Citrus Sinensis ID: 003433
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SIC9 | 918 | Pentatricopeptide repeat- | yes | no | 0.898 | 0.802 | 0.687 | 0.0 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.812 | 0.772 | 0.261 | 3e-77 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.646 | 0.647 | 0.278 | 1e-68 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.532 | 0.585 | 0.281 | 7e-56 | |
| O64624 | 822 | Pentatricopeptide repeat- | no | no | 0.623 | 0.621 | 0.276 | 5e-54 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.426 | 0.555 | 0.308 | 2e-53 | |
| P0C894 | 761 | Putative pentatricopeptid | no | no | 0.618 | 0.666 | 0.287 | 6e-53 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.603 | 0.822 | 0.258 | 7e-52 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.458 | 0.686 | 0.304 | 1e-51 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.6 | 0.794 | 0.263 | 2e-51 |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/769 (68%), Positives = 611/769 (79%), Gaps = 32/769 (4%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP----NPKPFHS 81
NNH + +P+ RP+ S SPR + P ++ TVAP P F
Sbjct: 76 NNHRQTRQNPNYNHRPYGASS-----------SPRGSAPPPSSVATVAPAQLSQPPNF-- 122
Query: 82 LSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVS 141
SPL + KS+L+ DFSGRRSTRFVSKMHFGR K M+TRHS AE+AL + F+ DD
Sbjct: 123 -SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEM 181
Query: 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201
++ FE KLCG+DD T+++RELGNR E KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 182 FHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMIS 241
Query: 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261
LGR GKV +AK IFETA GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+P
Sbjct: 242 TLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRP 301
Query: 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
NLVTYNAVIDACGKGG++FK V + FD+M RNGVQPDRITFNSLLAVCSRGGLWEAARNL
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
F+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MP K I PNVV+YST+IDG+AK
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441
AGR D+ALN+F EM++LGI LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501
YNALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM+IFREFK
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT +
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Query: 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE-N 620
+ D S+ L A+ + N++I++FGQL E + K+
Sbjct: 602 RSA-DYSNGGSLPFSSSALSALTETE----------GNRVIQLFGQLTTESNNRTTKDCE 650
Query: 621 RCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680
QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VYG
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYG 710
Query: 681 VAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740
V HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG+
Sbjct: 711 VVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGR 770
Query: 741 RRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLL 789
RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+L
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVL 819
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 190/727 (26%), Positives = 378/727 (51%), Gaps = 61/727 (8%)
Query: 96 FSGRRSTRFVSKMHFGRPKIAMST-RHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLC 154
FSG+ + + G P +++ ++S E ++ +++ S+ L F+ KL
Sbjct: 47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRG-SIARCLDIFKNKLS 104
Query: 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214
+D+ + +E RG+W ++++ F + ++R+ + + MIS+LGR G +D
Sbjct: 105 -LNDFALVFKEFAGRGDWQRSLRLFKY-MQRQIWCKPNEHIYTIMISLLGREGLLDKCLE 162
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+F+ ++G +V++++ALI+AYGR+G + ++ + + MK + P+++TYN VI+AC
Sbjct: 163 VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACA 222
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+GG+D++ ++ +F +M G+QPD +T+N+LL+ C+ GL + A +F M GI D+
Sbjct: 223 RGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDL 282
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TY+ L++ K +++ +++ EM + P++ +Y+ +++ YAK+G + +A+ +F +
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M+ G + +Y+ +L+++ + GR+++ + EM+SS DA TYN L+ +G+ G
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+ EV +F M + + P++ TY +I KGGL+++A +I + + Y+
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDD-VERD 570
+I+A + L E A+ + M + G P++ T++S++ +F R +E + V+
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 571 LGKQKESANLDAMCSQDDKDVQEAGRT-----------DNQIIKV------FGQLVAEKA 613
+ + +++ N + +EA +T D + ++ F +LV E
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE-- 580
Query: 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL 673
CR++ F++M I P+++ + +L + ++D + LLEE +
Sbjct: 581 --------CREQ-------FEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEE--M 623
Query: 674 FDNQV---YGVAHGLLMG-YRDNI-WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728
N+V + V ++ G Y D+ W + D++ FYNAL D LW GQ
Sbjct: 624 LSNRVSNIHQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQ 683
Query: 729 KRGAQLVVLEGKRRQVWEN-------VWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781
K A V+ E +R ++ VWS +D+H MS G + WL +I+ ++ +
Sbjct: 684 KERAARVLNEATKRGLFPELFRKNKLVWS---VDVHRMSEGGMYTALSVWLNDINDMLLK 740
Query: 782 GHELPKL 788
G +LP+L
Sbjct: 741 G-DLPQL 746
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 157/564 (27%), Positives = 293/564 (51%), Gaps = 34/564 (6%)
Query: 162 LLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETAL 220
L+ LG ++ A++ F + +K+++ ++ + + +IS+LG+ G+V A N+F
Sbjct: 141 FLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQ 200
Query: 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF 280
+G+ VY++++LISA+ SG +EA++VF M+ KP L+TYN +++ GK G +
Sbjct: 201 EDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPW 260
Query: 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTL 340
+ + + M +G+ PD T+N+L+ C RG L + A +F EM G D TYN L
Sbjct: 261 NKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNAL 320
Query: 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400
LD K + A +++ EM SP++VTY+++I YA+ G LD+A+ + ++M G
Sbjct: 321 LDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGT 380
Query: 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460
D +Y T+LS + + G+ E A+ + +EM ++G + + T+NA + YG +GK+ E+ +
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520
+F+++ +SP+++T++TL+ V+ + G+ E +F+E K+AG + ++ LI A
Sbjct: 441 IFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYS 500
Query: 521 KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580
+ G E A+++ M G+ P++ TYN+++ A R E + E+ L +
Sbjct: 501 RCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS----EKVLAE------- 549
Query: 581 DAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK 640
E GR + L A G +EI + + ++++
Sbjct: 550 -----------MEDGRCKPNELTYCSLLHAYANG---------KEIGLMHSLAEEVYSGV 589
Query: 641 IKPNVVTFSAILNACSRCNSFEDASMLLEEL--RLFDNQVYGVAHGLLMGYRDNIWVQAL 698
I+P V ++ CS+C+ +A EL R F + + + + R + +A
Sbjct: 590 IEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKAN 649
Query: 699 SLFDEVKLMDSSTASAFYNALTDM 722
+ D +K + + A YN+L M
Sbjct: 650 GVLDYMKERGFTPSMATYNSLMYM 673
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 246/480 (51%), Gaps = 43/480 (8%)
Query: 219 ALNEGYG---NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
+L E Y +T F ++ +Y R +A+S+ + + + P +++YNAV+DA +
Sbjct: 122 SLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF 335
+ +F +ML + V P+ T+N L+ G + A LF++M +G ++
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395
TYNTL+D CK ++D F+++ M K + PN+++Y+ +I+G + GR+ + + +EM
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Query: 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455
G LD V+YNT++ Y K G F +AL++ EM G+ +TY +L+ K G
Sbjct: 302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515
+ +QM+ + PN TY+TL+D +S+ G EA ++ RE G VV Y+AL
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575
I+ C G +E A+++L++M ++G+ P+VV+Y++++ F RS DV+ L ++
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY-------DVDEALRVKR 474
Query: 576 E-------------SANLDAMCSQDDKDVQEAGRTDNQIIKV--------FGQLVAEKAG 614
E S+ + C Q + +EA ++++V + L+
Sbjct: 475 EMVEKGIKPDTITYSSLIQGFCEQ--RRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532
Query: 615 QGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
+G E L + +M + + P+VVT+S ++N ++ + +A LL L+LF
Sbjct: 533 EGDLEKA--------LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL--LKLF 582
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 145/525 (27%), Positives = 257/525 (48%), Gaps = 14/525 (2%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKN 214
D L++ L + G W +A+ F + V K D ++ + ILGR + +A
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAK 196
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+ + + Y V A++ ++ AY R+G ++AI +F MK P LVTYN ++D G
Sbjct: 197 LLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFG 256
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
K G ++ ++ + D+M G++ D T +++L+ C+R GL A+ F E+ G +
Sbjct: 257 KMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGT 316
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TYN LL K A ++ EM + + VTY+ ++ Y +AG +A +
Sbjct: 317 VTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEM 376
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M G+ + ++Y TV+ Y K G+ +EAL + M+ +G + TYNA+L GK+ +
Sbjct: 377 MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSR 436
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+E+ +M MK++ SPN T++T++ + G+ K ++FRE K G + D ++
Sbjct: 437 SNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDDVERDL 571
LI A + G A + EMT+ G V TYN++++A R + E + D++
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKG 556
Query: 572 GKQKESA-NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGK---KENRCRQEIL 627
K E++ +L C + R +N+I + GQ+ +CR +
Sbjct: 557 FKPTETSYSLMLQCYAKGGNYLGIERIENRIKE--GQIFPSWMLLRTLLLANFKCRA-LA 613
Query: 628 CILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672
F K KP++V F+++L+ +R N ++ A +LE +R
Sbjct: 614 GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 203/357 (56%), Gaps = 7/357 (1%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
K A + + + +G + + +++ + G A ++ N M++ L+P ++ YN
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 268 AVIDACGKGGVDFKHV---VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
+ID K +KH+ + +F +M G++P+ +T++SL++ G W A L ++
Sbjct: 261 TIIDGLCK----YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ R I+ D+FT++ L+DA K ++ A ++ EM ++I P++VTYS++I+G+ R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
LD+A MF M D V+YNT++ + K R EE + V +EM G+ + VTYN
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G + G D + +F++M +D V PN++TY+TL+D K G ++AM +F +++
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
++ + Y+ +I+ +CK G VE L ++ +G++P+VV YN++I F R + E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 148/515 (28%), Positives = 251/515 (48%), Gaps = 8/515 (1%)
Query: 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221
L L + G +AIQCF+ +KR R + + + ++ +LGK D K F+ +
Sbjct: 198 LFSVLIDLGMLEEAIQCFS-KMKRF-RVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIG 255
Query: 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281
G TV+ ++ +I + G + A +F MK L P+ VTYN++ID GK G
Sbjct: 256 AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG-RLD 314
Query: 282 HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341
V F++M +PD IT+N+L+ + G + EM G+ ++ +Y+TL+
Sbjct: 315 DTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374
Query: 342 DAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401
DA CK M A + +M + PN TY+++ID K G L DA + +EM +G+
Sbjct: 375 DAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVE 434
Query: 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461
+ V+Y ++ R +EA + +M+++G+ + +YNAL+ G+ K D +
Sbjct: 435 WNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALEL 494
Query: 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521
++K + P+LL Y T I + A + E K+ G+KA+ ++Y+ L+DA K
Sbjct: 495 LNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFK 554
Query: 522 NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER---DLGKQKESA 578
+G + LLDEM + I VVT+ +ID ++ VD R D G Q +A
Sbjct: 555 SGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAA 614
Query: 579 NLDAMCSQDDKDVQ-EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQ-EILCILGVFQKM 636
AM KD Q EA T + + G + A + +Q +L L + KM
Sbjct: 615 IFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKM 674
Query: 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEEL 671
++ +K +++ +++++ S CN + A LEE+
Sbjct: 675 AEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 137/529 (25%), Positives = 250/529 (47%), Gaps = 34/529 (6%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
S S + R + +L + + G + +Y + +I+ + R A SV + +
Sbjct: 92 SRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMK 151
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
+P+ T+N +I G V + D M+ NG QPD +T+NS++ R G
Sbjct: 152 LGYEPDTTTFNTLIKGLFLEG-KVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 210
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A +L +M R + D+FTY+T++D++C+ +D A + EM K I +VVTY++++
Sbjct: 211 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLV 270
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
G KAG+ +D + +M I + +++N +L ++ K G+ +EA + KEM + GI
Sbjct: 271 RGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGIS 330
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
+ +TYN L+ GY Q + E M + M + SP+++T+++LI Y + M++
Sbjct: 331 PNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKV 390
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
FR + GL A+ V YS L+ C++G ++ A L EM G+ P+V+TY ++D
Sbjct: 391 FRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCD 450
Query: 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616
+ E ++ E DL K K I ++ ++ G
Sbjct: 451 NGKLEKALEIFE-DLQKSKMDLG----------------------IVMYTTIIEGMCKGG 487
Query: 617 KKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 676
K E+ +F + +KPNV+T++ +++ + S +A++LL ++ N
Sbjct: 488 KVEDA--------WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGN 539
Query: 677 QVYGVAHGLLMG--YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723
+ L+ RD + L +E+K S ++ + DML
Sbjct: 540 APNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/387 (30%), Positives = 208/387 (53%), Gaps = 11/387 (2%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+V LA +I L GY +L++ + R +A+S+ + M KP++V YN
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 268 AVIDACGKGGVDFKHVVEIFD---DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
A+ID+ K K V + FD ++ R G++P+ +T+ +L+ W A L ++
Sbjct: 195 AIIDSLCKT----KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 250
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ + I ++ TY+ LLDA K ++ A E+ EM +I P++VTYS++I+G R
Sbjct: 251 MIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
+D+A MF M G D VSYNT+++ + K R E+ + + +EM G+ + VTYN
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G+ + G D+ + F QM +SP++ TY+ L+ G ++A+ IF + ++
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTV 564
+ D+V Y+ +I +CK G VE A SL ++ +G++P++VTY +++ T+ +
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL----CTKGLL 486
Query: 565 DDVERDLGKQKESANLDAMCSQDDKDV 591
+VE K K+ + C+ D D+
Sbjct: 487 HEVEALYTKMKQEGLMKNDCTLSDGDI 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 249/532 (46%), Gaps = 40/532 (7%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+ MI+ R K+ A ++ A GY FS L++ + G EA+++ + M
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 257 YNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315
+P+LVT + +I+ C KG V + + D M+ G QPD +T+ +L + G
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRV--SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS 226
Query: 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375
A +LF +M R I + Y+ ++D++CK D A + EM K I +VVTYS++
Sbjct: 227 ALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSL 286
Query: 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435
I G G+ DD M EM I D V+++ ++ ++ K G+ EA + EM + GI
Sbjct: 287 IGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGI 346
Query: 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495
D +TYN+L+ G+ K+ E +MF+ M + P+++TYS LI+ Y K + M+
Sbjct: 347 APDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMR 406
Query: 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555
+FRE GL + + Y+ L+ C++G + +A L EM G+ P+VVTY ++D
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615
+ ++ E+ QK L I ++ ++
Sbjct: 467 DNGELNKALEIFEK---MQKSRMTLG--------------------IGIYNIIIHGMCNA 503
Query: 616 GKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR--- 672
K ++ +F + +KP+VVT++ ++ + S +A ML +++
Sbjct: 504 SKVDDA--------WSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555
Query: 673 -LFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723
D+ Y + +G + + ++ L +E+K+ S S+ + DML
Sbjct: 556 CTPDDFTYNILIRAHLG--GSGLISSVELIEEMKVCGFSADSSTIKMVIDML 605
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| 255548407 | 878 | pentatricopeptide repeat-containing prot | 0.948 | 0.886 | 0.785 | 0.0 | |
| 225437600 | 867 | PREDICTED: pentatricopeptide repeat-cont | 0.947 | 0.896 | 0.780 | 0.0 | |
| 449436409 | 868 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.898 | 0.743 | 0.0 | |
| 449518511 | 868 | PREDICTED: pentatricopeptide repeat-cont | 0.951 | 0.898 | 0.743 | 0.0 | |
| 224064580 | 718 | predicted protein [Populus trichocarpa] | 0.817 | 0.933 | 0.789 | 0.0 | |
| 297826581 | 917 | pentatricopeptide repeat-containing prot | 0.897 | 0.802 | 0.688 | 0.0 | |
| 15224671 | 918 | genomes uncoupled 1 protein [Arabidopsis | 0.898 | 0.802 | 0.687 | 0.0 | |
| 357502615 | 849 | Pentatricopeptide repeat-containing prot | 0.929 | 0.897 | 0.530 | 0.0 | |
| 297743996 | 730 | unnamed protein product [Vitis vinifera] | 0.596 | 0.669 | 0.754 | 0.0 | |
| 357502623 | 890 | Pentatricopeptide repeat-containing prot | 0.948 | 0.874 | 0.506 | 0.0 |
| >gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1275 bits (3298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/793 (78%), Positives = 687/793 (86%), Gaps = 15/793 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITATKPYQNHQYP NHLKN HRQ+HH WT+ KVSLTKPPL+PSP
Sbjct: 1 MASTPPHCSITATKPYQNHQYPQNHLKN--HRQTHHH----RWTNQKVSLTKPPLAPSPC 54
Query: 61 NAPKPAATSTTVAPNPKP----FHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIA 116
NAPK AA + FHSLSPL S KS+L+ DFSGRRSTRFVSK+HFGRPK
Sbjct: 55 NAPKAAAAAAAATTTHHTPNPTFHSLSPLQSQKSDLSADFSGRRSTRFVSKLHFGRPKTN 114
Query: 117 MSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAI 176
M+ RH+ VA EAL V + +DD +L ++L FE +LCG DDYTFLLRELGNRG+ +KA+
Sbjct: 115 MN-RHTSVALEALQQVIQYGKDDKALENVLLNFESRLCGPDDYTFLLRELGNRGDSAKAV 173
Query: 177 QCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236
+CF FAV+RE KN+QGKLASAMIS LGRLGKV+LAK +F+TAL EGYG TVYAFSALIS
Sbjct: 174 RCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALIS 233
Query: 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ 296
AYGRSGYC EAI VF+SMK L PNLVTYNAVIDACGKGGV+FK VVEIFD ML NGVQ
Sbjct: 234 AYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQ 293
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356
PDRITFNSLLAVCSRGGLWEAAR LF+ MV +GIDQDIFTYNTLLDA+CKG QMDLAFEI
Sbjct: 294 PDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEI 353
Query: 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
M+EMP KNI PNVVTYSTMIDGYAK GRLDDALNMF+EMKFLG+GLDRVSYNT+LS+YAK
Sbjct: 354 MSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAK 413
Query: 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476
LGRFE+AL VCKEME++GIRKD VTYNALL GYGKQ +YDEVRR+FE+MK VSPNLLT
Sbjct: 414 LGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLT 473
Query: 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536
YSTLIDVYSKGGLYKEAM++FREFKQAGLKADVVLYSALIDALCKNGLVES+V+LLDEMT
Sbjct: 474 YSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMT 533
Query: 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGR 596
KEGIRPNVVTYNSIIDAFGRSA+ +C VDD Q ES L ++ Q+ + Q A +
Sbjct: 534 KEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVES--LSSIVVQEAIESQAADK 591
Query: 597 TDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656
DN+II++FG+L AEKA + K N +QEILCILGVFQKMH+LKIKPNVVTFSAILNACS
Sbjct: 592 EDNRIIEIFGKLAAEKACEAK--NSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACS 649
Query: 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFY 716
RC+SFEDASMLLEELRLFDNQVYGVAHGLLMGYR+N+W+QA SLFDEVKLMDSSTASAFY
Sbjct: 650 RCDSFEDASMLLEELRLFDNQVYGVAHGLLMGYRENVWLQAQSLFDEVKLMDSSTASAFY 709
Query: 717 NALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIH 776
NALTDMLWHFGQKRGAQLVVLEGKRRQVWEN+WS+SCLDLHLMSSGAARAMVHAWLLNI
Sbjct: 710 NALTDMLWHFGQKRGAQLVVLEGKRRQVWENIWSDSCLDLHLMSSGAARAMVHAWLLNIR 769
Query: 777 SIVFEGHELPKLL 789
SIVFEGHELPKLL
Sbjct: 770 SIVFEGHELPKLL 782
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1266 bits (3275), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/791 (78%), Positives = 677/791 (85%), Gaps = 14/791 (1%)
Query: 1 MAS-TPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSP 59
MAS TPPHCSITA KPYQN YP N KN+H+ W+SHKVSLT P PSP
Sbjct: 1 MASPTPPHCSITAAKPYQNLHYPQNPTKNHHNNHH--------WSSHKVSLTNP--LPSP 50
Query: 60 RNAPKPAATSTTVAPNPKP-FHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMS 118
RNA KP A S A N F SLSPLP SKSEL DFSGRRSTRFVSKMHFGRPK A +
Sbjct: 51 RNAAKPGAASPATATNRNSNFPSLSPLPPSKSELTADFSGRRSTRFVSKMHFGRPKTAAA 110
Query: 119 TRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQC 178
RH+ AEEAL H FA DD + +L FE +LCG+DDYTFLLRELGNRGEW+KAI+C
Sbjct: 111 ARHTSTAEEALRHAIRFASDDKGIDSVLLNFESRLCGSDDYTFLLRELGNRGEWAKAIRC 170
Query: 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238
F FAV+RE+R+N+QGKLASAMISILGRLG+V+LAKN+FETALNEGYGNTVYAFSALISAY
Sbjct: 171 FEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAY 230
Query: 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298
GRSGYC EAI VF +MK LKPNLVTYNAVIDACGKGGVDF EIFD+MLRNGVQPD
Sbjct: 231 GRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPD 290
Query: 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358
RITFNSLLAVC RGGLWEAARNLF+EM++RGI+QDIFTYNTLLDA+CKG QMDLAF+IM+
Sbjct: 291 RITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMS 350
Query: 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG 418
EMP K+I PNVVTYST+IDGYAKAGRLD+ALN+F+EMKF IGLDRVSYNT+LSIYAKLG
Sbjct: 351 EMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLG 410
Query: 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478
RFEEAL VCKEMESSGI+KDAVTYNALLGGYGKQGKY+EV+R+FE+MKA+ + PNLLTYS
Sbjct: 411 RFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYS 470
Query: 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538
TLIDVYSKGGLY+EAM++FREFK+AGLKADVVLYSALIDALCKNGLVESAVS LDEMTKE
Sbjct: 471 TLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKE 530
Query: 539 GIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTD 598
GIRPNVVTYNSIIDAFGRS + EC +D + S++L + +D + + + D
Sbjct: 531 GIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVV--EDATESEVGDKED 588
Query: 599 NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRC 658
NQIIK+FGQL AEK KKENR RQEILCIL VF KMH+L IKPNVVTFSAILNACSRC
Sbjct: 589 NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRC 648
Query: 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNA 718
NSFEDASMLLEELRLFDNQVYGVAHGLLMGY DN+WVQA SLFDEVK MDSSTASAFYNA
Sbjct: 649 NSFEDASMLLEELRLFDNQVYGVAHGLLMGYGDNVWVQAQSLFDEVKQMDSSTASAFYNA 708
Query: 719 LTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSI 778
LTDMLWHFGQ+RGAQLVVLEGKRR VWEN+WS SCLDLHLMSSGAARAMVHAWLLNI SI
Sbjct: 709 LTDMLWHFGQRRGAQLVVLEGKRRHVWENMWSNSCLDLHLMSSGAARAMVHAWLLNIRSI 768
Query: 779 VFEGHELPKLL 789
VFEGHELP+LL
Sbjct: 769 VFEGHELPQLL 779
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/789 (74%), Positives = 662/789 (83%), Gaps = 9/789 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITA KPYQ HQYP N+LKN HRQ+ + P T+HK L KP S
Sbjct: 1 MASTPPHCSITAAKPYQTHQYPQNNLKN--HRQNARQNG-PWTTTHKFPLVKPLPSTPGH 57
Query: 61 NAPKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR 120
+A K +T + +PN F SL LP+SKSELA +FSGRRSTRFVSK HFGRPK +M+TR
Sbjct: 58 SATKSTSTPLSQSPN---FPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTR 114
Query: 121 HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFA 180
HS +AEE LH V F +DD SL +IL FE KLCG++DYTFLLRELGNRGE KAI+CF
Sbjct: 115 HSAIAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFD 174
Query: 181 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240
FA+ RE RKN++GKLASAMIS LGRLGKV+LAK +FETAL+EGYGNTV+AFSALISAYG+
Sbjct: 175 FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGK 234
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
SGY EAI VF SMK LKPNLVTYNAVIDACGKGGV+FK VVEIF++MLRNGVQPDRI
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360
T+NSLLAVCSRGGLWEAARNLFNEM+ RGIDQD+FTYNTLLDA+CKG QMDLA+EIM EM
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354
Query: 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
P K I PNVVTYSTM DGYAKAGRL+DALN+++EMKFLGIGLDRVSYNT+LSIYAKLGRF
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480
E+AL VCKEM SSG++KD VTYNALL GYGKQGK++EV R+F++MK D V PNLLTYSTL
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474
Query: 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
IDVYSKG LY+EAM++FREFKQAGLKADVVLYS LI+ALCKNGLV+SAV LLDEMTKEGI
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534
Query: 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600
RPNVVTYNSIIDAFGRS T E VD V +Q ES + + D+ ++ D
Sbjct: 535 RPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEIN---WDDGH 591
Query: 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660
+ K + QLV+EK G KKE ++EI IL VF+KMH+L+IKPNVVTFSAILNACSRC S
Sbjct: 592 VFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKS 651
Query: 661 FEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720
EDASMLLEELRLFDNQVYGVAHGLLMG+ +N+W+QA LFDEVK MDSSTASAFYNALT
Sbjct: 652 IEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQYLFDEVKQMDSSTASAFYNALT 711
Query: 721 DMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVF 780
DMLWHFGQKRGAQLVVLEGKRR+VWE +WS+SCLDLHLMSSGAARAMVHAWLL IHS+VF
Sbjct: 712 DMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCLDLHLMSSGAARAMVHAWLLGIHSVVF 771
Query: 781 EGHELPKLL 789
EGH+LPKLL
Sbjct: 772 EGHQLPKLL 780
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/789 (74%), Positives = 661/789 (83%), Gaps = 9/789 (1%)
Query: 1 MASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPR 60
MASTPPHCSITA KPYQ HQYP N+LKN HRQ+ + P T+HK L KP S
Sbjct: 1 MASTPPHCSITAAKPYQTHQYPQNNLKN--HRQNARQNG-PWTTTHKFPLVKPLPSTPGH 57
Query: 61 NAPKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR 120
+A K +T + +PN F SL LP+SKSELA +FSGRRSTRFVSK HFGRPK +M+TR
Sbjct: 58 SATKSTSTPLSQSPN---FPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSSMTTR 114
Query: 121 HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFA 180
HS +AEE LH V F +DD SL +IL FE KLCG++DYTFLLRELGNRGE KAI+CF
Sbjct: 115 HSAIAEEVLHQVLQFGKDDASLDNILLNFESKLCGSEDYTFLLRELGNRGECWKAIRCFD 174
Query: 181 FAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240
FA+ RE RKN++GKLASAMIS LGRLGKV+LAK +FETAL+EGYGNTV+AFSALISAYG+
Sbjct: 175 FALVREGRKNERGKLASAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGK 234
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
SGY EAI VF SMK LKPNLVTYNAVIDACGKGGV+FK VVEIF++MLRNGVQPDRI
Sbjct: 235 SGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRI 294
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360
T+NSLLAVCSRGGLWEAARNLFNEM+ RGIDQD+FTYNTLLDA+CKG QMDLA+EIM EM
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEM 354
Query: 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
P K I PNVVTYSTM DGYAKAGRL+DALN+++EMKFLGIGLDRVSYNT+LSIYAKLGRF
Sbjct: 355 PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRF 414
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480
E+AL VCKEM SSG++KD VTYNALL GYGKQGK++EV R+F++MK D V PNLLTYSTL
Sbjct: 415 EDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLTYSTL 474
Query: 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
IDVYSKG LY+EAM++FREFKQAGLKADVVLYS LI+ALCKNGLV+SAV LLDEMTKEGI
Sbjct: 475 IDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEGI 534
Query: 541 RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQ 600
RPNVVTYNSIIDAFGRS T E VD V +Q ES + D+ ++ D
Sbjct: 535 RPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPTFMLIEGVDESEIN---WDDGH 591
Query: 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660
+ K + QLV+EK G KKE ++EI IL VF+KMH+L+IKPNVVTFSAILNACSRC S
Sbjct: 592 VFKFYQQLVSEKEGPAKKERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKS 651
Query: 661 FEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALT 720
EDASMLLEELRLFDNQVYGVAHGLLMG+ +N+W+QA LFDEVK MDSSTASAFYNALT
Sbjct: 652 IEDASMLLEELRLFDNQVYGVAHGLLMGFSENVWIQAQYLFDEVKQMDSSTASAFYNALT 711
Query: 721 DMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVF 780
DMLWHFGQKRGAQLVVLEGKRR+VWE +WS+SCLDLHLMSSGAARAMVHAWLL IHS+VF
Sbjct: 712 DMLWHFGQKRGAQLVVLEGKRRKVWETLWSDSCLDLHLMSSGAARAMVHAWLLGIHSVVF 771
Query: 781 EGHELPKLL 789
EGH+LPKLL
Sbjct: 772 EGHQLPKLL 780
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/680 (78%), Positives = 599/680 (88%), Gaps = 10/680 (1%)
Query: 117 MSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAI 176
M TRH+ VA+EAL +V + +D+ +L ++L FE +L G+DDY FLLRELGNRG+ KAI
Sbjct: 1 MGTRHTSVAQEALQNVIEYGKDERALENVLLNFESRLSGSDDYVFLLRELGNRGDCKKAI 60
Query: 177 QCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236
CF FAVKRE +KN+QGKLASAMIS LGRLGKV++AK +F+ AL EGYGNTVYAFSA+IS
Sbjct: 61 CCFEFAVKRERKKNEQGKLASAMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIIS 120
Query: 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ 296
AYGRSGYC EAI +F SMK Y LKPNLVTYNAVIDACGKGGV+FK V+EIFD+MLRNG+Q
Sbjct: 121 AYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQ 180
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356
PDRITFNSLLAVCS+GGLWEAAR+L EMV+RGIDQDIFTYNTLLDA+CKG Q+D+AFEI
Sbjct: 181 PDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEI 240
Query: 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
M+EMPAKNI PNVVTYSTMIDGYAKAGRLDDA N+F+EMKFLGI LDRVSYNT+LSIYAK
Sbjct: 241 MSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAK 300
Query: 417 LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476
LGRFEEA+ VC+EME+SGIRKD VTYNALLGGYGKQ KYD VR++FE+MKA VSPNLLT
Sbjct: 301 LGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLT 360
Query: 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536
YSTLIDVYSKGGLY+EAM +FREFK+AGLKADVVLYSALIDALCKNGLVESAVSLLDEMT
Sbjct: 361 YSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 420
Query: 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE--- 593
KEGIRPNVVTYNSIIDAFGR ATTE VDD Q +D++ S + +
Sbjct: 421 KEGIRPNVVTYNSIIDAFGRPATTESVVDD-----AGQTSELQIDSLSSSAVEKATKSLV 475
Query: 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILN 653
A R DN+IIK+FGQL AEKAGQ K N QE++CILGVF KMH+L+IKPNVVTFSAILN
Sbjct: 476 ADREDNRIIKIFGQLAAEKAGQAK--NSGGQEMMCILGVFHKMHELEIKPNVVTFSAILN 533
Query: 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTAS 713
ACSRCNSFE+ASMLLEELRLFDNQVYGVAHGLLMGYR+N+W QA SLFDEVKLMDSSTAS
Sbjct: 534 ACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENVWEQAQSLFDEVKLMDSSTAS 593
Query: 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 773
AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL
Sbjct: 594 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 653
Query: 774 NIHSIVFEGHELPKLLRYMI 793
N+ +IVFEGHE+PKLL ++
Sbjct: 654 NVRAIVFEGHEVPKLLSKVV 673
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/770 (68%), Positives = 617/770 (80%), Gaps = 34/770 (4%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP---NPKPFHSL 82
