+++++|+
T Consensus        83 ~~A~~~~~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHR-------------------------------AGARLDVCDAWGRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             HHHHHHTCHHHHHHHHH-------------------------------TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHH-------------------------------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99988777766666655                               45567778888999999999999999999999


Q ss_pred             HcCCC
Q 003425          690 EAGAS  694 (821)
Q Consensus       690 ~~ga~  694 (821)
                      ++|||
T Consensus       132 ~~Gad  136 (136)
T 1d9s_A          132 AATGD  136 (136)
T ss_dssp             HHHCC
T ss_pred             HcCCC
Confidence            99886

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.3e-25  Score=211.33  Aligned_cols=139  Identities=23%  Similarity=0.236  Sum_probs=68.0

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccc-hhhHHH
Q 003425          568 TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGS-FLCTAV  644 (821)
Q Consensus       568 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t-~l~~A~  644 (821)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+  |.| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            3444555555555555555555555555555555555555555542 444444444444444333321  233 444444


Q ss_pred             hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 003425          645 ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD  707 (821)
Q Consensus       645 ~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  707 (821)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            444444555555556666777777777777777777777777777777777777777777765

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.92  E-value=6.3e-26  Score=251.53  Aligned_cols=287  Identities=13%  Similarity=0.138  Sum_probs=162.3

Q ss_pred             ccccccCCcCeEEcCCC-hhHHHHHHHHHHHHHHHhhhcceeee--eecC--------------------------CCcC
Q 003425           54 LSGFRHFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFG--FFRG--------------------------LSKN  104 (821)
Q Consensus        54 ~~~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~  104 (821)
                      ...+|.+.|.++.+|.| ...++|+.+++++++++++++.+...  +...                          ....
T Consensus       161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2r9r_B          161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP  240 (514)
T ss_dssp             SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence            45677888888888975 56788888888888888777665532  1110                          2334


Q ss_pred             eehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcC----c---hhHHH
Q 003425          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASG----R---KEAVR  176 (821)
Q Consensus       105 ~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~----~---~~~~~  176 (821)
                      +.++|+++.++|++|++++++++            +.+  ++|+++ |+++|+++++|+++.+....    .   ...++
T Consensus       241 l~~ie~i~~~iFtiE~ilR~~~~------------~~k--~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~  306 (514)
T 2r9r_B          241 FFIVETLCIIWFSFEFLVRFFAC------------PSK--AGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRR  306 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS------------SCS--SSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC------------CcH--HHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Confidence            67899999999999999988654            212  589999 77999999999876554321    1   11134


Q ss_pred             HHHHHHHHHHHHHHHHHHh---hhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCC
Q 003425          177 YLLWIRLYRVRKVSQFFHK---MEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY  252 (821)
Q Consensus       177 ~l~llrl~rl~r~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~  252 (821)
                      .+|++|++|++|+.++.+.   ++.... +......+..+++++++.++++|+++|++....+     .           
T Consensus       307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~-----~-----------  370 (514)
T 2r9r_B          307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADER-----D-----------  370 (514)
T ss_dssp             HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT-----T-----------
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCC-----C-----------
Confidence            4444555555444444433   332221 1222334555556666777888888887643211     0           


Q ss_pred             CcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 003425          253 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMT  332 (821)
Q Consensus       253 ~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~  332 (821)
                              +.+.+|..|+||+++|||||||||+.|.++.+++++++++++|+++++++++.+.+.+....+.++.++..+
T Consensus       371 --------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~~~~  442 (514)
T 2r9r_B          371 --------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQA  442 (514)
T ss_dssp             --------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------
T ss_pred             --------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    113468999999999999999999999999999999999999999999999999887765322222222222


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhccccHHHHHhhCcHHHHHHHHHhh
Q 003425          333 DLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTL  384 (821)
Q Consensus       333 ~~~~~m~~~~lp~~l~~ri~~y~~~~~~~~~~~~~~l~~lp~~L~~~i~~~~  384 (821)
                      ..++++.....|.....+-     + -.+...++.-..+|.+.++.++....
T Consensus       443 l~~h~iicg~~~~~~~l~~-----~-~~~~~~~~s~~~el~e~~~~~~~~~~  488 (514)
T 2r9r_B          443 QYLQVTSSPKIPSSPDLKK-----S-RSASTISKSDYMEIQEGVNNSNEDFR  488 (514)
T ss_dssp             ----------------------------------------------------
T ss_pred             hhCCEEEeCCCccchhHHh-----c-ccCCCccccccccccccccccccccc
Confidence            2233444333343322110     0 01122334445667777776665443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=2.4e-26  Score=246.66  Aligned_cols=186  Identities=15%  Similarity=0.031  Sum_probs=145.3

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcH
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTP  608 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~tp  608 (821)
                      .+.++.||||.||..|+.++|++|++.|+..   +..+..|.||||+||..|+.+++++|+++|+++   +..+.+ .||
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp  166 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA  166 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence            4455679999999999999999999888732   234456788999999999999999999998762   222233 899


Q ss_pred             HHHHHHcCChHHHHHHHhcCCCCCc--c--cccchhhHHH-hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 003425          609 LLEAIKYGNDGAASLLVKEGASLNV--E--EAGSFLCTAV-ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL  683 (821)
Q Consensus       609 L~~A~~~~~~~~v~~Ll~~~~~~~~--~--~~~t~l~~A~-~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~  683 (821)
                      ||+|+..|+.+++++|+++|++++.  .  +|.||||.|+ ..|+.+++++|+++|++       |.||||.|+..|+.+
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHH
Confidence            9999999999999999999988654  3  4789999999 99999999999987742       789999999999988


Q ss_pred             HHHHHHHcCCCCC-------------------------------------------------------------CCCCCC
Q 003425          684 MAKLLVEAGASVF-------------------------------------------------------------PKDRWG  702 (821)
Q Consensus       684 ~v~~Ll~~ga~~~-------------------------------------------------------------~~d~~g  702 (821)
                      ++++|+++|++++                                                             ...+.+
T Consensus       240 vv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~  319 (376)
T 2aja_A          240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDA  319 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCC
T ss_pred             HHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCc
Confidence            8888887765321                                                             112346


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          703 NTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       703 ~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                      .||||+|+..|+.+++++|++.|+-.
T Consensus       320 ~~~L~~A~~~g~~e~v~lLl~~~~v~  345 (376)
T 2aja_A          320 NELLRLALRLGNQGACALLLSIPSVL  345 (376)
T ss_dssp             CHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred             cHHHHHHHHcCcHHHHHHHHcChHHH
Confidence            68899999999999999999876543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=7.2e-25  Score=206.26  Aligned_cols=143  Identities=21%  Similarity=0.238  Sum_probs=118.0

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT-PLLE  611 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-pL~~  611 (821)
                      ...+..|.||||.||..|+.+++++|++.|+++|..|..|.||||+|+ .|+.+++++|+++|++++.+|..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            355677899999999999999999999999999999999999999985 99999999999999999999999999 9999


Q ss_pred             HHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 003425          612 AIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA  676 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A  676 (821)
                      |+..|+.+++++|+++|++++..  .|.||||+|+..|+.+++++|+++|++++.+|..|.||.+.+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999875  488999999999999999999999999999999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=1.4e-23  Score=198.92  Aligned_cols=156  Identities=24%  Similarity=0.290  Sum_probs=131.0

Q ss_pred             HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE  585 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~  585 (821)
                      ..+..+......+.....++++.+  ++..+..|.||||.|+. |+.+++++|++.|++++.+|..|.||||+|+..|+.
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            344555555555555555655443  45667889999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425          586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR  665 (821)
Q Consensus       586 ~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  665 (821)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++                              +++..
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------~~~~~  133 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS------------------------------NVGHR  133 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC------------------------------CTTCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC------------------------------CCCCc
Confidence            999999999999999999999999999998888888888776653                              24677


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425          666 DYDLRTPLHVAASEGLYLMAKLLVEAGAS  694 (821)
Q Consensus       666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~  694 (821)
                      |..|.||||+|+..|+.+++++|+++|||
T Consensus       134 ~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          134 NHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            88899999999999999999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.9e-23  Score=187.38  Aligned_cols=126  Identities=44%  Similarity=0.645  Sum_probs=94.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425          571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD  650 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~  650 (821)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++                        
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------------------------   56 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE------------------------   56 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------------------------
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH------------------------
Confidence            46777777777777777777777777777777777777777776666555555554                        


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                             +|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..|+.+++++|+++|++
T Consensus        57 -------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           57 -------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -------cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                   4455666677778888888888888888888888888888888888888888888888888888887764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.5e-23  Score=192.26  Aligned_cols=64  Identities=36%  Similarity=0.465  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          661 DPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       661 ~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                      +++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        72 ~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            3344444455555555555555555555555555555555555555555555555555555544

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=2.6e-23  Score=198.12  Aligned_cols=140  Identities=25%  Similarity=0.306  Sum_probs=122.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHH
Q 003425          571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSD  650 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~  650 (821)
                      .|.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++                        
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------------------------   57 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ------------------------   57 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH------------------------
Confidence            57788888888888888888888888888888888888888887777666666555                        


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccc
Q 003425          651 LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLL  730 (821)
Q Consensus       651 ~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~  730 (821)
                             +|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus        58 -------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  130 (167)
T 3v31_A           58 -------NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI  130 (167)
T ss_dssp             -------TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             -------cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                   4556677888999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCcccc
Q 003425          731 EFPHGFQDTAD  741 (821)
Q Consensus       731 ~~~~~~~~~~~  741 (821)
                      .+..|.++...
T Consensus       131 ~~~~g~t~l~~  141 (167)
T 3v31_A          131 ETDSGYNSMDL  141 (167)
T ss_dssp             CCTTSCCHHHH
T ss_pred             cCCCCCCHHHH
Confidence            88888776553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=3.3e-23  Score=189.86  Aligned_cols=128  Identities=33%  Similarity=0.414  Sum_probs=107.2

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      .....+.||||.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999988999988888


Q ss_pred             HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      ..|+.+++++|++                               +|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLK-------------------------------HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHH-------------------------------cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8777666666655                               45566777888889999999888889998888876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=3.8e-24  Score=196.53  Aligned_cols=134  Identities=36%  Similarity=0.455  Sum_probs=106.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhh
Q 003425          562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLC  641 (821)
Q Consensus       562 g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~  641 (821)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++               
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~---------------   64 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ---------------   64 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH---------------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH---------------
Confidence            5677 677888888888888888888888888888888888888888888877766666665555               


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          642 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                                      +|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+|+|+..++.+++++|
T Consensus        65 ----------------~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           65 ----------------HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             ----------------TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             ----------------cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence                            4556777888899999999999999999999999999999999999999999999998888888


Q ss_pred             Hhcccc
Q 003425          722 EDAKST  727 (821)
Q Consensus       722 l~~~a~  727 (821)
                      .+.++.
T Consensus       129 ~~~~~s  134 (137)
T 3c5r_A          129 EKNESS  134 (137)
T ss_dssp             ------
T ss_pred             cccccC
Confidence            776654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=6.5e-23  Score=195.72  Aligned_cols=142  Identities=30%  Similarity=0.324  Sum_probs=122.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      ...+.||||.||..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++                      
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----------------------   68 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK----------------------   68 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----------------------
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----------------------
Confidence            3456788888888888888888888888888888888888888877776666665555                      


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                               +|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus        69 ---------~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           69 ---------NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             ---------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ---------cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                     55567788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCcccc
Q 003425          729 LLEFPHGFQDTAD  741 (821)
Q Consensus       729 ~~~~~~~~~~~~~  741 (821)
                      ...+..|.++...
T Consensus       140 ~~~~~~g~t~l~~  152 (169)
T 2y1l_E          140 NAQDKFGKTAFDI  152 (169)
T ss_dssp             TCCCTTSCCHHHH
T ss_pred             CCcCCCCCCHHHH
Confidence            8888888777653

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=7.4e-23  Score=184.73  Aligned_cols=126  Identities=43%  Similarity=0.603  Sum_probs=113.9

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      +|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS  694 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~  694 (821)
                      .+++++|+++                               |++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus        81 ~~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7666666554                               556677788899999999999999999999999886

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=2e-25  Score=239.51  Aligned_cols=179  Identities=13%  Similarity=0.024  Sum_probs=156.1

Q ss_pred             hHhhhHHHHhh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHH
Q 003425          538 ELALKVNSAAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI---NLKDNFGNTPLLEAI  613 (821)
Q Consensus       538 ~~~~~L~~A~~-~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~tpL~~A~  613 (821)
                      .+.++++.|+. .++.+.++++++.|.+.       .||||+||..|+.+++++|+++|+..   +..+..|.||||+|+
T Consensus        64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            45678888877 58899999999988654       59999999999999999999999832   234456789999999


Q ss_pred             HcCChHHHHHHHhcCCC-----CCcccccchhhHHHhcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HcCcHHHH
Q 003425          614 KYGNDGAASLLVKEGAS-----LNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT--RDYDLRTPLHVAA-SEGLYLMA  685 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~-----~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~T~Lh~A~-~~g~~~~v  685 (821)
                      ..|+.+++++|+++|++     ++..+ .||||.|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.++|
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            99999999999999975     44445 8999999999999999999999999887  8888999999999 99999999


Q ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425          686 KLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       686 ~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~  731 (821)
                      ++|+++|++       |.|||++|+..|+.+++++|+++|++....
T Consensus       216 ~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          216 NFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccc
Confidence            999998753       899999999999999999999999887544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=8.6e-23  Score=197.62  Aligned_cols=143  Identities=26%  Similarity=0.282  Sum_probs=120.8

Q ss_pred             cchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 003425          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLE  611 (821)
Q Consensus       533 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~  611 (821)
                      ...+..|.||||.||..|+.++++.|++ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+
T Consensus        38 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           38 ADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            3456789999999999999999999999 99999999999999999999999999999999999999988 889999998


Q ss_pred             HHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          612 AIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      |+..|+.+++++|+++                               |++++.+|..|.||||+|+..++.         
T Consensus       117 A~~~~~~~~v~~Ll~~-------------------------------ga~~~~~d~~g~tpl~~A~~~~~~---------  156 (183)
T 3deo_A          117 AAGYVRPEVVEALVEL-------------------------------GADIEVEDERGLTALELAREILKT---------  156 (183)
T ss_dssp             HHHTTCHHHHHHHHHH-------------------------------TCCTTCCCTTSCCHHHHHHHHHHT---------
T ss_pred             HHhcCcHHHHHHHHHc-------------------------------CCCCcCCCCCCCCHHHHHHHhccC---------
Confidence            8887777776666665                               456677778888888888764432         


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       692 ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                              ..+.+|+++|+..|+.+++++|.++
T Consensus       157 --------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 --------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             --------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             --------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                    3467888888888888888888754

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=1.4e-22  Score=192.55  Aligned_cols=143  Identities=29%  Similarity=0.307  Sum_probs=114.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcC
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARG  647 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~  647 (821)
                      |.+|.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.                             
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~-----------------------------   55 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV-----------------------------   55 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCH-----------------------------
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChH-----------------------------
Confidence            4456666666666666666666666 3445555566666666666655554                             


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          648 DSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       648 ~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                        +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        56 --~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           56 --SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             --HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             --HHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence              455555556677888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccc
Q 003425          728 QLLEFPHGFQDTADK  742 (821)
Q Consensus       728 ~~~~~~~~~~~~~~~  742 (821)
                      +...+..|.++....
T Consensus       134 ~~~~~~~g~t~l~~a  148 (165)
T 3twr_A          134 PTKKNRDGNTPLDLV  148 (165)
T ss_dssp             TTCCCTTSCCTGGGS
T ss_pred             CcccCCCCCChhHhH
Confidence            999999888877653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=7.2e-23  Score=207.92  Aligned_cols=146  Identities=25%  Similarity=0.263  Sum_probs=123.6

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD-NFGNTPLLEA  612 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~tpL~~A  612 (821)
                      ..+..|.||||.||..|+.++++.|++ |+++|.+|..|.||||+||..|+.+++++|+++|++++.++ ..|.||||+|
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            445688999999999999999999999 99999999999999999999999999999999999999888 7788888888


Q ss_pred             HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      +..|+.+++++|++                               +|++++.+|..|.||||+|+..++           
T Consensus       119 ~~~g~~~~v~~Ll~-------------------------------~ga~~~~~d~~g~t~l~~A~~~~~-----------  156 (244)
T 3ui2_A          119 AGYVRPEVVEALVE-------------------------------LGADIEVEDERGLTALELAREILK-----------  156 (244)
T ss_dssp             HHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTCCCHHHHHHHHHT-----------
T ss_pred             HHcCCHHHHHHHHH-------------------------------CCCCCCCCCCCCCcHHHHHHHHHh-----------
Confidence            87777666655555                               556778888899999999986332           


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                            +..+.|||++|+..|+.+++++|++++.+.
T Consensus       157 ------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~  186 (244)
T 3ui2_A          157 ------TTPKGNPMQFGRRIGLEKVINVLEGQVFEY  186 (244)
T ss_dssp             ------TCCCSSHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             ------ccCCCCHHHHHHHcChHHHHHHHHHhcccc
Confidence                  256889999999999999999999876553

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=1.1e-22  Score=190.64  Aligned_cols=138  Identities=26%  Similarity=0.311  Sum_probs=112.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHH
Q 003425          573 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLL  652 (821)
Q Consensus       573 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v  652 (821)
                      .||||.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.++++                              
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~------------------------------   51 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTE------------------------------   51 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHH------------------------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHH------------------------------
Confidence            466777777777777777777766665 3556666666666655555554                              


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425          653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF  732 (821)
Q Consensus       653 ~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~  732 (821)
                       +|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++....+
T Consensus        52 -~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  130 (153)
T 1awc_B           52 -VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             -HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             -HHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence             5555566778888999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCccccc
Q 003425          733 PHGFQDTADK  742 (821)
Q Consensus       733 ~~~~~~~~~~  742 (821)
                      ..|.++....
T Consensus       131 ~~g~t~l~~A  140 (153)
T 1awc_B          131 KFCKTAFDIS  140 (153)
T ss_dssp             TTSCCHHHHH
T ss_pred             CCCCCHHHHH
Confidence            8888776543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=2.4e-22  Score=188.96  Aligned_cols=151  Identities=25%  Similarity=0.331  Sum_probs=126.7

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~  586 (821)
                      .+..+...++.+.....++. .....+..+..|.||||. |..|+.++++.|++.|++++.+|..|.||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            34445555555555555554 334566678889999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC
Q 003425          587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD  666 (821)
Q Consensus       587 ~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d  666 (821)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++                                ++++.+|
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------------------------------~~~~~~~  130 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--------------------------------SDLHRRD  130 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--------------------------------SCTTCCC
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--------------------------------cCCCCcC
Confidence            99999999999999999999999999998888877777764                                3566777


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          667 YDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       667 ~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ..|.||||+|+..|+.+++++|+++
T Consensus       131 ~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            8888888888888888888888864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=6e-23  Score=198.27  Aligned_cols=137  Identities=17%  Similarity=0.073  Sum_probs=121.2

Q ss_pred             hhHhhhHHHHhhcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCCCCCCCCC
Q 003425          537 AELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY------EEIMTFLIQKGVDINLKDNFGN  606 (821)
Q Consensus       537 ~~~~~~L~~A~~~g~~----~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~  606 (821)
                      ..|.||||.|+..|+.    +++++|+++|+|+|.+|..|+||||+|+..|+      .+++++|+++|+++|.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            7799999999999985    58999999999999999999999999999987      6889999999999999999999


Q ss_pred             -cHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425          607 -TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVAASEGLYLM  684 (821)
Q Consensus       607 -tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~-~g~~~~~~d~~g~T~Lh~A~~~g~~~~  684 (821)
                       ||||+|+..+..+                          .++.+++++|++ +|++++.+|..|.||||+|+..|+.++
T Consensus       116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999998754321                          123467888888 899999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCC
Q 003425          685 AKLLVEAGASVFPKD  699 (821)
Q Consensus       685 v~~Ll~~ga~~~~~d  699 (821)
                      +++|.++..+.+.++
T Consensus       170 v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          170 LKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999998876666655

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=2.4e-22  Score=210.11  Aligned_cols=137  Identities=18%  Similarity=0.080  Sum_probs=82.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CChHHHHHHHhcCCCCCcc--cccchhh
Q 003425          573 RSPLHLAASRGYEEIMTFLIQKGVDINL------KDNFGNTPLLEAIKY---GNDGAASLLVKEGASLNVE--EAGSFLC  641 (821)
Q Consensus       573 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~~~~~--~~~t~l~  641 (821)
                      .++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..  +|.||||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            3445555555555555555555555444      344455555555543   4445555555555444432  2445555


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Q 003425          642 TAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNK  715 (821)
Q Consensus       642 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~  715 (821)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            55555556666666667778888899999999999999999999999999886      478999999988864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.8e-22  Score=202.13  Aligned_cols=141  Identities=23%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      +..|.||||+||..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++                     
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---------------------  128 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ---------------------  128 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTS---------------------
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcC---------------------
Confidence            34556666666666666666666666666666666666666666666555555555443                     


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                               .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.|+..
T Consensus       129 ---------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          129 ---------PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             ---------TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             ---------CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence                     14455666667777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cccCCCCCCcc
Q 003425          729 LLEFPHGFQDT  739 (821)
Q Consensus       729 ~~~~~~~~~~~  739 (821)
                      ...+..++.+.
T Consensus       200 ~~~~~~~~l~~  210 (222)
T 3ehr_A          200 TLSNAEDYLDD  210 (222)
T ss_dssp             -----------
T ss_pred             hccchhhhccc
Confidence            77766665543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=7.2e-22  Score=177.41  Aligned_cols=110  Identities=27%  Similarity=0.234  Sum_probs=72.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCH
Q 003425          570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS  649 (821)
Q Consensus       570 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~  649 (821)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++                       
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----------------------   61 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-----------------------   61 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT-----------------------
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH-----------------------
Confidence            445666666666666666666666666666666666666666666555554444444                       


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 003425          650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR  710 (821)
Q Consensus       650 ~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  710 (821)
                              +|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||+|+|.
T Consensus        62 --------~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           62 --------KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             --------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             --------cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence                    34455666667777777777777777777777777777777777777777774

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=3.5e-22  Score=183.29  Aligned_cols=129  Identities=24%  Similarity=0.318  Sum_probs=109.4

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      ..+..|.||||.||..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          614 KYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                      ..|+.+++++|+++                               |++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        85 ~~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           85 KNGHVDIVKLLLSY-------------------------------GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HTTCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HcCCHHHHHHHHHc-------------------------------CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            88777776666654                               45666777778888888887777777777766543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=4.1e-22  Score=199.58  Aligned_cols=138  Identities=19%  Similarity=0.258  Sum_probs=110.4

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEA  612 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A  612 (821)
                      ..+..|.||||.||..|+.++++.|++.|+++|.+|..|.||||+||..|+.+++++|+++ |++++.+|..|.||||+|
T Consensus        68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            3456788999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          613 IKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       613 ~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      +..|+.+++++|+++                               |++++.+|..|.||||+|+..|+.++++.|++.|
T Consensus       148 ~~~~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          148 AWKGYADIVQLLLAK-------------------------------GARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HHHTCHHHHHHHHHH-------------------------------TCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             HHcCCHHHHHHHHHc-------------------------------CCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            888877777666664                               5567778888999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q 003425          693 ASVFPKDRWG  702 (821)
Q Consensus       693 a~~~~~d~~g  702 (821)
                      ++.+..|..|
T Consensus       197 ~~~~~~~~~~  206 (222)
T 3ehr_A          197 AVRTLSNAED  206 (222)
T ss_dssp             ----------
T ss_pred             hhhhccchhh
Confidence            8887776554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=2e-21  Score=174.55  Aligned_cols=117  Identities=33%  Similarity=0.442  Sum_probs=100.0

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKY  615 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~  615 (821)
                      +..|.||||.|+..|+.++++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHH
Q 003425          616 GNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYL  683 (821)
Q Consensus       616 ~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~  683 (821)
                      |+.+++++|+++                               |++++.+|..|.||||+|+..+..+
T Consensus        84 ~~~~~v~~Ll~~-------------------------------ga~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           84 GHVSCVKLLLSK-------------------------------GADKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             TCHHHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CCHHHHHHHHHc-------------------------------CCCCCCcCCCCCCHHHHhCCHHHHH
Confidence            877776666665                               4566677777888888885444333

