Citrus Sinensis ID: 003432
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | 2.2.26 [Sep-21-2011] | |||||||
| O52177 | 757 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.627 | 0.408 | 1e-107 | |
| O54408 | 734 | GTP pyrophosphokinase OS= | yes | no | 0.569 | 0.636 | 0.398 | 2e-99 | |
| Q931Q4 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| P0A0E9 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| P0A0F0 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| Q6G8T5 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| Q6GG70 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| Q99TL8 | 736 | GTP pyrophosphokinase OS= | yes | no | 0.579 | 0.645 | 0.383 | 2e-94 | |
| Q54089 | 739 | Bifunctional (p)ppGpp syn | N/A | no | 0.568 | 0.630 | 0.369 | 8e-93 | |
| Q8CS97 | 729 | GTP pyrophosphokinase OS= | yes | no | 0.547 | 0.615 | 0.387 | 3e-91 |
| >sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 | Back alignment and function desciption |
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Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 221/541 (40%), Positives = 327/541 (60%), Gaps = 66/541 (12%)
Query: 124 EDSPERLWEDLRPTISYLSPN-ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL 182
+DSPER PT+S P+ +L+++++A + + + H GQ R+SGEP+++HP+EVA IL
Sbjct: 19 DDSPERH----PPTVSQYHPDPDLDIIKKAYVYSAKVHQGQLRKSGEPYLVHPLEVAGIL 74
Query: 183 GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNEN 242
GEL+LD SI GLLHDT+EDT + T E + E FG+ V +V+G TK+SK + +
Sbjct: 75 GELKLDEASIVTGLLHDTIEDT-LATEEELTELFGSEVAHLVDGVTKLSKF----SASAS 129
Query: 243 HSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAP 302
S ++ +A++ R+M +AM +++RVI+VKLADR HNMRTL HM KQ+ IA ETL ++AP
Sbjct: 130 LSQEEKQAENFRKMIIAMAQDIRVILVKLADRTHNMRTLDHMSEEKQARIAQETLDIYAP 189
Query: 303 LAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 362
LA LG+ IK+ELE+LSF Y +++ ++ ++ KE EK +E+ ++ K+ +
Sbjct: 190 LANRLGISWIKTELEDLSFRYVKPQEFFALQAKLNKRKKEREKYIEDTCDLIRSKLAE-- 247
Query: 363 FLDLMTVKTEIRSVCKEPYSIYKAVLKSRG-SINEVNQIAQLRIIIKPKPCSGVGPLCSP 421
+K E+ K YSIYK + KS+G ++++ I RII P
Sbjct: 248 ----RGLKGEVSGRFKHVYSIYKKI-KSQGIDFDQIHDIIAFRIIAPTAPS--------- 293
Query: 422 QQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEE 481
CY LGLVH +W P+P KD+IA PKPN YQSLHTT+I L E R+EVQIRT E
Sbjct: 294 ---CYEALGLVHEMWKPVPGRFKDFIAIPKPNMYQSLHTTIIGPLSE---RVEVQIRTSE 347
Query: 482 MDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQE 541
M IAE GIAAH+ + GK V + + +WL + EWQ+
Sbjct: 348 MHKIAEEGIAAHW-----------------KYKEGKAVISKDDE---KFAWLRQLMEWQQ 387
Query: 542 EFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAA 601
+ +EF++T+ DL VFVFTP+G++++LP+GAT VD+AY IH+++GN+ V A
Sbjct: 388 DL---KDPKEFLETVKVDLFTDEVFVFTPKGDVRSLPRGATPVDFAYAIHSDVGNRCVGA 444
Query: 602 KVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRH--KQWLEHAKTRSARHKIMKFLRE 659
KVNG +V + + N + VE++T + Q+H K WL KT A+ +I F+++
Sbjct: 445 KVNGKIVPLRYKMKNGDTVEVLT--------SPQQHPSKDWLTFVKTSRAQQRIRGFIKQ 496
Query: 660 Q 660
Q
Sbjct: 497 Q 497
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In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the formation of pppGpp which is then hydrolyzed to form ppGpp. Myxococcus xanthus (taxid: 34) EC: 2EC: .EC: 7EC: .EC: 6EC: .EC: 5 |
| >sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 | Back alignment and function description |
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| >sp|Q931Q4|RELA_STAAM GTP pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=relA PE=3 SV=2 | Back alignment and function description |
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| >sp|P0A0E9|RELA_STAAW GTP pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0A0F0|RELA_STAAU GTP pyrophosphokinase OS=Staphylococcus aureus GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6G8T5|RELA_STAAS GTP pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6GG70|RELA_STAAR GTP pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=relA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q99TL8|RELA_STAAN GTP pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=relA PE=1 SV=2 | Back alignment and function description |
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| >sp|Q54089|RELA_STREQ Bifunctional (p)ppGpp synthase/hydrolase RelA OS=Streptococcus dysgalactiae subsp. equisimilis GN=relA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| 224131084 | 892 | predicted protein [Populus trichocarpa] | 0.978 | 0.899 | 0.818 | 0.0 | |
| 255564246 | 887 | guanosine-3',5'-bis(diphosphate) 3'-pyro | 0.978 | 0.904 | 0.793 | 0.0 | |
| 297743917 | 883 | unnamed protein product [Vitis vinifera] | 0.995 | 0.924 | 0.8 | 0.0 | |
| 225437434 | 887 | PREDICTED: GTP pyrophosphokinase-like [V | 0.995 | 0.919 | 0.796 | 0.0 | |
| 356570978 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.980 | 0.911 | 0.783 | 0.0 | |
| 356503913 | 882 | PREDICTED: GTP pyrophosphokinase-like [G | 0.980 | 0.911 | 0.783 | 0.0 | |
| 30268666 | 876 | RelA-SpoT like protein RSH1 [Nicotiana t | 0.982 | 0.920 | 0.771 | 0.0 | |
| 449469300 | 883 | PREDICTED: GTP pyrophosphokinase-like [C | 0.976 | 0.907 | 0.785 | 0.0 | |
| 449484441 | 883 | PREDICTED: LOW QUALITY PROTEIN: GTP pyro | 0.976 | 0.907 | 0.784 | 0.0 | |
| 307066606 | 885 | RSH1 [Ipomoea nil] | 0.982 | 0.910 | 0.753 | 0.0 |
| >gi|224131084|ref|XP_002320997.1| predicted protein [Populus trichocarpa] gi|222861770|gb|EEE99312.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1364 bits (3531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/822 (81%), Positives = 725/822 (88%), Gaps = 20/822 (2%)
Query: 1 MASAASMSVSVECVNICKL-PKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPA-HSS 58
MASA+S+SV VEC+NICKL KGDGSGRY +CSVLSCAWKAPR LTGFLAST HP+ S
Sbjct: 1 MASASSLSVPVECLNICKLLSKGDGSGRY-ECSVLSCAWKAPRVLTGFLASTAHPSPQCS 59
Query: 59 SLSLGPTGRRNRINSRCEAFDVGS-WCTEGSDLVLLGKLPRSSLLHVACKRWRLCLSPSV 117
S G GRR + SRC+AFD G + +E SD LLG+ +S L HVA K+W+L S S+
Sbjct: 60 SFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFKSRLHHVAGKKWQLSSSSSI 119