NNH + +P+ RP+ +S SPR + P ++ TVAP + P +
Sbjct: 76 NNHRQTRQNPNYNHRPY-----------GVSSSPRGSAPPPSSVATVAPAQLSQTP--NF 122
Query: 83 SPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSL 142
SPL + KS+L+ DFSGRRSTRFVSKMHFGRPK M+TRHS AE+AL + F+ DD
Sbjct: 123 SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRPKTTMATRHSSAAEDALQNAIDFSGDDEMF 182
Query: 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI 202
++ FE KLCG+DD T+++RELGNRGE KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 183 HSLMLSFESKLCGSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMIST 242
Query: 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262
LGR GKV +AK IFETA + GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+PN
Sbjct: 243 LGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPN 302
Query: 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 322
LVTYNAVIDACGKGG++FK V + FD+M RN VQPDRITFNSLLAVCSRGGLWEAARNLF
Sbjct: 303 LVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLF 362
Query: 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382
+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MPAK I PNVV+YST+IDG+AKA
Sbjct: 363 DEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKA 422
Query: 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442
GR D+ALN+F EM++L I LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VTY
Sbjct: 423 GRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTY 482
Query: 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502
NALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM++FREFK
Sbjct: 483 NALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKS 542
Query: 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT E
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMER 602
Query: 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRC 622
+ D +L S + + G N++I++FGQL +E G + C
Sbjct: 603 SAD--------YSNGGSLPFSSSALSELTETEG---NRVIQLFGQLTSE--GNNRMTKDC 649
Query: 623 R---QEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVY 679
+ QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VY
Sbjct: 650 KEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVY 709
Query: 680 GVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739
GV HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG
Sbjct: 710 GVVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEG 769
Query: 740 KRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLL 789
+ RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+L
Sbjct: 770 RSRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVL 819
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana] gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; Flags: Precursor gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana] gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1065 bits (2754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/769 (68%), Positives = 611/769 (79%), Gaps = 32/769 (4%)
Query: 28 NNHHRQSHHPS--SRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAP----NPKPFHS 81
NNH + +P+ RP+ S SPR + P ++ TVAP P F
Sbjct: 76 NNHRQTRQNPNYNHRPYGASS-----------SPRGSAPPPSSVATVAPAQLSQPPNF-- 122
Query: 82 LSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVS 141
SPL + KS+L+ DFSGRRSTRFVSKMHFGR K M+TRHS AE+AL + F+ DD
Sbjct: 123 -SPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEM 181
Query: 142 LGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201
++ FE KLCG+DD T+++RELGNR E KA+ + FAVKRE RKN+QGKLASAMIS
Sbjct: 182 FHSLMLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMIS 241
Query: 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261
LGR GKV +AK IFETA GYGNTVYAFSALISAYGRSG +EAISVFNSMK Y L+P
Sbjct: 242 TLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRP 301
Query: 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
NLVTYNAVIDACGKGG++FK V + FD+M RNGVQPDRITFNSLLAVCSRGGLWEAARNL
Sbjct: 302 NLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNL 361
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
F+EM +R I+QD+F+YNTLLDAICKG QMDLAFEI+A+MP K I PNVV+YST+IDG+AK
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVT 441
AGR D+ALN+F EM++LGI LDRVSYNT+LSIY K+GR EEAL + +EM S GI+KD VT
Sbjct: 422 AGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVT 481
Query: 442 YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501
YNALLGGYGKQGKYDEV+++F +MK + V PNLLTYSTLID YSKGGLYKEAM+IFREFK
Sbjct: 482 YNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK 541
Query: 502 QAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
AGL+ADVVLYSALIDALCKNGLV SAVSL+DEMTKEGI PNVVTYNSIIDAFGRSAT +
Sbjct: 542 SAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMD 601
Query: 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE-N 620
+ D S+ L A+ + N++I++FGQL E + K+
Sbjct: 602 RSA-DYSNGGSLPFSSSALSALTETE----------GNRVIQLFGQLTTESNNRTTKDCE 650
Query: 621 RCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYG 680
QE+ CIL VF+KMH+L+IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN+VYG
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYG 710
Query: 681 VAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740
V HGLLMG R+N+W+QA SLFD+V MD STASAFYNALTDMLWHFGQKRGA+LV LEG+
Sbjct: 711 VVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGR 770
Query: 741 RRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLL 789
RQVWENVWS+SCLDLHLMSSGAARAMVHAWLLNI SIV+EGHELPK+L
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRSIVYEGHELPKVL 819
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/788 (53%), Positives = 563/788 (71%), Gaps = 26/788 (3%)
Query: 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNA 62
+ PP+ S + P Q Q N+H R H+ +S+ PLS + ++
Sbjct: 7 TPPPNYSSLPSAPRQRRQ-------NHHKRHRHYSNSK-----------SAPLSAAAGSS 48
Query: 63 PKPAATSTTVAPNPKPFHSLSPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTR-H 121
A + SL L +S LAP+FSGRRSTRF +KMH G P++ + H
Sbjct: 49 NAAATGRGNGSGRASTLGSL--LEGRQSRLAPEFSGRRSTRFAAKMHSGMPRVTPNKHAH 106
Query: 122 SVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAF 181
S A+EAL ++ + ++ ++L +E +L +DY ++L+E GN G + A +CF F
Sbjct: 107 SAAADEALSYLFNAGNNIAAIDNVLIAYESELWEVEDYIYMLKEFGNTGHFLLATKCFDF 166
Query: 182 AVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241
+ ++ + +GKL S MI LGRLG+++ A +FE+A EG+GNTVY+FSA+ISAYGR+
Sbjct: 167 IIWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRN 226
Query: 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT 301
G+ +A+ +F SM+ + + PNL++YN++IDA KG VDF VV+ FD+ML G+ PDR+T
Sbjct: 227 GHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDFDVVVKFFDEMLAEGIVPDRLT 286
Query: 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+NSLL+VC+ G+WE A+ L +EM +GI +D FTYNT LD +CKG Q+DLA ++ EM
Sbjct: 287 YNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMS 346
Query: 362 AKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFE 421
++ + P VVTYSTMIDG AKA L+DALN++ EMK I +DRVSYNT++ IYAKLGRF+
Sbjct: 347 SRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFD 406
Query: 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481
EA+ CKEMES G+++D VTYNALL GYG+ G YDEVRR+FE+MKA + PN LTYST+I
Sbjct: 407 EAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMI 466
Query: 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIR 541
DVY+KGG+++EAM ++++FK+A L+ DVV Y+++ID+LCKNGLVES++ LL M ++GI+
Sbjct: 467 DVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIK 526
Query: 542 PNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601
PNVVT+NSIIDA +S T E V + + + + L +M D + G D++I
Sbjct: 527 PNVVTFNSIIDASRQSPTLEYGVHGSSQAV--EYPTEQLSSMLI-DGAFQNKTG--DDRI 581
Query: 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSF 661
+K+F QL AEKAG +K+ + RQ+ CIL +FQKMH+L IKPNVVTFSAILNACSRCNSF
Sbjct: 582 LKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQKMHELNIKPNVVTFSAILNACSRCNSF 641
Query: 662 EDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721
EDASMLL LRLFDNQVYGV HGLLMGYR+ +W QA +LFDE++ MDSSTASAFYNALTD
Sbjct: 642 EDASMLLGALRLFDNQVYGVTHGLLMGYREQVWFQAQTLFDEMRRMDSSTASAFYNALTD 701
Query: 722 MLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781
MLW FGQ+RGA++VV EG+RR VW+ WS SCLDLHLMS GAA AMVH+WLLN+HS +FE
Sbjct: 702 MLWQFGQRRGAEMVVTEGRRRNVWKGEWSISCLDLHLMSCGAACAMVHSWLLNMHSTLFE 761
Query: 782 GHELPKLL 789
G ELPK++
Sbjct: 762 GSELPKIV 769
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/521 (75%), Positives = 441/521 (84%), Gaps = 32/521 (6%)
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL--WEAAR-----NLFNEMVHR 328
G D+ ++ + +G++P+ +T+N+++ C +GG+ AA NLF+EM++R
Sbjct: 147 GSDDYTFLLRELGNRGDSGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYR 206
Query: 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388
GI+QDIFTYNTLLDA+CKG QMDLAF+IM+EMP K+I PNVVTYST+IDGYAKAGRLD+A
Sbjct: 207 GIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEA 266
Query: 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448
LN+F+EMKF IGLDRVSYNT+LSIYAKLGRFEEAL VCKEMESSGI+KDAVTYNALLGG
Sbjct: 267 LNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGG 326
Query: 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508
YGKQGKY+EV+R+FE+MKA+ + PNLLTYSTLIDVYSKGGLY+EAM++FREFK+AGLKAD
Sbjct: 327 YGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKAD 386
Query: 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568
VVLYSALIDALCKNGLVESAVS LDEMTKEGIRPNVVTYNSIIDAFGRS E D E
Sbjct: 387 VVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVE---DATE 443
Query: 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILC 628
++G DK+ DNQIIK+FGQL AEK KKENR RQEILC
Sbjct: 444 SEVG---------------DKE-------DNQIIKIFGQLAAEKTCHAKKENRGRQEILC 481
Query: 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG 688
IL VF KMH+L IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG
Sbjct: 482 ILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG 541
Query: 689 YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENV 748
Y DN+WVQA SLFDEVK MDSSTASAFYNALTDMLWHFGQ+RGAQLVVLEGKRR VWEN+
Sbjct: 542 YGDNVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENM 601
Query: 749 WSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKLL 789
WS SCLDLHLMSSGAARAMVHAWLLNI SIVFEGHELP+LL
Sbjct: 602 WSNSCLDLHLMSSGAARAMVHAWLLNIRSIVFEGHELPQLL 642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/808 (50%), Positives = 546/808 (67%), Gaps = 30/808 (3%)
Query: 3 STPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPS---SRPHWTSHKVSLTKPPLSPSP 59
+ PP+ S P + HNH + R SHH + R W+S + +P
Sbjct: 6 TPPPNYSSLPAAPRNAENHHHNHKNQQNSRHSHHSTHKRPRDRWSSSSRHYSSSNSAPLA 65
Query: 60 RNAPKPAATSTTVAPNPK-------------PFHSLSPLPSSKSELAPDFSGRRSTRFVS 106
A + + P +S + L +S LAP+FSGR+STRF +
Sbjct: 66 AAAVAEVGANGSGNAAAAAAAAGGRGNGRGRPAYSSTLLEGRQSRLAPEFSGRKSTRFAA 125
Query: 107 KMHFGRPKIAMSTR-HSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRE 165
KMH G P++ + HS A+EAL + + ++ ++ +E KL +DY ++L+E
Sbjct: 126 KMHSGMPRVTPNKHAHSAAADEALSCLFKAGNNIAAIDNVFISYEHKLWEVEDYIYMLKE 185
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
GN A +CF F + ++ + D+GKL SAMI LGRLG+++LA +FE A EGYG
Sbjct: 186 FGNTRSLLHAKKCFDFIMSKQNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYG 245
Query: 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285
+TV++FSA+ISA+GR+G +A+ +F SM + + PN++TYN++IDA KG V F VV+
Sbjct: 246 STVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVK 305
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+D+M+ NG+ PDR+T+NSLL+VC+ G+WE A+ L +EM HR I D+FTYNT LD +C
Sbjct: 306 FYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLC 365
Query: 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405
K Q+DLA + EM +K + PNVVTYS M+DGYAKA L+DALN++ EMK + LDRV
Sbjct: 366 KAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRV 425
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465
SYNT++ IY KLG +EA+ CKEME SGI +D VTYNALL GYGK G YDEVRR+FE+M
Sbjct: 426 SYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEEM 485
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
KA + PN LTYST+ID+Y+KG +++EAM ++REFK A L+ DVV YSA+ID LCKNGL+
Sbjct: 486 KARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGLM 545
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585
ES++ LL M ++GI+PNVVT+NSIIDA +S T E G S +D
Sbjct: 546 ESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE---------YGVNGSSDAIDYPIE 596
Query: 586 QDDKDVQEAG----RTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641
Q V + +++I+K+F QL AEKAG KK RQ+ CIL +FQKMH+L I
Sbjct: 597 QSSPIVIDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNI 656
Query: 642 KPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLF 701
KPNVVTFSAILNACS CNS+EDAS+LL+ LRLFDNQVYGV +GLLMGYR+ +W+ A +LF
Sbjct: 657 KPNVVTFSAILNACSLCNSYEDASLLLDTLRLFDNQVYGVTNGLLMGYREQVWLSAETLF 716
Query: 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSS 761
DE+ MD ST+SAFYNALTDMLWHFGQKRGA++VV+EG+RR VW+ WS SCLDLHLMS
Sbjct: 717 DELMCMDPSTSSAFYNALTDMLWHFGQKRGAEMVVIEGRRRNVWKGEWSISCLDLHLMSC 776
Query: 762 GAARAMVHAWLLNIHSIVFEGHELPKLL 789
GAA AMVH+WLL++HS +F+G +LPK +
Sbjct: 777 GAACAMVHSWLLSLHSSLFQGIQLPKFV 804
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 820 | ||||||
| TAIR|locus:2061310 | 918 | GUN1 "AT2G31400" [Arabidopsis | 0.881 | 0.787 | 0.699 | 1.5e-274 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.825 | 0.785 | 0.262 | 1.9e-76 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.515 | 0.516 | 0.308 | 1.4e-64 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.557 | 0.611 | 0.287 | 8.6e-56 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.624 | 0.622 | 0.274 | 3.3e-52 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.426 | 0.555 | 0.308 | 3.7e-51 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.460 | 0.689 | 0.301 | 3e-50 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.515 | 0.688 | 0.301 | 8.6e-50 | |
| TAIR|locus:2026172 | 485 | NG1 "novel gene 1" [Arabidopsi | 0.431 | 0.729 | 0.304 | 9.3e-50 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.429 | 0.559 | 0.316 | 1.1e-49 |
| TAIR|locus:2061310 GUN1 "AT2G31400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2601 (920.7 bits), Expect = 1.5e-274, Sum P(2) = 1.5e-274
Identities = 515/736 (69%), Positives = 590/736 (80%)
Query: 56 SPSPRNAPKPAATSTTVAP-NXXXXXXXXXXXXXXXXXXXDFSGRRSTRFVSKMHFGRPK 114
S SPR + P ++ TVAP DFSGRRSTRFVSKMHFGR K
Sbjct: 95 SSSPRGSAPPPSSVATVAPAQLSQPPNFSPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQK 154
Query: 115 IAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSK 174
M+TRHS AE+AL + F+ DD ++ FE KLCG+DD T+++RELGNR E K
Sbjct: 155 TTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNECDK 214
Query: 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234
A+ + FAVKRE RKN+QGKLASAMIS LGR GKV +AK IFETA GYGNTVYAFSAL
Sbjct: 215 AVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSAL 274
Query: 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294
ISAYGRSG +EAISVFNSMK Y L+PNLVTYNAVIDACGKGG++FK V + FD+M RNG
Sbjct: 275 ISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNG 334
Query: 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354
VQPDRITFNSLLAVCSRGGLWEAARNLF+EM +R I+QD+F+YNTLLDAICKG QMDLAF
Sbjct: 335 VQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAF 394
Query: 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414
EI+A+MP K I PNVV+YST+IDG+AKAGR D+ALN+F EM++LGI LDRVSYNT+LSIY
Sbjct: 395 EILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIY 454
Query: 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474
K+GR EEAL + +EM S GI+KD VTYNALLGGYGKQGKYDEV+++F +MK + V PNL
Sbjct: 455 TKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNL 514
Query: 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534
LTYSTLID YSKGGLYKEAM+IFREFK AGL+ADVVLYSALIDALCKNGLV SAVSL+DE
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594
MTKEGI PNVVTYNSIIDAFGRSAT + + D S+ L A+ +
Sbjct: 575 MTKEGISPNVVTYNSIIDAFGRSATMDRSAD-YSNGGSLPFSSSALSALTETEG------ 627
Query: 595 GRTDNQIIKVFGQLVAEKAGQGKKE-NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILN 653
N++I++FGQL E + K+ QE+ CIL VF+KMH+L+IKPNVVTFSAILN
Sbjct: 628 ----NRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILN 683
Query: 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTAS 713
ACSRCNSFEDASMLLEELRLFDN+VYGV HGLLMG R+N+W+QA SLFD+V MD STAS
Sbjct: 684 ACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLMGQRENVWLQAQSLFDKVNEMDGSTAS 743
Query: 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLL 773
AFYNALTDMLWHFGQKRGA+LV LEG+ RQVWENVWS+SCLDLHLMSSGAARAMVHAWLL
Sbjct: 744 AFYNALTDMLWHFGQKRGAELVALEGRSRQVWENVWSDSCLDLHLMSSGAARAMVHAWLL 803
Query: 774 NIHSIVFEGHELPKLL 789
NI SIV+EGHELPK+L
Sbjct: 804 NIRSIVYEGHELPKVL 819
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 188/716 (26%), Positives = 382/716 (53%)
Query: 96 FSGRRSTRFVSKMHFGRPKIAMST-RHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLC 154
FSG+ + + G P +++ ++S E ++ +++ S+ L F+ KL
Sbjct: 47 FSGKIKAK-TKDLVLGNPSVSVEKGKYSYDVESLINKLSSLPPRG-SIARCLDIFKNKL- 103
Query: 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214
+D+ + +E RG+W ++++ F + ++ K ++ + + MIS+LGR G +D
Sbjct: 104 SLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNE-HIYTIMISLLGREGLLDKCLE 162
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+F+ ++G +V++++ALI+AYGR+G + ++ + + MK + P+++TYN VI+AC
Sbjct: 163 VFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACA 222
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+GG+D++ ++ +F +M G+QPD +T+N+LL+ C+ GL + A +F M GI D+
Sbjct: 223 RGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDL 282
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TY+ L++ K +++ +++ EM + P++ +Y+ +++ YAK+G + +A+ +F +
Sbjct: 283 TTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQ 342
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M+ G + +Y+ +L+++ + GR+++ + EM+SS DA TYN L+ +G+ G
Sbjct: 343 MQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGY 402
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+ EV +F M + + P++ TY +I KGGL+++A +I + + Y+
Sbjct: 403 FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG 462
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574
+I+A + L E A+ + M + G P++ T++S++ +F R V + E L +
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL----VKESEAILSRL 518
Query: 575 KESA---NLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILG 631
+S N D +Q + ++ G+ + + +K + + EK+ + + R + +L +
Sbjct: 519 VDSGIPRNRDTFNAQIEA-YKQGGKFE-EAVKTYVDM--EKS-RCDPDERTLEAVLSVYS 573
Query: 632 V----------FQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV--- 678
F++M I P+++ + +L + ++D + LLEE+ N+V
Sbjct: 574 FARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM--LSNRVSNI 631
Query: 679 YGVAHGLLMG-YRDNI-WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVV 736
+ V ++ G Y D+ W + D++ FYNAL D LW GQK A V+
Sbjct: 632 HQVIGQMIKGDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVL 691
Query: 737 LEGKRRQVWENVWSESCL----DLHLMSSGAARAMVHAWLLNIHSIVFEGHELPKL 788
E +R ++ ++ ++ L D+H MS G + WL +I+ ++ +G +LP+L
Sbjct: 692 NEATKRGLFPELFRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKG-DLPQL 746
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 131/425 (30%), Positives = 245/425 (57%)
Query: 139 DVSLGDILKKFEFKL-CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLA 196
D L ++ + F+ K + + L+ LG ++ A++ F + +K+++ ++ +
Sbjct: 117 DSVLSELFEPFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVV 176
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+ +IS+LG+ G+V A N+F +G+ VY++++LISA+ SG +EA++VF M+
Sbjct: 177 AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEE 236
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
KP L+TYN +++ GK G + + + + M +G+ PD T+N+L+ C RG L +
Sbjct: 237 DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQ 296
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A +F EM G D TYN LLD K + A +++ EM SP++VTY+++I
Sbjct: 297 EAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
YA+ G LD+A+ + ++M G D +Y T+LS + + G+ E A+ + +EM ++G +
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
+ T+NA + YG +GK+ E+ ++F+++ +SP+++T++TL+ V+ + G+ E +
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV 476
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
F+E K+AG + ++ LI A + G E A+++ M G+ P++ TYN+++ A R
Sbjct: 477 FKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALAR 536
Query: 557 SATTE 561
E
Sbjct: 537 GGMWE 541
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 137/477 (28%), Positives = 256/477 (53%)
Query: 210 DLAKNIFETALNEGYG---NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTY 266
+ A +F++ L E Y +T F ++ +Y R +A+S+ + + + P +++Y
Sbjct: 114 EYASLVFKS-LQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSY 172
Query: 267 NAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEM 325
NAV+DA + + +F +ML + V P+ T+N L+ C G + + A LF++M
Sbjct: 173 NAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNI-DVALTLFDKM 231
Query: 326 VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385
+G ++ TYNTL+D CK ++D F+++ M K + PN+++Y+ +I+G + GR+
Sbjct: 232 ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM 291
Query: 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNAL 445
+ + +EM G LD V+YNT++ Y K G F +AL++ EM G+ +TY +L
Sbjct: 292 KEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSL 351
Query: 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505
+ K G + +QM+ + PN TY+TL+D +S+ G EA ++ RE G
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGF 411
Query: 506 KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565
VV Y+ALI+ C G +E A+++L++M ++G+ P+VV+Y++++ F RS + +
Sbjct: 412 SPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALR 471
Query: 566 DVERDL---GKQKE----SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618
V+R++ G + + S+ + C Q + +EA ++++V G E
Sbjct: 472 -VKREMVEKGIKPDTITYSSLIQGFCEQ--RRTKEACDLYEEMLRV-GLPPDEFTYTALI 527
Query: 619 ENRCRQ-EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
C + ++ L + +M + + P+VVT+S ++N ++ + +A LL L+LF
Sbjct: 528 NAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLL--LKLF 582
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 3.3e-52, P = 3.3e-52
Identities = 144/524 (27%), Positives = 258/524 (49%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKN 214
D L++ L + G W +A+ F + V K D ++ + ILGR + +A
Sbjct: 138 DLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDH-QVIEIFVRILGRESQYSVAAK 196
Query: 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274
+ + + Y V A++ ++ AY R+G ++AI +F MK P LVTYN ++D G
Sbjct: 197 LLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFG 256
Query: 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
K G ++ ++ + D+M G++ D T +++L+ C+R GL A+ F E+ G +
Sbjct: 257 KMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGT 316
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394
TYN LL K A ++ EM + + VTY+ ++ Y +AG +A +
Sbjct: 317 VTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEM 376
Query: 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454
M G+ + ++Y TV+ Y K G+ +EAL + M+ +G + TYNA+L GK+ +
Sbjct: 377 MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSR 436
Query: 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514
+E+ +M MK++ SPN T++T++ + G+ K ++FRE K G + D ++
Sbjct: 437 SNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNT 496
Query: 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA---TTECTVDDVERDL 571
LI A + G A + EMT+ G V TYN++++A R + E + D++
Sbjct: 497 LISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKG 556
Query: 572 GKQKESA-NLDAMCSQDDKDVQEAGRTDNQIIK--VFGQLVAEKAGQGKKENRCRQEILC 628
K E++ +L C + R +N+I + +F + + +CR +
Sbjct: 557 FKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLL-LANFKCRA-LAG 614
Query: 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672
F K KP++V F+++L+ +R N ++ A +LE +R
Sbjct: 615 SERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIR 658
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 3.7e-51, P = 3.7e-51
Identities = 110/357 (30%), Positives = 203/357 (56%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
K A + + + +G + + +++ + G A ++ N M++ L+P ++ YN
Sbjct: 201 KASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYN 260
Query: 268 AVIDACGKGGVDFKHV---VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324
+ID K +KH+ + +F +M G++P+ +T++SL++ G W A L ++
Sbjct: 261 TIIDGLCK----YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSD 316
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
M+ R I+ D+FT++ L+DA K ++ A ++ EM ++I P++VTYS++I+G+ R
Sbjct: 317 MIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444
LD+A MF M D V+YNT++ + K R EE + V +EM G+ + VTYN
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
L+ G + G D + +F++M +D V PN++TY+TL+D K G ++AM +F +++
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561
++ + Y+ +I+ +CK G VE L ++ +G++P+VV YN++I F R + E
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE 553
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 526 (190.2 bits), Expect = 3.0e-50, P = 3.0e-50
Identities = 116/385 (30%), Positives = 207/385 (53%)
Query: 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+V LA +I L GY +L++ + R +A+S+ + M KP++V YN
Sbjct: 135 QVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYN 194
Query: 268 AVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326
A+ID+ C V+ + F ++ R G++P+ +T+ +L+ W A L ++M+
Sbjct: 195 AIIDSLCKTKRVN--DAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 327 HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 386
+ I ++ TY+ LLDA K ++ A E+ EM +I P++VTYS++I+G R+D
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446
+A MF M G D VSYNT+++ + K R E+ + + +EM G+ + VTYN L+
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506
G+ + G D+ + F QM +SP++ TY+ L+ G ++A+ IF + ++ +
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566
D+V Y+ +I +CK G VE A SL ++ +G++P++VTY +++ T+ + +
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGL----CTKGLLHE 488
Query: 567 VERDLGKQKESANLDAMCSQDDKDV 591
VE K K+ + C+ D D+
Sbjct: 489 VEALYTKMKQEGLMKNDCTLSDGDI 513
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 8.6e-50, P = 8.6e-50
Identities = 132/438 (30%), Positives = 229/438 (52%)
Query: 173 SKAIQCFAFAVKREERKNDQGKLAS--AMISILGRLGKVDLAKNIFETALNEGYGNTVYA 230
+KA + A V+R K Q L + A+I+ L + G+ DLA N+ V
Sbjct: 184 NKASEAVAL-VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242
Query: 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDD 289
+S +I + + + +A+++F M ++P++ TY+++I C G + + D
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGR--WSDASRLLSD 300
Query: 290 MLRNGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348
ML + P+ +TFNSL+ A G L EA + LF+EM+ R ID +I TYN+L++ C
Sbjct: 301 MLERKINPNVVTFNSLIDAFAKEGKLIEAEK-LFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN 408
++D A +I M +K+ P+VVTY+T+I+G+ KA ++ D + +F +M G+ + V+Y
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468
T++ + + + A +V K+M S G+ + +TYN LL G K GK ++ +FE ++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479
Query: 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESA 528
+ P++ TY+ + + K G ++ +F G+K DV+ Y+ +I CK GL E A
Sbjct: 480 KMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA 539
Query: 529 VSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL--DAMCSQ 586
+L +M ++G P+ TYN++I A R + + L K+ S DA
Sbjct: 540 YTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE-----LIKEMRSCRFAGDASTYG 594
Query: 587 DDKDVQEAGRTDNQIIKV 604
D+ GR D ++V
Sbjct: 595 LVTDMLHDGRLDKGFLEV 612
|
|
| TAIR|locus:2026172 NG1 "novel gene 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 9.3e-50, Sum P(2) = 9.3e-50
Identities = 109/358 (30%), Positives = 195/358 (54%)
Query: 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258
+I+ L R + +A ++ + GY V S+LI+ + + +AI + + M+
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMG 169
Query: 259 LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318
+P++V YN +ID K G+ VE+FD M R+GV+ D +T+NSL+A G W A
Sbjct: 170 FRPDVVIYNTIIDGSCKIGL-VNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDA 228
Query: 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378
L +MV R I ++ T+ ++D K + A ++ EM + + P+V TY+++I+G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLING 288
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438
GR+D+A M M G D V+YNT+++ + K R +E + +EM G+ D
Sbjct: 289 LCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348
Query: 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFR 498
+TYN ++ GY + G+ D + +F +M + PN+ TYS L+ ++A+ +F
Sbjct: 349 TITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFE 405
Query: 499 EFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
+++ ++ D+ Y+ +I +CK G VE A L ++ +G++P+VV+Y ++I F R
Sbjct: 406 NMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCR 463
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 113/357 (31%), Positives = 201/357 (56%)
Query: 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258
+++ L + G +DLA ++ + V ++ +I A +A+++F M
Sbjct: 226 VVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKG 285
Query: 259 LKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLL-AVCSRGGLWE 316
++PN+VTYN++I C G + + DM+ + P+ +TF++L+ A G L E
Sbjct: 286 IRPNVVTYNSLIRCLCNYGR--WSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVE 343
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
A + L++EM+ R ID DIFTY++L++ C ++D A + M +K+ PNVVTY+T+I
Sbjct: 344 AEK-LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
G+ KA R+++ + +F EM G+ + V+YNT++ + G + A + K+M S G+
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQI 496
D +TY+ LL G K GK ++ +FE ++ + P++ TY+ +I+ K G ++ +
Sbjct: 463 PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDL 522
Query: 497 FREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553
F G+K +V++Y+ +I C+ GL E A +L EM ++G PN TYN++I A
Sbjct: 523 FCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SIC9 | PP178_ARATH | No assigned EC number | 0.6879 | 0.8987 | 0.8028 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 820 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-38 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-28 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-27 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-22 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-17 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-10 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 5e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| PHA03420 | 137 | PHA03420, PHA03420, E4 protein; Provisional | 3e-04 | |
| pfam05956 | 359 | pfam05956, APC_basic, APC basic domain | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-38
Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 9/326 (2%)
Query: 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD- 289
++ LIS +SG VF+ M ++ N+ T+ A+ID C + G V + F
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG----QVAKAFGAY 530
Query: 290 --MLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAIC 345
M V+PDR+ FN+L++ C + G + A ++ EM ID D T L+ A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405
Q+D A E+ + NI Y+ ++ ++ G D AL+++ +MK G+ D V
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465
++ ++ + G ++A + ++ GI+ V+Y++L+G + + ++E +
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
K+ + P + T + LI +G +A+++ E K+ GL + + YS L+ A +
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSII 551
+ + LL + ++GI+PN+V I
Sbjct: 771 DVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 3e-36
Identities = 89/342 (26%), Positives = 169/342 (49%), Gaps = 5/342 (1%)
Query: 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVE 285
T+ F+ L+S S A+ V ++ LK + Y +I C K G VD + E
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFE 493
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+F +M+ GV+ + TF +L+ C+R G A + M + + D +N L+ A