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.85  E-value=4.5e-23  Score=199.63  Aligned_cols=127  Identities=27%  Similarity=0.248  Sum_probs=106.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      +..|.||||+|+..|+.++++.|++ |++++.+|..|.||||+|+..|+.+++++|++                      
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----------------------   97 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE----------------------   97 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----------------------
Confidence            4578899999999999999999999 89999999999999988888777666666655                      


Q ss_pred             HHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          649 SDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                               +|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+..+.++..+++
T Consensus        98 ---------~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~  168 (183)
T 3deo_A           98 ---------AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR  168 (183)
T ss_dssp             ---------TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred             ---------cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHH
Confidence                     455667676 7899999999999999999999999999999999999999999997766555555555443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=1.2e-20  Score=194.95  Aligned_cols=190  Identities=17%  Similarity=0.087  Sum_probs=141.0

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~tpL~~A~  613 (821)
                      |..+.+.++.+...|+....+.+...-.+... +-..+....+    ....-..+++... ....+..+....++|+.|+
T Consensus        63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~  138 (278)
T 1dcq_A           63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV  138 (278)
T ss_dssp             SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence            34556778888888887776655432221111 1011111111    1111112232222 1112222223457899999


Q ss_pred             HcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcH
Q 003425          614 KYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLY  682 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~  682 (821)
                      ..|+.+.++.+++.|++++.        ..|.||||.|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            99999999999999988652        3588999999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccc
Q 003425          683 LMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL  729 (821)
Q Consensus       683 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~  729 (821)
                      +++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999998754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2.7e-20  Score=198.76  Aligned_cols=145  Identities=29%  Similarity=0.311  Sum_probs=109.9

Q ss_pred             hHhhhHHHHhhc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 003425          538 ELALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIK  614 (821)
Q Consensus       538 ~~~~~L~~A~~~-g~~~~v~~Ll~~g~~~n~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~  614 (821)
                      .+.|+||.|+.. |+.++++.|++.|+++|..+  ..|.||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            567899999999 99999999999999999988  899999999999999999999999999999999999999999988


Q ss_pred             cCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcC--
Q 003425          615 YGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG--  692 (821)
Q Consensus       615 ~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g--  692 (821)
                      .|+.+++++|++                               +|++++..|..|.||||+|+..|+.+++++|+.++  
T Consensus       278 ~g~~~~v~~LL~-------------------------------~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          278 LGHTGLACLFLK-------------------------------RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             cCcHHHHHHHHH-------------------------------CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            877766666655                               45567778888889999999999999999888775  


Q ss_pred             -CCCCCCCCCCCCHHHHHHHcC
Q 003425          693 -ASVFPKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       693 -a~~~~~d~~g~t~l~~A~~~~  713 (821)
                       ++....+..+.|+++++....
T Consensus       327 ~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          327 EAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             ----------------------
T ss_pred             cccccccCCCCCCHHHHHHHHH
Confidence             334455667788887766544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=5.3e-20  Score=155.93  Aligned_cols=93  Identities=39%  Similarity=0.523  Sum_probs=86.2

Q ss_pred             cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 003425          635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~  714 (821)
                      +|.||||.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36788888888888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccc
Q 003425          715 KNLIKLLEDAKST  727 (821)
Q Consensus       715 ~~i~~~Ll~~~a~  727 (821)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=1.4e-19  Score=186.97  Aligned_cols=131  Identities=21%  Similarity=0.197  Sum_probs=107.5

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCC------CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCC
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKDNF  604 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n------~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~  604 (821)
                      .......++|+.|+..|+.+.++.+++.|++++      ..|..|.||||+|+..   |+.+++++|+++|+++|.+|..
T Consensus       125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~  204 (278)
T 1dcq_A          125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK  204 (278)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred             cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence            344556678889999999999988888888844      4477888899988888   8888888888888888888888


Q ss_pred             CCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHH
Q 003425          605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLM  684 (821)
Q Consensus       605 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~  684 (821)
                      |.||||+|+..|+.+++++|++                               +|++++.+|..|.||||+|+..|+.++
T Consensus       205 g~TpLh~A~~~g~~~~v~~Ll~-------------------------------~gad~~~~d~~g~tpL~~A~~~~~~~~  253 (278)
T 1dcq_A          205 GSTALHYCCLTDNAECLKLLLR-------------------------------GKASIEIANESGETPLDIAKRLKHEHC  253 (278)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-------------------------------cCCCCCCccCCCCCHHHHHHHcCCHHH
Confidence            8888888887777666655555                               566778888999999999999999999


Q ss_pred             HHHHHHcCCCC
Q 003425          685 AKLLVEAGASV  695 (821)
Q Consensus       685 v~~Ll~~ga~~  695 (821)
                      +++|+++|++.
T Consensus       254 v~~Ll~~ga~~  264 (278)
T 1dcq_A          254 EELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999998853

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=6.7e-20  Score=191.56  Aligned_cols=126  Identities=25%  Similarity=0.146  Sum_probs=118.6

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhc---CCHHHHHHHHHCCCCCCCCCCCCC
Q 003425          602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVAR---GDSDLLKRVLSNGIDPNTRDYDLR  670 (821)
Q Consensus       602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~---~~~~~v~~Ll~~g~~~~~~d~~g~  670 (821)
                      ...+.++|+.|+..|+.+.++.|++.|++++.        ..|.||||+|+..   |+.+++++|+++|+++|.+|..|+
T Consensus       148 ~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          148 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             cCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            33456889999999999999999999999875        3588999999997   899999999999999999999999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       671 T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      ||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999987

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.81  E-value=7.1e-20  Score=172.82  Aligned_cols=143  Identities=24%  Similarity=0.397  Sum_probs=126.8

Q ss_pred             HHHHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEee
Q 003425          365 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI  444 (821)
Q Consensus       365 ~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~  444 (821)
                      .+++++.||++||.++..+++.++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++. 
T Consensus         5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-   83 (160)
T 4f8a_A            5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-   83 (160)
T ss_dssp             ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred             hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             ccCCccceEEEeCCCCcccccccccc--CCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425          445 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (821)
Q Consensus       445 ~~~g~~~~i~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l  512 (821)
                          .+..+..+.+|++||+.+++.+  .+++++++|.++|+++.|++++|.++++++|++...+++.+.
T Consensus        84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~  149 (160)
T 4f8a_A           84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI  149 (160)
T ss_dssp             ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3457889999999999999988  799999999999999999999999999999999999888763

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=7.9e-20  Score=154.87  Aligned_cols=93  Identities=40%  Similarity=0.563  Sum_probs=87.6

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      +|.||||.|+..|+.+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCC
Q 003425          618 DGAASLLVKEGAS  630 (821)
Q Consensus       618 ~~~v~~Ll~~~~~  630 (821)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=2.3e-19  Score=191.54  Aligned_cols=126  Identities=27%  Similarity=0.290  Sum_probs=98.3

Q ss_pred             CCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          572 GRSPLHLAASR-GYEEIMTFLIQKGVDINLKD--NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       572 g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      +.|+||.|+.. |+.++++.|+++|+++|..+  ..|.||||+|+.                               .|+
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~-------------------------------~g~  247 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATA-------------------------------ANS  247 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHH-------------------------------TTC
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHH-------------------------------CCC
Confidence            44566666665 66666666666666665555  455555555554                               455


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccc
Q 003425          649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQ  728 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~  728 (821)
                      .+++++|+++|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++++...
T Consensus       248 ~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~  327 (368)
T 3jue_A          248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMRE  327 (368)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            55566666677788999999999999999999999999999999999999999999999999999999999999988543

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.79  E-value=4.4e-19  Score=162.03  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYL  230 (821)
Q Consensus       151 ~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~h~~ac~~~~i  230 (821)
                      +-++|+++++|+            +|.+|++|++|++ +.|....+      ...  .+...++.+++++.++++++|++
T Consensus        15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~~~~l------~~~--~~~~~~~~~~~~i~~~a~~~~~~   73 (155)
T 2a9h_A           15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRHGSAL------HWR--AAGAATVLLVIVLLAGSYLAVLA   73 (155)
T ss_dssp             --------------------------------------------CC------HHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHHHHHH------HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999996            3445555555554 33331111      111  12223333444455677777777


Q ss_pred             HccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHH
Q 003425          231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL  310 (821)
Q Consensus       231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~  310 (821)
                      +...+.+                        .+.+|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++
T Consensus        74 E~~~~~~------------------------~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~  129 (155)
T 2a9h_A           74 ERGAPGA------------------------ALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV  129 (155)
T ss_dssp             HTTSSCS------------------------STTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCC------------------------ccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            6432111                        1236999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 003425          311 IGNMTALIVKG  321 (821)
Q Consensus       311 i~~i~~~~~~~  321 (821)
                      ++.+++.+.+.
T Consensus       130 ~~~i~~~~~~~  140 (155)
T 2a9h_A          130 FAAVATWFVGR  140 (155)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999988873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=3.9e-19  Score=180.35  Aligned_cols=142  Identities=27%  Similarity=0.239  Sum_probs=113.3

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      .+.+++..++..|+.+.+..+...+.++   +..|.||||+|+..|+.+++++|++ |+++|.+|..|.||||+|+..|+
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~   89 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGS   89 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSCHHH---HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTC
T ss_pred             CCccHHHHHHHcCCCccccccccccccc---ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCC
Confidence            3445555566666665554444433333   2568899999999999999999999 89999999999999998888777


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLMAKLLVEAGASVF  696 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~  696 (821)
                      .+++++|+++                               |+++|.+| ..|.||||+|+..|+.+++++|+++|++++
T Consensus        90 ~~~v~~Ll~~-------------------------------ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~  138 (244)
T 3ui2_A           90 DKCVRLLAEA-------------------------------GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE  138 (244)
T ss_dssp             HHHHHHHHHT-------------------------------TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHc-------------------------------CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            7666666554                               55667676 779999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHcCC
Q 003425          697 PKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       697 ~~d~~g~t~l~~A~~~~~  714 (821)
                      .+|..|+||||+|+..++
T Consensus       139 ~~d~~g~t~l~~A~~~~~  156 (244)
T 3ui2_A          139 VEDERGLTALELAREILK  156 (244)
T ss_dssp             CCCTTCCCHHHHHHHHHT
T ss_pred             CCCCCCCcHHHHHHHHHh
Confidence            999999999999997543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=7.2e-19  Score=155.61  Aligned_cols=106  Identities=38%  Similarity=0.490  Sum_probs=55.2

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCC
Q 003425          569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGD  648 (821)
Q Consensus       569 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~  648 (821)
                      |.+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+                       
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll-----------------------   62 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-----------------------   62 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-----------------------
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-----------------------
Confidence            444555555555555555555555555555555444444444444444433333333                       


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCH
Q 003425          649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTP  705 (821)
Q Consensus       649 ~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  705 (821)
                              ++|++++.+|..|.||||+|+..|+.+++++|+++|+++|.++..|.||
T Consensus        63 --------~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           63 --------AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             --------TTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             --------HcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence                    3334455555556666666666666666666666666666666666555

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.76  E-value=2.7e-18  Score=158.29  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=115.4

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce---EEEeCCCCcc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF  462 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~---i~~l~~G~~f  462 (821)
                      .++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++...++|++.+   +..+.+|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            5688999999999999999999999999999999999999999999999999999999888998888   9999999999


Q ss_pred             ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      |+.+++.+.+++++++|.++|+++.|++++|.++++.+|.+...+++.+..
T Consensus        85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~  135 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA  135 (142)
T ss_dssp             CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988887764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.75  E-value=1.3e-18  Score=154.04  Aligned_cols=106  Identities=30%  Similarity=0.413  Sum_probs=92.6

Q ss_pred             ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q 003425          634 EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCG  713 (821)
Q Consensus       634 ~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~  713 (821)
                      .+|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence            34566666666667777777777778888999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhccccccccCCCCCCcc
Q 003425          714 NKNLIKLLEDAKSTQLLEFPHGFQDT  739 (821)
Q Consensus       714 ~~~i~~~Ll~~~a~~~~~~~~~~~~~  739 (821)
                      +.+++++|+++|++++..+..+.++.
T Consensus        87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999988877653

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.74  E-value=1.1e-17  Score=155.69  Aligned_cols=128  Identities=19%  Similarity=0.299  Sum_probs=122.5

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+.+|++..+..+.+|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            56889999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++.+.+++++++|.++|+++.|++++|.++++++|++...++..+..
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~  131 (149)
T 2pqq_A           84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR  131 (149)
T ss_dssp             GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877664

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.74  E-value=5.4e-18  Score=164.07  Aligned_cols=149  Identities=17%  Similarity=0.182  Sum_probs=132.1

Q ss_pred             HHHHHhhCcHHH----HHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEE
Q 003425          365 EASVLQDIPISI----RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE  440 (821)
Q Consensus       365 ~~~~l~~lp~~L----~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~  440 (821)
                      +..+.+.++|+|    +.+.......++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+
T Consensus        13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~   92 (187)
T 3gyd_A           13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN   92 (187)
T ss_dssp             HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred             cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence            444455554443    2334445567889999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       441 ~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++...++|++.++..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+..
T Consensus        93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  165 (187)
T 3gyd_A           93 VIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ  165 (187)
T ss_dssp             EEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888855443

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.74  E-value=3.8e-18  Score=161.01  Aligned_cols=127  Identities=22%  Similarity=0.361  Sum_probs=118.5

Q ss_pred             HhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425          382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (821)
Q Consensus       382 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~  461 (821)
                      .....++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++..+..+.+|++
T Consensus        33 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~  111 (161)
T 3idb_B           33 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS  111 (161)
T ss_dssp             HHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCE
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCE
Confidence            34456789999999999999999999999999999999999999999999999999999998 88899999999999999


Q ss_pred             cccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHH
Q 003425          462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (821)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~  509 (821)
                      ||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+.++.
T Consensus       112 fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~  159 (161)
T 3idb_B          112 FGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE  159 (161)
T ss_dssp             ECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred             echHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence            999999999999999999999999999999999999999988766544

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.74  E-value=3.8e-18  Score=156.66  Aligned_cols=132  Identities=23%  Similarity=0.258  Sum_probs=117.0

Q ss_pred             hCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCcc
Q 003425          371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE  450 (821)
Q Consensus       371 ~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~  450 (821)
                      ++|+.+|.+.......++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++.   +|  
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g--   81 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EG--   81 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TT--
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CC--
Confidence            5788888888888889999999999999999999999999999999999999999999999999999999965   44  


Q ss_pred             ceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          451 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       451 ~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      ..+..+.+|++||+.+++.+.+++++++|.++|+++.|++++|.++++++|...+..
T Consensus        82 ~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~~  138 (139)
T 3ocp_A           82 VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTE  138 (139)
T ss_dssp             EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--------
T ss_pred             EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhhc
Confidence            378899999999999999999999999999999999999999999999999887653

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.72  E-value=2.4e-17  Score=154.18  Aligned_cols=128  Identities=14%  Similarity=0.228  Sum_probs=117.6

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.++..+.+|++||+.
T Consensus        11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   90 (154)
T 2z69_A           11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   90 (154)
T ss_dssp             HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred             HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence            46788999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             cccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       466 ~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++.+.+ +.++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus        91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~  139 (154)
T 2z69_A           91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST  139 (154)
T ss_dssp             GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999998 99999999999999999999999999999999999887765

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.70  E-value=5.9e-17  Score=158.07  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=121.2

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      +..++++++.|.+++++.+..+...++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++.++.++.+|++|||
T Consensus         5 ~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge   84 (194)
T 3dn7_A            5 HTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSD   84 (194)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEee
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          465 V-SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       465 ~-~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      . +++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  134 (194)
T 3dn7_A           85 YMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK  134 (194)
T ss_dssp             HHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             hHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            8 688999999999999999999999999999999999999887766654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=6.7e-17  Score=141.43  Aligned_cols=95  Identities=34%  Similarity=0.484  Sum_probs=86.1

Q ss_pred             ccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       530 ~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      ......+.+|.|+||.||..|+.++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHH
Q 003425          610 LEAIKYGNDGAASLL  624 (821)
Q Consensus       610 ~~A~~~~~~~~v~~L  624 (821)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999986

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.70  E-value=7.5e-17  Score=141.78  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      +|.+|+||+++|+|||||||++|.|+.+++++++++++|+.++++++|.+++.+.+
T Consensus        61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~  116 (122)
T 2ih3_C           61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG  116 (122)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999998855

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.68  E-value=1.4e-16  Score=158.30  Aligned_cols=126  Identities=21%  Similarity=0.344  Sum_probs=118.4

Q ss_pred             ccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccc
Q 003425          389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL  468 (821)
Q Consensus       389 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~  468 (821)
                      ++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            46789999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             ccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      .+.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  126 (216)
T 4ev0_A           81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR  126 (216)
T ss_dssp             HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888777653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=1.3e-16  Score=139.65  Aligned_cols=87  Identities=37%  Similarity=0.577  Sum_probs=81.8

Q ss_pred             cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Q 003425          635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGN  714 (821)
Q Consensus       635 ~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~  714 (821)
                      +|.|+||.|+..|+.+++++|+++|++++.+|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            57788888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 003425          715 KNLIKLL  721 (821)
Q Consensus       715 ~~i~~~L  721 (821)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.67  E-value=1.2e-16  Score=146.22  Aligned_cols=119  Identities=18%  Similarity=0.346  Sum_probs=109.2

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEE--EeCCCCccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFG  463 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~--~l~~G~~fG  463 (821)
                      .++++++|+|..++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|++. ..++|++.++.  .+.+|++||
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG   83 (137)
T 1wgp_A            5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG   83 (137)
T ss_dssp             SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred             HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence            467899999999999999999999999999999999999999999999999999965 56788887766  999999999


Q ss_pred             cccc---cccCC------cceEEEEecceEEEEechHhHHHHHHHhhhchH
Q 003425          464 EVSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR  505 (821)
Q Consensus       464 e~~~---~~~~~------~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~  505 (821)
                      |.++   +.+.+      ++++++|.++|+++.|++++|.++++++|++..
T Consensus        84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~  134 (137)
T 1wgp_A           84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP  134 (137)
T ss_dssp             THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence            9995   77775      579999999999999999999999999998764

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.67  E-value=4.5e-18  Score=176.00  Aligned_cols=213  Identities=15%  Similarity=0.172  Sum_probs=136.8

Q ss_pred             cccCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeee--ecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCce
Q 003425           57 FRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTY  134 (821)
Q Consensus        57 ~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~  134 (821)
                      +|.+.+..+.+      ..++.+++++++.+++.+.+...-  .......+..+|.++.++|++|+++++..        
T Consensus        19 ~r~~~~~i~~~------~~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~--------   84 (285)
T 3rvy_A           19 MYLRITNIVES------SFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYV--------   84 (285)
T ss_dssp             CHHHHHHHHTS------HHHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred             HHHHHHHHHcC------HHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            44455554433      356777777777776665544311  11222346789999999999999997633        


Q ss_pred             EEeeccHHHHHHHhhh-hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHH
Q 003425          135 RLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKL  212 (821)
Q Consensus       135 ~~v~~~~~I~~~Ylk~-~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~  212 (821)
                          .+    ++|+++ |.++|+++++|..+.  ....   ++.+|++|++|++|+.+....++.... +......+..+
T Consensus        85 ----~~----~~y~~~~wn~~Dl~~v~~~~i~--~~~~---~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~  151 (285)
T 3rvy_A           85 ----HR----ISFFKDPWSLFDFFVVAISLVP--TSSG---FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSV  151 (285)
T ss_dssp             ----TG----GGGGGCHHHHHHHHHHHHHHSC--SSSS---CTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHH
T ss_pred             ----Hh----HHHHcCChHHhHHHHHHHHHHc--ccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                33    579988 679999999886432  1222   344555555555555554444433222 12233334555


Q ss_pred             HHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccC-ccc-cCCh
Q 003425          213 IAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNL  290 (821)
Q Consensus       213 ~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyG-di~-p~t~  290 (821)
                      ++.++++.-++|++-+.+.....                        .+.|.++..|+||+++|+||+||| |+. |.+.
T Consensus       152 ~~~~~~~~~~fa~~g~~~f~~~~------------------------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~  207 (285)
T 3rvy_A          152 IALMTLFFYIFAIMATQLFGERF------------------------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLME  207 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC------------------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhCccc------------------------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            55555555566655444432100                        122567999999999999999999 986 7766


Q ss_pred             hH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          291 RE----MVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       291 ~e----~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .+    ..+++++++.|+++.++++|.+.+.+..
T Consensus       208 ~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~  241 (285)
T 3rvy_A          208 VYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI  241 (285)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44    7889999999999999999999988866

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.67  E-value=1.8e-16  Score=159.43  Aligned_cols=129  Identities=18%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            46788999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus        85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  133 (231)
T 3e97_A           85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARR  133 (231)
T ss_dssp             TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988877653

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.67  E-value=1.7e-16  Score=160.34  Aligned_cols=130  Identities=16%  Similarity=0.229  Sum_probs=123.8

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~   88 (237)
T 3fx3_A            9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE   88 (237)
T ss_dssp             HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred             HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence            45788999999999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      .+++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        89 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  138 (237)
T 3fx3_A           89 AVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH  138 (237)
T ss_dssp             HHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888777653

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.66  E-value=2e-16  Score=142.09  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhCCC
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL  343 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l  343 (821)
                      .|++|+||+++|||||||||++|.|+.|++++++++++|+++++++++.+++.+......++.+++.+...+. .+..++
T Consensus        43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (137)
T 4h33_A           43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL  122 (137)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred             CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            4899999999999999999999999999999999999999999999999999887644333333333333333 333455


Q ss_pred             CHHHHHHHHHHHH
Q 003425          344 GRDIRDQIIGHLR  356 (821)
Q Consensus       344 p~~l~~ri~~y~~  356 (821)
                      +++.+..++++++
T Consensus       123 ~~~~i~~l~~~l~  135 (137)
T 4h33_A          123 TKEEIAVVEQFLT  135 (137)
T ss_dssp             -------------
T ss_pred             cHHHHHHHHHHHh
Confidence            6666666665553

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.66  E-value=4.5e-16  Score=155.19  Aligned_cols=127  Identities=15%  Similarity=0.118  Sum_probs=120.3

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc--ccc
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE  464 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~--fGe  464 (821)
                      ++++++|+|.+++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999  899


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      .+++.+.|++++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~  131 (220)
T 3dv8_A           83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT  131 (220)
T ss_dssp             GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988776655

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.66  E-value=3.6e-16  Score=157.11  Aligned_cols=130  Identities=17%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             hhhhccccccccCCCHHHHHHHHHh--cccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~--~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ...++.++|+|.+++++.+..++..  ++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++|
T Consensus        16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f   95 (232)
T 1zyb_A           16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   95 (232)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence            4577899999999999999999998  99999999999999999999999999999999998899999999999999999


Q ss_pred             ccccccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       463 Ge~~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      |+.+++.+.+ ++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus        96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  148 (232)
T 1zyb_A           96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR  148 (232)
T ss_dssp             CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred             eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            9999999988 999999999999999999999999999999999988776653

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.66  E-value=1.2e-16  Score=160.28  Aligned_cols=128  Identities=20%  Similarity=0.327  Sum_probs=122.3

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            45788999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus        85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  132 (227)
T 3d0s_A           85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR  132 (227)
T ss_dssp             HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877665

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.66  E-value=2.6e-16  Score=144.14  Aligned_cols=123  Identities=22%  Similarity=0.312  Sum_probs=114.0

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++...    +   ..+.+|++||+
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~---~~~~~G~~~G~   81 (138)
T 1vp6_A            9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P---VELGPGAFFGE   81 (138)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C---EEECTTCEECH
T ss_pred             HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c---ceECCCCEeee
Confidence            3467899999999999999999999999999999999999999999999999999998632    2   46899999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      .+++.+.+++++++|.++|+++.|++++|.++++++|++...+++.+..+
T Consensus        82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r  131 (138)
T 1vp6_A           82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (138)
T ss_dssp             HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998877764

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.65  E-value=5.4e-16  Score=144.91  Aligned_cols=118  Identities=24%  Similarity=0.368  Sum_probs=108.2