Query: 118 SSDAFKEDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVE 177
S+D F E SPERLWEDL+PT+SYLSP ELELV +AL LAFEAHDGQKRRSGEPFIIHPVE
Sbjct: 120 SADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVE 179
Query: 178 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLK 237
VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG VR IVEGETKVSKLGKLK
Sbjct: 180 VARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLK 239
Query: 238 CKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297
CKNEN SVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMP HKQSSIA ETL
Sbjct: 240 CKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETL 299
Query: 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKK 357
QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKIL KK
Sbjct: 300 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKK 359
Query: 358 IEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGP 417
IE+DQFLDL+TVKT++R+VCKEPYSIY+AVLKS+GSINEVNQIAQLRIII+PKPC G GP
Sbjct: 360 IEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVNQIAQLRIIIQPKPCIGAGP 419
Query: 418 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 477
LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQI
Sbjct: 420 LCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQI 479
Query: 478 RTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537
RTEEMDLIAERGIAAHYSGRVFVTGLVGHA PNGRS RGK VCLNNANIALRI WLNAIR
Sbjct: 480 RTEEMDLIAERGIAAHYSGRVFVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIR 539
Query: 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGE-----------IKNLPKGATVVDY 586
EWQEEFVGNM+SREFV+TITRDLLGS VFVFTPRGE IKNLPKGAT +DY
Sbjct: 540 EWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEFWILIFDDMVQIKNLPKGATAIDY 599
Query: 587 AYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKT 646
AYMIHTEIGNKMVAAKVNGNLVSP HVLANAEVVEIITYNALSSKSAFQRHKQWL+HAKT
Sbjct: 600 AYMIHTEIGNKMVAAKVNGNLVSPMHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKT 659
Query: 647 RSARHKIMKFLREQAALSASEITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMN 706
RSARHKIMKFLREQAALSA+EITAD+V DF+ADS ESEVED+SD +K+ +PLWEKILMN
Sbjct: 660 RSARHKIMKFLREQAALSAAEITADSVNDFIADSEGESEVEDISDNNKRSRPLWEKILMN 719
Query: 707 VVQMSSPVRNSKAVCSDDNASLWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHAN 766
VV+ SS + S + ++W PKVNGKHNK V + +G+L SQ N AKM+ A+
Sbjct: 720 VVEKSSQGKCSNDFLPVNYGTVWTPKVNGKHNKHV-----QTKGDLLSQGNGVAKMIQAS 774
Query: 767 VPMYKEVLPGLESWQASKIATWHNLEGHSIQWFSVVCIDRRG 808
+P YKEVLPGLESWQASK+A+WH+LEGHSIQWF VVCIDRRG
Sbjct: 775 IPRYKEVLPGLESWQASKVASWHSLEGHSIQWFCVVCIDRRG 816
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564246|ref|XP_002523120.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223537682|gb|EEF39305.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297743917|emb|CBI36887.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225437434|ref|XP_002272154.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356570978|ref|XP_003553659.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356503913|ref|XP_003520744.1| PREDICTED: GTP pyrophosphokinase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|30268666|dbj|BAC76004.1| RelA-SpoT like protein RSH1 [Nicotiana tabacum] | Back alignment and taxonomy information |
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| >gi|449469300|ref|XP_004152359.1| PREDICTED: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449484441|ref|XP_004156884.1| PREDICTED: LOW QUALITY PROTEIN: GTP pyrophosphokinase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|307066606|gb|ADN23834.1| RSH1 [Ipomoea nil] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| TAIR|locus:2137869 | 884 | RSH1 "RELA/SPOT homolog 1" [Ar | 0.976 | 0.906 | 0.724 | 6.7e-310 | |
| TIGR_CMR|DET_0005 | 728 | DET_0005 "GTP pyrophosphokinas | 0.380 | 0.428 | 0.398 | 6.4e-87 | |
| TIGR_CMR|CBU_0303 | 707 | CBU_0303 "guanosine-3,5-bis(di | 0.325 | 0.377 | 0.392 | 6.3e-80 | |
| TIGR_CMR|CPS_4973 | 703 | CPS_4973 "guanosine-3,5-bis(di | 0.325 | 0.379 | 0.397 | 2.4e-77 | |
| UNIPROTKB|Q3A9Z8 | 716 | relA "GTP pyrophosphokinase" [ | 0.318 | 0.364 | 0.425 | 2.5e-75 | |
| TIGR_CMR|CHY_2223 | 716 | CHY_2223 "GTP pyrophosphokinas | 0.318 | 0.364 | 0.425 | 2.5e-75 | |
| TIGR_CMR|BA_4637 | 727 | BA_4637 "GTP pyrophosphokinase | 0.326 | 0.368 | 0.427 | 3.3e-75 | |
| TIGR_CMR|GSU_2236 | 716 | GSU_2236 "GTP pyrophosphokinas | 0.323 | 0.370 | 0.408 | 7.8e-74 | |
| TIGR_CMR|SO_0359 | 701 | SO_0359 "guanosine-3,5-bis(dip | 0.320 | 0.375 | 0.414 | 7e-65 | |
| UNIPROTKB|P0AG24 | 702 | spoT "guanosine 3'-diphosphate | 0.318 | 0.371 | 0.411 | 5.4e-59 |
| TAIR|locus:2137869 RSH1 "RELA/SPOT homolog 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2973 (1051.6 bits), Expect = 6.7e-310, P = 6.7e-310
Identities = 587/810 (72%), Positives = 664/810 (81%)
Query: 12 ECVNICKLPKGDGSGRYYDCSVLSCAWKAPRALTGFLASTTHPAHSSSLSLGPTGRRNRI 71
ECVNIC L KGDG+ R DCS LSCAWKAPRALTGFLAST HP S S G GR++R+
Sbjct: 12 ECVNICNLTKGDGNARS-DCSALSCAWKAPRALTGFLASTAHPPVCSVYSCGRNGRKSRM 70
Query: 72 NSRC--EAFDVGSWCTEGSDLVLLGKLPRSSLLHVACKRWRL-CLSPSVSSDAFKEDSPE 128
+ C + ++ +E V + + +S L KRW L C+S SS A + + E
Sbjct: 71 KA-CAWQRYEYEVGFSEAPYFVNVRNILKSRLSCGGHKRWELYCVSAESSSGASSDVTVE 129
Query: 129 RLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELD 188
LWEDL P+ISYL ELE V++ L LAFEAH GQKRRSGEPFIIHPV VARILGELELD
Sbjct: 130 TLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILGELELD 189
Query: 189 WESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDV 248
WESI AGLLHDTVEDTN +TFE+IEEEFGATVR IVEGETKVSKLGKLKCK E+ ++QDV
Sbjct: 190 WESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKLKCKTESETIQDV 249
Query: 249 KADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLG 308
KADDLRQMFLAMT+EVRVIIVKLADRLHNMRTL HMPPHKQSSIA ETLQVFAPLAKLLG
Sbjct: 250 KADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIAGETLQVFAPLAKLLG 309
Query: 309 MYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMT 368