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 346 KGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403
+ +D AF+++AEM A I P+ +T ++ A AG++D A ++ + I
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463
Y ++ ++ G ++ AL + +M+ G++ D V ++AL+ G G D+ + +
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523
+ + ++YS+L+ S +K+A++++ + K L+ V +ALI ALC+
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733
Query: 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565
+ A+ +L EM + G+ PN +TY+ ++ A R + +D
Sbjct: 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-28
Identities = 95/365 (26%), Positives = 169/365 (46%), Gaps = 24/365 (6%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
+++IS LG L + + + G+ V ++LI Y G EA VF+ M+
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
+ V++ A+I K G+ K +E + M ++ V PD IT S+L+ C+ G +
Sbjct: 352 ----KDAVSWTAMISGYEKNGLPDK-ALETYALMEQDNVSPDEITIASVLSACACLGDLD 406
Query: 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376
L +G+ + N L++ K +D A E+ +P K+ V++++++I
Sbjct: 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD----VISWTSII 462
Query: 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES---- 432
G R +AL F +M L + + V+ LS A++G AL+ KE+ +
Sbjct: 463 AGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIG----ALMCGKEIHAHVLR 517
Query: 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492
+GI D NALL Y + G+ + F + D VS N+L + Y G
Sbjct: 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNIL-----LTGYVAHGKGSM 572
Query: 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSII 551
A+++F ++G+ D V + +L+ A ++G+V + M ++ I PN+ Y ++
Sbjct: 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632
Query: 552 DAFGR 556
D GR
Sbjct: 633 DLLGR 637
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-27
Identities = 81/360 (22%), Positives = 167/360 (46%), Gaps = 14/360 (3%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257
A++ L + K ++ + G+ Y + ++ + + G +A +F+ M
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185
Query: 258 NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317
+ NL ++ +I G +++ +F +M +G + TF +L + G A
Sbjct: 186 --ERNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377
+ L ++ G+ D F L+D K ++ A + MP K V +++M+
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT----TVAWNSMLA 298
Query: 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437
GYA G ++AL ++ EM+ G+ +D+ +++ ++ I+++L E A + +G
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358
Query: 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
D V AL+ Y K G+ ++ R +F++M NL++++ LI Y G +A+++F
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMF 414
Query: 498 REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFGR 556
G+ + V + A++ A +GL E + M++ I+P + Y +I+ GR
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 7e-26
Identities = 78/390 (20%), Positives = 148/390 (37%), Gaps = 75/390 (19%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEG---------YGNTVYAFSALISAYGRSGYCQEAI 248
A+IS G+ G VD A ++ E G AL+ A +G A
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG-------ALMKACANAGQVDRAK 599
Query: 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308
V+ + YN+K Y +++C + G D+ + I+DDM + GV+PD + F++L+ V
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKG-DWDFALSIYDDMKKKGVKPDEVFFSALVDV 658
Query: 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368
G +D AFEI+ + + I
Sbjct: 659 AGHAGD-----------------------------------LDKAFEILQDARKQGIKLG 683
Query: 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428
V+YS+++ + A AL ++ ++K + + + N +++ + + +AL V
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI------- 481
EM+ G+ + +TY+ LL ++ D + Q K D + PNL+ +
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803
Query: 482 DVYSKGGL----------------YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ G A+ ++RE AG + + S ++ L
Sbjct: 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDA 863
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555
L++ + ++++D FG
Sbjct: 864 TLRNRLIENLGISADSQKQSNLSTLVDGFG 893
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-25
Identities = 103/449 (22%), Positives = 183/449 (40%), Gaps = 87/449 (19%)
Query: 235 ISAYGR---SGYCQEAISVFNSM-KRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI--FD 288
I AY R G ++ I + M KR L + + + AC K V E F
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA----VKEAFRFA 429
Query: 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348
++RN P TFN L++VC+ + A + + G+ D Y TL+ K
Sbjct: 430 KLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG 486
Query: 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN 408
++D FE+ EM + NV T+ +IDG A+AG++ A + M+ + DRV +N
Sbjct: 487 KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546
Query: 409 TVLSIYAKLGRFEEALLVCKEM--ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466
++S + G + A V EM E+ I D +T AL MK
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL-------------------MK 587
Query: 467 ADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526
A G A ++++ + +K +Y+ +++ + G +
Sbjct: 588 ACA----------------NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631
Query: 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQ 586
A+S+ D+M K+G++P+ V +++++D G + DL K E
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHA-----------GDLDKAFEI--------- 671
Query: 587 DDKDVQEAGRTDNQI-IKVFGQL--VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP 643
+Q+A + ++ + L A KK L +++ + +K++P
Sbjct: 672 ----LQDARKQGIKLGTVSYSSLMGACSNAKNWKKA----------LELYEDIKSIKLRP 717
Query: 644 NVVTFSAILNACSRCNSFEDASMLLEELR 672
V T +A++ A N A +L E++
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMK 746
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-24
Identities = 75/311 (24%), Positives = 142/311 (45%), Gaps = 14/311 (4%)
Query: 246 EAISVFNSMK-RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNS 304
EA+ +F ++ TY+A+++AC + V ++ + +G +PD+ N
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACI-ALKSIRCVKAVYWHVESSGFEPDQYMMNR 163
Query: 305 LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364
+L + + G+ AR LF+EM R ++ ++ T++ + AF + EM
Sbjct: 164 VLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDG 219
Query: 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEAL 424
T+ M+ A G + + G+ D ++ +Y+K G E+A
Sbjct: 220 SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279
Query: 425 LVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484
V M K V +N++L GY G +E ++ +M+ VS + T+S +I ++
Sbjct: 280 CVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335
Query: 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544
S+ L + A Q + G D+V +AL+D K G +E A ++ D M R N+
Sbjct: 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391
Query: 545 VTYNSIIDAFG 555
+++N++I +G
Sbjct: 392 ISWNALIAGYG 402
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 85/361 (23%), Positives = 176/361 (48%), Gaps = 17/361 (4%)
Query: 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253
+L +AM+S+ R G++ A +F + E +++++ L+ Y ++GY EA+ +++
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVF-GKMPE---RDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 254 MKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313
M ++P++ T+ V+ CG G D E+ ++R G + D N+L+ + + G
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCG-GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236
Query: 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373
+AR +F+ M R D ++N ++ + + E+ M ++ P+++T +
Sbjct: 237 DVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292
Query: 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433
++I G M + G +D N+++ +Y LG + EA V ME
Sbjct: 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-- 350
Query: 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493
KDAV++ A++ GY K G D+ + M+ D VSP+ +T ++++ + G
Sbjct: 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408
Query: 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553
+++ ++ GL + VV+ +ALI+ K ++ A+ + + +V+++ SII
Sbjct: 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAG 464
Query: 554 F 554
Sbjct: 465 L 465
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-24
Identities = 101/458 (22%), Positives = 183/458 (39%), Gaps = 68/458 (14%)
Query: 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI------DACGKG 276
G+ V +ALI+ Y + G A VF+ M R + +++NA+I C +G
Sbjct: 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEG 272
Query: 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336
+E+F M V PD +T S+++ C G R + +V G D+
Sbjct: 273 -------LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 337 YNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396
N+L+ A ++ + M K+ V+++ MI GY K G D AL ++ M+
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALME 381
Query: 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456
+ D ++ +VLS A LG + + + + E G+ V NAL+ Y K D
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516
+ +F + ++++++++I EA+ FR+ LK + V A +
Sbjct: 442 KALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAAL 496
Query: 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576
A + G + + + + GI + N+++D + R
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA------------- 543
Query: 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636
+ S +KDV + L+ GK + +F +M
Sbjct: 544 ---WNQFNSH-EKDVVS-----------WNILLTGYVAHGKGS--------MAVELFNRM 580
Query: 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674
+ + P+ VTF ++L ACSR + M+ + L F
Sbjct: 581 VESGVNPDEVTFISLLCACSR------SGMVTQGLEYF 612
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 2e-22
Identities = 102/432 (23%), Positives = 192/432 (44%), Gaps = 61/432 (14%)
Query: 232 SALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML 291
+A++S + R G A VF M + +L ++N ++ K G F + ++ ML
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGY-FDEALCLYHRML 179
Query: 292 RNGVQPDRITFNSLLAVCSRGGL--WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349
GV+PD TF +L C GG+ R + +V G + D+ N L+ K
Sbjct: 180 WAGVRPDVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNT 409
+ A + MP ++ ++++ MI GY + G + L +F M+ L + D ++ +
Sbjct: 238 VVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293
Query: 410 VLSIYAKLGRFEEALLVCKEMESSGIRK----DAVTYNALLGGYGKQGKYDEVRRMFEQM 465
V+S LG +E L +EM ++ D N+L+ Y G + E ++F +M
Sbjct: 294 VISACELLG--DERL--GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ + ++++ +I Y K GL +A++ + +Q + D + ++++ A G +
Sbjct: 350 --ET--KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCS 585
+ V L + ++G+ VV N++I+ + + K + A L+ +
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKC---------------KCIDKA-LEVFHN 449
Query: 586 QDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV 645
+KDV II + NRC + ++ F++M L +KPN
Sbjct: 450 IPEKDVISW----TSIIAGL-----------RLNNRCFEALI----FFRQM-LLTLKPNS 489
Query: 646 VTFSAILNACSR 657
VT A L+AC+R
Sbjct: 490 VTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 6e-19
Identities = 102/409 (24%), Positives = 180/409 (44%), Gaps = 52/409 (12%)
Query: 376 IDGYA---KAGRLDDALNMFSEMKFLG-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431
ID Y + GR+ D +++ +M+ G + +D++ + K +EA K +
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433
Query: 432 SSGIRKDAVTYNALLGGYGKQGKYD---EVRRMFEQ--MKADCVSPNLLTYSTLIDVYSK 486
+ + T+N L+ D V R+ ++ +KADC Y+TLI +K
Sbjct: 434 NPTLS----TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK-----LYTTLISTCAK 484
Query: 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVT 546
G ++F E AG++A+V + ALID + G V A M + ++P+ V
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 547 YNSIIDAFGRSATTECTVD---DVERDLGKQKESANLDAM--------CSQDDKDVQEAG 595
+N++I A G+S VD DV ++ + + D + C+ AG
Sbjct: 545 FNALISACGQSG----AVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN-------AG 593
Query: 596 RTDNQIIKVFGQLVAEKAGQGKKE------NRCRQ--EILCILGVFQKMHKLKIKPNVVT 647
+ D + +V+ Q++ E +G E N C Q + L ++ M K +KP+ V
Sbjct: 594 QVD-RAKEVY-QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNI--WVQALSLFDEVK 705
FSA+++ + A +L++ R ++ V++ LMG N W +AL L++++K
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCL 754
+ + NAL L Q A V+ E KR + N + S L
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 67/243 (27%), Positives = 119/243 (48%), Gaps = 14/243 (5%)
Query: 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256
S MI I RL ++ AK + G+ + A +AL+ Y + G ++A +VF+ M R
Sbjct: 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388
Query: 257 YNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316
NL+++NA+I G G K VE+F+ M+ GV P+ +TF ++L+ C GL E
Sbjct: 389 ----KNLISWNALIAGYGNHGRGTK-AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443
Query: 317 AARNLFNEM--VHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374
+F M HR I Y +++ + + +D A+ ++ P K P V ++
Sbjct: 444 QGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PTVNMWAA 499
Query: 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLVCKEMESS 433
++ L+ L + K G+G +++ +Y +L++Y GR EA V + ++
Sbjct: 500 LLTACRIHKNLE--LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
Query: 434 GIR 436
G+
Sbjct: 558 GLS 560
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 1e-17
Identities = 74/360 (20%), Positives = 144/360 (40%), Gaps = 51/360 (14%)
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360
T+++L+ C + ++ + G + D + N +L K + A + EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG-- 418
P +N+ ++ T+I G AG +A +F EM G D V+ + A G
Sbjct: 185 PERNL----ASWGTIIGGLVDAGNYREAFALFREM--WEDGSDAEPRTFVVMLRASAGLG 238
Query: 419 --RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476
R + L C + +G+ D AL+ Y K G ++ R +F+ M +
Sbjct: 239 SARAGQQLHCC--VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VA 292
Query: 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536
+++++ Y+ G +EA+ ++ E + +G+ D +S +I + L+E A +
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGR 596
+ G ++V +++D + + E D ++V +
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRME-------------------------DARNVFDRMP 387
Query: 597 TDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656
N I + L+A G+ +F++M + PN VTF A+L+AC
Sbjct: 388 RKNLI--SWNALIAGYGNHGRGTKAVE--------MFERMIAEGVAPNHVTFLAVLSACR 437
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 4e-17
Identities = 85/371 (22%), Positives = 154/371 (41%), Gaps = 53/371 (14%)
Query: 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233
KA++ +A ++++ D+ +AS + S LG +D+ + E A +G + V +A
Sbjct: 372 KALETYAL-MEQDNVSPDEITIASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 234 LISAYGRSGYCQEAISVFNSMKRYN------------------------------LKPNL 263
LI Y + +A+ VF+++ + LKPN
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFN 323
VT A + AC + G EI +LR G+ D N+LL + R G A N FN
Sbjct: 490 VTLIAALSACARIGA-LMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548
Query: 324 EMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG 383
H +D+ ++N LL + +A E+ M ++P+ VT+ +++ +++G
Sbjct: 549 --SHE---KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603
Query: 384 RLDDALNMFSEMKF-LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442
+ L F M+ I + Y V+ + + G+ EA +M I D +
Sbjct: 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVW 660
Query: 443 NALLGGYGKQGKYD----EVRRMFEQMKADCVSPNLLTYSTLI-DVYSKGGLYKEAMQIF 497
ALL + + +FE PN + Y L+ ++Y+ G + E ++
Sbjct: 661 GALLNACRIHRHVELGELAAQHIFEL------DPNSVGYYILLCNLYADAGKWDEVARVR 714
Query: 498 REFKQAGLKAD 508
+ ++ GL D
Sbjct: 715 KTMRENGLTVD 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 6e-17
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556
DVV Y+ LID CK G VE A+ L +EM K GI+PNV TY+ +ID +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 3e-16
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381
D+ TYNTL+D CK +++ A ++ EM + I PNV TYS +IDG K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 4e-16
Identities = 64/247 (25%), Positives = 118/247 (47%), Gaps = 19/247 (7%)
Query: 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257
A +S R+G + K I L G G + +AL+ Y R G A + FNS ++
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK- 552
Query: 258 NLKPNLVTYNAVID---ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314
++V++N ++ A GKG + VE+F+ M+ +GV PD +TF SLL CSR G+
Sbjct: 553 ----DVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 315 WEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373
F+ M + I ++ Y ++D + + ++ A+ + +MP I+P+ +
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWG 661
Query: 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-SIYAKLGRFEEALLVCKEMES 432
+++ ++ L + + + V Y +L ++YA G+++E V K M
Sbjct: 662 ALLNACRIHRHVE--LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719
Query: 433 SGIRKDA 439
+G+ D
Sbjct: 720 NGLTVDP 726
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 1e-13
Identities = 22/50 (44%), Positives = 36/50 (72%)
Query: 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416
P+VVTY+T+IDGY K G++++AL +F+EMK GI + +Y+ ++ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-13
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK 346
PD +T+N+L+ + G E A LFNEM RGI +++TY+ L+D +CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 2e-13
Identities = 24/50 (48%), Positives = 32/50 (64%)
Query: 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486
D VTYN L+ GY K+GK +E ++F +MK + PN+ TYS LID K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
V ++ LI Y + G +EA+ +FN MK+ +KPN+ TY+ +ID K
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 3e-12
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521
P+++TY+TLID Y K G +EA+++F E K+ G+K +V YS LID LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 60.8 bits (149), Expect = 4e-12
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396
K + P+VVTY+T+IDG +AGR+D+A+ + EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 7e-12
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 261 PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311
P++VTYN +ID K G + +++F++M + G++P+ T++ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKG-KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 504 GLKADVVLYSALIDALCKNGLVESAVSLLDEM 535
GLK DVV Y+ LID LC+ G V+ AV LLDEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400
VTY+++I GY KAG+L++AL +F EMK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403
VTY+T+IDG KAGR+++AL +F EMK GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544
V Y+ LID LCK G VE A+ L EM + GI P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.9 bits (125), Expect = 3e-07
Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 4/224 (1%)
Query: 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTY 372
L EA L + L A+ K +++ A E++ + + PN
Sbjct: 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98
Query: 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME- 431
+ G+ ++AL + + L D L +LG +EEAL + ++
Sbjct: 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158
Query: 432 -SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490
+ + A AL G+Y+E + E+ + L +Y K G Y
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534
+EA++ + + + LY+ L L + G E A+ L++
Sbjct: 219 EEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473
VTYN L+ G K G+ +E +F++MK + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGI 540
V Y++LI CK G +E A+ L EM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298
VTYN +ID K G + +E+F +M G++PD
Sbjct: 1 VTYNTLIDGLCKAG-RVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435
V+YN+++S Y K G+ EEAL + KEM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 9e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466
G++ D VTYN L+ G + G+ DE + ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439
V+YNT++ K GR EEAL + KEM+ GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470
VTYN+L+ GY K GK +E +F++MK V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509
TY+TLID K G +EA+++F+E K+ G++ DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 5e-05
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542
+ Y+AL+ AL K G + A+++L+EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (96), Expect = 6e-05
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 328 RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+G+ D+ TYNTL+D +C+ ++D A E++ EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505
TY++LI Y K G +EA+++F+E K+ G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN 262
++ LI ++G +EA+ +F MK ++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 9e-05
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 264 VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV 295
VTYN++I K G + +E+F +M GV
Sbjct: 1 VTYNSLISGYCKAG-KLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGI 330
+T+NSL++ + G E A LF EM +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV 369
TYNTL+D +CK +++ A E+ EM + I P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNL 259
+++LIS Y ++G +EA+ +F MK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI 334
+T+N+L+ + G E A LF EM RGI+ D+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436
+YN +L AK G + AL V +EM++SG++
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|177648 PHA03420, PHA03420, E4 protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 2 ASTPPHCSITATKPYQNHQYPHNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRN 61
P H P++ HQ +HL++ H H H S + + ++ P
Sbjct: 49 LDRPHH------HPHR-HQQDDHHLQDRQHLPQQHLQRPHHPLSPQC---QQNVTGKPVL 98
Query: 62 APKPAATSTTVAP 74
+P V P
Sbjct: 99 QQEPKVGQEVVIP 111
|
Length = 137 |
| >gnl|CDD|218825 pfam05956, APC_basic, APC basic domain | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 6e-04
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 4 TPPHCSITATKPYQNHQYPHNHLKNNHHRQSH--------HP--SSRPHWTSHKV----- 48
P + P ++ P + HR + P S+ P K
Sbjct: 26 KGPPLKTQPSDPPKSPS-PGQQRSRSLHRPAKPSELAELSPPPRSATPPARLAKTPSSSS 84
Query: 49 SLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSLSPLPSSKSE----LAPDFSGRRSTR 103
S T P P PR P+P ++ + P P +SLS +P + S LA S ++ +
Sbjct: 85 SQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPARALLASSGSQHKTQK 143
|
This region of the APC family of proteins is known as the basic domain. It contains a high proportion of positively charged amino acids and interacts with microtubules. Length = 359 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367
+ TYN LL A+ K DLA ++ EM A + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 8e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 369 VVTYSTMIDGYAKAGRLDDALNMFSEMK 396
+ TY+ ++ AKAG D AL + EMK
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMK 28
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 9e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 632 VFQKMHKLKIKPNVVTFSAILNACSR 657
+F +M K IKPNV T+S +++ +
Sbjct: 25 LFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA 507
TY+ L+ +K G A+ + E K +GLK
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 539 GIRPNVVTYNSIIDAFGRS 557
G++P+VVTYN++ID R+
Sbjct: 2 GLKPDVVTYNTLIDGLCRA 20
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 293 NGVQPDRITFNSLL-AVCSRGGLWEAARNLFNEMV 326
G++PD +T+N+L+ +C R G + A L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLC-RAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGI 330
T+N+LL ++ G + A + EM G+
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.004
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 258 NLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDM 290
LKP++VTYN +ID C G VD VE+ D+M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDE--AVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.57 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.56 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.5 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.39 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.31 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.16 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.06 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.93 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.73 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.72 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.54 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.43 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.3 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.3 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.19 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.18 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.14 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.91 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.85 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.83 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.69 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.63 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.63 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.61 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.56 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.56 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.55 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.54 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.53 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.52 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.51 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.5 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.44 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.4 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.37 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.34 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.32 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.29 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.23 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.22 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.22 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.21 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.19 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.09 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.02 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.99 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.98 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.98 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.95 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.84 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.82 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.72 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.67 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.56 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.55 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.47 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.39 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.31 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.22 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.14 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.09 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.96 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.96 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.83 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.73 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.72 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.68 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.68 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.65 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.56 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.56 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.41 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.24 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.15 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.01 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.01 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.86 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.83 | |
| KOG1923 | 830 | consensus Rac1 GTPase effector FRL [Signal transdu | 94.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.67 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.64 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.3 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.27 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.25 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.23 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.19 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.17 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.04 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.92 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.8 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.76 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.58 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 93.51 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.99 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.57 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.41 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.39 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.36 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.31 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.29 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.22 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.18 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.02 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.26 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 91.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.02 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.82 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.8 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.48 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.2 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.19 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.18 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.33 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.81 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.08 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 87.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.95 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.89 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.37 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.28 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 87.04 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.23 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.12 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.97 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.51 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.41 | |
| PRK09687 | 280 | putative lyase; Provisional | 85.3 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.3 | |
| KOG2391 | 365 | consensus Vacuolar sorting protein/ubiquitin recep | 83.96 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.73 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.52 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.52 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 83.48 | |
| KOG0917 | 338 | consensus Uncharacterized conserved protein [Funct | 83.24 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 83.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.08 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.56 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.78 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=678.38 Aligned_cols=648 Identities=18% Similarity=0.231 Sum_probs=517.8
Q ss_pred HHHHHHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc
Q 003433 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (820)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (820)
.++..+.. .+....+..+++.+.. .+...|+.+|.+|++.|++++|+++|++|...+. .++..+|+.++.+|++.