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++++|.+++++.+..++..++...|++|++|+++|+.++.+|||.+|.|+++.   +|.  .+..+.+|++||+
T Consensus        36 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fGe  110 (154)
T 3pna_A           36 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFGE  110 (154)
T ss_dssp             HHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEECC
T ss_pred             HHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEeee
Confidence            45688899999999999999999999999999999999999999999999999999987   343  6788999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      .+++.+.+++++++|.++|+++.|++++|.++++++|...+.+
T Consensus       111 ~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~~  153 (154)
T 3pna_A          111 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM  153 (154)
T ss_dssp             HHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC---
T ss_pred             hHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhhc
Confidence            9999999999999999999999999999999999999876654

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.64  E-value=2.1e-16  Score=158.47  Aligned_cols=129  Identities=14%  Similarity=0.221  Sum_probs=122.9

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+++|++||+
T Consensus         7 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~   86 (227)
T 3dkw_A            7 HQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAE   86 (227)
T ss_dssp             SHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESC
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeee
Confidence            34678999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             ccccccCC-cceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          465 VSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       465 ~~~~~~~~-~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      .+++.+.| ++++++|.++|+++.|++++|.++++.+|.+...++..+..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  136 (227)
T 3dkw_A           87 AMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST  136 (227)
T ss_dssp             TTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999 99999999999999999999999999999999988877765

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.63  E-value=7.9e-16  Score=154.76  Aligned_cols=125  Identities=13%  Similarity=0.130  Sum_probs=114.6

Q ss_pred             cccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccc
Q 003425          390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC  469 (821)
Q Consensus       390 ~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~  469 (821)
                      .++|+|.+++++.+..++..++.+.|+||++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.
T Consensus        13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~   92 (232)
T 2gau_A           13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA   92 (232)
T ss_dssp             GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred             cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence            36799999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             cCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +.|++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  137 (232)
T 2gau_A           93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  137 (232)
T ss_dssp             TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988877653

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.63  E-value=1.5e-15  Score=152.45  Aligned_cols=128  Identities=13%  Similarity=0.198  Sum_probs=110.7

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      ...+++.++|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC-CcceEEEEecceEEEEechHhHHHHHHHh-----hhchHHHHHHHhc
Q 003425          466 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQ  513 (821)
Q Consensus       466 ~~~~~~-~~~~~~~a~~~~~~~~i~~~~f~~~l~~~-----p~~~~~~l~~~l~  513 (821)
                      +++.+. |++++++|.++|+++.|++++|.++++++     |++...++..+..
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~  143 (230)
T 3iwz_A           90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK  143 (230)
T ss_dssp             GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence            998875 79999999999999999999999999999     9998888877665

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.63  E-value=1.8e-15  Score=138.49  Aligned_cols=112  Identities=20%  Similarity=0.277  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccccC
Q 003425          209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV  288 (821)
Q Consensus       209 ~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p~  288 (821)
                      .+..++.++++.+++++++|....       +  |                     .|.+|+||+++|+|||||||++|.
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~~e-------~--~---------------------~~~~a~y~~~~t~tTvGyGd~~p~   75 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYSTVE-------G--L---------------------RPLDALYFSVVTLTTVGDGNFSPQ   75 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS-------C--C---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------C--C---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence            344556666667777877776431       1  2                     488999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHH------Hhc-----CchhHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 003425          289 NLREMVFIMIYVSFDMILGAYLIGNMTAL------IVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ  350 (821)
Q Consensus       289 t~~e~~~~~~~~i~g~~~~a~~i~~i~~~------~~~-----~~~~~~~~~~~~~~~~~m~~~~lp~~l~~r  350 (821)
                      |..+++++++++++|+.++++.++.++..      ...     .....+..+++++++++++.++.|++|+.|
T Consensus        76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R  148 (148)
T 3vou_A           76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR  148 (148)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence            99999999999999999999999998762      211     122334567788999999999999999875

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.62  E-value=1.5e-15  Score=161.85  Aligned_cols=128  Identities=17%  Similarity=0.297  Sum_probs=120.7

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++|+|++++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+.+|++ ++..+.+|++|||
T Consensus        11 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe   89 (333)
T 4ava_A           11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGE   89 (333)
T ss_dssp             CHHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESH
T ss_pred             hHHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeH
Confidence            346789999999999999999999999999999999999999999999999999999998888887 8899999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      .+++.+.|++++++|.++|+++.|++++|.+++ ++|.+...+++.+...
T Consensus        90 ~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~  138 (333)
T 4ava_A           90 IALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR  138 (333)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 9999999988777653

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.62  E-value=1.2e-15  Score=159.76  Aligned_cols=142  Identities=23%  Similarity=0.243  Sum_probs=128.1

Q ss_pred             HHHhhCcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeecc
Q 003425          367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE  446 (821)
Q Consensus       367 ~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~  446 (821)
                      ....++|+..|.+...+...++++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|||.+|.|+++.   
T Consensus        19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---   95 (299)
T 3shr_A           19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---   95 (299)
T ss_dssp             ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999965   


Q ss_pred             CCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       447 ~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +|  ..+..+.+|++|||.+++.+.|++++++|.++|+++.|++++|.+++..+|.........++.
T Consensus        96 ~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~  160 (299)
T 3shr_A           96 EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLK  160 (299)
T ss_dssp             TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHh
Confidence            34  468899999999999999999999999999999999999999999999999776665555544

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-16  Score=144.52  Aligned_cols=125  Identities=18%  Similarity=0.258  Sum_probs=109.2

Q ss_pred             HHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhccccccc-ccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce
Q 003425          374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (821)
Q Consensus       374 ~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~-~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~  452 (821)
                      |+.|.+.......++++++++|..++++.+..++..++.+.|. +|++|+++|+.++.+|||.+|.|+++.  .+|++  
T Consensus         3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~--   78 (134)
T 2d93_A            3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV--   78 (134)
T ss_dssp             CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE--
T ss_pred             hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE--
Confidence            3334444444455678899999999999999999999999999 999999999999999999999999985  55654  


Q ss_pred             EEEeCCCCccccccccccCCcceEE-EEecceEEEEechHhHHHHHHHhhhc
Q 003425          453 VSYLHPNSSFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFCD  503 (821)
Q Consensus       453 i~~l~~G~~fGe~~~~~~~~~~~~~-~a~~~~~~~~i~~~~f~~~l~~~p~~  503 (821)
                       ..+.+|++||+.+++.+.++.+++ +|.++|+++.|++++|.++++.++..
T Consensus        79 -~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~  129 (134)
T 2d93_A           79 -ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKS  129 (134)
T ss_dssp             -EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSS
T ss_pred             -EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHhc
Confidence             558999999999999999999999 99999999999999999999877654

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.60  E-value=1.5e-15  Score=159.15  Aligned_cols=130  Identities=22%  Similarity=0.334  Sum_probs=123.1

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeec-cCCccceEEEeCCCCccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSSFG  463 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~-~~g~~~~i~~l~~G~~fG  463 (821)
                      ...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++... .+|++..+..+++|++||
T Consensus       155 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fG  234 (299)
T 3shr_A          155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFG  234 (299)
T ss_dssp             HHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEEC
T ss_pred             HHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeC
Confidence            4567888999999999999999999999999999999999999999999999999999876 688888999999999999


Q ss_pred             cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      |.+++.+.|++++++|.++|+++.|++++|.++++.+|++...+++.+..+
T Consensus       235 e~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r  285 (299)
T 3shr_A          235 EKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK  285 (299)
T ss_dssp             GGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             hHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999887764

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.60  E-value=4.4e-15  Score=134.59  Aligned_cols=89  Identities=17%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (821)
Q Consensus       208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p  287 (821)
                      .++..++.++++.++.+++++.++...+.   +..                     ..|.+|+||+++|+|||||||++|
T Consensus         7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~---~~~---------------------~~~~~a~yf~~~T~tTvGyGd~~P   62 (139)
T 3eff_K            7 AAGAATVLLVIVLLAGSYLAVLAERGAPG---AQL---------------------ITYPRALWWSVETATTVGYGDLYP   62 (139)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTSSCTT---CCC---------------------CCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccc---------------------CCHHHHHHHHheeeecccCCCCcC
Confidence            45556666677777788888877643211   111                     158999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       288 ~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|+.+++++++++++|+++++++++.+++.+.+
T Consensus        63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~   95 (139)
T 3eff_K           63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG   95 (139)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887754

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.59  E-value=4.5e-15  Score=146.72  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=111.4

Q ss_pred             ccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-
Q 003425          393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-  471 (821)
Q Consensus       393 ~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~-  471 (821)
                      ++++.++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.++++..+++|++.++..+.+|++||+.+++.+. 
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~   81 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ   81 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence            4677899999999999999999999999999999999999999999999998899999999999999999999999887 


Q ss_pred             CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       472 ~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      |++++++|.++|+++.|++++|.++++.+|++...+++.+..
T Consensus        82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  123 (210)
T 3ryp_A           82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  123 (210)
T ss_dssp             BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence            899999999999999999999999999999999988877665

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.58  E-value=8.9e-15  Score=144.18  Aligned_cols=116  Identities=15%  Similarity=0.265  Sum_probs=108.7

Q ss_pred             CCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC----Cc
Q 003425          398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ  473 (821)
Q Consensus       398 ~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~----~~  473 (821)
                      ++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+.    |+
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~   80 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER   80 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence            58899999999999999999999999999999999999999999998899999999999999999999999888    89


Q ss_pred             ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++++|.++|+++.|++++|.++++++|.+...++..+..
T Consensus        81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  120 (207)
T 2oz6_A           81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD  120 (207)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877664

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.56  E-value=1.6e-14  Score=150.62  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=116.3

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCC-ccceEEEeCCCCccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFG  463 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~i~~l~~G~~fG  463 (821)
                      ...++.++++|..+++..+..++..++...|.+|++|+++|+.++.+|+|.+|.|+++....+| ++..+..+++|++||
T Consensus       155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG  234 (291)
T 2qcs_B          155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG  234 (291)
T ss_dssp             HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred             HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence            3456778899999999999999999999999999999999999999999999999999766655 457899999999999


Q ss_pred             cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (821)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l  512 (821)
                      |.+++.+.|++++++|.++|+++.|++++|.+++..+|++....++...
T Consensus       235 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~  283 (291)
T 2qcs_B          235 EIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN  283 (291)
T ss_dssp             SGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred             HHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998776665543

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.56  E-value=4.2e-15  Score=162.19  Aligned_cols=124  Identities=23%  Similarity=0.366  Sum_probs=116.3

Q ss_pred             HhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425          382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (821)
Q Consensus       382 ~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~  461 (821)
                      .....+.++++++|++++++.+..|+..++.+.|++|++|+++|+.++.+|+|.+|.|+++. ..+|++..+..+.+|++
T Consensus       140 ~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~  218 (416)
T 3tnp_B          140 RNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGS  218 (416)
T ss_dssp             HHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCE
T ss_pred             HHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCE
Confidence            44556789999999999999999999999999999999999999999999999999999998 77888999999999999


Q ss_pred             cccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHH
Q 003425          462 FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (821)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~  506 (821)
                      |||.+++.+.|+.++++|.++|+++.|++++|.+++..+|.....
T Consensus       219 fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~  263 (416)
T 3tnp_B          219 FGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRK  263 (416)
T ss_dssp             ECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSS
T ss_pred             EeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHH
Confidence            999999999999999999999999999999999999999876543

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.54  E-value=8.4e-15  Score=144.97  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             cccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC
Q 003425          392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI  471 (821)
Q Consensus       392 ~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~  471 (821)
                      -|.|...++.....+...++.+.|++|++|+.+|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+.
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~   83 (213)
T 1o5l_A            4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE   83 (213)
T ss_dssp             ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred             cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence            47888889999999999999999999999999999999999999999999998899999999999999999999988876


Q ss_pred             -CcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       472 -~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                       ++.++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  127 (213)
T 1o5l_A           84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH  127 (213)
T ss_dssp             CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999888877653

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.54  E-value=2.1e-14  Score=146.80  Aligned_cols=119  Identities=16%  Similarity=0.263  Sum_probs=109.4

Q ss_pred             ccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccC-Cc
Q 003425          395 FKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQ  473 (821)
Q Consensus       395 f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~-~~  473 (821)
                      ...++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+.+++.+. ++
T Consensus        54 ~~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~  133 (260)
T 3kcc_A           54 GKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER  133 (260)
T ss_dssp             -----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBC
T ss_pred             cCCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCC
Confidence            35689999999999999999999999999999999999999999999998899999999999999999999999888 89


Q ss_pred             ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus       134 ~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~  173 (260)
T 3kcc_A          134 SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  173 (260)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877665

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.53  E-value=8.4e-15  Score=145.87  Aligned_cols=121  Identities=14%  Similarity=0.142  Sum_probs=113.9

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      ..+++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|||.+|.|+++ ..++|++.++..+.+|++||+ 
T Consensus         3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-   80 (220)
T 2fmy_A            3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-   80 (220)
T ss_dssp             TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred             hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence            467899999999999999999999999999999999999999999999999999995 788899999999999999998 


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                            |++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~  123 (220)
T 2fmy_A           81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDL  123 (220)
T ss_dssp             ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence                  8899999999999999999999999999999999888876653

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.53  E-value=1.6e-14  Score=157.54  Aligned_cols=130  Identities=17%  Similarity=0.310  Sum_probs=112.9

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC------CccceEEEe
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYL  456 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~------g~~~~i~~l  456 (821)
                      ..+..+++++++|..++++.+..++..++.+.|.+|++|+++|+.++.+|||.+|.|+++....+      |++..+..+
T Consensus       263 ~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l  342 (416)
T 3tnp_B          263 KMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARC  342 (416)
T ss_dssp             SSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEE
T ss_pred             HHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEe
Confidence            35667889999999999999999999999999999999999999999999999999999987665      888899999


Q ss_pred             CCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425          457 HPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (821)
Q Consensus       457 ~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l  512 (821)
                      ++|++|||.+++.+.|++++++|.++|+++.|++++|.+++..+|++.+..+..+.
T Consensus       343 ~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~  398 (416)
T 3tnp_B          343 FRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYE  398 (416)
T ss_dssp             CTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-----
T ss_pred             CCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987666554443

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.53  E-value=3.7e-14  Score=147.86  Aligned_cols=127  Identities=23%  Similarity=0.364  Sum_probs=117.1

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ....++++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.   +|  ..+..+.+|++|
T Consensus        35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~f  109 (291)
T 2qcs_B           35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF  109 (291)
T ss_dssp             HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEE
T ss_pred             HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCcc
Confidence            3456788999999999999999999999999999999999999999999999999999987   44  468899999999


Q ss_pred             ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      ||.+++.+.|++++++|.++|+++.|++++|.+++..+|.....++..++..
T Consensus       110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (291)
T 2qcs_B          110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK  161 (291)
T ss_dssp             CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988877766653

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.53  E-value=1.2e-14  Score=162.67  Aligned_cols=142  Identities=20%  Similarity=0.224  Sum_probs=130.1

Q ss_pred             CcHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCc--
Q 003425          372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT--  449 (821)
Q Consensus       372 lp~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~--  449 (821)
                      .|+..|.+.......+.++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++....+|+  
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~  106 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD  106 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence            466777777777778899999999999999999999999999999999999999999999999999999998888885  


Q ss_pred             cceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       450 ~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +..+..+.+|++||+.+ +.+.|++++++|.++|+++.|++++|.++++.+|.+...++..+..+
T Consensus       107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~  170 (469)
T 1o7f_A          107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGV  170 (469)
T ss_dssp             CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSC
T ss_pred             ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            47899999999999999 99999999999999999999999999999999999888876655543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=156.00  Aligned_cols=127  Identities=20%  Similarity=0.269  Sum_probs=115.9

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCc-cceEEEeCCCCccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSFG  463 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~-~~~i~~l~~G~~fG  463 (821)
                      +..+++++++|..+++..+..++..++...|.+|++|+++|+.++.+|||.+|.|+++....+|+ +..+..+++|++||
T Consensus       246 ~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fG  325 (381)
T 4din_B          246 YEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFG  325 (381)
T ss_dssp             HHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEEC
T ss_pred             HHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEec
Confidence            44677889999999999999999999999999999999999999999999999999998766554 56689999999999


Q ss_pred             cccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHH
Q 003425          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL  511 (821)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~  511 (821)
                      |.+++.+.||+++++|.++|+++.|++++|.+++..+|++.+..++..
T Consensus       326 e~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~  373 (381)
T 4din_B          326 EIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY  373 (381)
T ss_dssp             TTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred             hHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998877665443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.6e-14  Score=146.55  Aligned_cols=124  Identities=27%  Similarity=0.352  Sum_probs=112.5

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++.   +|+.  +..+.+|++|||
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~--~~~~~~g~~fGe   79 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK--VNSSGPGSSFGE   79 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC--CEEECTTCEECH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE--EEecCCCCeeeh
Confidence            35678899999999999999999999999999999999999999999999999999986   3433  688999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      .+++.+.|++++++|.++|.++.|++++|.+++..+|.....+...++.
T Consensus        80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  128 (246)
T 3of1_A           80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK  128 (246)
T ss_dssp             HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred             hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999877666555443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.3e-14  Score=145.47  Aligned_cols=117  Identities=19%  Similarity=0.379  Sum_probs=107.6

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ...+++++++|..++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.++++....   . .+..+.+|++|||
T Consensus       123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~~fGe  198 (246)
T 3of1_A          123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHDYFGE  198 (246)
T ss_dssp             SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTCEECH
T ss_pred             HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCCcccH
Confidence            44667888999999999999999999999999999999999999999999999999987332   2 7889999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchH
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR  505 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~  505 (821)
                      .+++.+.|++++++|.++|+++.|++++|.+++..+|++.+
T Consensus       199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~  239 (246)
T 3of1_A          199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK  239 (246)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred             HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence            99999999999999999999999999999999999887643

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.50  E-value=1.5e-14  Score=144.30  Aligned_cols=119  Identities=12%  Similarity=0.092  Sum_probs=111.7

Q ss_pred             hccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccc
Q 003425          388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI  467 (821)
Q Consensus       388 ~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~  467 (821)
                      +++++|+|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++ ..++|++.++..+.+|++||    
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence            4678999999999999999999999999999999999999999999999999997 78899999999999999999    


Q ss_pred             cccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       468 ~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                         .+++++++|.++|+++.|++++|.++++.+|.+...++..+..+
T Consensus        76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~  119 (222)
T 1ft9_A           76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA  119 (222)
T ss_dssp             ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence               78899999999999999999999999999999999988777653

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.50  E-value=4.7e-14  Score=152.36  Aligned_cols=126  Identities=25%  Similarity=0.375  Sum_probs=115.9

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ....++++++++|.+++++.+..++..++.+.|++|++|+++|+.++.+|+|.+|.|+++.   +|  ..+..+.+|++|
T Consensus       126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~f  200 (381)
T 4din_B          126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSF  200 (381)
T ss_dssp             HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCB
T ss_pred             HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEE
Confidence            3456788999999999999999999999999999999999999999999999999999996   34  367889999999


Q ss_pred             ccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ||.+++.+.|+.++++|.++|+++.|++++|.+++..+|...+.++..++.
T Consensus       201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~  251 (381)
T 4din_B          201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS  251 (381)
T ss_dssp             CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999988877766654

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.50  E-value=4.5e-14  Score=143.59  Aligned_cols=125  Identities=16%  Similarity=0.118  Sum_probs=114.9

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccc
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS  466 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~  466 (821)
                      .++.+...+..++++.+..+...++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+.+|++||+  
T Consensus         9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--   86 (250)
T 3e6c_C            9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--   86 (250)
T ss_dssp             CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred             hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence            344445555899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             ccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          467 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      ++.+. ++++++|.++|+++.|++++|.++++.+|++...++..+..+
T Consensus        87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~  133 (250)
T 3e6c_C           87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  133 (250)
T ss_dssp             CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            77788 999999999999999999999999999999999888777653

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.46  E-value=1.4e-14  Score=123.21  Aligned_cols=89  Identities=20%  Similarity=0.085  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (821)
Q Consensus       208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p  287 (821)
                      .++..++.+++++.+.++++++++...+...                        +.+|.+|+||+++|+|||||||++|
T Consensus         7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~------------------------~~~~~~a~y~~~~T~tTvGyGDi~P   62 (103)
T 2k1e_A            7 EAQKAEEELQKVLEEASKKAVEAERGAPGAA------------------------LISYPDAIWWSVETATTVGYGDRYP   62 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------------------------CCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCcc------------------------cccHHHHHHHHHHHHhcccCCCCCC
Confidence            3455566666777788888888875422110                        1257899999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       288 ~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|+.+++++++++++|+.+++++++.+.+.+.+
T Consensus        63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~   95 (103)
T 2k1e_A           63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR   95 (103)
T ss_dssp             CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987755

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.45  E-value=8.8e-13  Score=113.96  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|.+|+||+++|+|||||||++|.|+.+++++++++++|+.++++.++.+++.+..
T Consensus        49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~  104 (114)
T 2q67_A           49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL  104 (114)
T ss_dssp             CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999998855

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.44  E-value=5.7e-13  Score=107.64  Aligned_cols=54  Identities=26%  Similarity=0.384  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~  318 (821)
                      .|.+|+||+++|+|||||||++|.|+.+|+++++.+++|+.++++.++.+++.+
T Consensus        28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999999999999998765

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.44  E-value=4.8e-13  Score=134.82  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=105.7

Q ss_pred             cCCCHHHHHHHHH--hcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc
Q 003425          396 KGCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (821)
Q Consensus       396 ~~~~~~~l~~l~~--~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~  473 (821)
                      ++++++.+..+..  .++.+.|++|++|+++|+.++.+|||.+|.|+++..+++|++.++..+ +|++||+.+++.+.++
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~   80 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS   80 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence            3678888998885  589999999999999999999999999999999999999999999999 9999999999998874


Q ss_pred             --ceEEEEe-cceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          474 --PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       474 --~~~~~a~-~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                        +.++.|. ++|+++.|++++|.++++.+|++...+++.+..
T Consensus        81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  123 (238)
T 2bgc_A           81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK  123 (238)
T ss_dssp             SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence              7788888 599999999999999999999999998877765

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.43  E-value=4e-13  Score=135.81  Aligned_cols=114  Identities=21%  Similarity=0.239  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhcc---cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc--c
Q 003425          400 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P  474 (821)
Q Consensus       400 ~~~l~~l~~~~~---~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~--~  474 (821)
                      ++.++.|.....   .+.|++|++|+.+|+.++.+|||.+|.|+++..+++|++.++.++.+|++||+.+++.+.|.  .
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~  109 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF  109 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence            667778888888   99999999999999999999999999999999999999999999999999999999998874  5


Q ss_pred             eEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       475 ~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++++|.++|+++.|++++|.++++.+|++...++..+..
T Consensus       110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  148 (243)
T 3la7_A          110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS  148 (243)
T ss_dssp             EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            899999999999999999999999999999988876654

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.43  E-value=3.6e-13  Score=150.68  Aligned_cols=124  Identities=19%  Similarity=0.321  Sum_probs=107.5

Q ss_pred             hhhhhhccccccccCCCHHHHHHHHHhccc-ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCc
Q 003425          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (821)
Q Consensus       383 ~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~-~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~  461 (821)
                      ....+++.++++|.+++++.+..++..+.. ..|++|++|+++|+.++.+|||.+|.|+++.   .+. .++..+.+|++
T Consensus       333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~~  408 (469)
T 1o7f_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD  408 (469)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred             HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCCE
Confidence            334577899999999999999999999985 4999999999999999999999999999987   233 37889999999


Q ss_pred             cccccccccCCcceEEEEec-ceEEEEechHhHHHHHHHhhhchHHHHHH
Q 003425          462 FGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTN  510 (821)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~p~~~~~~l~~  510 (821)
                      |||.+++.+.|++++++|.+ +|+++.|++++|.+++..+|++...+.+.
T Consensus       409 fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~  458 (469)
T 1o7f_A          409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH  458 (469)
T ss_dssp             ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred             EEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence            99999999999999999998 79999999999999999999988876543

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.39  E-value=1.8e-12  Score=108.35  Aligned_cols=55  Identities=31%  Similarity=0.438  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~  319 (821)
                      .|.+|+||+++|+|||||||++|.|..+++++++++++|+.++++.++.++..++
T Consensus        32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A           32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4889999999999999999999999999999999999999999999999988763

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.35  E-value=1.1e-12  Score=151.01  Aligned_cols=131  Identities=20%  Similarity=0.332  Sum_probs=115.9