MY IKSELENLSFMY +AEDY +V R+A+LYKEHEKEL EAN+IL+KKIEDDQFLDL+T
Sbjct: 310 MYSIKSELENLSFMYVSAEDYDRVTSRIANLYKEHEKELTEANRILVKKIEDDQFLDLVT 369
Query: 369 VKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQ-LRIIIKPKPCSGVGPLCSPQQICYH 427
V T++RSVCKE YSIYKA LKS+GSIN+ NQIAQ LRI++KPKP GVGPLCSPQQICYH
Sbjct: 370 VNTDVRSVCKETYSIYKAALKSKGSINDYNQIAQQLRIVVKPKPSVGVGPLCSPQQICYH 429
Query: 428 VLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAE 487
VLGLVH IW PIPR +KDYIATPKPNGYQSLHTT+IPFLYESMFRLEVQIRTEEMDLIAE
Sbjct: 430 VLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAE 489
Query: 488 RGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNM 547
RGIA +Y+G+ TGLVG+A P GR+ RGKT CLNNA+ ALR+ WLNAIREWQEEFVGNM
Sbjct: 490 RGIAVYYNGKSLSTGLVGNAVPLGRNSRGKTGCLNNADFALRVGWLNAIREWQEEFVGNM 549
Query: 548 TSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNL 607
+SREFVDTITRDLLGSRVFVFTP+GEIKNLPKGATVVDYAY+IHTEIGNKMVAAKVNGNL
Sbjct: 550 SSREFVDTITRDLLGSRVFVFTPKGEIKNLPKGATVVDYAYLIHTEIGNKMVAAKVNGNL 609
Query: 608 VSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASE 667
VSPTHVL NAEVVEI+TYNALSSKSAFQRHKQWL+HAKTRSARHKIM+FLREQAA A+E
Sbjct: 610 VSPTHVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLREQAAQCAAE 669
Query: 668 ITADTVGDFVADSGEESEVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDNAS 727
IT D V DFVADS +S+VEDL++ S++ WEKIL+NV Q S ++ + N S
Sbjct: 670 ITQDQVNDFVADS--DSDVEDLTEDSRKSLQWWEKILVNVKQFQSQDKSRDTTPAPQNGS 727
Query: 728 LWAPKVNGKHNKRVHYVGSKAEGELSSQENSFAKMMHANVPMYKEVLPGLESWQASKIAT 787
+WAPKVNGKHNK + S E E + A+++ AN+P YKEVLPGL+SW+ SKIAT
Sbjct: 728 VWAPKVNGKHNKAIKN-SSSDEPEFLLPGDGIARILPANIPAYKEVLPGLDSWRDSKIAT 786
Query: 788 WHNLEGHSIQWFSVVCIDRRGNFHSVEIVM 817
WH+LEG SI+W VV +DR+G V V+
Sbjct: 787 WHHLEGQSIEWLCVVSMDRKGIIAEVTTVL 816
|
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| TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_0303 CBU_0303 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_0359 SO_0359 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.6 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.6.5 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 820 | |||
| COG0317 | 701 | COG0317, SpoT, Guanosine polyphosphate pyrophospho | 1e-166 | |
| TIGR00691 | 683 | TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp | 1e-144 | |
| PRK11092 | 702 | PRK11092, PRK11092, bifunctional (p)ppGpp syntheta | 1e-118 | |
| PRK10872 | 743 | PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos | 3e-70 | |
| pfam13328 | 156 | pfam13328, HD_4, HD domain | 1e-51 | |
| smart00954 | 111 | smart00954, RelA_SpoT, Region found in RelA / SpoT | 8e-35 | |
| pfam04607 | 116 | pfam04607, RelA_SpoT, Region found in RelA / SpoT | 8e-34 | |
| cd01668 | 60 | cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (S | 1e-30 | |
| cd05399 | 129 | cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( | 2e-29 | |
| pfam02824 | 60 | pfam02824, TGS, TGS domain | 7e-22 | |
| cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrR | 4e-10 | |
| pfam01966 | 111 | pfam01966, HD, HD domain | 9e-08 | |
| cd00077 | 145 | cd00077, HDc, Metal dependent phosphohydrolases wi | 1e-06 | |
| smart00471 | 124 | smart00471, HDc, Metal dependent phosphohydrolases | 1e-06 | |
| cd01669 | 76 | cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-termina | 5e-06 | |
| COG2357 | 231 | COG2357, COG2357, PpGpp synthetase catalytic domai | 1e-05 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 2e-05 | |
| PRK12444 | 639 | PRK12444, PRK12444, threonyl-tRNA synthetase; Revi | 6e-05 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 1e-04 | |
| cd01666 | 75 | cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall | 4e-04 | |
| pfam10957 | 60 | pfam10957, DUF2758, Protein of unknown function (D | 0.002 |
| >gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Score = 497 bits (1282), Expect = e-166
Identities = 215/531 (40%), Positives = 310/531 (58%), Gaps = 60/531 (11%)
Query: 130 LWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDW 189
E+L +++ P +++A A +AH GQ R+SGEP+I HP+EVA IL EL +D
Sbjct: 8 ELEELLDSLATYLPPVDIELKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDM 67
Query: 190 ESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVK 249
E++AA LLHDT+EDT V T E IEE FG V ++VEG TK+ K+G+L + E +
Sbjct: 68 ETLAAALLHDTIEDTPV-TEELIEEIFGKEVAKLVEGVTKLKKIGQLSSEEEL------Q 120
Query: 250 ADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGM 309
A++LR+M LAM +++RV+++KLADRLHN+RTL ++ K+ IA ETL ++APLA LG+
Sbjct: 121 AENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGI 180
Query: 310 YQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTV 369
QIK ELE+LSF Y + + Y ++ + + + E E+ +E L ++++ +
Sbjct: 181 GQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG------I 234
Query: 370 KTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVL 429
K E+ K YSIY+ + K + S +E+ + +RII+ CY L
Sbjct: 235 KAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVD------------TIPDCYTAL 282
Query: 430 GLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERG 489
G+VH +W PIP DYIA PKPNGYQSLHTT+I +EVQIRT+EM IAE G
Sbjct: 283 GIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVI---GPEGKPVEVQIRTKEMHEIAELG 339
Query: 490 IAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTS 549
+AAH+ R G + +I+WL + EWQEE + S
Sbjct: 340 VAAHW-----------------RYKEGGSAYEE------KIAWLRQLLEWQEE-SAD--S 373
Query: 550 REFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS 609
EF++ + DL RV+VFTP+G++ +LPKGAT +D+AY +HT+IG++ + AKVNG +V
Sbjct: 374 GEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVNGRIVP 433
Query: 610 PTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQ 660
T L + VEIIT SK A + WL T AR KI + ++Q
Sbjct: 434 LTTKLQTGDQVEIIT-----SKHAGPS-RDWLNFVVTSRARAKIRAWFKKQ 478
|
Length = 701 |
| >gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222047 pfam13328, HD_4, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins | Back alignment and domain information |
|---|