T Consensus 126 ~li~~~~~-~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~--~Pd~~t~~~ll~~~~~~ 200 (857)
T PLN03077 126 AMLSMFVR-FGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV--RPDVYTFPCVLRTCGGI 200 (857)
T ss_pred HHHHHHHh-CCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChhHHHHHHHHhCCc
Confidence 33443333 3344455667777753 3456899999999999999999999999998764 44567999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH
Q 003433 207 GKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI 286 (820)
Q Consensus 207 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~ 286 (820)
+++..+.+++..+.+.|..+|+.++++||.+|++.|++++|.++|++|.+ ||.++||++|.+|++.| ++++|+++
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g-~~~eAl~l 275 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENG-ECLEGLEL 275 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCC-CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975 79999999999999999 99999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 003433 287 FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 287 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|+.+|++.|++++|.++|++|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
||.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+|++|+
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.+ ++.||..||+.++.+|++.|.++
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~ 506 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALM 506 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHH
Confidence 999999999999999999964 5889999999999999999999999999986 58899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (820)
.+.+++..|.+.|+.+|..++++|+++|++.|++++|.+++++. . ++ ...|+.++..|+
T Consensus 507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--~d------------------~~s~n~lI~~~~ 565 (857)
T PLN03077 507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E--KD------------------VVSWNILLTGYV 565 (857)
T ss_pred HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C--CC------------------hhhHHHHHHHHH
Confidence 99999999999999999999999999999999999988876653 1 11 145677777666
Q ss_pred HHHHH-----------HhcCCcc---------chhhhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 003433 607 QLVAE-----------KAGQGKK---------ENRCRQEILCILGVFQKMH-KLKIKPNVVTFSAILNACSRCNSFEDAS 665 (820)
Q Consensus 607 ~~~~~-----------~~~~~~~---------~~~~~~~~~~Al~~~~~m~-~~~~~Pd~~~~~~ll~a~~~~g~~~eA~ 665 (820)
+.+.. ..|.... .....|..++|+++|++|. ..|+.||..+|++|+++|++.|+++||.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 43200 0000000 0011134444555555554 3445555555555555555555555555
Q ss_pred HHHHHHhhcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 666 MLLEELRLFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+++++|. ..|+ ..++..++.+++ .++.+.|+...+++++++|++ ..+|..|+++|.+.|+|++|.++++.|+++|+
T Consensus 646 ~~~~~m~-~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~ 722 (857)
T PLN03077 646 NFINKMP-ITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGL 722 (857)
T ss_pred HHHHHCC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCC
Confidence 5555542 1111 222333344443 566777888888888999965 77899999999999999999999999999999
Q ss_pred hhh---hhhccchhhhhcchhHHH----HHHHHHHHHHH-HHhhcCCCCC--------------------hhHHHHHHHh
Q 003433 745 WEN---VWSESCLDLHLMSSGAAR----AMVHAWLLNIH-SIVFEGHELP--------------------KLLRYMIICL 796 (820)
Q Consensus 745 ~~~---~~~~~~~d~~~~~~g~~~----~~~~~w~~~~~-~~~~~g~~~~--------------------~~~~~~~~~~ 796 (820)
++. +|++..+.+|.|..|+.. ..+..-+.++. ++.+.|-... ..+.|..|-.
T Consensus 723 ~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~ 802 (857)
T PLN03077 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLI 802 (857)
T ss_pred CCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhh
Confidence 764 688888889988877642 22333233433 3333443211 1122222222
Q ss_pred hhhhhHHHHHHhhhcccccccc
Q 003433 797 SVADECLLLLKFHLNRICLSCS 818 (820)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~ 818 (820)
.. ..+.-++..+++|+|+||-
T Consensus 803 ~~-~~~~~i~i~knlr~c~dch 823 (857)
T PLN03077 803 NT-VPGMPIWVTKNLYMCENCH 823 (857)
T ss_pred cC-CCCCeEEEeCCCEeCccHH
Confidence 21 3556678889999999994
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-71 Score=643.01 Aligned_cols=577 Identities=21% Similarity=0.297 Sum_probs=512.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
...|..++..|++.|++++|+++|++|.+.+... .+...+..++..|.+.|.+++|..+|+.|.. ||..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~-~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD-MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4468889999999999999999999999887533 3456778899999999999999999999964 7999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.| ++++|.++|++|.+.|+.||..||+.||.+|++.|++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.++|++||.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (820)
Q Consensus 394 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 473 (820)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchh---------hhh
Q 003433 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENR---------CRQ 624 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 624 (820)
|++.|++++|.+++.+.++...... ...++.++.++.+.- .+.+....... ...
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd----------------~~tynsLIglc~~~y-~ka~~l~~~v~~f~~g~~~~~n~ 826 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPN----------------LVMCRCITGLCLRRF-EKACALGEPVVSFDSGRPQIENK 826 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHHH-HHHhhhhhhhhhhhccccccccc
Confidence 9999999999999988877654331 134566665533211 11122111110 112
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEV 704 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 704 (820)
...+|+.+|++|++.|+.||.+||+.++.++++.+.++.+..+++.|...
T Consensus 827 w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~------------------------------ 876 (1060)
T PLN03218 827 WTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS------------------------------ 876 (1060)
T ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC------------------------------
Confidence 35689999999999999999999999997777777777776666655311
Q ss_pred hhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhh---ccchhhhhcchhHHHHHHHHHHHHHHHHhhc
Q 003433 705 KLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWS---ESCLDLHLMSSGAARAMVHAWLLNIHSIVFE 781 (820)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~d~~~~~~g~~~~~~~~w~~~~~~~~~~ 781 (820)
....+..+|++|++.+.+. .++|..++++|...|+.+.... ...+|+|.++.|+|+.+++.|++.++.++..
T Consensus 877 ---~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~~aa~~~l~~wl~~~~~~~~~ 951 (1060)
T PLN03218 877 ---ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPVFAAEVYLLTILKGLKHRLAA 951 (1060)
T ss_pred ---CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcchhHHHHHHHHHHHHHHHHhc
Confidence 1112245699999987332 3689999999999998765311 2469999999999999999999999999999
Q ss_pred CCCCChhHH
Q 003433 782 GHELPKLLR 790 (820)
Q Consensus 782 g~~~~~~~~ 790 (820)
|.++|.+.+
T Consensus 952 g~~lp~~~~ 960 (1060)
T PLN03218 952 GAKLPNVTI 960 (1060)
T ss_pred cCcCCccee
Confidence 999999777
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=616.51 Aligned_cols=544 Identities=22% Similarity=0.349 Sum_probs=481.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..|+.+|..|.+.|++++|+++|++|...+.. ..+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.|+.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~-~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPF-TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 46888999999999999999999999876532 34567999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
+|++.|++++|.++|++|.+ ||.++||.+|.+|++.| ++++|+++|++|.+.|+.||..||+.++.+|++.|..+
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g-~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAG-NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCc-CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999975 89999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
.+.+++..+.+.|+.+|..+||+|+++|++.|++++|.++|++|.. +|.++||+||.+|++.|++++|+++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 499999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.+|..+|++|+++|++.|++++|.++|++|. .+|..+
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 479999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHh
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-EGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 555 (820)
||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|+.++++|+
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 599999999999999999
Q ss_pred hcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHH
Q 003433 556 RSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQK 635 (820)
Q Consensus 556 ~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~ 635 (820)
+.|++++|. ++|++
T Consensus 474 r~G~~~eA~------------------------------------------------------------------~~~~~ 487 (697)
T PLN03081 474 REGLLDEAY------------------------------------------------------------------AMIRR 487 (697)
T ss_pred hcCCHHHHH------------------------------------------------------------------HHHHH
Confidence 999877654 35554
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhH
Q 003433 636 MHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAF 715 (820)
Q Consensus 636 m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (820)
| ++.||..+|++|+++|+..|+++.|..+++++.+ ++|++ ...
T Consensus 488 ~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---------------------------------~~p~~-~~~ 530 (697)
T PLN03081 488 A---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---------------------------------MGPEK-LNN 530 (697)
T ss_pred C---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---------------------------------CCCCC-Ccc
Confidence 4 5889999999999999999999988877766653 34533 456
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhhhhhhh---hhhccchhhhhcchhHHH----HHHHHHHHHH-HHHhhcCCCCC-
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN---VWSESCLDLHLMSSGAAR----AMVHAWLLNI-HSIVFEGHELP- 786 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~g~~~----~~~~~w~~~~-~~~~~~g~~~~- 786 (820)
|+.|+++|.+.|+|++|.+++++|+++|+.+. +|++..+.+|.|..|+.. ..+..-+.++ .++.+.|....
T Consensus 531 y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 531 YVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999998643 588877778877766432 1121222232 23333442111
Q ss_pred --------------------hhHHHHHHHhhhhhhHHHHHHhhhcccccccc
Q 003433 787 --------------------KLLRYMIICLSVADECLLLLKFHLNRICLSCS 818 (820)
Q Consensus 787 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (820)
..+.|..|-... .++.-++..+++|+|+||-
T Consensus 611 ~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~-~~~~~i~i~knlr~c~dch 661 (697)
T PLN03081 611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINT-SEWTPLQITQSHRICKDCH 661 (697)
T ss_pred chhhccccHHHHHHHHHhccHHHHHHhhCccC-CCCCeEEEecCCEECCCch
Confidence 122233333322 4566788899999999995
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=615.70 Aligned_cols=591 Identities=19% Similarity=0.215 Sum_probs=446.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..++.++..|++.|+++.|+++|+.|.. .+..+|+.++.+|++.|++++|.++|++|...|+.||.++|+.++.
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~~------~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~ 195 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMPE------RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCC------CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 3566777777788888888888777743 2345777788888888888888888888877777778888888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
++++.++++.+.+++..|.+.|+.||..+||.||.+|++.| ++++|.++|++|. .+|..+||++|.+|++.|+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMP----RRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHH
Confidence 87777777778888888877777778888888888888888 7888888888775 357778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
+|.++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888775
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
.+|.++|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.++..+
T Consensus 351 ----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 351 ----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred ----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 4677788888888888888888888888888778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
|+.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 88888888888888888888887754 5777888888888888888888888888875 478888888888888888
Q ss_pred cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHH
Q 003433 557 SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKM 636 (820)
Q Consensus 557 ~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m 636 (820)
.|.++++.+++..+++..... ....+++++++|++++ ++++|.++|++|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~----------------~~~~~naLi~~y~k~G---------------~~~~A~~~f~~~ 550 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGF----------------DGFLPNALLDLYVRCG---------------RMNYAWNQFNSH 550 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCc----------------cceechHHHHHHHHcC---------------CHHHHHHHHHhc
Confidence 888888887776666543322 1256788999999764 778899999987
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH-HHHHHhcc-ccchHHHHHHHHHHHh-hcCCCcch
Q 003433 637 HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV-AHGLLMGY-RDNIWVQALSLFDEVK-LMDSSTAS 713 (820)
Q Consensus 637 ~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~A~~~~~~~~-~~~~~~~~ 713 (820)
.||.++|++|+.+|++.|+.++|.++|++|.+.+.....+ ...++.++ +.|.+++|.++|++|. +.+..++.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 6899999999999999999999999999998753322222 23345555 6899999999999998 44444557
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhcc--chhhhhcchhHHHHHHHHHHHHHHHHhhcCCCCC-hhHH
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSES--CLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELP-KLLR 790 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~g~~~~~~~~w~~~~~~~~~~g~~~~-~~~~ 790 (820)
.+|++++++|++.|++++|.+++++|.- ......|... ...+|.. ...++.+.+ .+.+ ++...... .+++
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~-~pd~~~~~aLl~ac~~~~~-~e~~e~~a~----~l~~-l~p~~~~~y~ll~ 698 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPI-TPDPAVWGALLNACRIHRH-VELGELAAQ----HIFE-LDPNSVGYYILLC 698 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCC-hHHHHHHHH----HHHh-hCCCCcchHHHHH
Confidence 8899999999999999999999998731 1111233321 1223322 111111111 1111 22222112 2778
Q ss_pred HHHHHhhhhhhHHHHHHhhh
Q 003433 791 YMIICLSVADECLLLLKFHL 810 (820)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~ 810 (820)
.+++..|.|+|+...++.--
T Consensus 699 n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 699 NLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHHCCChHHHHHHHHHHH
Confidence 88888999999988886543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-64 Score=584.76 Aligned_cols=508 Identities=20% Similarity=0.313 Sum_probs=443.0
Q ss_pred CcchHHHHHHhhcccCC-Chh--hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHH
Q 003433 138 DDVSLGDILKKFEFKLC-GAD--DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214 (820)
Q Consensus 138 ~~~~~~~~l~~~~~~~~-~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (820)
....+..+++.|..... .++ .+..++..|.+.|.+++|+++|+.|.. ++..+|+.++.+|++.|++++|.+
T Consensus 385 ~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~------pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 385 RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN------PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 34556677888876553 222 456689999999999999999998853 456799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g 294 (820)
+|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.++|+.||.+|++.| ++++|+++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH
Q 003433 295 VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH--RGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY 372 (820)
Q Consensus 295 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 372 (820)
+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||.++|++|+.+|++.|++++|+++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh------------hhhhhhhccCchhhhhhccchHH
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES------------ANLDAMCSQDDKDVQEAGRTDNQ 600 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 600 (820)
++|.+.|+.||..+|++|++.|.+ .++++....+..+...... ..+..|...+..+.. .+++.
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~---~T~~~ 852 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM---EVLSQ 852 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH---HHHHH
Confidence 999999999999999999987642 3444443322222111100 000111111111110 22333
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 601 IIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
++..+. ..+....+..+++.|...+..|+..+|++|+++|++. .++|..+|++|...
T Consensus 853 vL~cl~---------------~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~ 909 (1060)
T PLN03218 853 VLGCLQ---------------LPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHhc---------------ccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence 332211 1125667778888887788889999999999998543 47899999999854
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=534.04 Aligned_cols=463 Identities=20% Similarity=0.320 Sum_probs=421.1
Q ss_pred HHHHHHHHhccCCcchHHHHHHhhcccC---CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH
Q 003433 126 EEALHHVTAFARDDVSLGDILKKFEFKL---CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI 202 (820)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 202 (820)
...+..+...++. ..+..++..+.... .+...|+.++.++.+.++++.|.+++..|.+.+. .++..+++.++.+
T Consensus 91 ~~~i~~l~~~g~~-~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~~~~~n~Li~~ 167 (697)
T PLN03081 91 CSQIEKLVACGRH-REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF--EPDQYMMNRVLLM 167 (697)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence 3344444444443 33445555554322 3456789999999999999999999999998874 3456799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 282 (820)
|++.|++++|+++|++|.+ +|+.+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.| ..+.
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~~~ 242 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SARA 242 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cHHH
Confidence 9999999999999999964 6999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.+ +|.++||+|+.+|++.|++++|+++|++|.+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999964 5899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 363 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.+|..+|++||++|++.|++++|.++|++|. .+|..+|
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-AGLKADVVLYSALIDALCK 521 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~ 521 (820)
|+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999976 6999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHH
Q 003433 522 NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (820)
Q Consensus 522 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (820)
.|++++|.+++++| ++.||..+|++|+.+|...|+++.|..
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~------------------------------------ 515 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL------------------------------------ 515 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH------------------------------------
Confidence 99999999999876 578999999999999999998876644
Q ss_pred HHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 003433 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD 675 (820)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~ 675 (820)
+++++.+ +.|+ ..+|+.|+++|++.|++++|.+++++|.+.+
T Consensus 516 ------------------------------~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 516 ------------------------------AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ------------------------------HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 4444443 5664 5689999999999999999999999998654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=350.94 Aligned_cols=572 Identities=13% Similarity=0.073 Sum_probs=447.2
Q ss_pred hcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003433 149 FEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV 228 (820)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 228 (820)
+...+..+..+..+...+.+.|++++|++.++.++... +.+..++..++..+.+.|++++|.++|+++.+..+ .+.
T Consensus 322 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 397 (899)
T TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENA 397 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCH
Confidence 33344455667778888899999999999999888764 34456778889999999999999999999887643 367
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
..+..+...+...|++++|++.|+++.+.... +...+..++..+.+.| ++++|..+++++.... ..+..++..+...
T Consensus 398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 474 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG-QFDKALAAAKKLEKKQ-PDNASLHNLLGAI 474 (899)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC-CHHHHHHHHHHHHHhC-CCCcHHHHHHHHH
Confidence 78888889999999999999999998875433 3445566777888888 8999999999988753 3467788888999
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.++|+++...+.. +..++..+...+.+.|+.++|
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 552 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEA 552 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988764 345677888889999999999999999998876533 677888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..+++++...+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+..+|..++.+|.+.|++++|...|+++.+.
T Consensus 553 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 630 (899)
T TIGR02917 553 VAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630 (899)
T ss_pred HHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988765 5566778888899999999999999999887654 567888999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYN 548 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 548 (820)
. +.+...+..++.+|.+.|++++|..+|+++.+... .+..+|..++..+...|++++|.++++.+.+.+ ..+...+.
T Consensus 631 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 631 Q-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 3 44677788888999999999999999999887653 367888889999999999999999999998764 34666888
Q ss_pred HHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHH
Q 003433 549 SIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILC 628 (820)
Q Consensus 549 ~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (820)
.+...+.+.|++++|+..+++++...+... .+..+..++.+. |+.++
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~---------------g~~~~ 754 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQ------------------NAIKLHRALLAS---------------GNTAE 754 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCch------------------HHHHHHHHHHHC---------------CCHHH
Confidence 888888999999999999998888766541 122233344322 36677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhc
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 707 (820)
|++.++++++... .+..++..++..|.+.|++++|.++|+++.+.+|++..+..++...+ ..|+ .+|+.+++++++.
T Consensus 755 A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 8888888877322 25667788888888888888888888888888887777666665554 3455 7788888888888
Q ss_pred CCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHH
Q 003433 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w 771 (820)
.|++ +..+..++.+|.+.|++++|.++++++.+.+..+.....+.++++ ...|....|...|
T Consensus 833 ~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~ 894 (899)
T TIGR02917 833 APNI-PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL-LATGRKAEARKEL 894 (899)
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 8854 666888888888888888888888888776654332222334443 3367667776665
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=344.05 Aligned_cols=629 Identities=14% Similarity=0.047 Sum_probs=437.7
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.+..+......+...|++++|++.|+.+++.+ +.....+..++..+...|++++|...|+.+.+..+ .+...+..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l 335 (899)
T TIGR02917 260 SPLAHYLKALVDFQKKNYEDARETLQDALKSA---PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLL 335 (899)
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 34444445555667788888888888887764 22233455567777788888888888888877643 356677778
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+..+.+.|++++|...++.+.+... .+...+..+...+.+.| ++++|.++|+++.+.... +...+..+...+...|+
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALG-DFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCC
Confidence 8888888888888888888876543 25677777888888888 888888888888775432 56667777777888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
+++|.+.|+.+.+... ........++..+.+.|++++|+++++++.... ..+..+|..+...|...|++++|.+.|++
T Consensus 413 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 413 PSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred hHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8888888888877542 234455667777888888888888888877653 33667778888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (820)
Q Consensus 395 m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 474 (820)
+.+.. +.+...+..++..+...|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|..+|+++...+ +.+.