Q ss_pred             cHHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcc-cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccc
Q 003425          373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED  451 (821)
Q Consensus       373 p~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~-~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~  451 (821)
                      |+..|.+.......+.+.++++|.+++++.+..++..+. .+.|++|++|+++||.++.+|||.+|.|+++..   |+ .
T Consensus        18 ~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~   93 (694)
T 3cf6_E           18 PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-G   93 (694)
T ss_dssp             CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-E
T ss_pred             ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-E
Confidence            344454444455667899999999999999999999998 789999999999999999999999999999873   33 5


Q ss_pred             eEEEeCCCCccccccccccCCcceEEEEec-ceEEEEechHhHHHHHHHhhhchHHH
Q 003425          452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       452 ~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      ++..+.+|++|||.+++.+.+++++++|.+ +|+++.|++++|.++++.+|.+...+
T Consensus        94 il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l  150 (694)
T 3cf6_E           94 VVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL  150 (694)
T ss_dssp             EEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred             EEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence            789999999999999999999999999999 59999999999999999999886654

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.33  E-value=2.2e-12  Score=157.26  Aligned_cols=129  Identities=23%  Similarity=0.296  Sum_probs=113.2

Q ss_pred             HHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC--CccceEE
Q 003425          377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN--GTEDYVS  454 (821)
Q Consensus       377 ~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~--g~~~~i~  454 (821)
                      |.+-..+.....|+++++|+++++..+.+|+..++.+.|++|++||++||.++++|+|.+|.|.++....+  +.+..+.
T Consensus        32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~  111 (999)
T 4f7z_A           32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC  111 (999)
T ss_dssp             CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred             CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence            43333344456789999999999999999999999999999999999999999999999999999865433  4566788


Q ss_pred             EeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHH
Q 003425          455 YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (821)
Q Consensus       455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~  506 (821)
                      .+.+|+.||| +++.+.||+++++|.++|++++|++++|..++.++|+....
T Consensus       112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~  162 (999)
T 4f7z_A          112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG  162 (999)
T ss_dssp             EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred             EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence            9999999999 89999999999999999999999999999999999875443

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.30  E-value=4.8e-12  Score=123.11  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=87.6

Q ss_pred             ccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecceEEEEechHh
Q 003425          413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS  492 (821)
Q Consensus       413 ~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~  492 (821)
                      +.|++|++|+++|++++.+|||.+|.|+++..+++|++.++..+.+|++||+ +++.+.|++++++|.++|+++.|++++
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~   80 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA   80 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence            5789999999999999999999999999999889999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHHHhc
Q 003425          493 FTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       493 f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      |.      |++...++..+..
T Consensus        81 ~~------p~~~~~~~~~l~~   95 (195)
T 3b02_A           81 MD------HEALHRVARNLAR   95 (195)
T ss_dssp             CC------HHHHHHHHHHHHH
T ss_pred             cC------HHHHHHHHHHHHH
Confidence            98      8887777766654

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.25  E-value=9.2e-15  Score=136.41  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      .|.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++++.+++.+...
T Consensus        67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~  123 (166)
T 3pjs_K           67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ  123 (166)
T ss_dssp             STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred             CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477999999999999999999999999999999999999999999999998887663

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.21  E-value=3.7e-11  Score=122.51  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|.+|+||+++|+|||||||++|.++.+++++++.+++|++++|+++|.+.+.++.
T Consensus        82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999887755

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.19  E-value=1.8e-11  Score=119.71  Aligned_cols=100  Identities=21%  Similarity=0.222  Sum_probs=87.8

Q ss_pred             HHHhcccccccccCeEEccCCcc--CeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEecce
Q 003425          406 IVIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELC  483 (821)
Q Consensus       406 l~~~~~~~~~~~~e~I~~~g~~~--~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~  483 (821)
                      |...++.+.|++|++|+++|+++  +.+|||.+|.|+++..+++|++.++..+.+|++||+ +++.+.+++++++|.++|
T Consensus         1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~   79 (202)
T 2zcw_A            1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDV   79 (202)
T ss_dssp             -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCE
T ss_pred             CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccE
Confidence            35677889999999999999999  999999999999999889999999999999999999 988999999999999999


Q ss_pred             EEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          484 RLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       484 ~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +++.| +++|.      |++...++..+..
T Consensus        80 ~v~~i-~~~~~------p~~~~~~~~~l~~  102 (202)
T 2zcw_A           80 RLEPL-PENPD------PELLKDLAQHLSQ  102 (202)
T ss_dssp             EEEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred             EEEEE-hHhcC------HHHHHHHHHHHHH
Confidence            99999 98886      7777777766554

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.18  E-value=3.9e-11  Score=146.35  Aligned_cols=113  Identities=20%  Similarity=0.329  Sum_probs=100.7

Q ss_pred             hhhhhccccccccCCCHHHHHHHHHhcccc-cccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       384 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~-~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ...+.+.++|.|.+++...++.|+..+... .+++|++|+++||.++.+|||.+|.|+++.   .+ +..+..+++||+|
T Consensus       334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~-~~~v~~L~~Gd~F  409 (999)
T 4f7z_A          334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YG-KGVVCTLHEGDDF  409 (999)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TT-TEEEEEEETTCEE
T ss_pred             HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cC-CcceEEecCCCcc
Confidence            345678899999999999999999999865 457799999999999999999999999986   22 3357889999999


Q ss_pred             ccccccccCCcceEEEEecc-eEEEEechHhHHHHHHHh
Q 003425          463 GEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIY  500 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~-~~~~~i~~~~f~~~l~~~  500 (821)
                      ||.+++++.||.+|++|.++ |++++|++++|.+++...
T Consensus       410 GElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~  448 (999)
T 4f7z_A          410 GKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV  448 (999)
T ss_dssp             CGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred             cchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence            99999999999999999985 999999999999998754

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.17  E-value=7.7e-11  Score=117.31  Aligned_cols=205  Identities=13%  Similarity=0.162  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHhhhcceeeeeec--CCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhh-
Q 003425           74 RAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-  150 (821)
Q Consensus        74 ~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~-  150 (821)
                      ..++.++.++++.+++...+.. +..  +....+..+|.++.++|++|+++|+...            +.+  ++|+++ 
T Consensus        12 ~~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~------------~~~--~~y~~~~   76 (229)
T 4dxw_A           12 RIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGE------------KQK--ADFFKSG   76 (229)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CH
T ss_pred             chHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------Cch--hHHhcCC
Confidence            4567788888888877766553 211  1123467899999999999999976432            222  689988 


Q ss_pred             hhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhhhHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYY  229 (821)
Q Consensus       151 ~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~h~~ac~~~~  229 (821)
                      |.++|+++++|..+.....   ...+.+|++|++|++|+.+..+.++.... .......+..+.+.++++..++|.+-+.
T Consensus        77 wni~D~~~v~~~~i~~~~~---~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~  153 (229)
T 4dxw_A           77 WNIFDTVIVAISLIPIPNN---SSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAI  153 (229)
T ss_dssp             HHHHHHHHHHHTTCC-----------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhcCcc---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799988877643322111   12233344444444444444444433222 2333445556666666666666665444


Q ss_pred             HHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc----CChhHH-HHHHHHHHHHH
Q 003425          230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA----VNLREM-VFIMIYVSFDM  304 (821)
Q Consensus       230 i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p----~t~~e~-~~~~~~~i~g~  304 (821)
                      +.....+                        +.|+++..|+||.+.++||.||+|+..    .++... .+..++.+.+.
T Consensus       154 lf~~~~~------------------------~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~  209 (229)
T 4dxw_A          154 LFGNDDP------------------------SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSI  209 (229)
T ss_dssp             HTTTTSC------------------------TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHH
T ss_pred             HhccCCc------------------------ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            3322110                        113468999999999999999999722    222333 33445555566


Q ss_pred             HHHHHHHHHHHHHHhc
Q 003425          305 ILGAYLIGNMTALIVK  320 (821)
Q Consensus       305 ~~~a~~i~~i~~~~~~  320 (821)
                      ++..++++.+.+.+++
T Consensus       210 i~lNlfiavi~~~f~~  225 (229)
T 4dxw_A          210 TILNLVIAILVDVVIQ  225 (229)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777666654

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.15  E-value=9.7e-11  Score=120.28  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      .|.+|+||+++|||||||||++|.+..+++++++.+++|++++|+++|.+.+.++..
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~  134 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP  134 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999988763

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.14  E-value=5.7e-11  Score=122.27  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~~  321 (821)
                      .|.+|+||+++|+|||||||++|.++.+++++++.+++|++++|+++|.+.+.+...
T Consensus        96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~  152 (333)
T 1p7b_A           96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP  152 (333)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999988763

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.08  E-value=1.5e-09  Score=109.71  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|.+|+||+++|+|||||||++|.|..+++++++++++|+.+++++++.++..+..
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~  170 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS  170 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999887754

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.02  E-value=1.5e-09  Score=109.86  Aligned_cols=56  Identities=21%  Similarity=0.332  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~------~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .|++|+||+++|+|||||||++|.+..++      +++++++++|+.+++++++.+++.+..
T Consensus       224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~  285 (309)
T 3um7_A          224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV  285 (309)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999998886      599999999999999999999988766

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.00  E-value=2.4e-09  Score=109.62  Aligned_cols=98  Identities=18%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCC--CCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425          210 VKLIAVELYCSHIAACIFYYLATTLPPE--QEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (821)
Q Consensus       210 ~~~~~~~l~~~h~~ac~~~~i~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p  287 (821)
                      +.+++.+++...+||++||.++....+.  ..+.+|.+ +-..            ...+..+|||+++|+|||||||+.|
T Consensus        47 lif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~-Cv~~------------~~sf~~af~fSv~T~TTvGYGd~~p  113 (340)
T 3sya_A           47 LIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTP-CVTN------------LNGFVSAFLFSIETETTIGYGYRVI  113 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCC-SBSC------------CCSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-hhcc------------ccCHHHHHhhhheeeeeecCCCccC
Confidence            3344445566678999999887422111  11111211 0000            1246789999999999999999999


Q ss_pred             C--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          288 V--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       288 ~--t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      .  ++.+++++++.+++|+++.|+++|.+.+-++.
T Consensus       114 ~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr  148 (340)
T 3sya_A          114 TDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ  148 (340)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            7  68999999999999999999999999887766

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.87  E-value=4.6e-09  Score=119.63  Aligned_cols=86  Identities=22%  Similarity=0.325  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCcccc
Q 003425          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (821)
Q Consensus       208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~p  287 (821)
                      .+...++.+++++++++|+|+++....+.    ..|                     .|++|+||+++|+|||||||++|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~---------------------~~~~~~y~~~~t~tTvGygd~~p   73 (565)
T 4gx0_A           19 VLLLYCAFLLVMLLAYASIFRYLMWHLEG----RAY---------------------SFMAGIYWTITVMTTLGFGDITF   73 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCC---------------------CHHHHHHHHHHHHTTCCCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCC---------------------chhhhhheeeeeeeeecCCCcCC
Confidence            45666777777777888887776532111    112                     37899999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 003425          288 VNLREMVFIMIYVSFDMILGAYLIGN-MTALI  318 (821)
Q Consensus       288 ~t~~e~~~~~~~~i~g~~~~a~~i~~-i~~~~  318 (821)
                      .|+.+++++++++++|++++++.++. +++.+
T Consensus        74 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  105 (565)
T 4gx0_A           74 ESDAGYLFASIVTVSGVIFLDIILPFGFVSMF  105 (565)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 55544

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.87  E-value=8.1e-09  Score=102.76  Aligned_cols=54  Identities=15%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~  318 (821)
                      .|.+|+||+++|+|||||||++|.|+.+++++++++++|+.+++++++.+...+
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l  146 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI  146 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999987654

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.85  E-value=9.8e-09  Score=105.32  Aligned_cols=98  Identities=16%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCC---CCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhccccCccc
Q 003425          210 VKLIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH  286 (821)
Q Consensus       210 ~~~~~~~l~~~h~~ac~~~~i~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGyGdi~  286 (821)
                      +.++..+++...++|.+||+++....+   .....+|.+-.             .-...+..+|||++.|+|||||||+.
T Consensus        49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv-------------~~~~sf~~af~fSv~T~TTvGYGd~~  115 (343)
T 3spc_A           49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCV-------------LQVNGFVAAFLFSIETQTTIGYGFRC  115 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSE-------------ETCCSHHHHHHHHHHHHSCCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccc-------------cccCCHHHHhheeeeeeEeecCCCcc
Confidence            334455566677888888887643211   11111221100             00235889999999999999999998


Q ss_pred             cC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          287 AV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       287 p~--t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      |.  ++.+++++++.+++|+++.|+++|.+.+-++.
T Consensus       116 p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A          116 VTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            74  89999999999999999999999999888876

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.81  E-value=3.5e-09  Score=105.34  Aligned_cols=54  Identities=19%  Similarity=0.322  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALI  318 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~-------e~~~~~~~~i~g~~~~a~~i~~i~~~~  318 (821)
                      .|++|+||+++|+|||||||++|.+..       +++++++++++|+.+++++++.+..++
T Consensus       201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~  261 (280)
T 3ukm_A          201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELH  261 (280)
T ss_dssp             CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred             chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            488999999999999999999999885       599999999999999999999997765

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=98.81  E-value=7.4e-10  Score=99.85  Aligned_cols=118  Identities=19%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             ccccccCCcCeEEcCCChhHHHHHHHHHHHHHHHhhhcceeeeee--cCCCcCeehhHHHHHHHHHHhHhheeeEEEEeC
Q 003425           54 LSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDS  131 (821)
Q Consensus        54 ~~~~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~  131 (821)
                      .+.+|.+.+..+.+|      .|+.++.++++.+++++.+.....  .+....+..+|.++.++|++|+++|+.      
T Consensus         7 ~~~~~~~~~~~~e~~------~f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~------   74 (147)
T 2kyh_A            7 LGGRVRNIGDVMEHP------LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAY------   74 (147)
T ss_dssp             CSHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHHHHHhCc------hHHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            334555555555444      356666666666555544443221  112234678999999999999999764      


Q ss_pred             CceEEeeccHHHHHHHhhhhhHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHh
Q 003425          132 QTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHK  195 (821)
Q Consensus       132 ~~~~~v~~~~~I~~~Ylk~~f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~  195 (821)
                            ..|++  ++|+++ -++|++|++|++..+...   ..++++|++|++|++|+.++.+.
T Consensus        75 ------~a~~k--~~f~~~-~iiDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~r~  126 (147)
T 2kyh_A           75 ------KSGDP--AGYVKK-TLYEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRILLI  126 (147)
T ss_dssp             ------HHTCH--HHHHHH-STTTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             ------HCCcH--HHHHHH-HHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Confidence                  33445  789998 699999999988665431   22444444444444444444433

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.62  E-value=9.3e-09  Score=91.52  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhhhcceeeeeec--CCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhh
Q 003425           74 RAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSS  151 (821)
Q Consensus        74 ~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~  151 (821)
                      ..++.+++++++.+.+...+......  .....+..+|.++.++|++|+++|+..            .|++  ++|++ |
T Consensus         6 ~~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~------------~~~~--~~y~~-~   70 (132)
T 1ors_C            6 PLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYK------------SGDP--AGYVK-K   70 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH------------TTST--TTTTT-T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCH--HHHHH-H
Confidence            35677777777776665554432111  112346789999999999999997743            3333  78999 8


Q ss_pred             hHHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 003425          152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKME  197 (821)
Q Consensus       152 f~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~  197 (821)
                      -++|+++++|+.+.....+....+|.+|++|++|++|+.++...++
T Consensus        71 niiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~  116 (132)
T 1ors_C           71 TLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGS  116 (132)
T ss_dssp             CGGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            8999999999876554311122344455555555555555544443

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.44  E-value=1.4e-08  Score=107.44  Aligned_cols=55  Identities=24%  Similarity=0.409  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       266 Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      |.+|+||+++|+|||||||++|.|+.+++++++++++|+++++++++.+++.+.+
T Consensus        46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~  100 (336)
T 1lnq_A           46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN  100 (336)
T ss_dssp             SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred             HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5589999999999999999999999999999999999999999999999887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	821
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-33
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-19
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	3e-17
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	1e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-15
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-09
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	5e-15
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	1e-14
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	1e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	2e-12
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	4e-12
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	3e-11
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	4e-11
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	1e-10
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	1e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.004
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	4e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-06
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	8e-09
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	2e-08
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	1e-06
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-04
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	4e-06
d1o5la1	129	b.82.3.2 (A:1-129) CRP-like transcriptional regula	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-04
d3e5ua2	139	b.82.3.2 (A:9-147) Chlorophenol reduction protein	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  130 bits (327), Expect = 4e-33
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 35/226 (15%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           A++ G L  ++ L++ GA PN ++    +PLH+AA  G+ E+  +L+Q    +N K    
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNV-------------------------------- 633
            TPL  A + G+     LL++  A+ N+                                
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 634 ---EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
              ++  + L  A   G   + + +L     PN    +  TPLHVA       + KLL+ 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 691 AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGF 736
            G S       G TPL          + + L     +   E   G 
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 232

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 9e-26
 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 2/177 (1%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 607
               +     L++ G   N     G +PLHLAA  G+ E++  L+ K  + NL +  G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 608 PLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
           PL    + G+   A +L+K G  ++       + L  A   G+  L+K +L +  D N +
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
                +PLH AA +G   +  LL++ GAS       G TPL   +  G  ++  +L+
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-23
 Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 2/177 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA +G +   E L+   A PN    +G +PLH+A      +I+  L+ +G   +     G
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 198

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
            TPL  A K      A  L++ G S N    +  + L  A   G ++++  +LS   + N
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 7e-23
 Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 35/185 (18%)

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV- 633
           PLH+A+  G+  I+  L+Q+G   N+ +    TPL  A + G+   A  L++  A +N  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 634 -EEAGSFLCTAVARGDSDLLKRVLSNGIDP------------------------------ 662
            ++  + L  A   G ++++K +L N  +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 663 ---NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
                      TPLHVAA  G   +A+LL+E  A      + G TPL       N +++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 720 LLEDA 724
           LL   
Sbjct: 183 LLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 3e-19
 Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 2/178 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G +  +  L+   A        G +PLH+AA  G   +   L+++    N     G
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 165

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSF--LCTAVARGDSDLLKRVLSNGIDPN 663
            TPL  A+ + N     LL+  G S +      +  L  A  +   ++ + +L  G   N
Sbjct: 166 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 225

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
                  TPLH+AA EG   M  LL+   A+    ++ G TPL      G+  +  +L
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (200), Expect = 6e-17
 Identities = 34/125 (27%), Positives = 52/125 (41%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD 699
           L  A   G   ++K +L  G  PN  +  + TPLH+AA  G   +AK L++  A V  K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 700 RWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWDA 759
           +   TPL      G+ N++KLL +  +   L    G              TV      +A
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 123

Query: 760 KESRR 764
            ++  
Sbjct: 124 SQACM 128

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 2e-15
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 607
           ++G++  ++ L++  AD N     G SPLH AA +G+ +I+T L++ G   N   + G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 608 PLLEAIKYGNDGAASLL---VKEGASLNVEE 635
           PL  A + G      +L     E + + V +
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.7 bits (177), Expect = 5e-14
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 34/162 (20%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
            A  G +   + LI+ G   + T   G +PLH+A+  G  +++ FL+Q   D+N K   G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR 665
            +PL +A + G+    +LL                               L NG  PN  
Sbjct: 331 YSPLHQAAQQGHTDIVTLL-------------------------------LKNGASPNEV 359

Query: 666 DYDLRTPLHVAASEGLYLMAKLL---VEAGASVFPKDRWGNT 704
             D  TPL +A   G   +  +L    +  + V   D+   +
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 7e-08
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 671 TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL 721
           TPLHVA+  G   + K L++ GAS    +    TPL      G+  + K L
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 52

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 9e-23
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 3/135 (2%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           L+  GA  N  + +G +PLH AAS+   EI   L++ G + + KD++  T +  A   GN
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 618 DGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHV 675
                +L+   AS N+   E  + L  A      +  K ++S G      + + +TPL V
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 676 AASEGLYLMAKLLVE 690
           A   GL L+ K +VE
Sbjct: 209 AK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 2e-22
 Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 600 LKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLS 657
            KD+ G +PL  A   G D     L+ +GA +N   +   + L  A ++   ++   +L 
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
            G +P+ +D+   T +H AA++G   M  +L+   AS   +D  GNTPL           
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 718 IKLL 721
            KLL
Sbjct: 185 AKLL 188

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 1e-21
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAA-- 621
             R    G + L  AA +G+ E++  L+ + G D+N  DN G   L+ A+   +D     
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 622 --SLLVKEGASLNV--EEAGSFLCTAVARGDSDLLKRVLS-NGIDPNTRDYDLRTPLHVA 676
              LL+  GA +NV  E   + L  AV +    L++R+L    I+ N  D D +T L +A
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 677 ASEGLYLMAKLLVEAGASVFPKD 699
               L  +A+LL + GAS    D
Sbjct: 261 VELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 5e-19
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNTPLLEAIK 614
             L+  GAD N     G++PL LA  + +  ++  L+ Q+ ++IN  D+ G T LL A++
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 615 YGNDGAASLLVKEGASLNV 633
                 A LL K GAS + 
Sbjct: 263 LKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 9e-15
 Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 14/188 (7%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A  + D+  ++ L+  GA+ N + +  G +PLH A     E+I+  L++ G D  L+   
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEA--GSFLCTAVARGDSDLLKRVLSNGIDP 662
           G TP L A   G+     L + +GA +N  +    +    A   G    LK +   G + 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 663 NTRDY----------DLRTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPLDEGRM 711
           N R               T L  AA +G   + K+L+ E GA V   D  G   L    +
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 712 CGNKNLIK 719
             + + ++
Sbjct: 192 SSDDSDVE 199

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 6e-13
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 13/164 (7%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN-FGNTPLLEAIKYGNDGAASLLVKEGA 629
           +    L  A      +++  L++ G ++N ++   G TPL  A++   +    LL++ GA
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 630 SLNVEEAGSFLCT--AVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKL 687
              + +         A   G   LLK  LS G D N  D+   T    AA  G     K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 688 LVEAGASVFPKDRW----------GNTPLDEGRMCGNKNLIKLL 721
           L + GA+V  + +           G T L +    G+  ++K+L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 6e-12
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           L +   + N TD DG++ L LA     ++I   L ++G   +  D
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-06
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 1/139 (0%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDPNTRDYDL-RTPLHVAASEGLYLMAKLLVEAGASVFPK 698
           L  AV   D DL++++L  G + N ++ +   TPLH A       + +LL+  GA    +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 699 DRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPWD 758
            + G TP     + G+  L+KL     +       +GF    +     +   +   +   
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 759 AKESRRHGIVLWIPQNIKD 777
           A  + R        +  K 
Sbjct: 129 ANVNLRRKTKEDQERLRKG 147

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (219), Expect = 7e-20
 Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 22/184 (11%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLK 601
                +L  ++ L++ G++    D  G S L  A               L      + L+
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 602 DNFGNTPLLEAIKYGN------------DGAASLLVKEGASLNVE---EAGSFLCTAVAR 646
           D+   T L   I                D     +VK+          E  S        
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 647 GDSDLLKRVLSN---GIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGN 703
               +L+ +          N +D +  T L++AA  G   +   L++ GA  F  ++ G 
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 293

Query: 704 TPLD 707
            P+D
Sbjct: 294 RPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.6 bits (205), Expect = 5e-18
 Identities = 39/246 (15%), Positives = 87/246 (35%), Gaps = 28/246 (11%)

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS---AAYHGDLYQL-EGL 558
           + +  L   LQ +     ++++ + +    S   +E           ++   L ++ +  
Sbjct: 34  EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 92

Query: 559 IRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
                + N   D  G +PLH   S    E++  L++ G +    DN G + L++A+K  N
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 152

Query: 618 DGAA-------SLLVKEGASLN----------VEEAGSFLCTAVARGDSDLLKRVL--SN 658
           +  +         L       +          +  +G   C+A A+   D+L   +    
Sbjct: 153 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 212

Query: 659 GIDPNTRDYDLRTPLHVAASEGLYLMAKLLV---EAGASVFPKDRWGNTPLDEGRMCGNK 715
                +   +  +  +    E    + + L         +  +D  G+T L+     GN 
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 272

Query: 716 NLIKLL 721
           +++  L
Sbjct: 273 SIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.1 bits (170), Expect = 1e-13
 Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 3/99 (3%)