| >gnl|CDD|133438 cd01668, TGS_RelA_SpoT, TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|217243 pfam02824, TGS, TGS domain | Back alignment and domain information |
|---|
| >gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >gnl|CDD|216815 pfam01966, HD, HD domain | Back alignment and domain information |
|---|
| >gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|133439 cd01669, TGS_Ygr210_C, TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|183530 PRK12444, PRK12444, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >gnl|CDD|151404 pfam10957, DUF2758, Protein of unknown function (DUF2758) | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases | 100.0 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 100.0 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 100.0 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 100.0 | |
| KOG1157 | 543 | consensus Predicted guanosine polyphosphate pyroph | 100.0 | |
| PF13328 | 153 | HD_4: HD domain; PDB: 3NR1_B. | 100.0 | |
| PF04607 | 115 | RelA_SpoT: Region found in RelA / SpoT proteins; I | 99.93 | |
| cd05399 | 129 | NT_Rel-Spo_like Nucleotidyltransferase (NT) domain | 99.93 | |
| COG2357 | 231 | PpGpp synthetase catalytic domain [General functio | 99.91 | |
| PF02824 | 60 | TGS: TGS domain; InterPro: IPR004095 The TGS domai | 99.73 | |
| cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate | 99.26 | |
| cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma | 99.18 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.12 | |
| cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote | 98.97 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 98.89 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 98.88 | |
| cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, | 98.59 | |
| cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma | 98.44 | |
| cd01667 | 61 | TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn | 98.43 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 98.38 | |
| TIGR03276 | 179 | Phn-HD phosphonate degradation operons associated | 98.0 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 97.92 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 97.4 | |
| PRK05659 | 66 | sulfur carrier protein ThiS; Validated | 97.33 | |
| PRK06437 | 67 | hypothetical protein; Provisional | 97.23 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 97.15 | |
| cd00565 | 65 | ThiS ThiaminS ubiquitin-like sulfur carrier protei | 97.09 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 97.01 | |
| PRK07440 | 70 | hypothetical protein; Provisional | 96.86 | |
| PRK06944 | 65 | sulfur carrier protein ThiS; Provisional | 96.83 | |
| PRK01777 | 95 | hypothetical protein; Validated | 96.82 | |
| TIGR01683 | 64 | thiS thiamine biosynthesis protein ThiS. This mode | 96.69 | |
| PRK08364 | 70 | sulfur carrier protein ThiS; Provisional | 96.59 | |
| PRK07696 | 67 | sulfur carrier protein ThiS; Provisional | 96.59 | |
| PRK08053 | 66 | sulfur carrier protein ThiS; Provisional | 96.52 | |
| COG2104 | 68 | ThiS Sulfur transfer protein involved in thiamine | 96.24 | |
| PRK06488 | 65 | sulfur carrier protein ThiS; Validated | 96.0 | |
| PLN02799 | 82 | Molybdopterin synthase sulfur carrier subunit | 95.55 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 95.3 | |
| PF03658 | 84 | Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 | 95.28 | |
| PRK06083 | 84 | sulfur carrier protein ThiS; Provisional | 94.98 | |
| PRK05863 | 65 | sulfur carrier protein ThiS; Provisional | 94.82 | |
| cd00754 | 80 | MoaD Ubiquitin domain of MoaD-like proteins. MoaD | 94.54 | |
| PF14451 | 81 | Ub-Mut7C: Mut7-C ubiquitin | 94.4 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 94.12 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 93.78 | |
| PF02597 | 77 | ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam | 93.49 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 91.11 | |
| TIGR01682 | 80 | moaD molybdopterin converting factor, subunit 1, n | 90.65 | |
| PF06071 | 84 | YchF-GTPase_C: Protein of unknown function (DUF933 | 89.54 | |
| COG2914 | 99 | Uncharacterized protein conserved in bacteria [Fun | 87.56 | |
| PLN02837 | 614 | threonine-tRNA ligase | 86.96 | |
| cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents T | 83.14 | |
| TIGR01687 | 88 | moaD_arch MoaD family protein, archaeal. Members o | 81.62 | |
| PRK12703 | 339 | tRNA 2'-O-methylase; Reviewed | 80.62 |
| >COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-162 Score=1401.48 Aligned_cols=621 Identities=38% Similarity=0.599 Sum_probs=557.6
Q ss_pred CChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccC
Q 003432 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (820)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT 204 (820)
.+.+++.+.+. .+.++.+.+ +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++|||
T Consensus 7 ~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt 82 (701)
T COG0317 7 VELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDT 82 (701)
T ss_pred ccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcC
Confidence 34444444443 455555566 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCC
Q 003432 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (820)
Q Consensus 205 ~~~T~eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~ 284 (820)
+ +|.++|++.||++|++||+||||+.+++++.. ....|+||+|+||+||++|+||+|||||||||||||+..+
T Consensus 83 ~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~ 155 (701)
T COG0317 83 P-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNL 155 (701)
T ss_pred C-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccC
Confidence 9 89999999999999999999999998753321 2345899999999999999999999999999999999998
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003432 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (820)
Q Consensus 285 p~~kq~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l 364 (820)
+++||+++|+||++|||||||||||+++|||||||||+|++|++|+.|++.|.+.+.+|++++++|...|++.|.+.