T Consensus 491 a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 491 ALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred HHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 77654 4455667777778888888888888888877655 4567777788888888888888888888877653 4456
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
..+..++..|.+.|++++|..+++.+.+... .+...|..++.+|.+.|++++|+..|+++.+.. ..+...+..+..++
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 6777778888888888888888888876543 367778888888888888888888888887642 22455777777788
Q ss_pred hhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC------ccchhhhhhHHH
Q 003433 555 GRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG------KKENRCRQEILC 628 (820)
Q Consensus 555 ~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 628 (820)
.+.|++++|+..++++++..+............... ...+...+..+..+........ .......+++++
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLA----AKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 888888888888888877766543221111111000 0222333333333221100000 000223457889
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhc
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLM 707 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~ 707 (820)
|++.|+++.. ..|+..++..++.++.+.|++++|.+.++++++.+|.+..+...+...+ ..|++++|+..|+++++.
T Consensus 722 A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 722 AIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 9999999987 4466677788899999999999999999999988888776666655545 578999999999999999
Q ss_pred CCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHHHHhhcCCCCCh
Q 003433 708 DSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIHSIVFEGHELPK 787 (820)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w~~~~~~~~~~g~~~~~ 787 (820)
+|++ +..++.+++++.+.|+ .+|..+++++.+....+.......+.++ ...|....|+..+ +++++.+...+.
T Consensus 800 ~p~~-~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~----~~a~~~~~~~~~ 872 (899)
T TIGR02917 800 APDN-AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL-VEKGEADRALPLL----RKAVNIAPEAAA 872 (899)
T ss_pred CCCC-HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHcCCHHHHHHHH----HHHHhhCCCChH
Confidence 9965 6779999999999999 8899999888765433222112223333 3356666666554 566665543343
Q ss_pred ---hHHHHHHHhhhhhhHHHHHHhhh
Q 003433 788 ---LLRYMIICLSVADECLLLLKFHL 810 (820)
Q Consensus 788 ---~~~~~~~~~~~~~~~~~~~~~~~ 810 (820)
.+.......|..+|+...++.-+
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 22333334488999888877643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-25 Score=272.63 Aligned_cols=617 Identities=12% Similarity=0.042 Sum_probs=357.6
Q ss_pred ccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhH-------------HHHHHHH
Q 003433 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGK-------------LASAMIS 201 (820)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~~l~~ 201 (820)
..+++.+...+.+.+...+.+++.+..++..+.+.|+.++|.+.+++..+..+..+.... ....++.
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ 120 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQAR 120 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHH
Confidence 344444444444445556667888888999999999999999999999988643322110 1133455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH
Q 003433 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK 281 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 281 (820)
.+.+.|++++|.+.|+.+.+.+.+........+.......|+.++|++.|+++.+..+. +...+..+...+...| +.+
T Consensus 121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g-~~~ 198 (1157)
T PRK11447 121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSG-RRD 198 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccC-CHH
Confidence 78889999999999999987643322222222222233468999999999999886433 5667778888888888 899
Q ss_pred HHHHHHHHHHHCCCCC----------------CH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 282 HVVEIFDDMLRNGVQP----------------DR---ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD 342 (820)
Q Consensus 282 ~A~~~~~~m~~~g~~p----------------~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~ 342 (820)
+|+..++++.+..... +. ..+...+..+-.....+.|...+.++......|+.. ...+..
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~ 277 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGL 277 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHH
Confidence 9999999886542110 00 001111111111122334444444433322122211 122344
Q ss_pred HHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HH
Q 003433 343 AICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL-DRVSY------------NT 409 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-d~~~~------------~~ 409 (820)
.+...|++++|+..|++..+.... +...+..|..+|.+.|++++|+..|++..+..... +...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 555666666666666666654322 45566666666666666666666666666542111 11111 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+...+.+.|++++|+..|+++++.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+...|. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 2334556666666666666666554 3445556666666666666666666666666542 223444555555543 345
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCch
Q 003433 490 YKEAMQIFREFKQAGLK--------ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATT 560 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~ 560 (820)
.++|..+++.+...... .....+..+...+...|++++|++.|+++++. .|+ ...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 56666555543221000 01122344455555666666666666666653 333 33555555666666666
Q ss_pred hhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHH----------------HHhcCCccchhhhh
Q 003433 561 ECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVA----------------EKAGQGKKENRCRQ 624 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 624 (820)
++|+..++++++..|...........-... ...+...+..+.++.. ...-.........+
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~----~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSG----SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 666666666665554433211100000000 0001111111111000 00000000122345
Q ss_pred hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHH
Q 003433 625 EILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~ 703 (820)
+.++|+.+++. ...+...+..++..+.+.|++++|++.|+++++.+|++.....++...+ ..|++++|++.+++
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77888888772 2234556778999999999999999999999999999888877776655 57899999999999
Q ss_pred HhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhh------hhhccchhhhhcchhHHHHHHHHH
Q 003433 704 VKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWEN------VWSESCLDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~d~~~~~~g~~~~~~~~w 771 (820)
+++.+|.+ ...+..++.++...|++++|.++++++........ ....+.++++ ...|....|+..|
T Consensus 663 ll~~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~-~~~G~~~~A~~~y 734 (1157)
T PRK11447 663 LPATANDS-LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFE-AQTGQPQQALETY 734 (1157)
T ss_pred HhccCCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 99998854 66788899999999999999999998876532211 1112234444 2367777777777
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-25 Score=269.14 Aligned_cols=568 Identities=11% Similarity=0.044 Sum_probs=377.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
..+.+.+...|++++|++.|+.++...+ +................|+.++|++.++++.+..+ .+...+..+...+.
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p--~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAP--PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLF 192 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCC--CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3345678899999999999999987642 22111111122223356999999999999998754 47888999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHH-----------------HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPN--LVT-----------------YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~--~~~-----------------~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~ 300 (820)
..|+.++|++.|+++.+...... ... +...+..+-... ..+.|...+.++......|+..
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~-~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD-SVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch-HHHHHHHHHHHHHHhccCcchH
Confidence 99999999999999876321100 011 111122222222 3445555555554432233322
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHH------
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYS------ 373 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~------ 373 (820)
. ......+...|++++|+..|++.++.. +.+...+..|...|.+.|++++|+..|++..+...... ...|.
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 233556778899999999999988864 34678888899999999999999999998887543211 11121
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 374 ------TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 374 ------~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
.+...+.+.|++++|+..|+++.+.. +.+...+..+...|...|++++|++.|+++++.. +.+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 22456778899999999999988874 4566777788889999999999999999988765 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCV--------SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.|. .++.++|..+++.+..... .-....+..+...+...|++++|++.|++.++..+. +...+..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 764 4577888888776532210 001223455677788888999999999888887643 567777888888
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh--hhhhhhccCc----hhhh
Q 003433 520 CKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA--NLDAMCSQDD----KDVQ 592 (820)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~--~~~~~~~~~~----~~~~ 592 (820)
.+.|++++|+..|+++++. .| +...+..+...+.+.|+.++|+..+++......... .+...+.... ...-
T Consensus 506 ~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 8889999999998888764 33 344555555556777888888877765432111000 0000000000 0000
Q ss_pred hhccchHHHHHHHHHHHHHH--hcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 003433 593 EAGRTDNQIIKVFGQLVAEK--AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
.........+..+....... .......+...+++++|++.|++.++ ..| |...+..++.+|...|++++|++.|+
T Consensus 584 ~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 584 RDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 00011111222211000000 00000012345689999999999998 456 46678899999999999999999999
Q ss_pred HHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcch-----hHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 670 ELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTAS-----AFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
.+.+.+|.+......+...+ ..|++++|.++++++++..|+..+ ..+..++.++...|++++|...++.++.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99988887766655554444 688999999999999987664422 4567789999999999999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-25 Score=226.33 Aligned_cols=459 Identities=16% Similarity=0.196 Sum_probs=346.9
Q ss_pred HHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 143 GDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
..+++++.......+....+...+.+.|++.+|.+.....-+++....+ ..-.+..++.+..+++....--...++.
T Consensus 35 ~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~---~llll~ai~~q~~r~d~s~a~~~~a~r~ 111 (966)
T KOG4626|consen 35 SSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTE---RLLLLSAIFFQGSRLDKSSAGSLLAIRK 111 (966)
T ss_pred hHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCccc---ceeeehhhhhcccchhhhhhhhhhhhhc
Confidence 3455665555555666777888889999999999988777666533222 3334566677778888777666666655
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
. +.-..+|..+.+.+...|++++|+.+++.+.+...+ .+..|..+..++...| +.+.|.+.|.+.++. .|+....
T Consensus 112 ~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~-~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 112 N-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQG-DLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred c-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcC-CCcccHHHHHHHHhc--Ccchhhh
Confidence 3 235778999999999999999999999999985433 6778999999999999 999999999999885 5665544
Q ss_pred H-HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHH
Q 003433 303 N-SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYA 380 (820)
Q Consensus 303 ~-~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 380 (820)
. .+.......|++++|...|.+.++.. +--.+.|+.|...+-..|+...|++.|++..+.+ |+ ...|-.|...|.
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYK 263 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHH
Confidence 3 34445566899999999998888753 1235678888888888999999999999888763 43 457888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (820)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (820)
..+.++.|+..+.+..... +-..+.+..|...|...|.+|.|+..|++.++.. +.-...|+.|..++-..|++.+|.+
T Consensus 264 e~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~ 341 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVD 341 (966)
T ss_pred HHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHH
Confidence 8888899888888877663 3345778888888888899999999998888764 3446788888888888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 461 MFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (820)
Q Consensus 461 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (820)
.|.+.+... +-.....+.|...|...|++++|..+|....+..+. -...++.|...|-++|++++|+..|++.+. +
T Consensus 342 cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 342 CYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 888887762 334567788888888888888888888888775322 345678888888888888888888888887 5
Q ss_pred CCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 541 RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 541 ~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
.|+.. .|+.+...|-..|++..|
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A-------------------------------------------------------- 441 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAA-------------------------------------------------------- 441 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHH--------------------------------------------------------
Confidence 77754 555555555555555444
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
++.+.+.+. ++|. ...++.|.++|-..|+..+|++.|+++++++|+......+++
T Consensus 442 ----------~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 442 ----------IQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred ----------HHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 444554444 5554 345778888999999999999999999988887766655554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-22 Score=236.39 Aligned_cols=548 Identities=9% Similarity=0.003 Sum_probs=338.2
Q ss_pred CCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHH
Q 003433 137 RDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIF 216 (820)
Q Consensus 137 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 216 (820)
..++++..+-..++..+.++..+..+.+.|.+.|++++|+..++++++.+ |.+...+..+ +..++.++|..+|
T Consensus 59 d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~L----a~i~~~~kA~~~y 131 (987)
T PRK09782 59 DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSL----AAIPVEVKSVTTV 131 (987)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHH----HHhccChhHHHHH
Confidence 33344444444455555556666667777777777777777777777663 3333333333 2226677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHcCCCCHHHHHHHH
Q 003433 217 ETALNEGYGNTVYAFSALISA--------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV-IDACGKGGVDFKHVVEIF 287 (820)
Q Consensus 217 ~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~~A~~~~ 287 (820)
+++.+..+. +..++..+... |.+.++..+|++ .......|+..+.... ...|.+.+ ++++|++++
T Consensus 132 e~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~-dw~~Ai~lL 205 (987)
T PRK09782 132 EELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLK-QWSQADTLY 205 (987)
T ss_pred HHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 777665433 44555555554 555544344443 2222233334433333 66666677 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC
Q 003433 288 DDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 288 ~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
.++.+.+.. +..-...|..+|.. .++ +++..++.. .+..+...+..++..|.+.|+.++|.++++++......
T Consensus 206 ~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 777776543 34445555556665 355 666666443 22246666777777777777777777777776543222
Q ss_pred -CCHHHHHH------------------------------HHHHHHHcCCHHHHHHHHH----------------------
Q 003433 367 -PNVVTYST------------------------------MIDGYAKAGRLDDALNMFS---------------------- 393 (820)
Q Consensus 367 -p~~~~~~~------------------------------li~~~~~~g~~~~A~~~~~---------------------- 393 (820)
|+..+|.- ++..+.+.++++.+.++..
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 33333311 1333444444444433321
Q ss_pred -------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH
Q 003433 394 -------EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGK---YDEVRRM 461 (820)
Q Consensus 394 -------~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 461 (820)
.|.+.. +-+....--+.-...+.|+.++|..+|+..... +...+....+-|+..|.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 360 EALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 000000 001111122222334567777777777766541 112344455566677766655 2222222
Q ss_pred -------------------------HHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 462 -------------------------FEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 462 -------------------------~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+...... .++ +...|..+..++.. ++.++|+..|.+..... |+......
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 1111111 133 56677777777776 78888888777776653 55444444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 594 (820)
+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|...+.+++...+....+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l-------------- 578 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL-------------- 578 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--------------
Confidence 455556888888888888887653 4555566677777888888888888888887765443211
Q ss_pred ccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 595 GRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
....... ....|++++|+..|++.++ +.|+...|..++.++.+.|++++|+..|++++..
T Consensus 579 ------~~~La~~------------l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 579 ------YWWLHAQ------------RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred ------HHHHHHH------------HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 0000000 0112478899999999987 6788888999999999999999999999999999
Q ss_pred CCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 675 DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 675 ~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+|++..+..++...+ ..|++++|+.+++++++.+|++ +..+..++++|...|++++|+..++++.+....
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999998887776555 5789999999999999999965 778999999999999999999999998776543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-24 Score=216.32 Aligned_cols=451 Identities=14% Similarity=0.111 Sum_probs=264.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
..|..-..+.|++.+|++.-..+-.++. .+....-.+-..+.+..+++.....-....+... .-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHh
Confidence 4555666667777777665544433322 1233333444455555555554444333333211 1345666666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF-TYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~ 355 (820)
| ++++|+.+|+.+++...+ ....|..+..++...|+.+.|.+.|.+.++. .|+.. ..+.+...+-..|++++|..
T Consensus 130 g-~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 G-QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred c-hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 6 666666666666665322 4555666666666666666666666666654 23332 22334444444566666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
.|.+.++.... =.+.|+.|...+-.+|++..|+..|++.++.+ +.=...|..|...|...+.+++|...|.+.....
T Consensus 206 cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 206 CYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 66655554211 23456666666666666666666666665542 1123455556666666666666666665554432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+...+.+..+...|...|.+|.|+..|++.++. .|+ ...|+.|..++-..|++.+|...|.+.+..... -....+.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 233455555555555666666666666665554 333 345555555555555555555555555554321 3344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQE 593 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 593 (820)
|...|...|++++|..+|....+ +.|+.. ..+.|...|-+.|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqg----------------------------------- 402 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQG----------------------------------- 402 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcc-----------------------------------
Confidence 55555555555555555555554 334332 3444444444444
Q ss_pred hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
++++|+..+++.+. |+|+ ...|+.+++.|-..|++++|.+.+..+.
T Consensus 403 -------------------------------nl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 403 -------------------------------NLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred -------------------------------cHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 44456666776666 8887 4569999999999999999999999999
Q ss_pred hcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchH
Q 003433 673 LFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (820)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (820)
.++|.-.....++...++ .|+..+|+.-|+.+++++|+. +..|-.|...+--..+|.
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHHHHHHhccc
Confidence 999987777778777775 799999999999999999965 444555555444333443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-21 Score=225.42 Aligned_cols=550 Identities=11% Similarity=0.017 Sum_probs=386.0
Q ss_pred HHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH--------
Q 003433 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-------- 202 (820)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-------- 202 (820)
.+...++.+.+...+-+.+...+.+...+..+ ..+ +++++|+++|++++... |.+..++..+...
T Consensus 87 ~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~ 159 (987)
T PRK09782 87 AYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNALR 159 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHHHHHhC---CCChhHHHHHHHHhhccchhh
Confidence 34445555555555555565554333333333 222 89999999999999985 4444466556665
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCCCH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSA-LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-GGVDF 280 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~ 280 (820)
|.+. ++|.+.++ .......++..+... +...|.+.|++++|++++.++.+.++. +......|...|.+ .+ +
T Consensus 160 y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~-~- 232 (987)
T PRK09782 160 LAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL-D- 232 (987)
T ss_pred hhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC-H-
Confidence 6655 44554444 322223334444444 499999999999999999999997654 45556777778887 46 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHH--H-------------------
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTY--N------------------- 338 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~--~------------------- 338 (820)
+.+..+++.. ++-+...+..++..|.+.|+.++|.++++++...-.. |...+| +
T Consensus 233 ~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 233 DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 7888886542 3358889999999999999999999999998765322 333333 2
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHchhC--------CC--------------------CCCHHHHHHHHHHHHH
Q 003433 339 ---------TLLDAICKGAQMDLAFEIMAEMPAK--------NI--------------------SPNVVTYSTMIDGYAK 381 (820)
Q Consensus 339 ---------~ll~~~~~~g~~~~A~~~~~~m~~~--------g~--------------------~p~~~~~~~li~~~~~ 381 (820)
.++..+.+.++++.++++.+.-... +. .-+......+.....+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~ 388 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQ 388 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1245556667777666554311100 00 0122333333444567
Q ss_pred cCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCC---HHHHHHH-------------------------HHHHH
Q 003433 382 AGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGR---FEEALLV-------------------------CKEME 431 (820)
Q Consensus 382 ~g~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~---~~~A~~~-------------------------~~~~~ 431 (820)
.|+.++|..+|+..... +...+.....-|+..|.+.+. ..++..+ +....
T Consensus 389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL 468 (987)
T ss_pred cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence 89999999999998763 123345556678888877766 3333222 11122
Q ss_pred HCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 432 SSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV 509 (820)
Q Consensus 432 ~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 509 (820)
... +. +...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... .|+.
T Consensus 469 ~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~ 542 (987)
T PRK09782 469 GDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSN 542 (987)
T ss_pred ccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCc
Confidence 111 34 67788888888877 8999999988888765 466555445566667899999999999998664 3455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCc
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDD 588 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 588 (820)
..+..+..++.+.|+.++|...|++.++.. |+.. .+..+...+.+.|++++|+..++++++..|..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~----------- 609 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSA----------- 609 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH-----------
Confidence 567778889999999999999999999863 4443 44444455567799999999999999887742
Q ss_pred hhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 003433 589 KDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASML 667 (820)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~ 667 (820)
..+..+..++.+ .++.++|+..|++.+. ..|+ ...+..++.++...|++++|+++
T Consensus 610 -------~a~~~LA~~l~~---------------lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 610 -------NAYVARATIYRQ---------------RHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred -------HHHHHHHHHHHH---------------CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 112223333332 2478899999999998 6675 55688899999999999999999
Q ss_pred HHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 668 LEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
|+++++.+|++..+..++...+ ..|++++|+..++++++++|+. ..+....++++.+..+++.|.+-+..+...
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999998888887766 6899999999999999999965 677999999999999999999877655433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-21 Score=209.42 Aligned_cols=558 Identities=14% Similarity=0.107 Sum_probs=404.2
Q ss_pred hHHHHHHHH--HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 158 DYTFLLREL--GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 158 ~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
....+.+++ ...++|..|+.+|..++...+....+ ....+..++.++|+.+.|+..|..++..++ .++.++..|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHH
Confidence 444455554 46789999999999999887666655 334677888999999999999999998754 2455554444
Q ss_pred HHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHH
Q 003433 236 SAYGRS---GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSLLAVCS 310 (820)
Q Consensus 236 ~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~ 310 (820)
-.-... ..+..++.++...-..... |.+..+.|.+.|.-.| ++..+..+...+...... .-...|..+.++|.
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 433333 3455677777776654332 6778888888888888 999999999999875321 12345888999999
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHH
Q 003433 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLD 386 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~ 386 (820)
..|++++|..+|.+..+..-..-+..+-.|..+|.+.|+++.+...|+++.+... -+..+...|...|...+ ..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d 397 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRD 397 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHH
Confidence 9999999999999888764222245566789999999999999999999988643 26678888888888775 568
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM----ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
+|..++.+..+.. +.|...|..+...+....-+. ++.+|..+ ...+..+.+...|.+...+...|++++|...|
T Consensus 398 ~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f 475 (1018)
T KOG2002|consen 398 KASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHF 475 (1018)
T ss_pred HHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHH
Confidence 8888888877764 567788888887776554443 36666543 44555678899999999999999999999999
Q ss_pred HHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 003433 463 EQMKAD---CVSPNL------LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 463 ~~m~~~---~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
...... ...+|. .+--.+...+-..++++.|.++|..+++.. |.. ..|-.++......+...+|...+
T Consensus 476 ~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~l 553 (1018)
T KOG2002|consen 476 KSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLL 553 (1018)
T ss_pred HHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHH
Confidence 988765 122333 233346667777889999999999998864 443 33444443344457789999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHH
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEK 612 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (820)
++.+..+ .-+...+..+.+.+.+...+..|.+-++..+.......+.+.++..| +.|-+- .
T Consensus 554 k~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG---------------N~~~~~---l 614 (1018)
T KOG2002|consen 554 KDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG---------------NVYIQA---L 614 (1018)
T ss_pred HHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh---------------HHHHHH---h
Confidence 9998752 44666777777788888888777775555554433322222222221 211110 0
Q ss_pred hcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-c
Q 003433 613 AGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R 690 (820)
Q Consensus 613 ~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~ 690 (820)
...........+++++|+++|.+.+. ..| |...-+.++-.++..|++.+|+.+|.++++.-.+...++.++...| .
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 11111123456789999999999998 455 7777889999999999999999999999865444455555555444 6
Q ss_pred cchHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 691 DNIWVQALSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
.|.|..|+++|+.+++ ..++++..+..+|+.++++.|++.+|.+....++...+.+
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 8999999999999876 4566778999999999999999999999988887665544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-20 Score=211.34 Aligned_cols=428 Identities=11% Similarity=0.025 Sum_probs=250.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+...+..+.+.|++++|+..|+++++. .|+...|..+..+|.+.|++++|++.++..++.... +...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4556666777777777777777777654 345556666666677777777777777666653321 4455666666666
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
..| ++++|+..|..+...+...+.. ...++..+.. ..+........+.
T Consensus 206 ~lg-~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~-------------------------- 253 (615)
T TIGR00990 206 GLG-KYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILET-------------------------- 253 (615)
T ss_pred HcC-CHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhc--------------------------
Confidence 666 6666666665544332111111 1111111100 1111111111111
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSI---YAKLGRFEEALLVCKEM 430 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~---~~~~g~~~~A~~~~~~~ 430 (820)
-. .+...+..+.. |......+....-+.+..+. .++ ...+..+... ....+++++|.+.|++.
T Consensus 254 -----~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~a 320 (615)
T TIGR00990 254 -----KP-----ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKA 320 (615)
T ss_pred -----CC-----CCCCCHHHHHH-HHHHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11 01111111111 11111111111111111100 000 0001111111 12345677777777777
Q ss_pred HHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 431 ESSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 431 ~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
.+.+ .+.+...|+.+...+...|++++|+..|++.++.. +-+...|..+...+...|++++|...|+++++.... +
T Consensus 321 l~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~ 398 (615)
T TIGR00990 321 LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-D 398 (615)
T ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C
Confidence 7653 12344567777777777888888888888877652 223557777777777888888888888887776533 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccC
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD 587 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 587 (820)
...|..++..+...|++++|+..|++.++. .|+ ...+..+..++.+.|++++|+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~---------------------- 454 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA---------------------- 454 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH----------------------
Confidence 677777888888888888888888888774 344 3455556666666665555444
Q ss_pred chhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHH
Q 003433 588 DKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASM 666 (820)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~ 666 (820)
.|++.+. ..| +...+..++.++...|++++|++
T Consensus 455 --------------------------------------------~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 455 --------------------------------------------TFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred --------------------------------------------HHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 4444443 334 35567778888888899999999
Q ss_pred HHHHHhhcCCchhHHHHHH-------Hhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 667 LLEELRLFDNQVYGVAHGL-------LMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
.|++++..+|.......+. +..+ ..+++++|+.+++++++++|++ ...+..|+++|.+.|++++|.+++++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999888776543221111 1112 2589999999999999999965 56799999999999999999999998
Q ss_pred hhhhh
Q 003433 739 GKRRQ 743 (820)
Q Consensus 739 ~~~~~ 743 (820)
+.+..
T Consensus 568 A~~l~ 572 (615)
T TIGR00990 568 AAELA 572 (615)
T ss_pred HHHHh
Confidence 86653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-18 Score=198.92 Aligned_cols=440 Identities=13% Similarity=0.043 Sum_probs=230.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..+......+.+.|++++|+..|++++...+ + ...|..+..+|.+.|++++|+..++.+++.++ .+..+|..+..
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~ 202 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKP---D-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---c-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 3456688889999999999999999998753 2 45788999999999999999999999998753 36889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
+|...|++++|+..|..+...+...+.. ...++..+.. ..+........+.... +...+..+.. +......+
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~-----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~ 274 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK-----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPK 274 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH-----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCC
Confidence 9999999999999998776543221222 1222221111 2233333333332111 1112222222 21111111
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHH---HhcCCHHHHHHHHHHchhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQD-IFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKN-ISP-NVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~-~~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
....-+....+. .+. ...+..+...+ ...+++++|++.|++..+.+ ..| +...|..+...+...|++++|+.