Query: 518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLI---RAGADPNRTDYDGRS 574
           D+ +  +       I     E   K N          LE L          N  D +G +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI 613
            L++AA  G   I+  L+  G D  + +  G  P+    
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (154), Expect = 2e-11
 Identities = 23/151 (15%), Positives = 41/151 (27%), Gaps = 34/151 (22%)

Query: 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
            H     + +     +A Y+ D+     + +          +  S  +       + I+ 
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 590 FLIQK---GVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVAR 646
            L  K      +N +D+ G+T L  A + GN      L                      
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL---------------------- 278

Query: 647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
                    L  G DP   +     P+   A
Sbjct: 279 ---------LDYGADPFIANKSGLRPVDFGA 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 88.0 bits (217), Expect = 3e-19
 Identities = 35/264 (13%), Positives = 72/264 (27%), Gaps = 30/264 (11%)

Query: 486 LRIDKQSFTNIIDIYFCDGRKV--LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKV 543
           L +   S+   I I+    + +  +  LL    +       Q     H    ++E+   V
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 544 NSAAYHGDLYQLE---GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
             AA  G    L+    L+ +         +      LAA  G+  ++  L +      +
Sbjct: 97  --AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 601 KD--NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGS-----FLCTAVARGDSDLLK 653
                        A + G+    + L +   +       +     F   AV RG  +++ 
Sbjct: 155 AMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

Query: 654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE----------------AGASVFP 697
            +L   +     +           +  +      L E                   S   
Sbjct: 215 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 274

Query: 698 KDRWGNTPLDEGRMCGNKNLIKLL 721
           +  +    L         + I+ L
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 85.7 bits (211), Expect = 1e-18
 Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 10/238 (4%)

Query: 515 KESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRS 574
             ++L L  L      HI     +   +V         +      +  +D ++       
Sbjct: 33  SANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEV 92

Query: 575 PLHLAASRGYE---EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASL 631
              +AA  G     + +  L+     + +           A + G+    + L +   + 
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 632 NVEEAGSFLCTA----VARGDSDLLKRVLSNGIDPN---TRDYDLRTPLHVAASEGLYLM 684
            +    +    A       G   +L R+            +  +       A   G + +
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 212

Query: 685 AKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK 742
              L++    +   +       ++         +  L++      L  P G  D   K
Sbjct: 213 INFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTK 270

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.4 bits (179), Expect = 2e-14
 Identities = 24/223 (10%), Positives = 53/223 (23%), Gaps = 26/223 (11%)

Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           I  +E +  L++       +L+Q   +           Y     + L  ++  E++   L
Sbjct: 7   IENYENDPQLRLIPWILWENLFQ-HFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 592 IQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDL 651
                  N       +   +                               A   G S  
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSE--------------------VICFVAAITGCSSA 105

Query: 652 LKRV---LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR--WGNTPL 706
           L  +   L++         +      +AA  G   +   L E   +              
Sbjct: 106 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

Query: 707 DEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKC 749
                 G+ +++  L +   T+           A +     + 
Sbjct: 166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 208

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.1 bits (160), Expect = 4e-12
 Identities = 28/183 (15%), Positives = 50/183 (27%), Gaps = 23/183 (12%)

Query: 547 AYHGDLYQLEGLIRAGADPNR---TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
           A +G L+ L  L               +  +    A  RG+  ++ FL+   V +     
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA---- 224

Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
                 +   +YG       + +    L   E       +   G  DL+ +         
Sbjct: 225 ---YAEIHEFEYGEKYVNPFIARHVNRLK--EMHDAFKLSNPDGVFDLVTK------SEC 273

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVEAGA-----SVFPKDRWGNTPLDEGRMCGNKNLI 718
            + + +   L     E L    + L+                  N  L      GN+   
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 333

Query: 719 KLL 721
            LL
Sbjct: 334 ALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.4 bits (122), Expect = 2e-07
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           E   A K+++     DL                 +     L         + + FL+   
Sbjct: 251 EMHDAFKLSNPDGVFDL--------VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 302

Query: 596 VDINLK-----DNFGNTPLLEAIKYGNDGAASLLV 625
               L          N  L  A++ GN GA +LL+
Sbjct: 303 GIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 8/53 (15%), Positives = 12/53 (22%), Gaps = 5/53 (9%)

Query: 546 AAYHGDLYQLEGLIRAGADP-----NRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
                 L  +  L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 1e-17
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 53/232 (22%)

Query: 546 AAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD 602
           A  H     L+ L+   A     +  +  G++ LHLAA  G    +  L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 603 NFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCT----------------AVAR 646
             G+T L  A +      A +L++   S   + + ++L                  +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 647 GDSDLLKRVLSNGIDPNTRDYD----------------------------------LRTP 672
            +++   R     +     +YD                                   RTP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 673 LHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
           LH+A       + +LL++AGA    +   G TPL    +  N  L +LL   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.3 bits (168), Expect = 1e-13
 Identities = 29/166 (17%), Positives = 48/166 (28%), Gaps = 19/166 (11%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---INLKDNFGNTPLLEAIKYGNDGAAS 622
                DG + LHLA    +E  + FL+        ++L+++ G T L  A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 623 LLVKEGASLNVEEAGSFLCTAVA--RGDSDLLKRVLSNGIDPN--------------TRD 666
            L   GA + V E G      +A           +L                     T D
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
                    +             +    +  ++  G+TPL    + 
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 1e-11
 Identities = 37/165 (22%), Positives = 56/165 (33%), Gaps = 17/165 (10%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSP--------------LHLAASRGYEEIMTFL 591
           A           L++      R   D                     +      E     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 592 IQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG---SFLCTAVARGD 648
               + +  ++  G+TPL  A+ + +     LL   GA LN  E     + L  AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 649 SDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA 693
           + +L+ +L  G DP  R Y  RTPL  A      ++A+LL   GA
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 5e-10
 Identities = 21/65 (32%), Positives = 29/65 (44%)

Query: 570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGA 629
             GR+PLHLA       ++  L++ G D   +   G TPL  A+   N   A LL   GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 630 SLNVE 634
               +
Sbjct: 250 PEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 640 LCTAVARGDSDLLKRVLSNGIDP---NTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
           L  AV       L  +L         + ++   +T LH+AA  G     + L  AGA V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 697 PKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNP 745
             +R G+T L             +L   + +   +    +   +    P
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 19/165 (11%), Positives = 46/165 (27%), Gaps = 5/165 (3%)

Query: 598 INLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG-----SFLCTAVARGDSDLL 652
                  G+T L  A+ + ++     L+   A     +       + L  A   G++  +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 653 KRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
           +++ + G      +    T LH+A     +  A +L++   S             +    
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 713 GNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPW 757
              +    ++   + +  E P                        
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.5 bits (192), Expect = 3e-17
 Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 12/203 (5%)

Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEAS-VLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+    +   +L ++   +R +I
Sbjct: 2   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 61

Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G + 
Sbjct: 62  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV- 120

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
                     +    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 121 ----SVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 176

Query: 501 FCDGRKVLTNLLQGKESDLRLKQ 523
               R   T  +       RL +
Sbjct: 177 PMMRRAFETVAID------RLDR 193

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  +     +  
Sbjct: 18  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 77

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
                +Y     SFGE++++ N P+  T+       L  +D+ +F  II 
Sbjct: 78  GRCVGNY-DNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIV 126

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 74.4 bits (181), Expect = 1e-15
 Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 558 LIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG 616
           L+  GA+ N   D  G + LHLAA     +    L+  G D N +DN G TPL  A+   
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 67

Query: 617 NDGAASL----------------------------------LVKEGASLNV--EEAGSFL 640
             G   +                                  L+   A +N       + L
Sbjct: 68  AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 127

Query: 641 CTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR 700
             A A  +++ +  +L +  + + +D    TPL +AA EG Y  +K L++  A+    D 
Sbjct: 128 HWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDH 187

Query: 701 WGNTPLDEGRMCGNKNLIKLLE 722
               P D      + ++++LL+
Sbjct: 188 MDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.2 bits (131), Expect = 4e-09
 Identities = 32/141 (22%), Positives = 51/141 (36%), Gaps = 31/141 (21%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 607
                  +E LI A AD N  D  G++ LH AA+    E +  L+    + + +D+   T
Sbjct: 99  RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDET 158

Query: 608 PLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY 667
           PL  A + G+  A+  L                               L N  +    D+
Sbjct: 159 PLFLAAREGSYEASKAL-------------------------------LDNFANREITDH 187

Query: 668 DLRTPLHVAASEGLYLMAKLL 688
             R P  VA+    + + +LL
Sbjct: 188 MDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 586 EIMTFLIQKGVDINLK-DNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAV 644
           ++++ L+ +G ++N   D  G T L  A ++    AA  L+  GA  N ++         
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 645 ARGDSDLLKRVL---SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRW 701
           A     +    +   +   + N R +D  TPL +AA   +  M + L+ A A +   D  
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 702 GNTPLDEGRMCGNKNLI 718
           G T L       N   +
Sbjct: 123 GKTALHWAAAVNNTEAV 139

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAA 621
           G++ ++ D DG++P+ LAA  G  E++ +LIQ+G  +   D   +T    A    +    
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 622 SLLVK 626
            +  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 17/68 (25%), Positives = 34/68 (50%)

Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL 717
            G + + +D D +TP+ +AA EG   +   L++ GASV   D   +T     +   + N+
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNI 269

Query: 718 IKLLEDAK 725
           + + +  +
Sbjct: 270 VDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 4e-11
 Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 25/203 (12%)

Query: 574 SPLHLA-ASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN 632
           SP+ L   + G   I   + ++ V+I        T L       +   +  L+   A   
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
                               K  ++ G D N  D D  TPL +A       +   L++AG
Sbjct: 58  --------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 97

Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKRNPTRKCTVF 752
           A     ++   + L +     +  ++  + ++   +                        
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 157

Query: 753 PFHPWDAKESRRHGIVLWIPQNI 775
                     +   +        
Sbjct: 158 QVASAKLLVEKGAKVDYDGAARK 180

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           AA  G +  +  LI+ GA     D    +   LA +  +  I+    +
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.9 bits (133), Expect = 5e-09
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL--------IQKGVD 597
               G     E + R   +        R+ LH  AS    E    L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 598 INLKDNFGNTPL 609
           +N  D   NTPL
Sbjct: 67  VNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 32/134 (23%)

Query: 559 IRAGADPNRTDYDGRSPLHLAASRGYEE-IMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
               A  +   Y GR+ LH AA       +   + +KG + + +D  G TP++ A + G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAA 677
                 L                               +  G      D    T   +A 
Sbjct: 234 IEVVMYL-------------------------------IQQGASVEAVDATDHTARQLAQ 262

Query: 678 SEGLYLMAKLLVEA 691
           +   + +  +    
Sbjct: 263 ANNHHNIVDIFDRC 276

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.2 bits (171), Expect = 5e-15
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL-EEVGIEE 446
           ++ KV + +         +   L    F  G+ I+ +G   D+ + +  G         E
Sbjct: 3   FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE 62

Query: 447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506
           N     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++       ++
Sbjct: 63  NEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 122

Query: 507 VLTNL 511
            +   
Sbjct: 123 NIQQY 127

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G+     ++   
Sbjct: 22  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGE-----MDVYV 76

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
             ++ + +    SFGE++++   P+  TV+     +L  ID+ S+  I+
Sbjct: 77  NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 125

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +IE +P  K        ++V  +  + +  GE I+ +G+  D  + V  G++      + 
Sbjct: 3   FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKG 62

Query: 448 G------TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF 501
                      ++       FGE++++ N P+  +       + L +D Q+F  ++    
Sbjct: 63  KSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCM 122

Query: 502 CDGRKVLTNLLQGKESDLRLKQL 524
              ++ +    +      +L  L
Sbjct: 123 EIMKRNIATYEE------QLVAL 139

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.0 bits (167), Expect = 3e-13
 Identities = 24/67 (35%), Positives = 32/67 (47%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT 607
             G    L+ LI+A  D N  DYDG +PLH AA  G EE    L++   D+   +  G T
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267

Query: 608 PLLEAIK 614
               A +
Sbjct: 268 AFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.6 bits (166), Expect = 4e-13
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 31/159 (19%)

Query: 530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
             +++   ++                + L     +  R    G + LH+AA++GY E++ 
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 590 FLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDS 649
            LIQ   D+N+KD  G TPL  A  +G + A  +L                         
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------------------------- 251

Query: 650 DLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 688
                 + N  D    +   +T   VA  + L  + +L 
Sbjct: 252 ------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.0 bits (154), Expect = 1e-11
 Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 10/182 (5%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKDNFGN 606
             G L   E LI  GA     + +G +PL +A     EE++   + + GVDI        
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174

Query: 607 TPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD 666
             +L   +   +      V+       +  G+ L  A A+G +++LK ++    D N +D
Sbjct: 175 RIMLRDARQWLNSGHINDVRHA-----KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD 229

Query: 667 YDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS 726
           YD  TPLH AA  G     ++LVE    +   ++ G T  D      +++++  LE+ + 
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD----VADEDILGYLEELQK 285

Query: 727 TQ 728
            Q
Sbjct: 286 KQ 287

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.0 bits (149), Expect = 6e-11
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 29/206 (14%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           +A   GD  ++  L+  GAD N  + DG + LH A      +++ FL++ G +IN  DN 
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVE-----------------------------E 635
           G  PL  A   G    A  L+ +GA +                                +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVD 165

Query: 636 AGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV 695
             +           D  + + S  I+         T LHVAA++G   + KLL++A   V
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 696 FPKDRWGNTPLDEGRMCGNKNLIKLL 721
             KD  G TPL      G +   ++L
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN 617
           +  +D  +    A S G  E +  L+++G DIN  +  G T L +A    N
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL--IQKGVDI 598
           AA+ G       L+    D    +  G++   +A     E+I+ +L  +QK  ++
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 29/103 (28%), Positives = 44/103 (42%)

Query: 635 EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGAS 694
           + G+    A + GD++ + R+L  G D N  + D  T LH A  +    M K LVE GA+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 695 VFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQ 737
           +   D  G  PL     CG  ++ + L    +        G  
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%)

Query: 666 DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL 720
            +D       A S G       L+E GA +   +  G T L +  +  N +++K 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 3/137 (2%)

Query: 573 RSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLN 632
           +    L    G E  +   + K     +K +      L A   G+      L++ GA +N
Sbjct: 9   KRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 633 V--EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE 690
               +  + L  A    + D++K ++ NG + N  D +   PLH AAS G   +A+ L+ 
Sbjct: 68  YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS 127

Query: 691 AGASVFPKDRWGNTPLD 707
            GA V   +  G+TPLD
Sbjct: 128 QGAHVGAVNSEGDTPLD 144

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 4e-13
 Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 44/218 (20%)

Query: 546 AAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A   G+L      +    + G + +  +   ++PLHLA       ++  L+  G      
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 602 DNFGNTPLLEAIKYGNDGAASLLVKEGA-------------------------------- 629
           D  G T    A ++ +      L+   A                                
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 630 --------SLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 681
                   +++++   S L  AV      +++ +L +G + N + Y   + LH A+  GL
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK 719
             + + LV +GA    K+   +TPL   R     ++++
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 1e-09
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 571 DGRSPLHLAASRGYEEIMTFLI----QKGVDINLKDNFGNTPLLEAIKY 615
           DG +PLH+A  +G    +  L+    Q G ++++ +N   TPL  A+  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 31/153 (20%), Positives = 48/153 (31%), Gaps = 27/153 (17%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G+TPL  A+  GN  A   L                           +      G + + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHRL---------------------------VNLFQQGGRELDI 35

Query: 665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            +   +TPLH+A    L  + +LLV AGAS    DR G T         +   ++ L D+
Sbjct: 36  YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

Query: 725 KSTQLLEFPHGFQDTADKRNPTRKCTVFPFHPW 757
            +   L+      D     +             
Sbjct: 96  AAPGTLDLEARNYDGLTALHVAVNTECQETVQL 128

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +VPLF+      ++ I  RL    F     ++ +G+ V+++ F+  G+LE V  +   
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 449 TEDYVSYLHPN-SSFGEVSILCNIPQP---------YTVQVCELCRLLRIDKQSFTNIID 498
           +  Y   L       G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 499 IY 500
            +
Sbjct: 128 QF 129

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 62.1 bits (150), Expect = 4e-12
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +  VPLF+      + +IV  L       G VI   G   D+++FV  G         + 
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG-------SVSV 65

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
                  L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 509 TNLLQ 513
              L+
Sbjct: 126 KTALE 130

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (145), Expect = 3e-11
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCL 436
           R+     +    ++ V  F+      + QI +  + E    G  +  +G++    Y V  
Sbjct: 14  RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLA 73

Query: 437 GKLEEVGI--EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
           G L+        +     +  L   ++FGE  IL N P+  T+   E   LLRI+++ F 
Sbjct: 74  GSLDVKVSETSSHQDAVTICTLGIGTAFGES-ILDNTPRHATIVTRESSELLRIEQEDFK 132

Query: 495 NIIDIY 500
            + + Y
Sbjct: 133 ALWEKY 138

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 59.5 bits (143), Expect = 4e-11
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           ++   + E    +   +          +  +G++ + L+++  GK++ +     G     
Sbjct: 8   VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67

Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
             + P   FG            T    E  ++L I  ++   ++       R  L  L +
Sbjct: 68  RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127

Query: 514 GKESDLRLKQLQSDIT 529
                  L   +    
Sbjct: 128 ------ELGYAERRTV 137

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 57.9 bits (139), Expect = 1e-10
 Identities = 20/131 (15%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458
           +   +   +   H   +     ++ +G   + LY++  G +  +  +E G E  +SYL+ 
Sbjct: 2   TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61

Query: 459 NSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKES 517
               GE+ +     +    V+    C +  I  + F  +I +      ++   + +    
Sbjct: 62  GDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR---- 117

Query: 518 DLRLKQLQSDI 528
             RL+     +
Sbjct: 118 --RLQVTSEKV 126

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 257 FREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316
           F  I    S+  S+Y + VT+ TVGYGD        M F +  +   +   A  +  +  
Sbjct: 20  FHFIEGE-SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE 78

Query: 317 LI 318
            +
Sbjct: 79  FL 80

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 3e-10
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 40/161 (24%)

Query: 545 SAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAA---SRGYEEIMTFLIQKG 595
            A    D++ L      G D               + LHLA     R    I+ FL+Q  
Sbjct: 12  EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 71

Query: 596 VDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRV 655
            +++ +   G+T L       N     LL++  A                          
Sbjct: 72  GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA-------------------------- 105

Query: 656 LSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF 696
                     +    TPL +A         +LL +A +  F
Sbjct: 106 -----SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 31/173 (17%), Positives = 53/173 (30%), Gaps = 37/173 (21%)

Query: 571 DGRSPLHL---AASRGYEEIMTFLIQKGVDINLK------DNFGNTPLLEAIKYGNDGAA 621
           D  + LH    A        +      GVD+  K           T L  A++  +    
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD---- 57

Query: 622 SLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGL 681
                                   R    ++  ++ N  + + +     T LH       
Sbjct: 58  ------------------------RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 682 YLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPH 734
               KLL+   AS+   +  G TPLD  +   +++  +LL  A S +     H
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.8 bits (135), Expect = 5e-10
 Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 3/154 (1%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNT--PLLEAIKYGNDGAASLLVKEG 628
           D    L  AA  G ++ +  L+  G      D  G +   L     + +     L     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 629 ASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL 688
                +   + L  A + G +++++ +L +G D N +D    T LH A       + +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 689 VEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLE 722
           ++ GA V  + ++  T  D     GN++L ++L+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 7e-07
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 3/145 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  G   ++  L+  GA        G SPLHLAA  G+      L++ GV  + +    
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 606 NTPLLEAIKYGNDGAASLLVKEGASLNVEEAG--SFLCTAVARGDSDLLKRVLSNGIDPN 663
            TPL  A   G+     +L+K GA +N ++    + L  A      ++++ ++  G D +
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLL 688
           T+    +T   ++   G   +A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 1/98 (1%)

Query: 668 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST 727
           DL   L  AA  G     ++L+  GA     D  G +PL      G+ +  ++L  A  +
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 728 QLLEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRH 765
           +               +      V       A  + + 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 6e-10
 Identities = 42/201 (20%), Positives = 70/201 (34%), Gaps = 13/201 (6%)

Query: 546 AAYHGD----LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  H +    +  +  +    A  N  +   ++PLHLA      EI   L+  G D  L+
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 602 DNFGNTPL--------LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLK 653
           D  GNTPL        L ++        +  +            + L  A   G   +++
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 654 RVLSNG-IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
            ++S G         + RT LH+A       +  LL++ GA V      G +P       
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 713 GNKNLIKLLEDAKSTQLLEFP 733
            +  + + L       L   P
Sbjct: 189 PSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 3e-09
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 571 DGRSPLHLAASRGY----EEIMTFLIQKGVDINLKDNFGNTPLLEAIKY 615
           DG S LHLA          E++  +      +N ++N   TPL  A+  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 668 DLRTPLHVAASEG----LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMC 712
           D  + LH+A           + + +    A +  ++    TPL    + 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 27/72 (37%)

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNT 664
           G++ L  AI +                                  +++++V  +    N 
Sbjct: 2   GDSFLHLAIIHEEKALTM---------------------------EVIRQVKGDLAFLNF 34

Query: 665 RDYDLRTPLHVA 676
           ++   +TPLH+A
Sbjct: 35  QNNLQQTPLHLA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 2e-09
 Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 546 AAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNF 604
           A    + ++++ L+ +  +   + D DGR PLH + S    EI +FL+ K  ++NL D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 605 GNTPLLEAIKYGNDGAASLLVKEGASLNVEEAG-------SFLCTAVARGDSDLLKRVLS 657
            ++         + G   ++          +         + L  AV +   ++ + ++ 
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 658 NGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG-ASVFPKDRWGNTPLDEGRMCGNKN 716
           NG     +D   + PLH AAS G   + +LL   G ++V  +D+ G TPL      G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 717 LIKLL 721
              LL
Sbjct: 187 AAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 6e-09
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 575 PLHLAASRGYEEIMTFLI-QKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 633
           PLH A        +  L+  K   +  KD  G  PL  ++ +      S L+ +  ++N+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 634 EEAGSFLCTAV-------ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAK 686
           ++                   +            D N       T LH+A  +  + +++
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 687 LLVEAGASVFPKDRWGNTPLDEGRMC 712
            L+E GASV  KD++   PL      
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASV 148

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 33/137 (24%), Positives = 46/137 (33%), Gaps = 34/137 (24%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAIKYG 616
           LI  GA     D   + PLH AAS G  +++  L   G   +N +D  G TPL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 617 NDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVA 676
           +  AA LLV                                 G + +  D        VA
Sbjct: 184 HGDAAVLLV------------------------------EKYGAEYDLVDNKGAKAEDVA 213

Query: 677 ASEGLYLMAKLLVEAGA 693
            +E    + K  +    
Sbjct: 214 LNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           + + GA+ +  D  G     +A +   E++  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 640 LCTAVARGDSDLLKRVL-SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPK 698
           L  A    +   ++ +L S       +D D R PLH + S   + +   L+    +V   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 699 DRWGNTPLDEGRMCGNKN 716
           D   ++      +  +  
Sbjct: 64  DYPDDSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 1/105 (0%)

Query: 671 TPLHVAASEG-LYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQL 729
            PLH A  E   + + +LL    + +  KD+ G  PL          +   L        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 730 LEFPHGFQDTADKRNPTRKCTVFPFHPWDAKESRRHGIVLWIPQN 774
           L+                   +        +  +     +     
Sbjct: 62  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 106

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 35/139 (25%), Positives = 46/139 (33%), Gaps = 34/139 (24%)

Query: 584 YEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTA 643
           + E+  FLI+ G  + +KD F   PL  A   G+     LL   G               
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--------------- 161

Query: 644 VARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA-GASVFPKDRWG 702
                              N +D    TPL  A +EG    A LLVE  GA     D  G
Sbjct: 162 ---------------KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 703 NTPLDEGRMCGNKNLIKLL 721
               D   +  N+ + K  
Sbjct: 207 AKAED---VALNEQVKKFF 222

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 2e-09
 Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 2/153 (1%)

Query: 574 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 633
           + L  AA+RG  E +T L+Q  V++N ++ FG T L        + A  LL++       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 634 EEAG-SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEG-LYLMAKLLVEA 691
           +  G + +  A   G  D L+ +L    D N  D +   PLH+AA EG L ++  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA 724
            ++V  ++  G+T  D  R+ G   ++ L++  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 4/150 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFG 605
           AA  GDL QL  L++   + N  +  GR+ L +      E     L++       KD  G
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL-KDRTG 66