T Consensus 156 ~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~--- 232 (701)
T COG0317 156 DEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAA--- 232 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003432 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (820)
Q Consensus 365 ~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~k 444 (820)
|+.++|.||+||+||||+||++|+..|++|+|++||||||++. .|||++||+||.+|+|+|+|||
T Consensus 233 ---gi~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~------------~dCY~~LGiVH~~~kp~PgrFK 297 (701)
T COG0317 233 ---GIKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI------------PDCYTALGIVHTLWKPIPGEFD 297 (701)
T ss_pred ---CCeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh------------HHHHHHHHHHHhcCcCCCCccc
Confidence 7899999999999999999999999999999999999999864 6999999999999999999999
Q ss_pred ccccCCCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchh
Q 003432 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (820)
Q Consensus 445 DyIa~PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
||||+||+||||||||||+++.| .++||||||++||..||+|+||||+||++. .
T Consensus 298 DYIA~PK~NgYQSlHTtv~gp~g---~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~-----------------------~ 351 (701)
T COG0317 298 DYIANPKPNGYQSLHTTVIGPEG---KPVEVQIRTKEMHEIAELGVAAHWRYKEGG-----------------------S 351 (701)
T ss_pred cccccCCCCCCceeEEEEECCCC---ceEEEEEecHHHHHHHhhhHHHHhHhhcCC-----------------------c
Confidence 99999999999999999997654 799999999999999999999999999841 1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhcccccCCCeeeecCCCceEecCCCCcHhHHHhhcccccccceEEEEEC
Q 003432 525 NIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN 604 (820)
Q Consensus 525 ~~~~~~~wl~~l~e~~~~~~~~~~~~ef~~~~k~dL~~~~I~VftP~G~i~~lP~GaT~lDfAy~Iht~lg~~~~~akVN 604 (820)
.....+.||++|++||++.. ++.||++.+|.|||.|+||||||||++++||.||||+||||+|||++|++|+|||||
T Consensus 352 ~~~~~~~Wlr~lle~q~~~~---d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkVn 428 (701)
T COG0317 352 AYEEKIAWLRQLLEWQEESA---DSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKVN 428 (701)
T ss_pred hhhHHHHHHHHHHHHHHhcC---CcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEEC
Confidence 12356799999999999862 368999999999999999999999999999999999999999999999999999999
Q ss_pred CEecCCCccCCCCCeEEEEeccCCCCCCcCCCChhHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 003432 605 GNLVSPTHVLANAEVVEIITYNALSSKSAFQRHKQWLEHAKTRSARHKIMKFLREQAALSASEITADTVGDFVADSGEES 684 (820)
Q Consensus 605 G~~v~l~~~L~~gd~VeIlT~~~~~~~~~~~p~~~WL~~v~T~~Ar~~ir~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 684 (820)
|++|||+++|++||+|||+|+++. .|+++||+||+|++||+|||+|||++.++.+...|+++|++.|...++.-
T Consensus 429 G~ivpl~~~Lk~Gd~VEIit~k~~------~Ps~~Wl~~v~t~kAR~kIr~~~k~~~re~~i~~G~~lLe~~l~~~g~~~ 502 (701)
T COG0317 429 GRIVPLTTKLQTGDQVEIITSKHA------GPSRDWLNFVVTSRARAKIRAWFKKQDRDENVEAGRELLEKELSRLGLPK 502 (701)
T ss_pred CEEeccceecCCCCEEEEEeCCCC------CCCHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCh
Confidence 999999999999999999999864 59999999999999999999999999999999999999999999766621
Q ss_pred ------------ccccccccccCCchhHHHHHHHHhhcCCCCCCCcccccCCC-CCCCCCeecCcCCcccc------cc-
Q 003432 685 ------------EVEDLSDGSKQDKPLWEKILMNVVQMSSPVRNSKAVCSDDN-ASLWAPKVNGKHNKRVH------YV- 744 (820)
Q Consensus 685 ------------~~~~fy~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~G~~n~~~~------PI- 744 (820)
+.++||.+|+.++-....+.+.+.+..+.. ... ..++ .....+.|.|.++..++ ||
T Consensus 503 ~~~~~l~~~~~~~~edl~a~ig~g~~~~~~v~~~l~~~~~~~--~~~--~~~~~~~~~~~~v~G~~~l~~~~a~CC~Pip 578 (701)
T COG0317 503 ELEELLEKLNFKTVEDLYAAVGAGDIRLNHVVNALQKLNEPP--LEK--LSRKSIGKGGVLVEGVGNLLTHLAKCCQPVP 578 (701)
T ss_pred HHHHHHHHhCCCCHHHHHHHhccCCCCHHHHHHHHHhccccc--hhh--hhccccCCCceEEeccCCceeEeecCCCCCC
Confidence 228999999876555555555544211111 001 0110 01467999999998765 99
Q ss_pred CCcceeeeecCCCCee--eecCCChhhhhhhCCCcccccCCCceecccCCCceee-EEEEEEecccchHHHHHHHhhc
Q 003432 745 GSKAEGELSSQENSFA--KMMHANVPMYKEVLPGLESWQASKIATWHNLEGHSIQ-WFSVVCIDRRGNFHSVEIVMQS 819 (820)
Q Consensus 745 GD~i~G~it~~g~gi~--r~~C~n~~~l~~~~~~rii~~~~~~a~W~~~~~~sf~-~i~V~~~DR~Gll~dvt~vi~~ 819 (820)
||+|+|||| +|+||+ |.+|||+.++....|+|++ +++|+......|. .|.|.+.||.|+|++|+++|++
T Consensus 579 GD~IvG~it-~g~Gi~iHr~dC~~~~~~~~~~per~i-----~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~ 650 (701)
T COG0317 579 GDPIVGYIT-KGRGISIHRQDCPNFLQLAGHAPERVI-----DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLAN 650 (701)
T ss_pred CCcEEEEEe-cCCcEEEehhcChhHHHhhhcCcceEE-----EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHh
Confidence 999999998 999998 9999999999998899999 9999999888999 9999999999999999999986
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
| >KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13328 HD_4: HD domain; PDB: 3NR1_B | Back alignment and domain information |
|---|
| >PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat | Back alignment and domain information |
|---|
| >cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases | Back alignment and domain information |
|---|
| >COG2357 PpGpp synthetase catalytic domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] | Back alignment and domain information |
|---|
| >cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
| >cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
|---|
| >cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
|---|
| >cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA | Back alignment and domain information |