T Consensus 275 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 275 PRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 111111111110 010 00011111000 12244555555555555432 111 22344444455555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.|++..+.. +-+...|..+...+...|++++|+..|+++++.. +.+..+|..+...|...|++++|...|++.++..
T Consensus 353 ~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~- 429 (615)
T TIGR00990 353 DLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD- 429 (615)
T ss_pred HHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 555554442 2223344444555555555555555555544433 3334444445555555555555555555544432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
+.+...+..+..++.+.|++++|+..|++.++..+ .+...|+.+...+...|++++|++.|++
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------- 492 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDT---------------- 492 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH----------------
Confidence 22333444444444444555555555544444321 1344444444444444444444444444
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHH
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCIL 630 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al 630 (820)
+++..+......... . ..++.....|. ..+++++|+
T Consensus 493 -------------------Al~l~p~~~~~~~~~----~------~l~~~a~~~~~---------------~~~~~~eA~ 528 (615)
T TIGR00990 493 -------------------AIELEKETKPMYMNV----L------PLINKALALFQ---------------WKQDFIEAE 528 (615)
T ss_pred -------------------HHhcCCccccccccH----H------HHHHHHHHHHH---------------HhhhHHHHH
Confidence 444433211000000 0 00000011111 123778899
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 631 GVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 631 ~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.++++.+. +.|+ ..++..++.++.+.|++++|.++|+++.++...
T Consensus 529 ~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 529 NLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 99999887 4565 456889999999999999999999998866554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-19 Score=190.20 Aligned_cols=544 Identities=13% Similarity=0.091 Sum_probs=384.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL---GKVDLAKNIFETALNEGYGNTVYA 230 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 230 (820)
+.+|....+...+.+.++.+.|+..|.++++.++ ..+.++..|...-... ..+..|..++..+-..+. .|+++
T Consensus 197 ~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp---~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~ 272 (1018)
T KOG2002|consen 197 CKADVRIGIGHCFWKLGMSEKALLAFERALQLDP---TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVA 272 (1018)
T ss_pred cCCCccchhhhHHHhccchhhHHHHHHHHHhcCh---hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHH
Confidence 4566777777888999999999999999999863 4444444444433333 345667777777766543 47889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
.+.|.+.|.-.|++..+..+...+......- -...|..+.++|-..| ++++|..+|.+..+....-.+..+..|...
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G-d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG-DFEKAFKYYMESLKADNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHccCCCCccccccchhHH
Confidence 9999999999999999999999998643211 2345778899999999 999999999998876333224556678889
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA----QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
|.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.-+ .|...|-.+...|....-
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcCh
Confidence 999999999999999999863 456778888888888775 67888888888877643 377788887777766554
Q ss_pred HHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHh
Q 003433 385 LDDALNMFSEMK----FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS---GIRKDA------VTYNALLGGYGK 451 (820)
Q Consensus 385 ~~~A~~~~~~m~----~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~ 451 (820)
+.. +..|..+. ..+..+-....|.+...+...|++++|...|+..... ...+|. .+-..+...+-.
T Consensus 430 ~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 430 WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 443 77766543 4555678899999999999999999999999987654 112232 233346777788
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
.++.+.|.++|..++.. .|+ +..|..++.+....++..+|...++...+.+- -++..+..++..+.+...+..|.+
T Consensus 509 l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred hhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhccccc
Confidence 89999999999999887 355 34566666555566889999999999987653 477788888889999999999999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHhh------------cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccc
Q 003433 531 LLDEMTKE-GIRPNVVTYNSIIDAFGR------------SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRT 597 (820)
Q Consensus 531 ~~~~m~~~-g~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (820)
-|+...+. ...+|..+..+|.+.|.+ .+..++|++.|.++|...|.+. ..
T Consensus 586 ~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~-----------------yA 648 (1018)
T KOG2002|consen 586 KFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM-----------------YA 648 (1018)
T ss_pred HHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh-----------------hh
Confidence 77777654 223677777788876632 3445667777777777766542 12
Q ss_pred hHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhh-cC-
Q 003433 598 DNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRL-FD- 675 (820)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~-~~- 675 (820)
.|++.-.++ ..+.+.+|+.+|.+..+... -+..+|..|+..|.-+|++-.|+++|+.... ..
T Consensus 649 ANGIgiVLA---------------~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~ 712 (1018)
T KOG2002|consen 649 ANGIGIVLA---------------EKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK 712 (1018)
T ss_pred ccchhhhhh---------------hccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222222 22356678888888776443 1344567888888888888888888887653 22
Q ss_pred CchhHHHHHHHhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH-------------------hhcCchHHHHHH
Q 003433 676 NQVYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDML-------------------WHFGQKRGAQLV 735 (820)
Q Consensus 676 ~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g~~~~A~~~ 735 (820)
.++..+++.+.-. |+.|.|.+|.....++....|.+... ...++-++ ...+..++|.++
T Consensus 713 ~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v-~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~ 791 (1018)
T KOG2002|consen 713 KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV-KFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRL 791 (1018)
T ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH-HhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 2344555444333 35677888888888888877765433 33333332 333556677777
Q ss_pred HHHhhhh
Q 003433 736 VLEGKRR 742 (820)
Q Consensus 736 ~~~~~~~ 742 (820)
|..+...
T Consensus 792 F~~ls~~ 798 (1018)
T KOG2002|consen 792 FTELSKN 798 (1018)
T ss_pred HHHHHhc
Confidence 7665433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-20 Score=201.91 Aligned_cols=309 Identities=14% Similarity=0.142 Sum_probs=202.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCC
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD---RITFNSLLAVCSRGGL 314 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~ 314 (820)
+...|++++|+..|+++.+.+.. +..++..+...+...| ++++|..+++.++..+..++ ..++..++..|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555443211 2334444444555555 55555555555544321111 1345555666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN----VVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~ 390 (820)
+++|+.+|+++.+.. +.+..+++.++..+.+.|++++|++.++++.+.+..++ ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666666542 23455666666666666666666666666665433221 1234556667777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 888877653 33456677777888888888888888888876542222456778888888999999999999888876
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK---NGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
.|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..++. .|+.++++.++++|.+.++.|+..
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~-- 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR-- 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC--
Confidence 466666788888899999999999999888775 4788888888877775 558889999999998876666655
Q ss_pred HHHHHHHhhcCch
Q 003433 548 NSIIDAFGRSATT 560 (820)
Q Consensus 548 ~~ll~~~~~~g~~ 560 (820)
..|.++|-.
T Consensus 355 ----~~c~~cg~~ 363 (389)
T PRK11788 355 ----YRCRNCGFT 363 (389)
T ss_pred ----EECCCCCCC
Confidence 346666644
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-20 Score=199.52 Aligned_cols=301 Identities=17% Similarity=0.153 Sum_probs=177.9
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCC
Q 003433 202 ILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN---LVTYNAVIDACGKGGV 278 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~ 278 (820)
.+...|++++|...|+++.+.++ .+..++..++..+...|++++|+.+++.+...+..++ ...+..+...+.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 34455555556666665555432 2444555555555666666666666655554321111 134555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~ 354 (820)
++++|..+|+++.+.. ..+..++..++.++.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|+
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5666666666665432 22445566666666666666666666666655432211 123445566666677777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
.+|+++.+... .+...+..+...|.+.|++++|+++|+++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77776665432 13455666667777777777777777776655311123456667777777777777777777776543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK---GGLYKEAMQIFREFKQAGLKADVV 510 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 510 (820)
|+...+..++..+.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.+++..+|++|.+.++.+++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 44455566777777777777777777776664 5677777766666554 446777777777777655555444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-19 Score=199.49 Aligned_cols=329 Identities=11% Similarity=0.003 Sum_probs=163.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 278 (820)
++..+.+.|++++|..+++.++...+. +...+..++......|++++|+..|+++.+..+. +...+..+...+.+.|
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g- 124 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK- 124 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC-
Confidence 344445555555555555555544222 3344444444445555555555555555543221 3344444455555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
++++|+..|+++++.... +...+..++..+...|++++|...++.+...... +...+..+ ..+.+.|++++|+.+++
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 555555555555543211 3444455555555555555555555555443211 22222222 22445555555555555
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEE----ALLVCKEMESSG 434 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~ 434 (820)
.+.+....++...+..+...+.+.|++++|+..++++.+.. +.+...+..+...|.+.|++++ |+..|+++.+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 55443222233333344445555555555555555555443 3344455555555555555553 555555555443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...|+++.+.++. +...+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~ 357 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRY 357 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 3345555555556666666666666666555542 223444555555555666666666666655554321 1222233
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+..++...|+.++|+..|+++.+
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455556666666666666554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-18 Score=195.68 Aligned_cols=335 Identities=9% Similarity=0.002 Sum_probs=277.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
....++..+.+.|++++|+.+++..+...+ ....++..++.++...|++++|...|+++....+ .+...+..+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p---~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~ 119 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAK---NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASV 119 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCC---CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 345577888999999999999999998853 3344667777888899999999999999998754 378889999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
+.+.|++++|++.|+++.+.... +...+..+...+...| ++++|...++.+...... +...+..+ ..+...|++++
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMD-KELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 99999999999999999975322 5678888899999999 999999999998876443 33334333 34788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHH
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD----ALNMFS 393 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~ 393 (820)
|..+++.+++.....+...+..+...+.+.|++++|+..|+++...... +...+..+...|...|++++ |+..|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999999988643344555666778899999999999999999987543 67788889999999999986 899999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 394 EMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN 473 (820)
Q Consensus 394 ~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 473 (820)
+..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..+|.+.|++++|...|+++... .|+
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~ 350 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGV 350 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc
Confidence 998874 4567789999999999999999999999998875 556778888999999999999999999999876 355
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 474 L-LTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 474 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
. ..+..+..++...|+.++|...|++..+..+
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 4 3344567788999999999999999988643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.8e-18 Score=196.41 Aligned_cols=412 Identities=13% Similarity=0.026 Sum_probs=307.4
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (820)
..++......+......|+.++|+++|..+.... +....++..++.++...|++++|..+|+++++.. +.+...+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~---~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 87 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM---QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQR 87 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3455566667777888999999999999887642 3444568889999999999999999999998864 33677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
.++.++...|++++|+..++++.+.... +.. +..+...+...| +.++|+..++++++.... +...+..+..++...
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g-~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~ 163 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAG-RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 8999999999999999999999875322 455 888888888899 999999999999987444 556666778888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHchhC-CCCCCHH-HH----
Q 003433 313 GLWEAARNLFNEMVHRGIDQDI------FTYNTLLDAIC-----KGAQM---DLAFEIMAEMPAK-NISPNVV-TY---- 372 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~---- 372 (820)
|..+.|++.++.+.. .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~ 240 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR 240 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence 999999988876654 1221 11222233222 22334 7788888888753 1122221 11
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNALLG 447 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~ 447 (820)
...+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|+.+|+++.+.. +.+ ...+..+..
T Consensus 241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHH
Confidence 11134456779999999999999887522 322 22335778999999999999999987643 111 345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADC-----------VSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
++.+.|++++|..+++.+.+.. ..|+ ...+..+...+...|++++|+++++++....+. +...+.
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~ 397 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRI 397 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 8899999999999999988752 1123 234566778888999999999999999887644 688889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhh
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANL 580 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~ 580 (820)
.++..+...|++++|++.+++.++. .||. ..+..++..+.+.|++++|...++++++..|++..+
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999884 5664 466777778889999999999999999998887644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-17 Score=192.88 Aligned_cols=406 Identities=12% Similarity=0.062 Sum_probs=213.9
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
...| +.++|++++.+..... ..+...+..+...+.+.|++++|..+|++.++.. +.+...+..++.++...|++++|
T Consensus 26 ~~~g-~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 26 LWAG-QDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHcC-CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3344 4455555554444311 2233334444444555555555555555544431 22233444444445555555555
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+..++++.+.... +.. +..+..++...|+.++|+..++++.+.. +-+...+..+..++...|..++|+..++.+..
T Consensus 103 ~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 103 LVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 5555554443211 223 4444445555555555555555554442 22333333444444444555555554443332
Q ss_pred CCCCCH------HHHHHHHHHH-----HhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHH
Q 003433 434 GIRKDA------VTYNALLGGY-----GKQGKY---DEVRRMFEQMKAD-CVSPNLL-TY----STLIDVYSKGGLYKEA 493 (820)
Q Consensus 434 ~~~~~~------~~~~~li~~~-----~~~g~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~li~~~~~~g~~~~A 493 (820)
.|+. .....++..+ ...+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|
T Consensus 179 --~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 179 --TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred --CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 1110 0111111111 122233 6677777777643 1122211 11 1112334456788888
Q ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 494 MQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP---NVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 494 ~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..... ....+..|..++.+.|++++|+..+++
T Consensus 257 ~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 8888887776532 222 11224667788888888888888876542111 123455566667777777777776666
Q ss_pred HhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCH---H
Q 003433 570 DLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV---V 646 (820)
Q Consensus 570 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~---~ 646 (820)
+....|....+ +. ...-.||. .
T Consensus 336 ~~~~~P~~~~~----------------------------------------------------~~---~~~~~p~~~~~~ 360 (765)
T PRK10049 336 TINNSPPFLRL----------------------------------------------------YG---SPTSIPNDDWLQ 360 (765)
T ss_pred HhhcCCceEee----------------------------------------------------cC---CCCCCCCchHHH
Confidence 55544432100 00 00012332 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
.+..++.++...|++++|++++++++...|.+..+...+...+ ..|+.++|++.++++++++|++ ...+..++.++.+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~ 439 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHH
Confidence 3455666777778888888888888877777766666555544 4677788888888888888854 5567777778888
Q ss_pred cCchHHHHHHHHHhhhhhhh
Q 003433 726 FGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~~~~~ 745 (820)
.|++++|+++++.+.++...
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 88888888888777665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-15 Score=174.80 Aligned_cols=436 Identities=11% Similarity=0.059 Sum_probs=290.9
Q ss_pred HhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHH
Q 003433 133 TAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLA 212 (820)
Q Consensus 133 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 212 (820)
...+....++..+.+.....+..+-....++..+...|+.++|+..+++++.. .+........++..+...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444444444444444444433222226666666777777777777777622 122223333445677777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 213 KNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
+++|+++++..+. +..++..++..|...++.++|++.++++... .|+...+..++..+...+ +..+|++.++++++
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~-~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD-RNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 7777777776543 4666667777777777777777777777653 355555533333333344 44457777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHH-----HhcCC---HHHHHHHHH
Q 003433 293 NGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY------NTLLDAI-----CKGAQ---MDLAFEIMA 358 (820)
Q Consensus 293 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~------~~ll~~~-----~~~g~---~~~A~~~~~ 358 (820)
.... +...+..+..++.+.|-...|.++..+-.+. +.+....+ ..+++.- ....+ .+.|+.-++
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 6322 5566666777777777777777665543321 11111000 0111000 01112 344555555
Q ss_pred HchhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 359 EMPAK-NISPNV-VTY----STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 359 ~m~~~-g~~p~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
.+... +..|.. ..| .-.+-++...|++.++++.|+.|...+.+.-..+-..+.++|...++.++|+.+|+.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 55442 111321 112 234567788999999999999999888665667888999999999999999999999865
Q ss_pred CC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHHHhcCCHHHH
Q 003433 433 SG-----IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-------------VSPNL-LTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 433 ~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A 493 (820)
.. ..++......|..+|...+++++|..+++++.+.. ..||- ..+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 43 12344556789999999999999999999998731 11222 2334567778899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.+.++++....+. |...+..+.+.+...|.+.+|+..++.+... .|+. .+....+.++...|++++|..+....++
T Consensus 436 e~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9999999887754 8999999999999999999999999777664 5554 4777888889999999999999999999
Q ss_pred hhhhhhhh
Q 003433 573 KQKESANL 580 (820)
Q Consensus 573 ~~~~~~~~ 580 (820)
..|+...+
T Consensus 513 ~~Pe~~~~ 520 (822)
T PRK14574 513 RSPEDIPS 520 (822)
T ss_pred hCCCchhH
Confidence 99988644
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-15 Score=170.05 Aligned_cols=472 Identities=13% Similarity=0.093 Sum_probs=274.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.++....-+-...+.|+++.|++.|+++++..+..+ ..++ .++..++..|+.++|+.++++..... .........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~--~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS--GQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch--hhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHH
Confidence 344444445556677888888888888777642221 1122 66777777788888888888777321 2234444445
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+..|...|++++|+++|+++.+.... +...+..++..+.+.+ +.++|++.++++... .|+...+..++..+...++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG-RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcch
Confidence 66777778888888888888775433 4555556666777777 777888877777765 4455555444444444555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
..+|++.++++.+.. +.+...+..++..+.+.|-...|+++.++-... + +...+.- + +.+.|.+..+-
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~-l-------~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQ-L-------ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHH-H-------HHHHHHHHHhh
Confidence 655777777777764 345666677777777777777777776654322 0 1111111 1 01112111111
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 395 MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS-G-IRKDAVTY----NALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 395 m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
+..+... - -. +.--.+.|+.-++.+... + .++....| .-.+-++...|++.++++.|+.|...
T Consensus 253 ----a~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 253 ----AVLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred ----ccccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 1111000 0 00 001234455555554431 1 12221111 22344667778888888888888777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+.+.-..+-..+.++|...++.++|..+|+.+.... ..++......|.-+|...+++++|..+++++.+. .|-
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~ 399 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY 399 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc
Confidence 654344566677888888888888888888876532 1223444567777888888888888888888763 221
Q ss_pred HH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhh
Q 003433 544 VV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRC 622 (820)
Q Consensus 544 ~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (820)
.. .|.. ..-.-..++.++... .+.. ..-
T Consensus 400 ~~~~~~~--~~~~pn~d~~~~~~l----------------------------------~a~~---------------~~~ 428 (822)
T PRK14574 400 QVGVYGL--PGKEPNDDWIEGQTL----------------------------------LVQS---------------LVA 428 (822)
T ss_pred EEeccCC--CCCCCCccHHHHHHH----------------------------------HHHH---------------HHH
Confidence 00 0000 000000111111000 0000 011
Q ss_pred hhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSL 700 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~ 700 (820)
.++..+|.+.+++++. ..| |......+.+.+...|...+|++.++.+...+|.+..+..+..... ..++|.+|+.+
T Consensus 429 ~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2355667777777766 445 5666778888888888888888888887777888777665554433 56788888888
Q ss_pred HHHHhhcCCCcc
Q 003433 701 FDEVKLMDSSTA 712 (820)
Q Consensus 701 ~~~~~~~~~~~~ 712 (820)
.+++++..|++.
T Consensus 507 ~~~l~~~~Pe~~ 518 (822)
T PRK14574 507 TDDVISRSPEDI 518 (822)
T ss_pred HHHHHhhCCCch
Confidence 888888888663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-13 Score=149.09 Aligned_cols=565 Identities=15% Similarity=0.109 Sum_probs=353.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
+..+..+|++++|.+++..+++++ |.+...|..|+.+|-..|+.+++...+-.+....+. |...|..+.....+.|
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd---p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD---PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcc
Confidence 344555699999999999999996 444568999999999999999999988888776544 7799999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhCCCHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL----LAVCSRGGLWEAA 318 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~g~~~~A 318 (820)
.+++|.-.|.+.++.... +...+---...|.+.| +...|...|.++.+.....|..-+..+ +..+...++-+.|
T Consensus 222 ~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G-~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS-NWELIYERSSLYQKTG-DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999986432 5555555677788899 999999999999987543343333333 4556677777999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC---------------------------CCHH
Q 003433 319 RNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS---------------------------PNVV 370 (820)
Q Consensus 319 ~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------p~~~ 370 (820)
.+.++.....+ -..+...++.++..|.+..+++.|......+...... ++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 99998887732 2345667889999999999999999888777652222 2222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
.+. ++-++.+....+....+...+.+.. ..-+...|.-+.++|.+.|++.+|+.+|..+.......+...|--+..+
T Consensus 380 v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 211 2223344444444444444444444 3335567889999999999999999999999877656678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ--------AGLKADVVLYSALIDALC 520 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~li~~~~ 520 (820)
|...|.+++|.+.|+..+... +-+...-..|...|.+.|+.++|.+.+..+.. .+..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998863 44566677888899999999999999998653 223344455555677788
Q ss_pred HcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccC--chhhhh
Q 003433 521 KNGLVESAVSLLDEMTKEG-----IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQD--DKDVQE 593 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~ 593 (820)
+.|+.++=+.+-..|+... +.|+..--.....+-...+...+-......+................+ ....+.
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 8899888766666665421 111111111111111111111111111111111110000000000000 000000
Q ss_pred hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC--CCCH-H-H-HHHHHHHHhccCCHHHHHHHH
Q 003433 594 AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI--KPNV-V-T-FSAILNACSRCNSFEDASMLL 668 (820)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~--~Pd~-~-~-~~~ll~a~~~~g~~~eA~~~~ 668 (820)
.+.+.+.-.+.+.++.. .....+.+++|+.+...+....+ .++. . . =...+.++...+++.+|..++
T Consensus 618 ~~Lsiddwfel~~e~i~--------~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELIL--------SLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred ccCcHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 00111111111111110 01223467788888877765431 2222 1 1 234556677889999999999
Q ss_pred HHHhhc-----CCchhHHHHHHHhcc--ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 669 EELRLF-----DNQVYGVAHGLLMGY--RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
..|... ++--...++ +.+.+ ..++-.-=...+..+...++.+.+..+...|..+...|.+.-|..++..+-.
T Consensus 690 R~~i~~~~~~~~~~q~~l~n-~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWN-LDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 988754 222111111 11111 1111111222333344445544455556667777888888888888766544
Q ss_pred hhh
Q 003433 742 RQV 744 (820)
Q Consensus 742 ~~~ 744 (820)
.+.
T Consensus 769 ~~p 771 (895)
T KOG2076|consen 769 QNP 771 (895)
T ss_pred hCC
Confidence 443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=157.54 Aligned_cols=468 Identities=13% Similarity=0.090 Sum_probs=305.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSAL 234 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 234 (820)
...|...|..+..+.+|+..|+-+++....+ ....+-..+.+.+.+.+++.+|++.|+-++..-+..+ ....+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~-nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFP-NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccC-CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3446777777888999999999888765433 3334555688899999999999999998887533222 3456677
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH--------HHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT--------FNSLL 306 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~--------~~~ll 306 (820)
...+.+.|++++|+..|+.+.+. .||..+-..|+-++...| +-++..+.|.+|+..-..+|..- -..|+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 77789999999999999998874 488776666666666677 88999999999986533333221 11222
Q ss_pred HHHHhCCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 307 AVCSRGGL-----------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 307 ~~~~~~g~-----------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
.-..+... .++++-.-.+++.--+.|+- . . -.+-+++.++.-.-..+..+ .-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f------a-----~-g~dwcle~lk~s~~~~la~d--lei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF------A-----A-GCDWCLESLKASQHAELAID--LEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch------h-----c-ccHHHHHHHHHhhhhhhhhh--hhhhH
Confidence 22222111 11111111111111111110 0 0 11223333332211100001 11122
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK--LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
..-|.++|+++.|+++++-+.+.+-+.-...-+.|-..+.- -.++..|...-+..+..+ +-+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 34578999999999999988876433333333444333333 235777777777666443 344444444444556689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++|.+.|++.+...-.- ....-.+.-.+-..|++++|+..|-++...- ..++.+...+...|....+...|++++-
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998752111 1222234445778899999999998875432 2377788888999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (820)
+.... +..|..++..|.+.|-+.|+-.+|.+.+-....++|.+.....++....+.
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid----------------------- 638 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID----------------------- 638 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----------------------
Confidence 87764 555777999999999999999999998888888877664333332221111
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHhhcCCchhHHH
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS-RCNSFEDASMLLEELRLFDNQVYGVA 682 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~-~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (820)
.+-.++|+..|++... ++|+.+-|..|+..|. +.|++++|.++|......-|++...+
T Consensus 639 ---------tqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 639 ---------TQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred ---------hHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHH
Confidence 1234568899998766 8999999998887665 67999999999999887777765544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-13 Score=139.22 Aligned_cols=383 Identities=13% Similarity=0.073 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVF 251 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 251 (820)
...=.+++.++++. .|.+..+|...+. ..+.++|+.++.++.+- ++.+...|.+ |++...++.|..++
T Consensus 362 ~~~K~RVlRKALe~---iP~sv~LWKaAVe----lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvL 429 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH---IPRSVRLWKAAVE----LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHh---CCchHHHHHHHHh----ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHH
Confidence 33344556666655 2444444443332 34445566666666654 3334444443 33445566666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003433 252 NSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDML----RNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (820)
Q Consensus 252 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 327 (820)
++..+. +..+...|.+-...--.+| +.+...++.++-+ ..|+..+..-|..=...|-..|..--+..+....+.
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ng-n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avig 507 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANG-NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIG 507 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHh
Confidence 666552 3335555555444445555 5666655554433 345555555555555555555666555555555555
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 328 RGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV 405 (820)
Q Consensus 328 ~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~ 405 (820)
.|++.. -.+|+.-...|.+.+.++-|+.+|...++.-. -+...|...+..--..|..++-..+|+++...- +-...
T Consensus 508 igvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~ 585 (913)
T KOG0495|consen 508 IGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEI 585 (913)
T ss_pred hccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-Ccchh
Confidence 554322 34555555556666666666666655554422 144455555554455555555555555555441 22333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 485 (820)
.|.....-+-..|++..|+.++....+.. +.+...|-+-+.......+++.|..+|.+.... .|....|.--+....