Query: 606 NTPLLEAIKYGNDGAASLLVK---EGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDP 662
              + +A + G       L++   +    + E        A       +   V     + 
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 663 NTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
             R++   T   +A   G   +  L+   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 637 GSFLCTAVARGDSDLLKRVLSNGIDPNTRDYD 668
           G+ L +A ARGD + L  +L N ++ N ++  
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGF 33

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRL-HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +  +      S+    ++   L  E     G V+  +G      Y +     +       
Sbjct: 12  LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIIL----KGSVNVVI 67

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VCELCRLLRIDKQSFTNIIDIY 500
             +  V  LH    FG+++++ + P+  ++    + C  LR+DK+ F  I+   
Sbjct: 68  YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDV 121

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 8e-09
 Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 575 PLHLAASRGYEEIMTFLIQK-GVDINLKDNFGNTPLLEAIKYGNDGAASLLVK-EGASLN 632
            L  AA+RG  + +  L+ +  V  +  + FG T L   +      A  LL +    ++ 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 633 VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAG 692
                S +  A   G  D LK ++ +G D N  D     P+H+A  EG +      + A 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAE 123

Query: 693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED 723
           + +  +D  G TPL+     G ++L+ +L+ 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 545 SAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDN 603
            AA  GD+ ++  L+ R    P+  +  G++ L +         +  L Q         +
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 604 FGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPN 663
             +     A     D    L+         +  G+       +     +   L+   D +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 664 TRDYDLRTPLHVAASEGLYLMAKLLVE 690
            RD    TPL +A   G   +  +L  
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 53.1 bits (126), Expect = 8e-09
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
           +T++   + ++PLF+G   E    I+  ++LH      GE I++ GN   QL F+  G++
Sbjct: 2   ETMF-DTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60

Query: 440 EEVGIEENGTEDYVSYLHPNSSFGEVS-ILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
             V   +      +  +         S    N     +         + I K    + + 
Sbjct: 61  SIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLF 120

Query: 499 IYFCDGRKVLTNLLQGKESDLRLKQLQSDI 528
            Y       +  +        R + L S +
Sbjct: 121 RYDIFRLNYMNIVSN------RAQNLYSRL 144

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.3 bits (122), Expect = 2e-08
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460
           + +++++   H   +     I+  G+  + L+F+  G +  +  +++G E  + YL+   
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 461 SFGEVSIL----CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE 516
            FGE+ +         +   V+    C +  I    F  +          + + +     
Sbjct: 63  FFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD--- 119

Query: 517 SDLRLKQLQSDI 528
              RL++    +
Sbjct: 120 ---RLRKTTRKV 128

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
              +Y  +++ SV T TTVGYGD++ V L      ++ +   +     +   +    V  
Sbjct: 37  QLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR 96

Query: 322 SKTEK 326
            +  +
Sbjct: 97  EQERR 101

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320
              S+  + + SV TM T+GYG +  +       + +     M+  A     + A   +
Sbjct: 57  RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 574 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV 633
           + L  ++  G  +++  +I +  D +L ++ G T L  A+  G+      LV+ G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 634 EEAG--SFLCTAVARGDSDLLKRVLSNGIDPNTRDY-DLRTP--LHVAASEGLYLMAKLL 688
            ++   + L  A +  +  + K ++ +G       Y D++T         EG    ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 689 VEAGA 693
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 556 EGLIRAGADPN-RTDYDGRSPLHL--AASRGYEEIMTFLIQKGVDI 598
           + L+ +GA     T  D ++          GY +   FL      +
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320
            ++ + + SV T+ TVGYGD+H   +       + +   M   A   G + A   +
Sbjct: 61  GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462
           + +++       F  GE++  + + ++ +  +  G L+   + ENG    +  + P    
Sbjct: 3   LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62

Query: 463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRL 521
               I  + P  P  V   E  ++L I K+ F +++          L ++ +        
Sbjct: 63  ASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE------HF 116

Query: 522 KQLQSDITF 530
           + +   + F
Sbjct: 117 RVVSEKLFF 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE 634
            L  AA+RG  E +  L++ G + N  +++G  P+   +      A  LL+        +
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 635 EAGSFLCTAVARGDSD--LLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA 691
            A        A  +     L  +   G   + RD   R P+ +A   G   +A+ L  A
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Length = 139

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460
           E +           F  G  ++  G  +  + F+  GK++   I E+G+E  + Y   NS
Sbjct: 15  EKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNS 74

Query: 461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLR 520
             G++    N      ++    C      ++S   +         ++  N L       +
Sbjct: 75  LIGKLYPTGNNIYATAMEPTRTC---WFSEKSLRTVFRTDEDMIFEIFKNYLT------K 125

Query: 521 LKQLQ---SDITFH 531
           +       +++  +
Sbjct: 126 VAYYARQVAEMNTY 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	821
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.84
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.81
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.77
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.77
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.76
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.75
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.75
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.74
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.73
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.73
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.71
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.71
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.65
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.64
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.61
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.6
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.59
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.56
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.49
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.47
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.42
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.15
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.61
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.45
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	93.62

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-34  Score=293.60  Aligned_cols=194  Identities=24%  Similarity=0.234  Sum_probs=178.7

Q ss_pred             chhhhHhhhHHHHhhcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 003425          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGAD---PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLL  610 (821)
Q Consensus       534 ~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~  610 (821)
                      .-+.+|.||||.||..|+.+++++|++.|++   ++.+|..|.||||+||..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            3467899999999999999999999999988   6678899999999999999999999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHhcCCCCC-------------------------------------------------cccccchhh
Q 003425          611 EAIKYGNDGAASLLVKEGASLN-------------------------------------------------VEEAGSFLC  641 (821)
Q Consensus       611 ~A~~~~~~~~v~~Ll~~~~~~~-------------------------------------------------~~~~~t~l~  641 (821)
                      +|+..++.+++++|++.+....                                                 ..+|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9999999999999987542210                                                 123679999


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Q 003425          642 TAVARGDSDLLKRVLSNGIDPNTR-DYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKL  720 (821)
Q Consensus       642 ~A~~~~~~~~v~~Ll~~g~~~~~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~  720 (821)
                      +|+..++.+++++|+++|++.+.. +..|.||||+||..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999999999998864 5789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccc
Q 003425          721 LEDAKST  727 (821)
Q Consensus       721 Ll~~~a~  727 (821)
                      |+++||+
T Consensus       244 Ll~~Ga~  250 (255)
T d1oy3d_         244 LRAHGAP  250 (255)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-33  Score=276.42  Aligned_cols=215  Identities=27%  Similarity=0.374  Sum_probs=186.9

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~  586 (821)
                      ++..+...++.+.....+... ...++..|..|.||||+||..|+.++++++++.+.+....+..+.++++.|+..|+.+
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE   84 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            344455555544444444433 3346678889999999999999999999999999998888889999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCccc--ccchhhHHHhcCCHHHHHHHHHCCCCCCC
Q 003425          587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEE--AGSFLCTAVARGDSDLLKRVLSNGIDPNT  664 (821)
Q Consensus       587 ~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  664 (821)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  |.||||.|+..++.+++++|++.|.+++.
T Consensus        85 i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~  164 (223)
T d1uoha_          85 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI  164 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             hhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeee
Confidence            9999999999999999999999999999999999999999998887654  78999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 003425          665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLED  723 (821)
Q Consensus       665 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~  723 (821)
                      +|..|+||||.|+..|+.+++++|+++|+|++.+|.+|+||||+|+ .|+.++++.|++
T Consensus       165 ~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         165 QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             ccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9999999999999999999999999999999999999999999884 689999999885

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.5e-31  Score=266.02  Aligned_cols=204  Identities=31%  Similarity=0.351  Sum_probs=193.3

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGN  617 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~  617 (821)
                      +++.|+.+|..|+++.|+.+++. +.+++.+|..|+||||+||..|+.+++++|++.+.+....+..+.++++.|+..++
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR   82 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccc
Confidence            35789999999999999888755 67899999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Q 003425          618 DGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASV  695 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~  695 (821)
                      .+++++|+++|++++..  +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|+++
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i  162 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST  162 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee
Confidence            99999999999998875  4889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       696 ~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      +.+|.+|+||||+|+..|+.+++++|+++|++++..+..|.+|.+.+
T Consensus       163 ~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999887654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=265.02  Aligned_cols=194  Identities=23%  Similarity=0.208  Sum_probs=174.3

Q ss_pred             hHhhhHHHHhhcCCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          538 ELALKVNSAAYHGDLY----QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~----~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      +|.||||+|+..|+.+    +++.+...|+++|.+|.+|+||||+||..|+.+++++|+++|++++.+|..|.||||.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            5889999999999964    455666789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCc--------ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCcHHH
Q 003425          614 KYGNDGAASLLVKEGASLNV--------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRD-YDLRTPLHVAASEGLYLM  684 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~--------~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~T~Lh~A~~~g~~~~  684 (821)
                      ..++.++++.|++.+.....        .++.||+|.|+..++.+++++|+..|++++..+ .+|.||||+|++.|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            99999999999998765433        247899999999999999999999999998765 579999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccccccc
Q 003425          685 AKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLE  731 (821)
Q Consensus       685 v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~  731 (821)
                      +++|+++|+|++.+|.+|+||||+|+..++.+++++|.+.+.+....
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~  207 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM  207 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSS
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence            99999999999999999999999999999999999999998765433

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.2e-30  Score=269.03  Aligned_cols=187  Identities=22%  Similarity=0.291  Sum_probs=169.3

Q ss_pred             hHhhhHHHHhhcCCHHHHHHH--------HHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          538 ELALKVNSAAYHGDLYQLEGL--------IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~L--------l~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      .|.||||+||..|+.++|+.|        ++.|+|+|.+|.+|+||||+|+..|+.+++++|+++|+|++.+|..|.|||
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            589999999999999988776        567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCC---C----------------------------------------------CCcccccchh
Q 003425          610 LEAIKYGNDGAASLLVKEGA---S----------------------------------------------LNVEEAGSFL  640 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~---~----------------------------------------------~~~~~~~t~l  640 (821)
                      ++|+..++.++++.+...+.   .                                              .....|.|+|
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999988887765320   0                                              0012367899


Q ss_pred             hHHHhcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 003425          641 CTAVARGDSDLLKRVL-SNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIK  719 (821)
Q Consensus       641 ~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~  719 (821)
                      |.++..++.++++.++ ..+.+.+.+|..|.||||+||..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.++++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999998755 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 003425          720 LLEDA  724 (821)
Q Consensus       720 ~Ll~~  724 (821)
                      +|++.
T Consensus       272 lL~~c  276 (277)
T d2fo1e1         272 IFDRC  276 (277)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.1e-29  Score=263.92  Aligned_cols=206  Identities=28%  Similarity=0.306  Sum_probs=189.0

Q ss_pred             hhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 003425          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYG  616 (821)
Q Consensus       537 ~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~  616 (821)
                      .++.|+|+.||..|++++|+.|+++|+|+|..|.+|.||||+|+.+|+.+++++|+++|++++..+..+.+||+.|+..+
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHC-C--------------------------CCCCCCCC
Q 003425          617 NDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSN-G--------------------------IDPNTRDY  667 (821)
Q Consensus       617 ~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~-g--------------------------~~~~~~d~  667 (821)
                      +.++++.|+++|+..+..  ++.++++.|+..++.+.++.++.. |                          .+....+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence            999999999999887654  578999999999999888888753 2                          23455678


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          668 DLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       668 ~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      .|.||||.|+..|+.++++.|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++..+..|.++.+.+
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999988887765543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-29  Score=250.60  Aligned_cols=203  Identities=26%  Similarity=0.289  Sum_probs=184.7

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCCCcHHHHHHHc
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL---KDNFGNTPLLEAIKY  615 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~tpL~~A~~~  615 (821)
                      ++|||+||..|+.+.++.|++. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+|+|+|+..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4799999999999999999975 578999999999999999999999999999999999874   567899999999999


Q ss_pred             CChHHHHHHHhcCCCCCc----ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          616 GNDGAASLLVKEGASLNV----EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       616 ~~~~~v~~Ll~~~~~~~~----~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      +..++++.++..+...+.    ..+.++++.++..++.++++.|++.|.+.+..|..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence            999999999998876544    2467899999999999999999999999999999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-ccccccccCCCCCCccccc
Q 003425          692 G-ASVFPKDRWGNTPLDEGRMCGNKNLIKLLED-AKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       692 g-a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~-~~a~~~~~~~~~~~~~~~~  742 (821)
                      | .+++.+|.+|+||||+|+..|+.+++++|++ .|++++..+..|.++.+.+
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A  213 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  213 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHH
Confidence            7 6889999999999999999999999999996 5999999999888877643

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.3e-29  Score=244.89  Aligned_cols=187  Identities=22%  Similarity=0.455  Sum_probs=174.6

Q ss_pred             chhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc-cccHHHHHhhCcHHHHHHHHHhhhhhhccccccccCCCH
Q 003425          322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSS  400 (821)
Q Consensus       322 ~~~~~~~~~~~~~~~~m~~~~lp~~l~~ri~~y~~~~~~~-~~~~~~~l~~lp~~L~~~i~~~~~~~~l~~~~~f~~~~~  400 (821)
                      +..++|+++++.+++||+.+++|.+|+.||++||+|.|++ ..++.++++.||++|+.++..+++.++++++|+|+++++
T Consensus         2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~   81 (193)
T d1q3ea_           2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADP   81 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCH
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhH
Confidence            4678999999999999999999999999999999999975 467889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCcceEEEEe
Q 003425          401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC  480 (821)
Q Consensus       401 ~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~~~~~~a~  480 (821)
                      +++..|+..+++..|.||++|+++|+.++.+|||.+|.|+++.   +++.  ...+++|++|||.+++.+.+++++++|.
T Consensus        82 ~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~---~~~~--~~~l~~G~~fGe~~~~~~~~~~~~~~a~  156 (193)
T d1q3ea_          82 NFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT---KGNK--EMKLSDGSYFGEICLLTRGRRTASVRAD  156 (193)
T ss_dssp             HHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC----CCC--EEEECTTCEECHHHHHHCSBCSSEEEES
T ss_pred             HHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec---CCcc--eeeeccceeeeeeeccCCCcccccceec
Confidence            9999999999999999999999999999999999999999876   2222  4568999999999999999999999999


Q ss_pred             cceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       481 ~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++|+++.|++++|.++++.+|++...+...+..
T Consensus       157 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~  189 (193)
T d1q3ea_         157 TYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  189 (193)
T ss_dssp             SCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             CceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999998877654

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=255.74  Aligned_cols=195  Identities=25%  Similarity=0.279  Sum_probs=146.9

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCC------------------
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDI------------------  598 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------  598 (821)
                      ++.|+||.|+++|+.++|++|+++|+|+|.++ ..|+||||+|+..|+.+++++|++.|.+.                  
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            34566666666666666666666666665443 34666666666666666666666544322                  


Q ss_pred             ------------------------------------------------CC----------CCCCCCcHHHHHHHcCChHH
Q 003425          599 ------------------------------------------------NL----------KDNFGNTPLLEAIKYGNDGA  620 (821)
Q Consensus       599 ------------------------------------------------~~----------~~~~g~tpL~~A~~~~~~~~  620 (821)
                                                                      +.          .+..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                            21          13357888888888888888


Q ss_pred             HHHHHhc-CCCCCccc--ccchhhHHH----hcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-cC
Q 003425          621 ASLLVKE-GASLNVEE--AGSFLCTAV----ARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AG  692 (821)
Q Consensus       621 v~~Ll~~-~~~~~~~~--~~t~l~~A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g  692 (821)
                      +++|+++ |++++..+  +.++.+.+.    ..+..+++++|+++|++++.+|..|.||||.|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            8888865 67776654  444444332    2334568899999999999999999999999999999999999998 49


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccC
Q 003425          693 ASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEF  732 (821)
Q Consensus       693 a~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~  732 (821)
                      ++++.+|.+|.||||+|+..|+.+++++|+++||+++.++
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            9999999999999999999999999999999999998765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.5e-29  Score=272.06  Aligned_cols=234  Identities=22%  Similarity=0.235  Sum_probs=195.3

Q ss_pred             HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425          508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI  587 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~  587 (821)
                      |+.+...++.+.....++++.  +++..|..|.||||+||..|+.+++++|+++|+++|.++.+|.||||+|+..|+.++
T Consensus         4 L~~Aa~~g~~~~v~~Ll~~g~--~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           4 LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC--CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHCcCHHHHHHHHHCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            344455555555555565544  355677889999999999999999999999999999999999999999987776654


Q ss_pred             ------------------------------------------------------------------HHHHHHcCCCCCCC
Q 003425          588 ------------------------------------------------------------------MTFLIQKGVDINLK  601 (821)
Q Consensus       588 ------------------------------------------------------------------v~~Ll~~g~~~~~~  601 (821)
                                                                                        +++|+++|++++..
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~  161 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  161 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence                                                                              45566677778888


Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc------------------------------------------------
Q 003425          602 DNFGNTPLLEAIKYGNDGAASLLVKEGASLNV------------------------------------------------  633 (821)
Q Consensus       602 ~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~------------------------------------------------  633 (821)
                      +..|.+|||+|+..|+.+++++|+++|++++.                                                
T Consensus       162 ~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  241 (408)
T d1n11a_         162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE  241 (408)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHh
Confidence            88999999999999999999999998877642                                                


Q ss_pred             --------------------ccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC
Q 003425          634 --------------------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA  693 (821)
Q Consensus       634 --------------------~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga  693 (821)
                                          ..|.+|++.|+..++.+++++|+++|++++..+..+.||||.|+..++.++++.++++|+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~  321 (408)
T d1n11a_         242 GHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA  321 (408)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred             CcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccc
Confidence                                113346777777788888888888888888888888899999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          694 SVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       694 ~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      ++|.+|.+|.||||+|++.|+.+++++|+++||+++..+..|.++.+.+.
T Consensus       322 ~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~  371 (408)
T d1n11a_         322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK  371 (408)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999988876443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-28  Score=244.63  Aligned_cols=216  Identities=23%  Similarity=0.166  Sum_probs=187.1

Q ss_pred             HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCC
Q 003425          508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN---RTDYDGRSPLHLAASRGY  584 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n---~~d~~g~t~L~~A~~~g~  584 (821)
                      ++.+....+.+.....+... ...++..+.+|.||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+|+..+.
T Consensus         4 Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~   82 (229)
T d1ixva_           4 LHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGN   82 (229)
T ss_dssp             HHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccc
Confidence            44444444444444444332 23466788899999999999999999999999999987   457789999999999999


Q ss_pred             HHHHHHHHHcCCCC--CCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC-
Q 003425          585 EEIMTFLIQKGVDI--NLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG-  659 (821)
Q Consensus       585 ~~~v~~Ll~~g~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g-  659 (821)
                      .++++.++..+.+.  ...+..+.||++.++..++.++++.|++.|.+.+..  .|.||||.|+..|+.+++++|++.| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~  162 (229)
T d1ixva_          83 LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK  162 (229)
T ss_dssp             HHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccc
Confidence            99999999987754  446678999999999999999999999999888764  4789999999999999999999987 


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Q 003425          660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVE-AGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKST  727 (821)
Q Consensus       660 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~  727 (821)
                      .+++.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|+   +.+++++|+++|+|
T Consensus       163 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            6889999999999999999999999999997 59999999999999999998   45899999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=251.00  Aligned_cols=193  Identities=26%  Similarity=0.259  Sum_probs=170.2

Q ss_pred             hchHHHHHHHhcCCcchhhhhhhccccccc-ccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          502 CDGRKVLTNLLQGKESDLRLKQLQSDITFH-ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA  580 (821)
Q Consensus       502 ~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~  580 (821)
                      +.+...++.+............++++.+.. ++.++..|.||||+||..|+.++++.|++.|++++.+|.+|.||||+|+
T Consensus         7 ~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC   86 (255)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhh
Confidence            345567788888777766666666554433 5677888999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCC-----------------------------------------------CCCCCCCCCCcHHHHHH
Q 003425          581 SRGYEEIMTFLIQKGV-----------------------------------------------DINLKDNFGNTPLLEAI  613 (821)
Q Consensus       581 ~~g~~~~v~~Ll~~g~-----------------------------------------------~~~~~~~~g~tpL~~A~  613 (821)
                      ..++.+++++|++.+.                                               +++.+|..|.||||+|+
T Consensus        87 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~  166 (255)
T d1oy3d_          87 RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV  166 (255)
T ss_dssp             TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHH
T ss_pred             ccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccc
Confidence            9999999999876432                                               23456788999999999


Q ss_pred             HcCChHHHHHHHhcCCCCCcc---cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          614 KYGNDGAASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~---~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      ..++.+++++|++++++.+..   .|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       167 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             cccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999888753   48899999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC
Q 003425          691 AGAS  694 (821)
Q Consensus       691 ~ga~  694 (821)
                      +||+
T Consensus       247 ~Ga~  250 (255)
T d1oy3d_         247 HGAP  250 (255)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9997

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.6e-28  Score=244.00  Aligned_cols=206  Identities=20%  Similarity=0.203  Sum_probs=173.7

Q ss_pred             hHhhhHHHHhhcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 003425          538 ELALKVNSAAYHGDLYQLEGLIR----AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAI  613 (821)
Q Consensus       538 ~~~~~L~~A~~~g~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~  613 (821)
                      +|.||||.||..|+.++++.|++    .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+..|.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            68999999999999999999874    79999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHhcCCCCC------cccccchhhHHHhcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCcHHHHH
Q 003425          614 KYGNDGAASLLVKEGASLN------VEEAGSFLCTAVARGDSDLLKRVLSNGIDPN-TRDYDLRTPLHVAASEGLYLMAK  686 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~------~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~T~Lh~A~~~g~~~~v~  686 (821)
                      ..++.++++.+........      .....++++.+.........+.|.....+.. ..+..|.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999999988876543221      1235677888888888888888887766544 34456788888888888888888


Q ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcccccc
Q 003425          687 LLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       687 ~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      .++++|.+.+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|.+.+.
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            888888888888888888888888888888888888888888888888888876543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.9e-28  Score=253.15  Aligned_cols=217  Identities=27%  Similarity=0.377  Sum_probs=190.1

Q ss_pred             HHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHH
Q 003425          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (821)
Q Consensus       507 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~  586 (821)
                      .+..++..++.+....+++++.+  ++..|.+|.||||+|+..|+.+++++|+++|++++..+..+.|||+.|+..++.+
T Consensus        43 ~l~~A~~~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~  120 (291)
T d1s70b_          43 VFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD  120 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccc
Confidence            34555555666666666666544  5677888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhc-CCCC----------------------------Cccccc
Q 003425          587 IMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKE-GASL----------------------------NVEEAG  637 (821)
Q Consensus       587 ~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~~~----------------------------~~~~~~  637 (821)
                      +++.|+++|+..+..|..|.+|+++|+..++.+.++.++.. +.++                            ....|.
T Consensus       121 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             hhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence            99999999999999999999999999999999998888753 2221                            224578


Q ss_pred             chhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 003425          638 SFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNL  717 (821)
Q Consensus       638 t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i  717 (821)
                      ||||.|+..|+.++++.|+++|+++|.+|.+|+||||+||..|+.++|++|+++|||++.+|..|+||||+|++    ++
T Consensus       201 t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e----~~  276 (291)
T d1s70b_         201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE----DI  276 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS----GG
T ss_pred             ChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----HH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999975    67


Q ss_pred             HHHHHhcccccc
Q 003425          718 IKLLEDAKSTQL  729 (821)
Q Consensus       718 ~~~Ll~~~a~~~  729 (821)
                      +++|.+.+...+
T Consensus       277 ~~~L~~~~~~~~  288 (291)
T d1s70b_         277 LGYLEELQKKQN  288 (291)
T ss_dssp             GHHHHHHHHHTT
T ss_pred             HHHHHHHhhhcc
Confidence            888877665544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.5e-27  Score=254.12  Aligned_cols=200  Identities=26%  Similarity=0.344  Sum_probs=182.0