|---|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05659 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >PRK06437 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
| >cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK07440 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK06944 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK01777 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >TIGR01683 thiS thiamine biosynthesis protein ThiS | Back alignment and domain information |
|---|
| >PRK08364 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK07696 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK08053 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK06488 sulfur carrier protein ThiS; Validated | Back alignment and domain information |
|---|
| >PLN02799 Molybdopterin synthase sulfur carrier subunit | Back alignment and domain information |
|---|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
| >PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function | Back alignment and domain information |
|---|
| >PRK06083 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >PRK05863 sulfur carrier protein ThiS; Provisional | Back alignment and domain information |
|---|
| >cd00754 MoaD Ubiquitin domain of MoaD-like proteins | Back alignment and domain information |
|---|
| >PF14451 Ub-Mut7C: Mut7-C ubiquitin | Back alignment and domain information |
|---|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
| >PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer | Back alignment and domain information |
|---|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal | Back alignment and domain information |
|---|
| >PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >COG2914 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
|---|
| >TIGR01687 moaD_arch MoaD family protein, archaeal | Back alignment and domain information |
|---|
| >PRK12703 tRNA 2'-O-methylase; Reviewed | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 820 | ||||
| 1vj7_A | 393 | Crystal Structure Of The Bifunctional Catalytic Fra | 6e-68 | ||
| 3hvz_A | 78 | Crystal Structure Of The Tgs Domain Of The Clolep_0 | 9e-13 | ||
| 2kmm_A | 73 | Solution Nmr Structure Of The Tgs Domain Of Pg1808 | 4e-12 | ||
| 3nr1_A | 178 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 2e-11 | ||
| 3nqw_A | 179 | A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl | 5e-05 |
| >pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 | Back alignment and structure |
|
| >pdb|3HVZ|A Chain A, Crystal Structure Of The Tgs Domain Of The Clolep_03100 Protein From Clostridium Leptum, Northeast Structural Genomics Consortium Target Qlr13a Length = 78 | Back alignment and structure |
| >pdb|2KMM|A Chain A, Solution Nmr Structure Of The Tgs Domain Of Pg1808 From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr122a (418-481) Length = 73 | Back alignment and structure |
| >pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 | Back alignment and structure |
| >pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 | Back alignment and structure |
|---|
Score = 453 bits (1167), Expect = e-153
Identities = 147/438 (33%), Positives = 242/438 (55%), Gaps = 56/438 (12%)
Query: 127 PERLWEDLRPTI-SYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGEL 185
E++ Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L
Sbjct: 5 INLTGEEVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADL 64
Query: 186 ELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSV 245
LD ++A G LHD VEDT++ T + IE +FG VR IV+G V+KLGK++ K S
Sbjct: 65 HLDAVTVACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDG---VTKLGKVEYK----SH 116
Query: 246 QDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAK 305
++ A++ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA
Sbjct: 117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAH 176
Query: 306 LLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLD 365
LG+ +IK ELE+L+F Y N ++ K+ + + +E E +++ + +
Sbjct: 177 RLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQG--- 233
Query: 366 LMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQIC 425
+ ++ K YSIY+ + + +++ + +R +++ +
Sbjct: 234 ---LFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQS------------DV 278
Query: 426 YHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLI-PFLYESMFRLEVQIRTEEMDL 484
Y ++G +H +W P+P KDYIA PK NGYQS+HTT+ P +E+QIRT+EM
Sbjct: 279 YAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPK-----GPIEIQIRTKEMHQ 333
Query: 485 IAERGIAAH--YSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEE 542
+AE G+AAH Y +G +N A + ++W+ + E Q+
Sbjct: 334 VAEYGVAAHWAYK-------------------KGVRGKVNQAEQKVGMNWIKELVELQDA 374
Query: 543 FVGNMTSREFVDTITRDL 560
G+ + +FVD++
Sbjct: 375 SNGD--AVDFVDSLEHHH 390
|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 | Back alignment and structure |
|---|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Length = 78 | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Length = 73 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Length = 224 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| 1vj7_A | 393 | Bifunctional RELA/SPOT; HD domain, alpha beta 2-la | 100.0 | |
| 3l9d_A | 255 | SMU.1046C, putative GTP pyrophosphokinase; transfe | 100.0 | |
| 2be3_A | 226 | GTP pyrophosphokinase; structural genomics, PSI, p | 100.0 | |
| 3nqw_A | 179 | CG11900; stringent response, pyrophosphohydrolase, | 100.0 | |
| 3nr1_A | 178 | HD domain-containing protein 3; stringent response | 99.97 | |