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLER 662 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHH
Confidence 44444445555555666655555555443 334555555555555555566666665555543 334444443333334
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhh
Q 003433 486 KGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECT 563 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 563 (820)
-.++.++|++++++.++.- |+ ...|..+...+-+.++++.|.+.|..=.+. -|+.. .|..|...=-+.|.+-.|
T Consensus 663 ~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhH
Confidence 4455555555555555431 22 234555555555555555555555544432 33333 444444444555555555
Q ss_pred HHhHHHHhhhhhhh
Q 003433 564 VDDVERDLGKQKES 577 (820)
Q Consensus 564 ~~~~~~~l~~~~~~ 577 (820)
..+++++...+|.+
T Consensus 739 R~ildrarlkNPk~ 752 (913)
T KOG0495|consen 739 RSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHHHhcCCCc
Confidence 55555555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-12 Score=141.77 Aligned_cols=358 Identities=14% Similarity=0.150 Sum_probs=254.9
Q ss_pred ccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHH
Q 003433 135 FARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKN 214 (820)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 214 (820)
.++...+..-+.+.+...+..+..|..|...|-++|+.+++...+-.+...+ +.+...|..+.....++|.++.|+-
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~---p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN---PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3444444444445566666778899999999999999999999988777765 3333689999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHcCCCCHHHHHHHHHHH
Q 003433 215 IFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVT----YNAVIDACGKGGVDFKHVVEIFDDM 290 (820)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~g~~~~~A~~~~~~m 290 (820)
.|.++++..+. +....---+..|-+.|+...|.+.|.++......-|..- --.++..+...+ +-+.|.+.++..
T Consensus 229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 99999998644 556666678899999999999999999998543222222 233455566777 668899988888
Q ss_pred HHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 003433 291 LRNG-VQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG---------------------------IDQDIFTYNTLLD 342 (820)
Q Consensus 291 ~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g---------------------------~~~~~~~~~~ll~ 342 (820)
...+ -..+...++.++..+.+...++.|......+.... +..+..+ -.++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 7632 22355678888888999999999988887776621 1222222 12233
Q ss_pred HHHhcCCHHHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 343 AICKGAQMDLAFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
++......+...-+.....+.. +.-+...|.-+.++|.+.|++.+|+.+|..+......-+...|-.+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 3344444444444444444443 33355678888899999999999999999988875555677888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD--------CVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
++|.+.|+..+... +.+...-..|...+.+.|+.++|.+.+..+..- +..|+........+.|.+.|+.++
T Consensus 466 e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 466 EEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999888765 455666777888889999999999998886521 233344444445566667777665
Q ss_pred HHHHHHH
Q 003433 493 AMQIFRE 499 (820)
Q Consensus 493 A~~~~~~ 499 (820)
=+.+-..
T Consensus 545 fi~t~~~ 551 (895)
T KOG2076|consen 545 FINTAST 551 (895)
T ss_pred HHHHHHH
Confidence 4443333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-12 Score=130.40 Aligned_cols=522 Identities=11% Similarity=0.062 Sum_probs=386.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+.|.|..-++ ....+.|..+...+++.. |....+|..-+.. ..+...=.++++++++. ++.++..|-..
T Consensus 318 SeDvWLeaiR----Lhp~d~aK~vvA~Avr~~---P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA 386 (913)
T KOG0495|consen 318 SEDVWLEAIR----LHPPDVAKTVVANAVRFL---PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA 386 (913)
T ss_pred hHHHHHHHHh----cCChHHHHHHHHHHHHhC---CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH
Confidence 4556655443 456777888888888773 4444455443332 23445556788888876 55578788765
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
+. ....++|.-++.+..+. +.-+...|. ++.+.. .++.|..++.+..+. ++.+..+|.+-...--..|+
T Consensus 387 Ve----lE~~~darilL~rAvec-cp~s~dLwl----AlarLe-tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 387 VE----LEEPEDARILLERAVEC-CPQSMDLWL----ALARLE-TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred Hh----ccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHH-HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCC
Confidence 54 46677799999998873 222444554 445555 789999999999876 66688888888888888999
Q ss_pred HHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHH
Q 003433 315 WEAARNLFNEMV----HRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 315 ~~~A~~~~~~~~----~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 388 (820)
.+...+++++-+ ..|+..+-..|-.=...+-+.|..-.+..+....+..|+.-. ..||..-...|.+.+.++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 999999887654 458888999999999999999999999999999888776532 35888889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..+|...++.- +-+...|...+..--..|..++-..+|+++...- +.....|.....-+...|+...|+.++.+..+.
T Consensus 536 rAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~ 613 (913)
T KOG0495|consen 536 RAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA 613 (913)
T ss_pred HHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 99999988764 5567788888877778899999999999998754 566788888888899999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HH
Q 003433 469 CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TY 547 (820)
Q Consensus 469 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~ 547 (820)
. +.+...|..-+........++.|..+|.+.... .++...|.--+....-.++.++|++++++.++. .|+.. .|
T Consensus 614 ~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~ 688 (913)
T KOG0495|consen 614 N-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLW 688 (913)
T ss_pred C-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHH
Confidence 4 446778888899999999999999999998775 478888888888888899999999999999984 77876 88
Q ss_pred HHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHH
Q 003433 548 NSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEIL 627 (820)
Q Consensus 548 ~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (820)
..+.+.+-+.++++.|...|...++.-|....+ |-.+.++-. +.|. .-
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL-----------------WllLakleE-----k~~~----------~~ 736 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL-----------------WLLLAKLEE-----KDGQ----------LV 736 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccCCCCchH-----------------HHHHHHHHH-----Hhcc----------hh
Confidence 889999999999999999999999887754311 222222211 2222 23
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHh
Q 003433 628 CILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (820)
Q Consensus 628 ~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~ 705 (820)
.|..+|++... -+| |...|...+.+=.+.|+.+.|..+..++++--|.+...+...+... +.+.--++...+++
T Consensus 737 rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-- 812 (913)
T KOG0495|consen 737 RARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-- 812 (913)
T ss_pred hHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh--
Confidence 47778888776 345 5667999999999999999999999988876665543333322221 11111122222222
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+++++.+.-+.+.+++...+++.|++.|..+.....
T Consensus 813 ---ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 813 ---CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred ---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 123344566667777777777777777766665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=137.03 Aligned_cols=408 Identities=16% Similarity=0.129 Sum_probs=284.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccC--ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKN--DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
+...+.+.+.+.+|+++|+.++.+-+... ....+.+.+...+.+.|++++|+..|+...+. .|+..+-..|+-++.
T Consensus 243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f 320 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF 320 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe
Confidence 34557788899999999999988743322 23456777888899999999999999999886 467666666666677
Q ss_pred hcCChhHHHHHHHHHHhCCC------------CCCHHHHHHHH-----HHHHcCC-CCHHHHHHHHHHHHHCCCCCCHH-
Q 003433 240 RSGYCQEAISVFNSMKRYNL------------KPNLVTYNAVI-----DACGKGG-VDFKHVVEIFDDMLRNGVQPDRI- 300 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~------------~p~~~~~~~ll-----~~~~~~g-~~~~~A~~~~~~m~~~g~~p~~~- 300 (820)
.-|+-++..+.|.+|+.... .|+....|..| ..+-+.+ .+-++++-.--+++.--+.|+-.
T Consensus 321 ~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~ 400 (840)
T KOG2003|consen 321 AIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA 400 (840)
T ss_pred ecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc
Confidence 78999999999999976432 23333333222 2222221 01222222222222222223210
Q ss_pred ----H--------HHH--------HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHH
Q 003433 301 ----T--------FNS--------LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK--GAQMDLAFEIMA 358 (820)
Q Consensus 301 ----~--------~~~--------ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~ 358 (820)
. +.. -..-+.+.|+++.|++++.-+.+..-..-...-|.|-..+.- -.++..|.+.-+
T Consensus 401 g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 0 111 122467889999999999888776433223333444333333 335677777766
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
..+..+ .-+....+.-.+.-..+|++++|.+.+++.+..+-.-....|| +.-.+-..|++++|++.|-++...- ..+
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn 557 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNN 557 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-Hhh
Confidence 655431 1133334444445566899999999999998764222223333 3446678899999999998774321 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
..+...+...|....+..+|++++.+.... ++.|....+-|...|-+.|+-..|.+.+-+--+. ++.+..+...|..-
T Consensus 558 ~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 558 AEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 778888999999999999999999887765 6778899999999999999999999887665443 45588888889999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCchhhhHHhHHHHhhhhhhhh
Q 003433 519 LCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|....-+++|+..|++..- +.|+..-|..++..| .+.|+++.|.+++.+....+|++.
T Consensus 636 yidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedl 694 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDL 694 (840)
T ss_pred HHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccch
Confidence 9999999999999999876 789999999888755 678999999999999998888764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-12 Score=128.64 Aligned_cols=392 Identities=15% Similarity=0.206 Sum_probs=243.9
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 219 (820)
+++.+++... .+.+++.+..+|.++++-...+.|.++++......+. .+..+++.+|.+-. +....++..+|
T Consensus 193 G~vAdL~~E~--~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S----~~~~K~Lv~EM 264 (625)
T KOG4422|consen 193 GAVADLLFET--LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASS----YSVGKKLVAEM 264 (625)
T ss_pred ccHHHHHHhh--cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHH----hhccHHHHHHH
Confidence 4455554443 3456778888888888888888888888877654322 22346666666544 33347788888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHC-
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQE----AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF-KHVVEIFDDMLRN- 293 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~~A~~~~~~m~~~- 293 (820)
......||..++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+ +. +.|..++.+....
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~-dp~k~as~~i~dI~N~l 343 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES-DPQKVASSWINDIQNSL 343 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC-CchhhhHHHHHHHHHhh
Confidence 888888899999999998888888775 4567778888889999889988888888877 44 3344444444321
Q ss_pred -C--C----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 294 -G--V----QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG----IDQD---IFTYNTLLDAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 294 -g--~----~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~ 359 (820)
| + .-|...|...+..|.+..+.+.|.++..-+.... +.++ .+.|..+....|+....+.-..+|+.
T Consensus 344 tGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 344 TGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred ccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2 2256677788888888888888888877665431 1222 34566777788888888888888888
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 360 MPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (820)
Q Consensus 360 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 439 (820)
|+-.-.-|+..+...++.+..-.|.++-.-+++..++..|...+...... ++..|.+....|+.
T Consensus 424 lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~ee----------------il~~L~~~k~hp~t 487 (625)
T KOG4422|consen 424 LVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREE----------------ILMLLARDKLHPLT 487 (625)
T ss_pred hccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHH----------------HHHHHhcCCCCCCC
Confidence 88776677888888888888888888888888888887764333322222 22233222222221
Q ss_pred HHHHHHHHHHHhc-CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHH---
Q 003433 440 VTYNALLGGYGKQ-GKY-DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYS--- 513 (820)
Q Consensus 440 ~~~~~li~~~~~~-g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~--- 513 (820)
..-..+-....++ -++ +....--.+|... .-.....+.+...+.+.|+.++|.++|..+.+.+- .|-....|
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 1111111111111 011 1112222334443 23444556666667777888888888777754432 22333334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
-+++.-.+.+....|..+++-|...+...-...-+.+...|.-+.
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNq 610 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQ 610 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCH
Confidence 445555667777778888887766543222223444455554433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-11 Score=122.96 Aligned_cols=399 Identities=11% Similarity=0.062 Sum_probs=273.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.|..-.+-=..+++++.|+++|++++..+. .+..++..-+.+-.++..+..|+.+++.++..- +.-...|...+-+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHH
Confidence 444444444556788889999999998753 334588888899999999999999999998863 3334567777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
--..|++..|.++|++-.+ ..|+...|++.|+.-.+-. ..+.|..+|++.+- +.|++.+|--..+.-.+.|.+..
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk-eieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK-EIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 7788999999999999886 5799999999999988888 89999999999886 46899999888888889999999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHH--
Q 003433 318 ARNLFNEMVHR-GI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN--VVTYSTMIDGYAKAGRLDDALNM-- 391 (820)
Q Consensus 318 A~~~~~~~~~~-g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~-- 391 (820)
|..+|+.+++. |- ..+...+++....-.++..++.|.-+|+-.++.-.+ + ...|......--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk-~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK-GRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999988774 21 112334555555555677888888888776654211 2 23344444333344543332222
Q ss_pred ------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH--------HHHHHhcCCH
Q 003433 392 ------FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA--VTYNAL--------LGGYGKQGKY 455 (820)
Q Consensus 392 ------~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l--------i~~~~~~g~~ 455 (820)
++.++..+ +-|-.+|-..+..-...|+.+...++|++.+..- +|-. ..|.-. +-.-....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33344433 5566677777777777788888888888877543 3321 111111 1111345777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYS----KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (820)
+.+.++|+..++. ++...+|+.-+--+|+ ++.++..|.+++...+ |..|-..++...|..-.+.++++...++
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 7788888877764 4555566665544444 5667777887777665 3457777777777777788888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 532 LDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 532 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
|++.++.+.. |..+|......=...|+.+.|..+++-++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 8888775322 455777666666666777766666555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-12 Score=127.55 Aligned_cols=403 Identities=14% Similarity=0.178 Sum_probs=281.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH--HHhcCChHHH-HHHHHHHHHcC-------------
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI--LGRLGKVDLA-KNIFETALNEG------------- 223 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~------------- 223 (820)
+.+++ +...|...++.-+|+.|.+.+....+ .+-..|++. |....++--| ++.|-.|.+.|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~--kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSE--KVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCH--HHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 33444 44578888888899988887643332 233333322 2222222111 22232222211
Q ss_pred ------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 224 ------YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 224 ------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
.+.+..++..||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-. +....++..+|+...+.|
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-----~~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-----YSVGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-----hhccHHHHHHHHHhhcCC
Confidence 233667899999999999999999999999988777889999999998763 344478899999999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHchh----CCCC--
Q 003433 298 DRITFNSLLAVCSRGGLWEAA----RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPA----KNIS-- 366 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~----~g~~-- 366 (820)
|..|||+++.+..+.|+++.| .+++.+|.+.|++|...+|..+|..+++.++..+ |..++.++.. +.++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 999999999999999987764 5678889999999999999999999999888754 5555544432 2222
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 367 --PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG----IGLD---RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 367 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~d---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
.|..-|..-++.|.+..+.+-|.++..-+.... +.++ ..-|..+....|+....+.-...|+.|+-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245566777888889999999988876654321 2233 2346777888899999999999999998766678
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HHH-----HHHHH------
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-L--------YKE-----AMQIF------ 497 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~------ 497 (820)
+..+...++.+..-.|.++-..+++..++..|...+.....-++..+++.. + +.. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999988875555544444444555433 1 111 11111
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHH---HHHHHHhhcCchhhhHHhHHHHhh
Q 003433 498 -REFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYN---SIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 498 -~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.+|.+ .+......+.+.-.+.+.|+.++|.++|....+.+- .|-....+ .+++.-.+..+.-+|+..++-++.
T Consensus 512 ~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 512 PIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 12222 234566677788888999999999999999965532 23333344 556666666777777776655544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-13 Score=136.74 Aligned_cols=220 Identities=12% Similarity=0.066 Sum_probs=139.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
.-.|+.-.|..-|+..+..... +...|.-+..+|....+.++..+.|++..+.++. |..+|..-...+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 3455666666666666654321 1122555555666666666666666666665543 5555555555555566666666
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHH
Q 003433 530 SLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQL 608 (820)
Q Consensus 530 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (820)
.-|++.+.. .|+.. .|..+.-+..+.++++
T Consensus 415 aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~----------------------------------------------- 445 (606)
T KOG0547|consen 415 ADFQKAISL--DPENAYAYIQLCCALYRQHKIA----------------------------------------------- 445 (606)
T ss_pred HHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 666666652 33322 4444444444444444
Q ss_pred HHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH--
Q 003433 609 VAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-- 685 (820)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-- 685 (820)
++...|++... --|+ ...|+....++..++++++|.+.|+.+.++.|...++..+.
T Consensus 446 -------------------~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 446 -------------------ESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred -------------------HHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 34445555544 2233 34566666777788899999999999887777644433221
Q ss_pred -----Hhccc-cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 686 -----LMGYR-DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 686 -----~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
++..+ .+++..|+.+.++++++||.. ...|.+|+.+..+.|+.++|+++|+++...
T Consensus 505 lV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 505 LVHKALLVLQWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hhhhhHhhhchhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12222 578889999999999999976 455999999999999999999999887554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-12 Score=125.87 Aligned_cols=360 Identities=12% Similarity=0.061 Sum_probs=246.8
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
..+...+...+..+.+.|..+.|+..|...+.. .+..=.+|..|.... .+.+.+..+...+.. +-....--.+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l~~~l~~---~~h~M~~~F~ 233 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSILVVGLPS---DMHWMKKFFL 233 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHHHhcCcc---cchHHHHHHH
Confidence 445566777778888889999999998888764 233444454444432 223322222211111 0111112234
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhc
Q 003433 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI--DQDIFTYNTLLDAICKG 347 (820)
Q Consensus 270 l~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~ 347 (820)
..++.... +.+++++-.+.....|+.-+...-+....+.....++|+|+.+|+++.+... -.|..+|+.++-.-..+
T Consensus 234 ~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 234 KKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 45555666 6788888888888888776666666666667788899999999999988732 12566666655433322
Q ss_pred CCHH-HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 348 AQMD-LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 348 g~~~-~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.++. .|..++. +.+ --..|.-.+.+.|.-.++.++|+..|++.++.+ +-....|+.+..-|....+...|++.
T Consensus 313 skLs~LA~~v~~-idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN-IDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH-hcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2221 1222222 111 134566777888888889999999999988875 44567788888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
++..++.. +.|-..|..|.++|.-.+...=|+-.|++.... .+-|...|.+|..+|.+.++.++|++.|......|-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 99988776 678888999999999999999999999988775 255788899999999999999999999999888763
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH--HHHHHHHHHhhcCchhhhHHh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNVV--TYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~--~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.+...+..|...|-+.++.++|...|++-++. |..-+.. +..-|..-+.+.+++++|-..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 25678888999999999999998888877652 4333322 223344556777787777543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-10 Score=111.94 Aligned_cols=496 Identities=13% Similarity=0.091 Sum_probs=349.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+..-+..--.++++..|+.+|+.++..+. .+...|...+.+-.++..+..|..++++....=+..|. .|.-.+..--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHH
Confidence 444555556678899999999999998764 48889999999999999999999999999874322233 3333343444
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
..| ++..|.++|++... ..|+...|.+.++.-.+...++.|..++++.+-. .|++.+|--....-.+.|+...|.
T Consensus 153 ~Lg-Ni~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLG-NIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred Hhc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 567 89999999999987 5899999999999999999999999999999874 589999999999999999999999
Q ss_pred HHHHHchhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCH---HHHHH--
Q 003433 355 EIMAEMPAK-NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRF---EEALL-- 425 (820)
Q Consensus 355 ~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~---~~A~~-- 425 (820)
.+|+...+. |- .-+...+.+....-.++..++.|.-+|+-.+..= +.+ ...|..+...--+-|+. ++++-
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999987753 10 0122344444444556778899999998887652 223 34555555544455654 33332
Q ss_pred ---HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH--------HHhcCCHHH
Q 003433 426 ---VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDV--------YSKGGLYKE 492 (820)
Q Consensus 426 ---~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~--------~~~~g~~~~ 492 (820)
-|+.+++.+ +-|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|...|.. -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 244555544 567888888888888999999999999999876 455321 22222211 124678999
Q ss_pred HHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHH
Q 003433 493 AMQIFREFKQAGLKADVVLY----SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 568 (820)
+.++|+..++. ++....|+ -.......++.++..|.+++..++ |.-|..-+|...|..=.+.++++....+++
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999884 22334444 444455568889999999999887 568999999999999999999999999999
Q ss_pred HHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC-CCCHHH
Q 003433 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI-KPNVVT 647 (820)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~-~Pd~~~ 647 (820)
+-++..|++. ..|.....+-.. .|+.+.|..+|.-.++... +--...
T Consensus 462 kfle~~Pe~c-----------------~~W~kyaElE~~---------------LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 462 KFLEFSPENC-----------------YAWSKYAELETS---------------LGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHHhcChHhh-----------------HHHHHHHHHHHH---------------hhhHHHHHHHHHHHhcCcccccHHHH
Confidence 9999988763 233333332222 2377889999998876442 223555
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHh---cc---ccc-----------hHHHHHHHHHHHhh----
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLM---GY---RDN-----------IWVQALSLFDEVKL---- 706 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~-----------~~~~A~~~~~~~~~---- 706 (820)
|-+.|+-=...|.++.|+.+|+.++...+..- ++..+.. +. ..+ +...|..+|+++..
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 77777777789999999999999997665433 4333321 11 122 56678888888754
Q ss_pred cCCCcc-hhHHHHHHHHHhhcCchHHHHHHH
Q 003433 707 MDSSTA-SAFYNALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 707 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 736 (820)
.+|+.. ...+...-++-...|.-.+-..|-
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~ 619 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQ 619 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 233211 122333333444456555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-11 Score=119.18 Aligned_cols=331 Identities=11% Similarity=0.059 Sum_probs=237.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT- 301 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~- 301 (820)
+...|...+...+..+.+.|....|++.|......- .-.-.+|..|...+. +.+.+ ...... ...|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit----~~e~~----~~l~~~-l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT----DIEIL----SILVVG-LPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc----hHHHH----HHHHhc-CcccchHH
Confidence 345577777777778888999999999999887531 123444444444332 22222 222221 1212111
Q ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC--CCHHHHHHHHHH
Q 003433 302 -FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PNVVTYSTMIDG 378 (820)
Q Consensus 302 -~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~ 378 (820)
=-.+..++-.....+++.+-.+.....|++.+...-+-...+.....++|.|+.+|+++.+..+- -|..+|+.++-
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY- 307 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY- 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH-
Confidence 12244566666688888888888888888877777777777778888999999999999876311 15667777653
Q ss_pred HHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 379 YAKAGRLDDALNMFSEMK-FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.+..+-. +..+.+-. +.+ +--..|...+.+.|+-.++.++|...|++.++.+ +.....|+.+..-|....+...
T Consensus 308 -v~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 -VKNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred -HHhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3333222 12222211 111 3345678888889999999999999999998876 5667888888899999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|.+-++..++.+ +.|...|-.|.++|.-.+...-|+-.|++..+..+. |...|.+|+.+|.+.++.++|++.|++...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999988874 668889999999999999999999999999887543 889999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 538 EGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 538 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.|-. +...+..|.+.+-+.++.++|.+.+++-++
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6532 556888888888888888888776655443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-09 Score=111.37 Aligned_cols=530 Identities=13% Similarity=0.164 Sum_probs=305.2
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
-|..|..-+.-+..+|+...-+..|++++..-+... ...+|...+......|-.+.+..+|++.++. ++..-+-.
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtq-H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQ-HDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHh-hccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 367888888999999999999999999987643222 2357888888888889999999999999885 44557888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHCCCCCC--HHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYN------LKPNLVTYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPD--RITFN 303 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~g~~~~---~A~~~~~~m~~~g~~p~--~~~~~ 303 (820)
|..+++.+++++|.+.+....... .+.+-..|.-+-+...++. +.- ....+++.++.. -+| ...|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p-~~~~slnvdaiiR~gi~r--ftDq~g~Lw~ 252 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNP-DKVQSLNVDAIIRGGIRR--FTDQLGFLWC 252 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCc-chhcccCHHHHHHhhccc--CcHHHHHHHH
Confidence 999999999999999999886431 2335556777777766654 222 222334444332 234 34688
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHch
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA----------------------QMDLAFEIMAEMP 361 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----------------------~~~~A~~~~~~m~ 361 (820)
.|.+.|.+.|.++.|..+|++.+..- .++.-++.+.+.|++-. +++..+..|+.+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm 330 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM 330 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999988752 23344444444444321 1223333444433
Q ss_pred hCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHH
Q 003433 362 AKN-----------ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEAL 424 (820)
Q Consensus 362 ~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d------~~~~~~li~~~~~~g~~~~A~ 424 (820)
..+ -.-++..|..-+.. ..|+..+-+..+.++++.- .|. ...|..+.+.|-..|+++.|.
T Consensus 331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 331 NRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred hccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 321 01133344433332 3456666777777766541 221 245777778888888888888
Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHH
Q 003433 425 LVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-----------------NLLTYSTLIDVY 484 (820)
Q Consensus 425 ~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------------~~~~~~~li~~~ 484 (820)
.+|++..+..++-- ..+|.....+-.+..+++.|+++.+.....--.| +...|+..++.-
T Consensus 408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dle 487 (835)
T KOG2047|consen 408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLE 487 (835)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHH
Confidence 88888776543321 3456666666667777888888777665421110 122344444444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh---cCch
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGR---SATT 560 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~---~g~~ 560 (820)
-..|-++.-..+++++++..+. ++.........+-.+.-++++.++|++-+..=-.|+.. .|++.+.-+.+ .-+.