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      .||||.||..|+.++|++|++.|+++|..|..|+||||+||..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCc-----------------------------------ccccchhhHHHhcCCHHHHHHHHHCCCCCCC
Q 003425          620 AASLLVKEGASLNV-----------------------------------EEAGSFLCTAVARGDSDLLKRVLSNGIDPNT  664 (821)
Q Consensus       620 ~v~~Ll~~~~~~~~-----------------------------------~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~  664 (821)
                      ++++|+..+.+...                                   ..+.++++.|+..++.++++.|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            99999987654321                                   2356789999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCcc
Q 003425          665 RDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDT  739 (821)
Q Consensus       665 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~  739 (821)
                      .+.+|.+|||.|+..|+.+++++|+++|++++..+..|.||+|++....+.++...|+..+.........+.++.
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l  235 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPL  235 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHH
Confidence            999999999999999999999999999999999999999998888888888888888888877777666665543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=2.3e-26  Score=225.97  Aligned_cols=187  Identities=25%  Similarity=0.330  Sum_probs=173.4

Q ss_pred             hhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHH
Q 003425          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKDNFGNTPLLEAI  613 (821)
Q Consensus       535 ~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~tpL~~A~  613 (821)
                      .|.+|.||||+||..|+.++++.|++.|+++|..+..+.++++.++..++............. .......|.++.+.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999999999999999999999999999999999999999887777765433 3344567889999999


Q ss_pred             HcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          614 KYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       614 ~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      ........+.|.+.+++++..  .|.||++.|+..+..++++.+++++.+++..|..|.||||+||..|+.+++++|+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHC
Confidence            999999999999999988765  478999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          692 GASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       692 ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      |||++.+|..|+||||+|+.+|+.++|++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.9e-27  Score=216.92  Aligned_cols=153  Identities=29%  Similarity=0.394  Sum_probs=123.7

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHH
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA  620 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~  620 (821)
                      +|||.||..|+.++|+.|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+++|++++..+..|.+|++.++..++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            6788888888888888888888888888888888888765 678888888888888888888888888877777776666


Q ss_pred             HHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCC-CCCCCC
Q 003425          621 ASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGA-SVFPKD  699 (821)
Q Consensus       621 v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga-~~~~~d  699 (821)
                      ++.|++.                               +.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|
T Consensus        82 ~~~l~~~-------------------------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          82 LQTLLEF-------------------------------QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             HHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             ccccccc-------------------------------cccccccccccccccccccccccccccccccccccccccccC
Confidence            6665554                               45667777888888888888888888888888876 788888


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcc
Q 003425          700 RWGNTPLDEGRMCGNKNLIKLLEDAK  725 (821)
Q Consensus       700 ~~g~t~l~~A~~~~~~~i~~~Ll~~~  725 (821)
                      .+|+||||+|+..|+.+++++|+++|
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88888888888888888888888876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-26  Score=211.49  Aligned_cols=151  Identities=26%  Similarity=0.410  Sum_probs=128.2

Q ss_pred             hhHHHHhhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          541 LKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~-g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      .+|+.||..|++++|+.|++. ++++|..|..|+||||+|+ .|+.+++++|++++++++..+..|.+|++.|+..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            458899999999999998875 7788888899999999876 47888899999998888888888888888887777766


Q ss_pred             HHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC
Q 003425          620 AASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD  699 (821)
Q Consensus       620 ~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d  699 (821)
                      +++.+++                               +|+++|.+|..|.||||+||..|+.+++++|+ .|++++.+|
T Consensus        83 ~~~~~l~-------------------------------~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          83 TLKVLVE-------------------------------HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             HHHHHHH-------------------------------TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             ccccccc-------------------------------cccccccccCCCCeeecccccccccccccccc-ccccccccC
Confidence            6665555                               45567778888999999999999999999877 689999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          700 RWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       700 ~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                      .+|+||||+|+..|+.+++++|++|
T Consensus       131 ~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=208.83  Aligned_cols=147  Identities=27%  Similarity=0.415  Sum_probs=101.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCc--ccccchhhHHHhcCCHHH
Q 003425          574 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNV--EEAGSFLCTAVARGDSDL  651 (821)
Q Consensus       574 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~t~l~~A~~~~~~~~  651 (821)
                      ||||.||+.|+.+++++|+++|++++ .|..|.||||+|+..++.++++.++........  ..+.++++.++...+.+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            44444444444555554444444443 344444555555555555544444444332222  123445555555566666


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          652 LKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       652 v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                      ++++..+|++.+.+|.+|+||||+||..|+.+++++|+++|+|++.+|.+|.||||+|+.+|+.+++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666677778888999999999999999999999999999999999999999999999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=5.6e-27  Score=241.34  Aligned_cols=201  Identities=24%  Similarity=0.221  Sum_probs=170.6

Q ss_pred             hhHHHHhh-cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCCcHHHH
Q 003425          541 LKVNSAAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL--------IQKGVDINLKDNFGNTPLLE  611 (821)
Q Consensus       541 ~~L~~A~~-~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~tpL~~  611 (821)
                      ||||.|+. .|+.++++.|.+.+++.... .+|+||||+||..|+.+++++|        ++.|+|+|.+|.+|.||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            57774443 57777777777877765443 4599999999999999988776        56799999999999999999


Q ss_pred             HHHcCChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCC------------------------------
Q 003425          612 AIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNG------------------------------  659 (821)
Q Consensus       612 A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g------------------------------  659 (821)
                      |+..|+.+++++|+++|++++..  +|.||++.|+..++.++++.+...+                              
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            99999999999999999999875  4889999999999998888876431                              


Q ss_pred             -----------------CCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 003425          660 -----------------IDPNTRDYDLRTPLHVAASEGLYLMAKLLV-EAGASVFPKDRWGNTPLDEGRMCGNKNLIKLL  721 (821)
Q Consensus       660 -----------------~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~L  721 (821)
                                       ...+..+..|.||||.|+..++.+++++++ ..|.+.+.+|..|+||||+|+..|+.+++++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~L  240 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  240 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                             011334567999999999999999998755 57899999999999999999999999999999


Q ss_pred             HhccccccccCCCCCCccccc
Q 003425          722 EDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       722 l~~~a~~~~~~~~~~~~~~~~  742 (821)
                      +++|++++..+..|.++.+.+
T Consensus       241 l~~gadin~~d~~G~T~L~~A  261 (277)
T d2fo1e1         241 IQQGASVEAVDATDHTARQLA  261 (277)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHH
T ss_pred             HHCcCCCCCcCCCCCCHHHHH
Confidence            999999999999998877643

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=8.6e-28  Score=254.67  Aligned_cols=193  Identities=17%  Similarity=0.078  Sum_probs=159.7

Q ss_pred             ccchhhhHhhhHHHHhhcCCHHHHHH---HHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCC
Q 003425          532 ISKHEAELALKVNSAAYHGDLYQLEG---LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKD--NFGN  606 (821)
Q Consensus       532 ~~~~~~~~~~~L~~A~~~g~~~~v~~---Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~  606 (821)
                      +..++..|.||||.||.+|+.++++.   |++.|+++|.+|.+|+||||+||.+|+.++|++|+++|++++..+  .+|.
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENY  162 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCC
Confidence            34667789999999999999887765   789999999999999999999999999999999999999998876  4589


Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCCCCc-----ccccchhhHHHhcCCHHHHHHHHHCCCCCCCC----------------
Q 003425          607 TPLLEAIKYGNDGAASLLVKEGASLNV-----EEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR----------------  665 (821)
Q Consensus       607 tpL~~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~----------------  665 (821)
                      ||||+|+..|+.+++++|++.|++...     .++.+|++.|+.+|+.+++++|+++|++++..                
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  242 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFI  242 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHH
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHH
Confidence            999999999999999999999976533     34667888899999999999999877543210                


Q ss_pred             -----------------CCC----------------CCcHHHHHHHcCcHHHHHHHHHcCCC-----CCCCCCCCCCHHH
Q 003425          666 -----------------DYD----------------LRTPLHVAASEGLYLMAKLLVEAGAS-----VFPKDRWGNTPLD  707 (821)
Q Consensus       666 -----------------d~~----------------g~T~Lh~A~~~g~~~~v~~Ll~~ga~-----~~~~d~~g~t~l~  707 (821)
                                       ..+                +.++|+.|+..|+.+++++|++.++.     .+..+.+|+||||
T Consensus       243 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         243 ARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence                             111                23677888888999999999998764     3445567999999


Q ss_pred             HHHHcCCHHHHHHHHhc
Q 003425          708 EGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       708 ~A~~~~~~~i~~~Ll~~  724 (821)
                      +|++.||.+++++|++.
T Consensus       323 lA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         323 LALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHHHTCTTHHHHHTTS
T ss_pred             HHHHcCcHHHHHHHhCC
Confidence            99999999999999975

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.6e-25  Score=219.32  Aligned_cols=173  Identities=24%  Similarity=0.254  Sum_probs=152.3

Q ss_pred             CCCcHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHHH
Q 003425          571 DGRSPLHLAASRGYE----EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTAV  644 (821)
Q Consensus       571 ~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~  644 (821)
                      +|.||||+|+..|+.    ++++.+...|+++|.+|..|+||||+|+..|+.+++++|+++|++++..  .|.+|++.|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            599999999999986    4556677789999999999999999999999999999999999999875  4789999999


Q ss_pred             hcCCHHHHHHHHHCCCCCC------CCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHH
Q 003425          645 ARGDSDLLKRVLSNGIDPN------TRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKD-RWGNTPLDEGRMCGNKNL  717 (821)
Q Consensus       645 ~~~~~~~v~~Ll~~g~~~~------~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~t~l~~A~~~~~~~i  717 (821)
                      ..++.++++.|++.+.+..      .....|.||||.|+..++.+++++|+..|++++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            9999999999999876543      345568999999999999999999999999998775 679999999999999999


Q ss_pred             HHHHHhccccccccCCCCCCcccccc
Q 003425          718 IKLLEDAKSTQLLEFPHGFQDTADKR  743 (821)
Q Consensus       718 ~~~Ll~~~a~~~~~~~~~~~~~~~~~  743 (821)
                      +++|+++|++++.++..|.+|...+.
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~  186 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTW  186 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCT
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHH
Confidence            99999999999999999998876543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.92  E-value=5.4e-25  Score=216.00  Aligned_cols=191  Identities=24%  Similarity=0.224  Sum_probs=175.4

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCC
Q 003425          552 LYQLEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGAS  630 (821)
Q Consensus       552 ~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  630 (821)
                      .++|+.|+++|+|+|. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999997 589999999999999999999999999999999999999999999999998887777765433


Q ss_pred             CC---cccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHH
Q 003425          631 LN---VEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLD  707 (821)
Q Consensus       631 ~~---~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  707 (821)
                      ..   ...+.++.+.+.........+.|...|++++..+..|.|||+.|+..+..++++.|++++++++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            32   234678899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          708 EGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       708 ~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      +|+..|+.+++++|+++|++++..+..|.+|.+.+
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            99999999999999999999999999998876643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2e-24  Score=200.39  Aligned_cols=149  Identities=28%  Similarity=0.351  Sum_probs=141.4

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND  618 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~  618 (821)
                      ..||||.||+.|+.++|+.|+++|++++ .|..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4599999999999999999999999987 689999999999999999999999999888888888999999999999999


Q ss_pred             HHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q 003425          619 GAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLL  688 (821)
Q Consensus       619 ~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~L  688 (821)
                      ++++++..++++.+..  +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999888764  589999999999999999999999999999999999999999999999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=214.29  Aligned_cols=196  Identities=29%  Similarity=0.362  Sum_probs=166.5

Q ss_pred             hHHHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCC---------------
Q 003425          504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT---------------  568 (821)
Q Consensus       504 ~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~---------------  568 (821)
                      ...++..+.+..+.+....+++++.+.+. ..+..|.||||+|+..|+.++++.|++.|.+.+..               
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~-~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            35677788888888777777777766443 33457999999999999999999999866543111               


Q ss_pred             -------------------------------------------------------------CCCCCcHHHHHHHcCCHHH
Q 003425          569 -------------------------------------------------------------DYDGRSPLHLAASRGYEEI  587 (821)
Q Consensus       569 -------------------------------------------------------------d~~g~t~L~~A~~~g~~~~  587 (821)
                                                                                   +..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                         1237889999999999999


Q ss_pred             HHHHHHc-CCCCCCCCCCCCcHHHHHHHcC----ChHHHHHHHhcCCCCCcc--cccchhhHHHhcCCHHHHHHHHH-CC
Q 003425          588 MTFLIQK-GVDINLKDNFGNTPLLEAIKYG----NDGAASLLVKEGASLNVE--EAGSFLCTAVARGDSDLLKRVLS-NG  659 (821)
Q Consensus       588 v~~Ll~~-g~~~~~~~~~g~tpL~~A~~~~----~~~~v~~Ll~~~~~~~~~--~~~t~l~~A~~~~~~~~v~~Ll~-~g  659 (821)
                      +++|+++ |++++..+..|.++++.+...+    ..+++++|+++|++++..  .|.||||.|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            9999975 8999999999999988776544    346899999999999875  58999999999999999999998 49


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC
Q 003425          660 IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR  700 (821)
Q Consensus       660 ~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~  700 (821)
                      +++|.+|.+|.||||+|++.|+.+++++|+++|||+|.+|.
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            99999999999999999999999999999999999999874

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=200.97  Aligned_cols=171  Identities=25%  Similarity=0.316  Sum_probs=151.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcc--cccchhhHH
Q 003425          570 YDGRSPLHLAASRGYEEIMTFLIQ----KGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVE--EAGSFLCTA  643 (821)
Q Consensus       570 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~t~l~~A  643 (821)
                      ++|+||||+||..|+.++++.|++    .|+++|.+|..|+||||+|+..|+.+++++|+++|++.+..  ++.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998875    79999999999999999999999999999999999988764  578999999


Q ss_pred             HhcCCHHHHHHHHHCC----CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHH
Q 003425          644 VARGDSDLLKRVLSNG----IDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVF-PKDRWGNTPLDEGRMCGNKNLI  718 (821)
Q Consensus       644 ~~~~~~~~v~~Ll~~g----~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~~~~i~  718 (821)
                      ...++.++++.+....    ...+.....+.+|||.+.........+.|.....+.. ..+..|.+|++.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            9999999999887753    2334556678899999999999999999999887754 4457899999999999999999


Q ss_pred             HHHHhccccccccCCCCCCccc
Q 003425          719 KLLEDAKSTQLLEFPHGFQDTA  740 (821)
Q Consensus       719 ~~Ll~~~a~~~~~~~~~~~~~~  740 (821)
                      +.+++.|......+..|.++..
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~  182 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALH  182 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHH
T ss_pred             hhhhhhccccccccccCcchHH
Confidence            9999999999999888888765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.8e-24  Score=187.69  Aligned_cols=121  Identities=31%  Similarity=0.491  Sum_probs=93.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHH
Q 003425          572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDL  651 (821)
Q Consensus       572 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~  651 (821)
                      +.++||+||..|+.+++++|+++|+|+|.+|..|.||+|.|+ .|+.+++++|                           
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~L---------------------------   54 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELL---------------------------   54 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHH---------------------------
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccc---------------------------
Confidence            457788888888888888888888888877777777776553 4555555544                           


Q ss_pred             HHHHHHCCCCCCCCCCCCC-cHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 003425          652 LKRVLSNGIDPNTRDYDLR-TPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDA  724 (821)
Q Consensus       652 v~~Ll~~g~~~~~~d~~g~-T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~  724 (821)
                          +++|++++.+|..|. ||||+||+.|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|+.+
T Consensus        55 ----l~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          55 ----LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             ----HTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                445556666666655 689999999999999999999999998898899999999999999999888753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=9.3e-24  Score=219.32  Aligned_cols=170  Identities=21%  Similarity=0.193  Sum_probs=115.1

Q ss_pred             hhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH-------HHHHHHHHcCCCCCCCCCCCCcH
Q 003425          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE-------EIMTFLIQKGVDINLKDNFGNTP  608 (821)
Q Consensus       536 ~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~g~tp  608 (821)
                      |..|.||||+||..|+.++|+.|+++|+|++.+|..|+||||.||..++.       ++++++.   .+++.+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            67888889988888888888888888888888888888999888876642       3444443   3456677888888


Q ss_pred             HHHHHHcCCh----HH--------HHHHHhcCCCCCcc---cccchhhHHHhcCCHHHHH-----HHHHCCCCCCCCCCC
Q 003425          609 LLEAIKYGND----GA--------ASLLVKEGASLNVE---EAGSFLCTAVARGDSDLLK-----RVLSNGIDPNTRDYD  668 (821)
Q Consensus       609 L~~A~~~~~~----~~--------v~~Ll~~~~~~~~~---~~~t~l~~A~~~~~~~~v~-----~Ll~~g~~~~~~d~~  668 (821)
                      ||+|+..+..    .+        +..+.+.+......   .+.++++.+........+.     .++.  ..+|.+|.+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCCCC
Confidence            8888765442    22        33444444332221   1233344333333322222     2222  237888999


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 003425          669 LRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR  710 (821)
Q Consensus       669 g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  710 (821)
                      |+||||+||+.|+.++|++|+++|||++.+|+.|+|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-23  Score=183.56  Aligned_cols=120  Identities=26%  Similarity=0.340  Sum_probs=104.5

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCC
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGN-TPLLEAIKYGN  617 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-tpL~~A~~~~~  617 (821)
                      +.++||.||..|++++|++|+++|+|+|.+|..|.||||+|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999999765 7999999999999999999988765 58888888777


Q ss_pred             hHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q 003425          618 DGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVE  690 (821)
Q Consensus       618 ~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~  690 (821)
                      .+++++|++                               +|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~-------------------------------~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHR-------------------------------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHH-------------------------------HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccc-------------------------------cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            666666555                               455677888889999999999999999998875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.3e-23  Score=184.46  Aligned_cols=106  Identities=29%  Similarity=0.272  Sum_probs=77.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHH
Q 003425          574 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLK  653 (821)
Q Consensus       574 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~  653 (821)
                      |||++|++.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++                           
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~---------------------------   56 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL---------------------------   56 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHH---------------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccccccc---------------------------
Confidence            67777777777777777777777777777777777777766666555554444                           


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Q 003425          654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGR  710 (821)
Q Consensus       654 ~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  710 (821)
                          +|+++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|.+|.||||+|.
T Consensus        57 ----~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          57 ----KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             ----SSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ----ccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence                44566677777888888888888888888888888888888888888888773

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=180.30  Aligned_cols=121  Identities=29%  Similarity=0.288  Sum_probs=77.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHH
Q 003425          574 SPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLK  653 (821)
Q Consensus       574 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~  653 (821)
                      ++||.||..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|++                           
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~---------------------------   55 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ---------------------------   55 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH---------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccc---------------------------
Confidence            45666666666666666666666666666666666666665555544444443                           


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHhcc
Q 003425          654 RVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDR-WGNTPLDEG--RMCGNKNLIKLLEDAK  725 (821)
Q Consensus       654 ~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~t~l~~A--~~~~~~~i~~~Ll~~~  725 (821)
                          +|++++.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|+||+++|  +..|+.+++++|++.+
T Consensus        56 ----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          56 ----FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             ----HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ----cccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence                3445566666777777777777777777777777777776653 466665554  4556677777776654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.1e-21  Score=175.30  Aligned_cols=84  Identities=21%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccc
Q 003425          647 GDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLVEAGASVFPKDRWGNTPLDEGRMCGNKNLIKLLEDAKS  726 (821)
Q Consensus       647 ~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a  726 (821)
                      ++.+++++|+++|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++
T Consensus        59 ~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          59 TSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             TTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            45567777777888999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             cccc
Q 003425          727 TQLL  730 (821)
Q Consensus       727 ~~~~  730 (821)
                      ....
T Consensus       139 ~~~~  142 (154)
T d1dcqa1         139 GRFN  142 (154)
T ss_dssp             TCCC
T ss_pred             CCCC
Confidence            7543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.5e-22  Score=175.61  Aligned_cols=93  Identities=30%  Similarity=0.422  Sum_probs=87.9

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHH
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGA  620 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~  620 (821)
                      +.|+.||..|+.++|+.|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHhcCCCCCc
Q 003425          621 ASLLVKEGASLNV  633 (821)
Q Consensus       621 v~~Ll~~~~~~~~  633 (821)
                      +++|+++|++++.
T Consensus        83 v~~Ll~~ga~v~~   95 (130)
T d1ycsb1          83 CKFLVESGAAVFA   95 (130)
T ss_dssp             HHHHHHTTCCTTC
T ss_pred             HHHHHHcCCCccc
Confidence            8888887776654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=2.9e-22  Score=175.61  Aligned_cols=93  Identities=40%  Similarity=0.537  Sum_probs=86.4

Q ss_pred             hhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChH
Q 003425          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDG  619 (821)
Q Consensus       540 ~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~  619 (821)
                      .|||++||+.|+.++|+.|+++|+|+|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHhcCCCCC
Q 003425          620 AASLLVKEGASLN  632 (821)
Q Consensus       620 ~v~~Ll~~~~~~~  632 (821)
                      ++++|+++|++++
T Consensus        83 ~v~~Ll~~Gad~~   95 (118)
T d1myoa_          83 CVKLLLSKGADKT   95 (118)
T ss_dssp             HHHHHHTTCCCSS
T ss_pred             hhhhhhcccccce
Confidence            8877777665443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=6e-21  Score=177.02  Aligned_cols=150  Identities=25%  Similarity=0.350  Sum_probs=125.4

Q ss_pred             HHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 003425          508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI  587 (821)
Q Consensus       508 l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~~~  587 (821)
                      +..+..+++.+.....+++. ..+++..|..|.||||+|+. |+.+++++|++.+.+++..+..|.+|++.|+..++.++
T Consensus         6 L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           6 LSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            44455555555555555443 23466778899999998875 88999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCC
Q 003425          588 MTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDY  667 (821)
Q Consensus       588 v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~  667 (821)
                      +++++++|+++|.+|..|.||||+|+..|+.+++++|++                                |++++.+|.
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--------------------------------~~~~~~~d~  131 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--------------------------------ESDLHRRDA  131 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--------------------------------TSCTTCCCT
T ss_pred             cccccccccccccccCCCCeeeccccccccccccccccc--------------------------------cccccccCC
Confidence            999999999999999999999999998888877776652                                456777888


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHc
Q 003425          668 DLRTPLHVAASEGLYLMAKLLVEA  691 (821)
Q Consensus       668 ~g~T~Lh~A~~~g~~~~v~~Ll~~  691 (821)
                      +|+||||+|+..|+.+++++|++|
T Consensus       132 ~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         132 RGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhh
Confidence            899999999999999999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.3e-20  Score=172.50  Aligned_cols=125  Identities=21%  Similarity=0.209  Sum_probs=107.3

Q ss_pred             HhhhHHHHhhcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 003425          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRT------DYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKDNFGNTPL  609 (821)
Q Consensus       539 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~tpL  609 (821)
                      ....|+.|++.+++..+..++..|+|++..      +..|+||||+|+..   |+.+++++|+++|+++|.+|..|.|||
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpL   85 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccc
Confidence            445678899999999999999999987654      67899999999974   678999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q 003425          610 LEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTRDYDLRTPLHVAASEGLYLMAKLLV  689 (821)
Q Consensus       610 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T~Lh~A~~~g~~~~v~~Ll  689 (821)
                      |+|+..|+.+++++|++                               +|++++.+|..|.||||+|++.|+.+++++|+
T Consensus        86 h~A~~~~~~~~v~~Ll~-------------------------------~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~  134 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLR-------------------------------GKASIEIANESGETPLDIAKRLKHEHCEELLT  134 (154)
T ss_dssp             HHHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccccccccccccccccc-------------------------------cCccccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99988877776666655                               55677888889999999999999999999999


Q ss_pred             HcCCC
Q 003425          690 EAGAS  694 (821)
Q Consensus       690 ~~ga~  694 (821)
                      +.++.
T Consensus       135 ~~~~~  139 (154)
T d1dcqa1         135 QALSG  139 (154)
T ss_dssp             HHHTT
T ss_pred             HhCCC
Confidence            97654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=2.7e-23  Score=219.76  Aligned_cols=155  Identities=11%  Similarity=0.019  Sum_probs=122.4