| 3hvz_A | 78 | Uncharacterized protein; alpha-beta protein, struc | 99.87 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.7 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 99.46 | |
| 2kmm_A | 73 | Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy | 99.38 | |
| 1wwt_A | 88 | Threonyl-tRNA synthetase, cytoplasmic; TGS domain, | 99.37 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.29 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.18 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 98.94 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 96.93 | |
| 1f0z_A | 66 | THis protein; ubiquitin fold, transport protein; N | 96.87 | |
| 1tyg_B | 87 | YJBS; alpha beta barrel, protein-protein complex, | 96.87 | |
| 1rws_A | 77 | Hypothetical protein PF1061; residual dipolar coup | 96.82 | |
| 2hj1_A | 97 | Hypothetical protein; structural genomics, PSI, pr | 96.78 | |
| 2l32_A | 74 | Small archaeal modifier protein 2; protein BIN; NM | 96.74 | |
| 1ryj_A | 70 | Unknown; beta/alpha protein, structural genomics, | 96.53 | |
| 2cu3_A | 64 | Unknown function protein; thermus thermophilus HB8 | 96.44 | |
| 2k5p_A | 78 | THis protein, thiamine-biosynthesis protein; NESG, | 96.33 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.27 | |
| 2kl0_A | 73 | Putative thiamin biosynthesis THis; structural gen | 96.26 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.23 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.09 | |
| 2q5w_D | 77 | Molybdopterin converting factor, subunit 1; MOCO, | 95.32 | |
| 3po0_A | 89 | Small archaeal modifier protein 1; ubiquitin-like | 94.78 | |
| 1vjk_A | 98 | Molybdopterin converting factor, subunit 1; struct | 94.59 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 94.56 | |
| 1fm0_D | 81 | Molybdopterin convertin factor, subunit 1; molybde | 93.31 | |
| 2g1e_A | 90 | Hypothetical protein TA0895; MOAD, molybdopterin, | 90.77 | |
| 2l52_A | 99 | Methanosarcina acetivorans SAMP1 homolog; beta-grA | 87.79 | |
| 3dwg_C | 93 | 9.5 kDa culture filtrate antigen CFP10A; sulfur ca | 87.59 | |
| 3rpf_C | 74 | Molybdopterin converting factor, subunit 1 (MOAD); | 86.94 | |
| 3dto_A | 223 | BH2835 protein; all alpha-helical protein, structu | 84.25 | |
| 1v8c_A | 168 | MOAD related protein; riken structural genomics/pr | 82.8 |
| >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-101 Score=857.29 Aligned_cols=376 Identities=38% Similarity=0.618 Sum_probs=308.6
Q ss_pred CChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhccccccC
Q 003432 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (820)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVEDT 204 (820)
++.+.+.+.+. .|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++|+|.++++||||||+||||
T Consensus 7 ~~~~~l~~~~~---~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt 83 (393)
T 1vj7_A 7 LTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDT 83 (393)
T ss_dssp CCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcC
Confidence 44444444332 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccCC
Q 003432 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (820)
Q Consensus 205 ~~~T~eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~~ 284 (820)
+ +|.++|++.||++|+.||+||||++++.. . +....|+|++|||||||++|+||++|||||||||||++..+
T Consensus 84 ~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~~---~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~ 155 (393)
T 1vj7_A 84 D-ITLDNIEFDFGKDVRDIVDGVTKLGKVEY---K----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHL 155 (393)
T ss_dssp S-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC--
T ss_pred C-CCHHHHHHHhCHHHHHHHHHHHhcccCCc---c----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhC
Confidence 9 89999999999999999999999887541 1 12456899999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 003432 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (820)
Q Consensus 285 p~~kq~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~P~~y~~i~~~l~~~r~~~e~~i~~~~~~L~~~L~~~~~l 364 (820)
|+++|+++|+||++|||||||||||++||||||||||+|++|++|+.|.++|.+.+.+|+.+++.+...|++.|.+.
T Consensus 156 ~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~--- 232 (393)
T 1vj7_A 156 RKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ--- 232 (393)
T ss_dssp ----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred ccccceeEEEEEecChHHHHHHHHhcCCCCCccceeEEEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 003432 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (820)
Q Consensus 365 ~~~~i~~~V~~R~K~~ySI~~Km~rk~~~~~eI~Di~giRIIv~~~~c~~~~~~~~~~~dCY~vlg~Ih~~~~pip~r~k 444 (820)
|+++.|+||+|++||||+||+||+.+|++|+|++|||||+++ ..|||.++|+||+.|+|+|++||
T Consensus 233 ---gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~------------~~dcy~vl~~i~~~~~~~~~~~k 297 (393)
T 1vj7_A 233 ---GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMET------------QSDVYAMVGYIHELWRPMPGRFK 297 (393)
T ss_dssp ---TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESS------------HHHHHHHHHHHHHHSCBCTTCCE
T ss_pred ---CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECC------------HHHHHHHHHHHHhcCCCCCCccc
Confidence 788999999999999999999999999999999999999764 57999999999999999999999
Q ss_pred ccccCCCCCCcceeEEEEeccCCCCceeEEEEEechHHHHHHHHHHHhhccCcccccccccCCCCCCCCCCCcccccchh
Q 003432 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (820)
Q Consensus 445 DyIa~PK~NGYqSLHttV~~~~~~~~~~vEVQIRT~~Mh~~AE~G~aahwkyK~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (820)
|||++||+||||||||+|.++ .+ +|||||||..||.|||+||++||+||++.. . .. ...