Q ss_pred             hhHHHHhhcCCHHHHHHHHHcCCCC-----------CCCCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCC
Q 003425          541 LKVNSAAYHGDLYQLEGLIRAGADP-----------NRTDYDGRSPLHLAASRGYEEIMTF---LIQKGVDINLKDNFGN  606 (821)
Q Consensus       541 ~~L~~A~~~g~~~~v~~Ll~~g~~~-----------n~~d~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~  606 (821)
                      +.++.+...+..++.+.+...+++.           +.++..|.||||+||.+|+.+++++   |++.|+++|.+|..|.
T Consensus        48 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~  127 (346)
T d2ajaa1          48 IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY  127 (346)
T ss_dssp             HHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCC
Confidence            3344444444455555554443332           2346689999999999999887765   7899999999999999


Q ss_pred             cHHHHHHHcCChHHHHHHHhcCCCCCcc----cccchhhHHHhcCCHHHHHHHHHCCCCCC---CCCCCCCcHHHHHHHc
Q 003425          607 TPLLEAIKYGNDGAASLLVKEGASLNVE----EAGSFLCTAVARGDSDLLKRVLSNGIDPN---TRDYDLRTPLHVAASE  679 (821)
Q Consensus       607 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~----~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~---~~d~~g~T~Lh~A~~~  679 (821)
                      ||||+||..|+.++|++|+++|++++..    +|.||||+|+..|+.+++++|++.|++.+   ..+.+|.||+|.|+..
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~  207 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  207 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhc
Confidence            9999999999999999999999998764    48899999999999999999999997653   3445677888999999


Q ss_pred             CcHHHHHHHHHcCCCC
Q 003425          680 GLYLMAKLLVEAGASV  695 (821)
Q Consensus       680 g~~~~v~~Ll~~ga~~  695 (821)
                      |+.+++++|+++|+++
T Consensus       208 g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         208 GHHNVINFLLDCPVML  223 (346)
T ss_dssp             CCHHHHHHHTTSHHHH
T ss_pred             CHHHHHHHHHhCCCCc
Confidence            9999999999988654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.1e-20  Score=169.02  Aligned_cols=154  Identities=23%  Similarity=0.269  Sum_probs=133.9

Q ss_pred             HHHHHHhcCCcchhhhhhhcccccccccchhhhHhhhHHHHhhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCH
Q 003425          506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE  585 (821)
Q Consensus       506 ~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~g~~  585 (821)
                      ..|+.+...++.+.....++++.+.  +..|..|.||||.|+ .|+.+++++|+++|++++..+..|.+||+.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~--n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc--CccCCcccccccccc-cccccccccccccccccccccccCccccccccccccc
Confidence            3456667777777777777776654  557888999999876 7999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChHHHHHHHhcCCCCCcccccchhhHHHhcCCHHHHHHHHHCCCCCCCC
Q 003425          586 EIMTFLIQKGVDINLKDNFGNTPLLEAIKYGNDGAASLLVKEGASLNVEEAGSFLCTAVARGDSDLLKRVLSNGIDPNTR  665 (821)
Q Consensus       586 ~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~t~l~~A~~~~~~~~v~~Ll~~g~~~~~~  665 (821)
                      ++++.|++.+.+++..+..|.+|+|+|+..++.+++++|+++++                              .+++.+
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~------------------------------~~~~~~  129 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA------------------------------SNVGHR  129 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC------------------------------CCTTCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc------------------------------cccccc
Confidence            99999999999999999999999999999988888888877653                              366778


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHcC
Q 003425          666 DYDLRTPLHVAASEGLYLMAKLLVEAG  692 (821)
Q Consensus       666 d~~g~T~Lh~A~~~g~~~~v~~Ll~~g  692 (821)
                      |..|.||||+|++.|+.+++++|+++|
T Consensus       130 d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         130 NHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            888999999999999999999999887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=2.6e-20  Score=192.98  Aligned_cols=182  Identities=18%  Similarity=0.191  Sum_probs=126.7

Q ss_pred             HcCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh-------HHHHHHHhcCCCC
Q 003425          560 RAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKDNFGNTPLLEAIKYGND-------GAASLLVKEGASL  631 (821)
Q Consensus       560 ~~g~~~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~tpL~~A~~~~~~-------~~v~~Ll~~~~~~  631 (821)
                      ..+.|+|.. |.+|+||||+||..|+.++|++|+++|+|++.+|..|+||||.||..++.       ++++++.+.... 
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~-  172 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-  172 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE-
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhh-
Confidence            357788866 99999999999999999999999999999999999999999999987652       445555443222 


Q ss_pred             CcccccchhhHHHhcCCH----H--------HHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCcHHHHHHHH-H--cCCCC
Q 003425          632 NVEEAGSFLCTAVARGDS----D--------LLKRVLSNGIDP-NTRDYDLRTPLHVAASEGLYLMAKLLV-E--AGASV  695 (821)
Q Consensus       632 ~~~~~~t~l~~A~~~~~~----~--------~v~~Ll~~g~~~-~~~d~~g~T~Lh~A~~~g~~~~v~~Ll-~--~ga~~  695 (821)
                      ....|+||||.++..+..    .        ++..+...+... ......+.++++.+........+..+. .  .+..+
T Consensus       173 ~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  252 (301)
T d1sw6a_         173 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  252 (301)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             cccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCc
Confidence            223578999988865542    2        344555554333 344455666777665554433332221 1  12347


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccCCCCCCccccc
Q 003425          696 FPKDRWGNTPLDEGRMCGNKNLIKLLEDAKSTQLLEFPHGFQDTADK  742 (821)
Q Consensus       696 ~~~d~~g~t~l~~A~~~~~~~i~~~Ll~~~a~~~~~~~~~~~~~~~~  742 (821)
                      |.+|.+|+||||+|++.|+.+++++|+++||++...+..|.+|....
T Consensus       253 n~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         253 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            88999999999999999999999999999999999999999987654

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=3.3e-19  Score=159.49  Aligned_cols=121  Identities=19%  Similarity=0.270  Sum_probs=113.6

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccce-EEEeCCCCccccc
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY-VSYLHPNSSFGEV  465 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~-i~~l~~G~~fGe~  465 (821)
                      ++|+++|+|++++++.+..|+..++++.|++|++|+++||.++++|+|.+|.|+++..+++|++.+ +..+++|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            578999999999999999999999999999999999999999999999999999998887877754 7889999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      +++.+.+++++++|.++|+++.|++++|.++++.+|+..++.
T Consensus        82 ~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~~  123 (132)
T d1ne6a2          82 ALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRN  123 (132)
T ss_dssp             HHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHHG
T ss_pred             eecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHHH
Confidence            999999999999999999999999999999999999875553

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=9.1e-19  Score=157.42  Aligned_cols=122  Identities=23%  Similarity=0.377  Sum_probs=114.1

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..+.|+++|+|++++++.+..++..++...|+||++|+++||.++.+|||.+|.|+++. ..+|.+..+..+.+|++||+
T Consensus        14 l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~-~~~~~~~~~~~l~~g~~fg~   92 (136)
T d1cx4a1          14 LQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGE   92 (136)
T ss_dssp             HHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-EETTEEEEEEEEESSCEECH
T ss_pred             HHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEee-ccccceeeeeccCCccccch
Confidence            34678999999999999999999999999999999999999999999999999999975 45677778889999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      .+++.+.|++++++|.++|.++.|++++|.++++.++...+.+
T Consensus        93 ~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1cx4a1          93 LALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM  135 (136)
T ss_dssp             HHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhc
Confidence            9999999999999999999999999999999999999888765

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=1.4e-18  Score=158.81  Aligned_cols=126  Identities=17%  Similarity=0.286  Sum_probs=114.4

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeecc------CCccceEEEeCCCC
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE------NGTEDYVSYLHPNS  460 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~------~g~~~~i~~l~~G~  460 (821)
                      .+|+++|+|++++++.+..|+..++.+.|+||++|+++||.++.+|+|.+|.|+++....      +++...+..+++|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            578899999999999999999999999999999999999999999999999999987544      34556688999999


Q ss_pred             ccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHh
Q 003425          461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (821)
Q Consensus       461 ~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l  512 (821)
                      +|||.+++.+.|++++++|.++|++++|++++|.+++.++|+..++.+....
T Consensus        82 ~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~~~~  133 (147)
T d1cx4a2          82 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYE  133 (147)
T ss_dssp             EESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             EeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988777665554

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.6e-18  Score=153.78  Aligned_cols=118  Identities=23%  Similarity=0.359  Sum_probs=108.2

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe  464 (821)
                      ..+.+++.++|++++++++.+|+..++...|+||++|+++||.++.+|||.+|.++++..     ...+..+++|++|||
T Consensus        18 l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~-----~~~~~~l~~G~~fGe   92 (136)
T d1ne6a1          18 LAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN-----NEWATSVGEGGSFGE   92 (136)
T ss_dssp             HHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET-----TEEEEEECTTCEECC
T ss_pred             HHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeecc-----ccccceecccccccc
Confidence            356788899999999999999999999999999999999999999999999999998862     224667999999999


Q ss_pred             ccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHH
Q 003425          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (821)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~  507 (821)
                      .+++.+.|++++++|.++|.++.|++++|.++++.+|...+.+
T Consensus        93 ~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1ne6a1          93 LALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM  135 (136)
T ss_dssp             HHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred             HHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHHhh
Confidence            9999999999999999999999999999999999999776554

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.75  E-value=3.6e-18  Score=155.84  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             hhhhccccccccCCCHHHHHHHHHhcc--cccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          385 YLPYIEKVPLFKGCSSEFINQIVIRLH--EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       385 ~~~~l~~~~~f~~~~~~~l~~l~~~~~--~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ..+.|.++|+|++++++.+..|+..++  .+.|.||++|+.+|++++++|||.+|.|+++..+.+|++.++..+.+|++|
T Consensus         4 ~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~f   83 (147)
T d1zyba2           4 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   83 (147)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             HHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEe
Confidence            357889999999999999999998765  568999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCc-ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          463 GEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       463 Ge~~~~~~~~~-~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      |+.+++.+.++ +++++|.++|.++.|+++.|.++++++|++...+++.+..+
T Consensus        84 Ge~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~r  136 (147)
T d1zyba2          84 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR  136 (147)
T ss_dssp             CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred             ccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999887775 79999999999999999999999999999999998877653

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=3.4e-18  Score=157.27  Aligned_cols=134  Identities=23%  Similarity=0.281  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhhhhhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccC--Cccc
Q 003425          374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN--GTED  451 (821)
Q Consensus       374 ~~L~~~i~~~~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~--g~~~  451 (821)
                      |.-|.+...+....+++++++|++++++.+..++..++.+.|+||++|+++||.++.+|+|.+|.++++.....  +...
T Consensus        11 p~~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~   90 (155)
T d1o7fa2          11 PLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAV   90 (155)
T ss_dssp             STTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCE
T ss_pred             hhhCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeeccccccccc
Confidence            33466666666778899999999999999999999999999999999999999999999999999998765443  5566


Q ss_pred             eEEEeCCCCccccccccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHH
Q 003425          452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL  508 (821)
Q Consensus       452 ~i~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l  508 (821)
                      .+..+++|++||+ +++.+.|++++++|.++|+++.|++++|.++++++|++...++
T Consensus        91 ~v~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~~ll  146 (155)
T d1o7fa2          91 TICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLL  146 (155)
T ss_dssp             EEEEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTS
T ss_pred             ccccccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHHHHH
Confidence            7888999999998 8999999999999999999999999999999999999766543

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.73  E-value=3.9e-18  Score=152.49  Aligned_cols=122  Identities=23%  Similarity=0.324  Sum_probs=113.1

Q ss_pred             hhhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccc
Q 003425          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       386 ~~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~  465 (821)
                      .++|+++|+|++++++++..|+..++.+.|+||++|+++|+.++.+|+|.+|.++++..  ++     ..+.+|++||+.
T Consensus        10 ~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~--~~-----~~l~~G~~~G~~   82 (133)
T d1vp6a_          10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATP--NP-----VELGPGAFFGEM   82 (133)
T ss_dssp             HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSS--SC-----EEECTTCEECHH
T ss_pred             HHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEEe--ee-----eeeccCcccccc
Confidence            37899999999999999999999999999999999999999999999999999998762  22     247999999999


Q ss_pred             cccccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +++.+.|+.++++|.++|+++.|++++|.+++..+|++...+++.+.++
T Consensus        83 ~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          83 ALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             HHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             cccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988877653

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=5.9e-18  Score=151.62  Aligned_cols=117  Identities=17%  Similarity=0.259  Sum_probs=103.9

Q ss_pred             hhccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCC-ccceEEEeCCCCccccc
Q 003425          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFGEV  465 (821)
Q Consensus       387 ~~l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g-~~~~i~~l~~G~~fGe~  465 (821)
                      ..|+++|+|++++++.+.+|+..++++.|+||++|+++||.++.+|||.+|.|+++....++ ....+..+++|++|||.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            57899999999999999999999999999999999999999999999999999988755443 33456789999999999


Q ss_pred             cccc---------cCCcceEEEEecceEEEEechHhHHHHHHHhhhc
Q 003425          466 SILC---------NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD  503 (821)
Q Consensus       466 ~~~~---------~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~  503 (821)
                      +++.         ..++++|++|+++|+++.|++++|.+++++++..
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r~  132 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS  132 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred             hHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhccc
Confidence            8763         2356789999999999999999999999998865

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.71  E-value=1.3e-17  Score=151.00  Aligned_cols=121  Identities=13%  Similarity=0.155  Sum_probs=111.7

Q ss_pred             cccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc
Q 003425          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (821)
Q Consensus       394 ~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~  473 (821)
                      +|+.++++.+..+...++++.|++|++|+.+|+.++.+|+|.+|.++++..+++|++.++..+++|++||+.+++.+.|+
T Consensus         8 lf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~   87 (142)
T d2gaua2           8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETC   87 (142)
T ss_dssp             HHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCC
T ss_pred             HHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       474 ~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                      +++++|.++|+++.|++++|.++++++|.+...++..+..+
T Consensus        88 ~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~r  128 (142)
T d2gaua2          88 SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKE  128 (142)
T ss_dssp             SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988877653

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.9e-17  Score=143.86  Aligned_cols=115  Identities=20%  Similarity=0.320  Sum_probs=103.5

Q ss_pred             hhhhhccccccccCCCHHHHHHHHHhccccc-ccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcc
Q 003425          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEF-FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (821)
Q Consensus       384 ~~~~~l~~~~~f~~~~~~~l~~l~~~~~~~~-~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~f  462 (821)
                      ...+.|+++|+|++++++.+.+|+..++... +++|++|+++||.++.+|+|.+|.|+++..    .+.....+++|++|
T Consensus         7 ~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~----~~~~~~~~~~G~~f   82 (124)
T d1o7fa3           7 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY----GKGVVCTLHEGDDF   82 (124)
T ss_dssp             HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET----TTEEEEEEETTCEE
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEe----eeeecccccCCcch
Confidence            3557889999999999999999999998765 567999999999999999999999998762    23346778999999


Q ss_pred             ccccccccCCcceEEEEecc-eEEEEechHhHHHHHHHhhh
Q 003425          463 GEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFC  502 (821)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~-~~~~~i~~~~f~~~l~~~p~  502 (821)
                      ||.+++.+.||++|++|.++ |.++.|++++|.++++++|+
T Consensus        83 Ge~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          83 GKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             CGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            99999999999999999986 89999999999999999986

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.5e-16  Score=139.72  Aligned_cols=115  Identities=16%  Similarity=0.295  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccc-cCCcceEE
Q 003425          399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC-NIPQPYTV  477 (821)
Q Consensus       399 ~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~-~~~~~~~~  477 (821)
                      +++.++.++.+++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.++..+.+|++||+.+++. +.++.+++
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~   81 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWV   81 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999886 57789999


Q ss_pred             EEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       478 ~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +|.++|.++.||+++|.++++++|.+...+++.+.+
T Consensus        82 ~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~  117 (132)
T d1i5za2          82 RAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  117 (132)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             EEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998887654

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=5.3e-16  Score=138.64  Aligned_cols=113  Identities=15%  Similarity=0.282  Sum_probs=105.2

Q ss_pred             HHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccccc----CCcceE
Q 003425          401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN----IPQPYT  476 (821)
Q Consensus       401 ~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~----~~~~~~  476 (821)
                      +.++.++..++.+.|++|++|+++|++++.+|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+    .|++++
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            5678899999999999999999999999999999999999999999999999999999999999998864    578899


Q ss_pred             EEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       477 ~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      ++|.++|+++.||++.|.++++.+|++...+++.+..
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD  119 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887765

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.61  E-value=5.9e-16  Score=139.20  Aligned_cols=123  Identities=16%  Similarity=0.111  Sum_probs=113.2

Q ss_pred             ccccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccc
Q 003425          389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL  468 (821)
Q Consensus       389 l~~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~  468 (821)
                      ...+..+.-+|.+.++.++..++.+.|++|++|+.+|+.++.+|||.+|.++++..+++|++.++..+++|++||+..  
T Consensus         3 ~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~--   80 (139)
T d3e5ua2           3 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY--   80 (139)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS--
T ss_pred             hhhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh--
Confidence            444555777888899999999999999999999999999999999999999999999999999999999999999854  


Q ss_pred             ccCCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                       ..++..+++|.++|+++.|+++.|.++++.+|++...+++.+.++
T Consensus        81 -~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r  125 (139)
T d3e5ua2          81 -PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  125 (139)
T ss_dssp             -CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             -hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             457889999999999999999999999999999999999988864

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=1.2e-15  Score=135.49  Aligned_cols=111  Identities=17%  Similarity=0.239  Sum_probs=103.6

Q ss_pred             HHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc-ceEEEEec
Q 003425          403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCE  481 (821)
Q Consensus       403 l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~-~~~~~a~~  481 (821)
                      +++|+...+.+.|++|++|+++|++++++|||.+|.++++....+|++..+..+++|++||+.+++.+.++ +++++|.+
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~   82 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGE   82 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESS
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeec
Confidence            45677888999999999999999999999999999999999999999999999999999999999987764 68999999


Q ss_pred             ceEEEEechHhHHHHHHHhhhchHHHHHHHhc
Q 003425          482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (821)
Q Consensus       482 ~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~  513 (821)
                      +|+++.||+++|.++++.+|++...+++.+..
T Consensus        83 ~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~  114 (129)
T d1o5la1          83 NSKILSIPKEVFLDLLMKDRELLLFFLKDVSE  114 (129)
T ss_dssp             SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99999999999999999999999999887765

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.59  E-value=3.3e-15  Score=124.85  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~~  320 (821)
                      +|.+|+||+++|+|||||||++|.|+.+|+++++++++|+.+++++++.+++.+.+
T Consensus        40 s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999887744

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.56  E-value=1.8e-15  Score=134.43  Aligned_cols=116  Identities=12%  Similarity=0.082  Sum_probs=107.4

Q ss_pred             ccccccCCCHHHHHHHHHhcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCcccccccccc
Q 003425          391 KVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN  470 (821)
Q Consensus       391 ~~~~f~~~~~~~l~~l~~~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~  470 (821)
                      +.++|+.++++.++.+...++.+.|++|++|+.+|+.++.+|+|.+|.++++..+ +|++.++..+.+|++||+.     
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~-~g~e~~l~~~~~g~~f~~~-----   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVG-EEREISLFYLTSGDMFCMH-----   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEE-TTEEEEEEEEETTCEEESC-----
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccc-cccceeecccccccccccc-----
Confidence            5688999999999999999999999999999999999999999999999998755 6888899999999999874     


Q ss_pred             CCcceEEEEecceEEEEechHhHHHHHHHhhhchHHHHHHHhcC
Q 003425          471 IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (821)
Q Consensus       471 ~~~~~~~~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~l~~~l~~  514 (821)
                        ++++++|.++|+++.|+++.|.++++++|++...+++.+..+
T Consensus        77 --~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~r  118 (132)
T d1ft9a2          77 --SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA  118 (132)
T ss_dssp             --SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             --ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              578999999999999999999999999999999999887664

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.47  E-value=1e-13  Score=118.86  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~  319 (821)
                      +|.+|+||+++|||||||||++|++..+++++++.+++|++++++++|.+.+.++
T Consensus        60 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs  114 (116)
T d1xl4a2          60 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  114 (116)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999999999999999999999999999887664

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.42  E-value=1e-13  Score=118.83  Aligned_cols=55  Identities=25%  Similarity=0.351  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003425          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (821)
Q Consensus       265 ~Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~~~~  319 (821)
                      +|.+|+||+++|+|||||||++|.++.+++++++.+++|++++|+++|.+.+.++
T Consensus        61 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s  115 (116)
T d1p7ba2          61 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  115 (116)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999999999999987664

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.15  E-value=8.6e-14  Score=109.82  Aligned_cols=51  Identities=25%  Similarity=0.384  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhhccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003425          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (821)
Q Consensus       266 Y~~s~yw~~~t~tTvGyGdi~p~t~~e~~~~~~~~i~g~~~~a~~i~~i~~  316 (821)
                      |.+|+||+++|+||+||||++|.|..+|+++++++++|+.++++.++.+++
T Consensus        28 ~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2          28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            558999999999999999999999999999999999999999999998764

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.61  E-value=3.3e-08  Score=69.43  Aligned_cols=51  Identities=18%  Similarity=0.171  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCceeccccCCCCCcccccccchHHHHHHHHHHHHHHhhcccc
Q 003425          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGY  282 (821)
Q Consensus       208 ~~~~~~~~~l~~~h~~ac~~~~i~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~yw~~~t~tTvGy  282 (821)
                      .+...++++++++-+++++.|+++...++++                        +.++++|+||+++|||||||
T Consensus         7 ~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~------------------------f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQ------------------------LITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------------------------CCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc------------------------ccccchhhhhheeeeecccC
Confidence            4455556666666778888888886533322                        34689999999999999998

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.45  E-value=1.6e-08  Score=87.52  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhhcceeeee--ecCCCcCeehhHHHHHHHHHHhHhheeeEEEEeCCceEEeeccHHHHHHHhhhhh
Q 003425           75 AWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF  152 (821)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~Di~l~f~t~y~~~~~~~~v~~~~~I~~~Ylk~~f  152 (821)
                      .++.++.++++.+++++-++...  ..+....+..+|.++.++|++|+++|+..+            +++  .+|.+ |.
T Consensus         7 ~~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~------------~~~--~~~~~-~~   71 (132)
T d1orsc_           7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS------------GDP--AGYVK-KT   71 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT------------TST--TTTTT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhC------------Ccc--ceeCC-cc
Confidence            45667777777777766555322  122233468999999999999999977432            222  44554 46


Q ss_pred             HHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003425          153 IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEK  198 (821)
Q Consensus       153 ~iDlis~lP~~~~~~~~~~~~~~~~l~llrl~rl~r~~~~~~~~~~  198 (821)
                      ++|+++++|+.......+....++.+|++|++|++|+.+...+.+.
T Consensus        72 ~iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~~  117 (132)
T d1orsc_          72 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK  117 (132)
T ss_dssp             GGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999998876655544556667777777777777776666553

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=93.62  E-value=0.61  Score=34.85  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=69.4

Q ss_pred             hcccccccccCeEEccCCccCeEEEEEeeEEEEEeeccCCccceEEEeCCCCccccccccccCCc--ceEEEEec-ceEE
Q 003425          409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVCE-LCRL  485 (821)
Q Consensus       409 ~~~~~~~~~~e~I~~~g~~~~~ly~I~~G~v~~~~~~~~g~~~~i~~l~~G~~fGe~~~~~~~~~--~~~~~a~~-~~~~  485 (821)
                      -.++..|.+.|.|+.+=|+.+...|+..|..++..+.++|.-..+.+. .|.+.=-.++++....  -++.+.+. ....
T Consensus        10 gikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlqyy-kgafiimsg~idt~~~lgyynlevise~ata   88 (131)
T d2bgca2          10 GIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATA   88 (131)
T ss_dssp             TCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEE
T ss_pred             CCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeeeec-cccEEEEecccccCCccceeeeeeehhccee
Confidence            478899999999999999999999999999999999999987666643 4555433334432222  24455443 4678


Q ss_pred             EEechHhHHHHHHHhhh
Q 003425          486 LRIDKQSFTNIIDIYFC  502 (821)
Q Consensus       486 ~~i~~~~f~~~l~~~p~  502 (821)
                      |.|.-.++.+++.+.-.
T Consensus        89 yvikisdlk~lvs~dl~  105 (131)
T d2bgca2          89 YVIKINELKELLSKNLT  105 (131)
T ss_dssp             EEEEHHHHHHHHHHCHH
T ss_pred             eeEEHHHHHHHHHHhHH
Confidence            89999999999876643