T Consensus 298 DyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~-----------~----~~--~~~ 356 (393)
T 1vj7_A 298 DYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR-----------G----KV--NQA 356 (393)
T ss_dssp ETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC--------------------------------
T ss_pred ccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCC-----------c----cc--chh
Confidence 999999999999999999864 35 999999999999999999999999997421 0 00 011
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCchhhh
Q 003432 525 NIALRISWLNAIREWQEEFVGNMTSREFV 553 (820)
Q Consensus 525 ~~~~~~~wl~~l~e~~~~~~~~~~~~ef~ 553 (820)
.+.++++||++|++||++.. ++.||+
T Consensus 357 ~~~~~~~wl~~ll~~~~~~~---~~~ef~ 382 (393)
T 1vj7_A 357 EQKVGMNWIKELVELQDASN---GDAVDF 382 (393)
T ss_dssp ------CHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHHHHhcCC---CcHHHH
Confidence 12346799999999998852 356775
|
| >3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 | Back alignment and structure |
|---|
| >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
| >3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 | Back alignment and structure |
|---|
| >1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A | Back alignment and structure |
|---|
| >2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 | Back alignment and structure |
|---|
| >2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} | Back alignment and structure |
|---|
| >1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 | Back alignment and structure |
|---|
| >2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E | Back alignment and structure |
|---|
| >2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A | Back alignment and structure |
|---|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* | Back alignment and structure |
|---|
| >3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A | Back alignment and structure |
|---|
| >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 | Back alignment and structure |
|---|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
| >1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D | Back alignment and structure |
|---|
| >2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A | Back alignment and structure |
|---|
| >2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} | Back alignment and structure |
|---|
| >3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A | Back alignment and structure |
|---|
| >3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 820 | ||||
| d1vj7a1 | 192 | a.211.1.1 (A:5-196) Stringent response-like protei | 4e-50 | |
| d1vj7a2 | 175 | d.218.1.8 (A:197-371) Stringent response-like prot | 7e-21 | |
| d1wxqa2 | 76 | d.15.10.2 (A:320-395) GTP-binding protein PH0525 { | 1e-17 | |
| d2be3a1 | 203 | d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase | 5e-17 | |
| d1nyra2 | 59 | d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS | 9e-16 | |
| d1tkea1 | 62 | d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS | 2e-15 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Score = 172 bits (436), Expect = 4e-50
Identities = 90/194 (46%), Positives = 131/194 (67%), Gaps = 8/194 (4%)
Query: 132 EDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES 191
E + Y++ + V++AL A AH Q R+SGEP+I+HP++VA IL +L LD +
Sbjct: 7 EVVALAAKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVT 66
Query: 192 IAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKAD 251
+A G LHD VEDT++ T + IE +FG VR IV+G TK+ K E S ++ A+
Sbjct: 67 VACGFLHDVVEDTDI-TLDNIEFDFGKDVRDIVDGVTKLGK-------VEYKSHEEQLAE 118
Query: 252 DLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311
+ R+M +AM++++RVI+VKLADRLHNMRTL H+ KQ I+ ET++++APLA LG+ +
Sbjct: 119 NHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISR 178
Query: 312 IKSELENLSFMYTN 325
IK ELE+L+F Y N
Sbjct: 179 IKWELEDLAFRYLN 192
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76 | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59 | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| d1vj7a1 | 192 | Stringent response-like protein RelA N-terminal do | 100.0 | |
| d1vj7a2 | 175 | Stringent response-like protein RelA domain 2 {Str | 100.0 | |
| d2be3a1 | 203 | Putative GTP pyrophosphokinase SP1097 {Streptococc | 99.96 | |
| d1tkea1 | 62 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.66 | |
| d1wxqa2 | 76 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.62 | |
| d1nyra2 | 59 | Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi | 99.6 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 96.79 | |
| d1zud21 | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 96.63 | |
| d2hj1a1 | 77 | Hypothetical protein HI0395 {Haemophilus influenza | 95.27 | |
| d1tygb_ | 65 | Thiamin biosynthesis sulfur carrier protein ThiS { | 94.65 | |
| d2cu3a1 | 63 | Uncharacterised protein TTHA0675 {Thermus thermoph | 94.64 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 94.47 | |
| d1rwsa_ | 68 | Hypothetical protein PF1061 {Archaeon Pyrococcus f | 94.0 | |
| d1vjka_ | 88 | Molybdopterin synthase subunit MoaD {Pyrococcus fu | 93.63 | |
| d1jala2 | 85 | YchF GTP-binding protein, C-terminal domain {Haemo | 85.3 | |
| d1ni3a2 | 82 | YchF GTP-binding protein, C-terminal domain {Fissi | 84.58 |
| >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: HD domain domain: Stringent response-like protein RelA N-terminal domain species: Streptococcus equisimilis [TaxId: 119602]
Probab=100.00 E-value=1.4e-52 Score=423.04 Aligned_cols=191 Identities=47% Similarity=0.730 Sum_probs=163.3
Q ss_pred CCChHHHHHhHhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCcccchHHHHHHHHHHcCCCHHHHHHHhhcccccc
Q 003432 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (820)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~ILaelglD~~tIiAALLHDvVED 203 (820)
+++.|.++..+. .|+++.|.++|++|+.||.++|.||+|++|+||+.||++||.||+++++|.++++||||||++||
T Consensus 2 ~~~~e~~l~~~~---~yl~~~d~~~i~~A~~~A~~~H~gq~r~sG~py~~H~~~VA~iL~~~~~d~~~i~AalLhd~~ed 78 (192)
T d1vj7a1 2 NLTGEEVVALAA---KYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVED 78 (192)
T ss_dssp CCCHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHcCCcccChHHHHHHHHHHHHHHHHhcCChHHhhhhheechhhh
Confidence 556666655443 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhChHHHHHHhhhcccccccccccccCCcchhhhhHHHHHHHHHhccCCceEEeeeehhhhhccccccC
Q 003432 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (820)
Q Consensus 204 T~~~T~eeI~~~FG~~Va~LV~glTkvs~l~~~~~~~~~~~~~~~qae~~RkmLLam~~D~RViLIKLADRLhNMRtL~~ 283 (820)
|+ +|.++|++.||++|+.+|+++|++...... .....+++++|+|+++|.+|+||++|||||||||||++..
T Consensus 79 t~-~t~e~I~~~FG~~Va~lV~~ltk~~~~~~~-------~~~~~~ae~~rkmlla~~~d~rvvlIKLADRLhnlrtl~~ 150 (192)
T d1vj7a1 79 TD-ITLDNIEFDFGKDVRDIVDGVTKLGKVEYK-------SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKH 150 (192)
T ss_dssp SS-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC-
T ss_pred ch-hHHHHHHHhcchhHHHHHHHHHhhcccccc-------ccchHHHHHHHHHHHhhccCceeehhHHHHHHhhcccccc
Confidence 99 899999999999999999999998775421 1234678999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhCHHHHHHHHhcccccccC
Q 003432 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTN 325 (820)
Q Consensus 284 ~p~~kq~~iA~ETl~iYaPLA~RLGl~~iK~ELEDLsf~~l~ 325 (820)
+|+++|+++|+||+++|+|||+|||||+||||||||||+||+
T Consensus 151 ~~~~k~~~~a~Et~~iyaplA~rLG~~~ik~eLEdl~f~~L~ 192 (192)
T d1vj7a1 151 LRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN 192 (192)
T ss_dssp -----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
|
| >d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} | Back information, alignment and structure |
|---|
| >d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
| >d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|