T Consensus 488 Es~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~kl 566 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKL 566 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCH
Confidence 4556667777777777665543 33322223333444555677777777655442234443 66665554422 2356
Q ss_pred hhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCC
Q 003433 561 ECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK 640 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~ 640 (820)
+.|..+++++++.-|.. ....+.-.|+++..+ .| ....|+.++++.-. +
T Consensus 567 EraRdLFEqaL~~Cpp~-------------------~aKtiyLlYA~lEEe-~G----------Lar~amsiyerat~-~ 615 (835)
T KOG2047|consen 567 ERARDLFEQALDGCPPE-------------------HAKTIYLLYAKLEEE-HG----------LARHAMSIYERATS-A 615 (835)
T ss_pred HHHHHHHHHHHhcCCHH-------------------HHHHHHHHHHHHHHH-hh----------HHHHHHHHHHHHHh-c
Confidence 66777777777643311 112333344444221 12 33346666666433 3
Q ss_pred CCCCHH--HHHHHHHHHh-ccCCHHHHHHHHHHHhhcCCchhHHHHHH-Hh--ccccchHHHHHHHHHHHhh-cCCCcch
Q 003433 641 IKPNVV--TFSAILNACS-RCNSFEDASMLLEELRLFDNQVYGVAHGL-LM--GYRDNIWVQALSLFDEVKL-MDSSTAS 713 (820)
Q Consensus 641 ~~Pd~~--~~~~ll~a~~-~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~A~~~~~~~~~-~~~~~~~ 713 (820)
+++... .|+..|.--. --| +..-+.+|+++.+.=|+.....-.+ +. -.+-|..+.|..++...-+ .+|..+.
T Consensus 616 v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~ 694 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT 694 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence 443322 2443332111 111 2233445555444323222211111 00 1134666667766666544 4666666
Q ss_pred hHHHHHHHHHhhcCchH
Q 003433 714 AFYNALTDMLWHFGQKR 730 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~ 730 (820)
.+|++.-+--.+.|+-+
T Consensus 695 ~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHhcCCHH
Confidence 67777666666677633
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-12 Score=134.74 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003433 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTY--NTLLDAICKGAQMDLA 353 (820)
Q Consensus 276 ~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~--~~ll~~~~~~g~~~~A 353 (820)
.| +++.|.+.+....+..-. ....|........+.|+++.|...+.++.+. .|+...+ ......+...|+++.|
T Consensus 97 eG-d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EG-DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CC-CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 45 677777666655443111 1222222233346677777777777777664 2333222 2335566777777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.+.++++.+.... +......+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777666533 5566667777777777777777777777766533211 1223333333344445555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 2457777888888888888888888888888774 4454222 233334558888888888888877543
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
|...+..+...+.+.|++++|.+.|+++.+ ..|+..++..+..++.+.|+.++|.+++++++..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677788888888888888888888888887 4688888888888888888888888888877654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-11 Score=122.93 Aligned_cols=399 Identities=15% Similarity=0.080 Sum_probs=270.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+-...+.+.++|++++|+++|.+++... ++....|.....+|...|++++..+--.++++.++. -+.++.--..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3345667889999999999999999884 333568999999999999999999988888876422 356777777788
Q ss_pred HhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHh---
Q 003433 239 GRSGYCQEAISVFNSMK-RYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-NG--VQPDRITFNSLLAVCSR--- 311 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-~g--~~p~~~~~~~ll~~~~~--- 311 (820)
-..|++++|+.=..-.- -.|+. |..+--.+=+.+-+ .|..-..+-.+ .+ +-|......+....+..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk------~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK------QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH------HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 88888888754322211 11111 11111111111111 11111222111 11 22333333332222211
Q ss_pred ----------------------CC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHhcCCHHHHH
Q 003433 312 ----------------------GG---LWEAARNLFNEMVHR---GIDQD---------IFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 312 ----------------------~g---~~~~A~~~~~~~~~~---g~~~~---------~~~~~~ll~~~~~~g~~~~A~ 354 (820)
.+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 01 122222222221110 00111 122222233345578999999
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
+-|+..+.....+ ...|--+..+|.+..+-++..+.|.+....+ +-|..+|..-..++.-.+++++|..=|++.++..
T Consensus 347 ~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998875442 2337778888999999999999999999886 6677888888888888999999999999998776
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH
Q 003433 435 IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-----ADV 509 (820)
Q Consensus 435 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~ 509 (820)
+-+...|..+..+..+.+++++++..|++.+.+ ++.-...|+.....+...+++++|.+.|+..++.... .+.
T Consensus 425 -pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 425 -PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 556788888888888999999999999999887 5666889999999999999999999999998864321 122
Q ss_pred HH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 510 VL--YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 510 ~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.. .-.++-.- -.+++..|+.+++++.+. .|... .|.+|...-.+.|++++|+++++++..+..
T Consensus 503 ~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 503 APLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11 12222222 238899999999999984 55544 899999999999999999999998776543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-12 Score=136.24 Aligned_cols=291 Identities=10% Similarity=0.020 Sum_probs=184.4
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
..| +++.|.+.+.+..+.. |+ ...+-....++...|+.+.|.+.+.++.+........+.-.....+...|+++.|
T Consensus 96 ~~g-~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEG-DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCC-CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 345 6777777777666542 33 2333344555666777777777777776543222223344456667777777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH---HHHHcCCHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYN-TVLS---IYAKLGRFEEALLVCKE 429 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~-~li~---~~~~~g~~~~A~~~~~~ 429 (820)
.+.++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776533 5566777777777777777777777777776532 332221 1111 11222333333334444
Q ss_pred HHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 430 MESSGI---RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT---YSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 430 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+.+... +.+...+..++..+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 443321 237777888888888888888888888888775 334331 111222233457778888888887765
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 504 GLKADV--VLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 504 ~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.+. |. ....++...+.+.|++++|.+.|+........||..++..+...+.+.|+.++|.+++++++..
T Consensus 329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 432 44 5667888888888999999998885444335788888888888888889888888888876653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-13 Score=138.47 Aligned_cols=287 Identities=16% Similarity=0.123 Sum_probs=206.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCCHHHHHH
Q 003433 208 KVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL--KPNLVTYNAVIDACGKGGVDFKHVVE 285 (820)
Q Consensus 208 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~~A~~ 285 (820)
+..+|...|+++... ...+..+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+.+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hHHHH
Confidence 457888888885544 333556777788888888888888888888876431 1266777777765532 22333
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 286 IF-DDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 286 ~~-~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
++ +.++.. -+-...+|-++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 32 222322 12357788888888888888888888888888853 2267788888888888888888888888877652
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 365 ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 365 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
.. +-.+|--|...|.+.++++.|+-.|+++.+.. +-+.+....+...+-+.|+.|+|+++|+++...+ +.|+..-.-
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 21 33344556777888888888888888888775 5567777778888888888888888888887766 556666556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
.+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|.-+.+..++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 677777788888888888888775 3445566777778888888888888888877776544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-12 Score=135.56 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=179.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A 283 (820)
...|+++.|++.+.+..+.... ....+-....++.+.|+++.|.++|.+..+....++....-.....+...| +++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~-~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQN-ELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCC-CHHHH
Confidence 4567777777777776664322 233344455666777777777777777765332222223333455566677 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHH
Q 003433 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYN-TLLDAI---CKGAQMDLAFEIMAE 359 (820)
Q Consensus 284 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~-~ll~~~---~~~g~~~~A~~~~~~ 359 (820)
...++.+.+.... +...+..+...+...|++++|.+.+..+.+.+... ...+. .-...+ ...+..+++.+.+.+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7777777776433 55666777777777777777777777777765432 22221 111111 222222222333333
Q ss_pred chhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 360 MPAKNI---SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS---YNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 360 m~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+.+... +.+...+..+...+...|+.++|.+++++..+. .||... .....-.....++.+.+++.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 333211 126677777778888888888888888888776 334331 111112223346777788888777655
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 434 GIRKDA--VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 434 ~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
. +.|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 4455 566778888888888888888888533333467887788888888888888888888887643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-11 Score=130.42 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
+......+...+...|+.++|.+++++..+. .+|.... ++.+....++.+++.+..+...+.. +-|...+..+..
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgr 336 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQ 336 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3444444455555555555555555544442 2232111 1222223355555555555544431 233334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.|.+.+++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|..+|++.+
T Consensus 337 l~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 337 LLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555543 2455555555555555555555555555443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-13 Score=139.37 Aligned_cols=287 Identities=13% Similarity=0.116 Sum_probs=226.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQDIFTYNTLLDAICKGAQM-DLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~ll~~~~~~g~~-~~A~~ 355 (820)
+..+|...|++.... +.-..++...+.++|...+++++|+++|+.+.+.. ...+..+|.+.+.-+-+.=.. -.|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568999999995554 33345777888999999999999999999998763 123577888777655332111 12333
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
+.+.+. -...+|-++.++|.-+++.+.|++.|++.++.+ +-...+|+.+..=+.....+|.|...|+..+...
T Consensus 413 Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 413 LIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 333333 267899999999999999999999999999874 3477899999988999999999999999988533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 515 (820)
+.+-..|.-|.-.|.+.++++.|+-.|++.++.+ +-+.+....+...+.+.|+.++|+++|+++...+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 2334455556778999999999999999999874 456777778888999999999999999999987765 66665667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 516 IDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+..+...+++++|+..++++.+ +.|+.. ++..+...|-+.|+.+.|+..+.-+....|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 7888899999999999999998 466654 78888889999999999998877777766643
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-14 Score=148.87 Aligned_cols=259 Identities=17% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 277 (820)
+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3444555555555555553332221 1223444444444555555555555555555543322 33334444443 3444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 278 VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 278 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
++++|.+++++..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 92 -~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 92 -DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455555555444332 1233444444455555555555555555544321 223444455555555555555555555
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR 436 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 436 (820)
|++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+..|++..+.. +
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 5555544221 34444555555555555555555554444332 2233344455555555555555555555554433 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
.|..+...+..++.+.|+.++|.++..+.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 34555555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-14 Score=146.31 Aligned_cols=259 Identities=19% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
...+.+.|++++|.+++++..... .+.|...|..+.......++++.|++.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 333444444444444443322221 1222333333333444444444444444444443222 23333333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
+++|.+++.+..+. .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 1233333444444444444444444444433211 12334444444444444555555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 464 QMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 464 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+.++.. +.|....+.++..+...|+.+++.++++...+.. ..|...|..+..+|...|+.++|+..|++..+.. ..|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 444431 1123444444444444444444444444443322 1233344444445555555555555555544421 113
Q ss_pred HHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 544 VVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 544 ~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
..+...+.+++.+.|+.++|.++..+++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 3344444445555555555544444433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-10 Score=120.05 Aligned_cols=505 Identities=12% Similarity=0.046 Sum_probs=276.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+...+..+.+-+..+.++.-|+-+-+++.... ..|.+ ..-++.++.-.|++..|..+...-.-. ..|.......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d---~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPAD---IYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHH---HHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 34567777777777888888887777777665 22322 234677787788888887766554222 2467777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
...+.+..++++|..++..... .-+...|..-=.+. .- ..+.+. ++.. +......+-.-...|....+
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~~~--~l-~~n~~~----~~~~--~~~essic~lRgk~y~al~n 156 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDAAN--TL-ELNSAG----EDLM--INLESSICYLRGKVYVALDN 156 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhhhc--ee-ccCccc----cccc--ccchhceeeeeeehhhhhcc
Confidence 8888888888888888873311 11111111000000 00 011111 0000 00011111111223445556
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI----SPNVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
.++|...|.+.+.. |+..+.++...-.. .+-.+.+.|+.+..... .-++.....+.....-...-++...
T Consensus 157 ~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~ 230 (611)
T KOG1173|consen 157 REEARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLT 230 (611)
T ss_pred HHHHHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccc
Confidence 67777777766654 33333333222111 11112222222221100 0122222222222211111111111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV 470 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 470 (820)
.-.+..-.+..-+........+-+...+++.+..++++.+.+.. +++...+-.-|.++...|+..+-..+=.++.+. .
T Consensus 231 r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-y 308 (611)
T KOG1173|consen 231 RNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-Y 308 (611)
T ss_pred cCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-C
Confidence 11111111224455555666666777777777777777777655 555555555566777777777766666666665 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
+....+|-++.--|...|+..+|.+.|.+....+.. =...|-.++..|.-.|..+.|+..|..+-+. +.-...-+--+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYl 386 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYL 386 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHH
Confidence 445667777777777777788888877776654321 2356777777777777777777777776653 11112222333
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHH
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCIL 630 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al 630 (820)
.--|.+.++.+-|.+.+.+++...|..+.+..-++.- .| ..+++.+|+
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv----------------ay----------------~~~~y~~A~ 434 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV----------------AY----------------TYEEYPEAL 434 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe----------------ee----------------hHhhhHHHH
Confidence 3456667777777777777777776654221111000 00 012555677
Q ss_pred HHHHHHHHC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHH
Q 003433 631 GVFQKMHKL--KIKP----NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDE 703 (820)
Q Consensus 631 ~~~~~m~~~--~~~P----d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~ 703 (820)
..|+..+.- .+.+ -..+++.|+.+|.+++++++|+..|++.+...|.+..+..++...+ ..|+++.|+..|.+
T Consensus 435 ~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 435 KYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 777666521 0111 2345788888888888888888888888888777777655554444 47788888888888
Q ss_pred HhhcCCCcchhHHHHHH
Q 003433 704 VKLMDSSTASAFYNALT 720 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~ 720 (820)
++-++|.+ ..+-..|.
T Consensus 515 aL~l~p~n-~~~~~lL~ 530 (611)
T KOG1173|consen 515 ALALKPDN-IFISELLK 530 (611)
T ss_pred HHhcCCcc-HHHHHHHH
Confidence 88888854 33334444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-11 Score=115.77 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCh
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT----VYAFSALISAYGRSGYC 244 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~ 244 (820)
+.+.++|+++|..|++.+ +.+..+..+|++.|.+.|.+|.|++++..+.++ +..+ ..+...|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d---~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED---PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC---chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888764 444456778888888888888888888888764 1111 34556677788888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARN 320 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~ 320 (820)
|.|.++|..+.+.+.. -......|+..|.... ++++|++.-+++.+.+-++.. ..|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~tr-eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATR-EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8888888888764321 3456667788887777 888888888888776554432 224444444555566777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 321 LFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 400 (820)
++.+..+.. +..+..--.+.+.+...|+++.|++.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+..
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~- 279 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN- 279 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-
Confidence 777766653 122333344556666666777777666666665433223445556666666666666666666666552
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
+....-..+...-....-.+.|...+.+-+.. .|+...+..||+.-
T Consensus 280 -~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 280 -TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred -CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 22222222322222233333444333332222 35555555555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-09 Score=108.40 Aligned_cols=274 Identities=12% Similarity=0.010 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
|+.....+.+.+...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... .-....|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4555566666666666666666666665544 22221 11111222345566666666666554322 22334444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
......++++.|+.+-++.++.. +.+...|..-...+...|+.++|.-.|+......+ -+..+|..|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 55556677777777777766542 23444554445666677777777777777765432 26677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHhh-cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSII-DAFGR-SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~-~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (820)
||.-+-+...+. +.-+..+.+.+. ..|.- ...-|+|...+++++...|.-. ...+.+...
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~-----------------~AV~~~AEL 447 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT-----------------PAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH-----------------HHHHHHHHH
Confidence 777665555443 222444544442 33322 2233667777777776655321 001111111
Q ss_pred HHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH
Q 003433 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (820)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (820)
.. ..|.+.+++.++++-+. ..||.+..+.|++.+...+.+++|++.|..++.+||++-..
T Consensus 448 ~~---------------~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 448 CQ---------------VEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HH---------------hhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 11 11244557888888776 77898888999999999999999999999999999987543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-10 Score=111.18 Aligned_cols=269 Identities=13% Similarity=0.132 Sum_probs=165.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
+.++|.++|.+|.+.... +..+-.+|.+.|.+.|.+|.|+++++.+.+.- ...+ ....-.|..-|...|-+|.|++
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 457777777777764222 34445566677777777777777777776641 1100 2334456666777777777777
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
+|..+.+.+.- -......|+..|-...+|++|++.-+++.+.+-.+.. .-|.-|...+....+++.|..++.+..
T Consensus 129 ~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 77777664321 3445666777777777777777777777766433332 224555555556667777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVL 511 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 511 (820)
+.+ +..+..-..+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+... ....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccH
Confidence 655 3444455556677777788888888887777764332345566777777778888887777777776543 3333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
-..+...-....-.+.|...+.+-+.. .|+...+..|++.-
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 333333333333345555554444442 57777777777754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-10 Score=120.00 Aligned_cols=489 Identities=9% Similarity=-0.000 Sum_probs=310.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
-+..+++=+..+.++..|.-+-+++...+ .|+..-..++.++.-.|++++|..+...-.-. ..|..+......++.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34556666667778888888888887655 34444556778888888888888777655321 247777777777777
Q ss_pred cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.. ++++|..++.... +.-+...|..-=. ...-..+.+. ++ .++......+-.-...|....+.++|.
T Consensus 94 ~lk-~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ar 161 (611)
T KOG1173|consen 94 KLK-EWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREEAR 161 (611)
T ss_pred HHH-HHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHHHH
Confidence 777 7888877776331 1111111110000 0000011111 00 011111222222344566677888888
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI----GLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
..|.+.... |...+..+...-.. . +-.+.+.|+.+..... .-+......+.....-...-++....-.+.
T Consensus 162 ~~Y~~Al~~----D~~c~Ea~~~lvs~-~-mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~ 235 (611)
T KOG1173|consen 162 DKYKEALLA----DAKCFEAFEKLVSA-H-MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE 235 (611)
T ss_pred HHHHHHHhc----chhhHHHHHHHHHH-H-hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence 888887765 55554443322111 1 1122222333322110 112222222222221111111111111111
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 431 ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVV 510 (820)
Q Consensus 431 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 510 (820)
.-.+...+......-.+-+...+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+-.+|.+..+. ...
T Consensus 236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~ 313 (611)
T KOG1173|consen 236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KAL 313 (611)
T ss_pred hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCc
Confidence 112334567777778888899999999999999998874 666667777777888999988888888888887543 788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCch
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDK 589 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 589 (820)
+|-+++--|...|+..+|.+.|.+... +.|... .|..+...|+-.|..|+|+..+..|-+..+.....
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--------- 382 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--------- 382 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch---------
Confidence 999999999999999999999999876 455554 89999999999999999999888777665432100
Q ss_pred hhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 003433 590 DVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLL 668 (820)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~ 668 (820)
..+-++- ++..+.++-|-+.|.+... +.| |...++-++-...+.+.+.+|..+|
T Consensus 383 ------~LYlgme-----------------y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 383 ------SLYLGME-----------------YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred ------HHHHHHH-----------------HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 0011110 1122355568888888775 778 5677888888888899999999999
Q ss_pred HHHhh----cCCch---hHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 669 EELRL----FDNQV---YGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 669 ~~~~~----~~~~~---~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
...++ .+++. ...+++++..+ +.+.+++|+..+++++.+.|++ +.+|.++|-+|...|+++.|...|-+++
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99873 22222 22344555555 4789999999999999999965 7789999999999999999999998876
Q ss_pred hhhh
Q 003433 741 RRQV 744 (820)
Q Consensus 741 ~~~~ 744 (820)
-...
T Consensus 517 ~l~p 520 (611)
T KOG1173|consen 517 ALKP 520 (611)
T ss_pred hcCC
Confidence 5443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-08 Score=104.83 Aligned_cols=508 Identities=12% Similarity=0.119 Sum_probs=323.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEG-YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
.++..-+..+.++|++..-+..|+.++..- +.....+|...+......|-.+-++.++++.++. .| ..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 477788888999999999999999997652 1123457888898888999999999999999983 33 346677888
Q ss_pred HHcCCCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCCC--HHHHHHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNG------VQPDRITFNSLLAVCSRGGLWEA---ARNLFNEMVHRGIDQD--IFTYNTLL 341 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~g~~~~--~~~~~~ll 341 (820)
+++.+ ++++|.+.+...+... .+.+-..|..+-....+.-+.-. ...++..++.. -+| ...|.+|.
T Consensus 179 L~~~d-~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 179 LAKSD-RLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHhcc-chHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 88899 9999999998876431 22344456555555555433322 23334444332 233 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHHCC
Q 003433 342 DAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR----------------------LDDALNMFSEMKFLG 399 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------------------~~~A~~~~~~m~~~~ 399 (820)
+-|.+.|.++.|..+|++.... ...+.-|+.+.+.|+.-.. ++-.+.-|+.+...+
T Consensus 256 dYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999998764 2245556666666654221 222223333333221
Q ss_pred -----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 400 -----------IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK------DAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 400 -----------~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
-+.+...|..-+.. ..|+..+-...|.++++.- .| -...|..+...|-..|+++.|+.+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 01222233333322 3466777778888776531 12 2356889999999999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------C-------CCCHHHHHHHHHHHHHc
Q 003433 463 EQMKADCVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG----------L-------KADVVLYSALIDALCKN 522 (820)
Q Consensus 463 ~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~-------~p~~~~~~~li~~~~~~ 522 (820)
++......+-- ..+|..-..+-.++.+++.|+++.+.....- - ..+...|..+++..-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887532211 3455555566667788999999888765321 0 11345677777777788
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
|-++....+|+++++..+. ++.+......-+-.+.-++++.+++++.+.+++=+... ..|+.-.
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~---------------diW~tYL 554 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY---------------DIWNTYL 554 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH---------------HHHHHHH
Confidence 9999999999999987543 33222222223345667889999998888776532111 1233322
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHhh-cCCchh
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNAC--SRCNSFEDASMLLEELRL-FDNQVY 679 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~--~~~g~~~eA~~~~~~~~~-~~~~~~ 679 (820)
.-|-+ ++|-. +.+.|..+|++.++ |+.|...-+.-|+.+- -.-|....|+.+|+++.. ..+.+-
T Consensus 555 tkfi~----rygg~--------klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~ 621 (835)
T KOG2047|consen 555 TKFIK----RYGGT--------KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQR 621 (835)
T ss_pred HHHHH----HhcCC--------CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHH
Confidence 22221 22221 56779999999998 7877655444444332 245888899999998753 233322
Q ss_pred HHHHHHHhccccc--hHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 680 GVAHGLLMGYRDN--IWVQALSLFDEVKLMDSSTA-SAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 680 ~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
..+++++..-... ....-..+|+++++.=|+.. .....-.+++-.+.|..+.|+.++.-+.+.
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 2233332111000 11234566777777656432 344556788889999999999998776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-09 Score=107.50 Aligned_cols=287 Identities=16% Similarity=0.147 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 276 ~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
.| ++.+|+++..+..+.+-. ....|..-..+.-..|+.+.+-+++.++.+..-.++..++-+........|+++.|..
T Consensus 97 eG-~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EG-DFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cC-cHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 56 889999988887776544 3445555666777889999999999888886445667778888888888999999998
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-------VSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-------~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
-++++.+.+.. +.........+|.+.|++.....++.+|.+.+.--|. .+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888877654 6777888889999999999999999999888765554 356666666655555665555666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..++.. ..-.+.+-++.+.-++..++-.+.... +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 55433 24567777788888999999999999999988887666522 222445667777777777776655433 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
+..+.+|+..|.+++.+.+|...|+..++ ..|+..+|..+.+++.+.|+.++|.+..++++-.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 68888999999999999999999998887 4789999999999999999999998887777643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-08 Score=105.46 Aligned_cols=499 Identities=14% Similarity=0.108 Sum_probs=281.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 313 (820)
.+.+.+..++++.-+......+..-+..++-.+..++ ...+ +.+++ .+...+..-.-|....+.+.+..
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~-~~Ee~--~Lllli~es~i~Re~~~d~ilsl----- 307 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKS-GQEEV--ILLLLIEESLIPRENIEDAILSL----- 307 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCC-cHHHH--HHHHHHHhhccccccHHHHHHHH-----
Confidence 4455667777777777777666655666655544433 2333 34444 33333332222222222221110
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
.-.+.++....+..|..+|..|.-++...|+++.+.+.|++....-+. ....|+.+...|...|.-..|..+++
T Consensus 308 -----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 308 -----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred -----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHH
Confidence 012223333334567888888888888899999999999887754332 56678888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHH--CCC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 003433 394 EMKFLGIGLD-RVSYNTVLSIYA-KLGRFEEALLVCKEMES--SGI--RKDAVTYNALLGGYGKQ-----------GKYD 456 (820)
Q Consensus 394 ~m~~~~~~~d-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~~~--~~~~~~~~~li~~~~~~-----------g~~~ 456 (820)
+-....-.|+ ...+...-..|. +.+.++++++.-.+++. .+. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 7665432243 333333333333 44667777777666654 111 12345555555555432 2244
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 457 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
++.+.+++..+.+ -.|++..| +.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+..
T Consensus 462 kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 6777777776654 23333333 44456667888888888888888765668888888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcC
Q 003433 536 TKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQ 615 (820)
Q Consensus 536 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (820)
.+. ..-|......=+..-..-++.++++..+...+........+..-...+. .....+.+... ..+
T Consensus 540 l~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~------------~~~lk~~l~la-~~q 605 (799)
T KOG4162|consen 540 LEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK------------LLRLKAGLHLA-LSQ 605 (799)
T ss_pred HHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh------------hhhhhcccccC-ccc
Confidence 754 1111111111122223355666666655554443332111110000000 00000000000 000
Q ss_pred CccchhhhhhHHHHHHHHH-HHHH---------CCCC--CC------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 616 GKKENRCRQEILCILGVFQ-KMHK---------LKIK--PN------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 616 ~~~~~~~~~~~~~Al~~~~-~m~~---------~~~~--Pd------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
...+. .-..++..+.+ +... .-.. |+ ...|....+.+.+.++.++|...+.++..+++-
T Consensus 606 ~~~a~---s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l 682 (799)
T KOG4162|consen 606 PTDAI---STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL 682 (799)
T ss_pred ccccc---hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh
Confidence 00000 00011111111 1111 1112 22 223667778888999999999888888877776
Q ss_pred hhHHHHHHHhc-cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHH--HHHHhhhhhhhhh-hhhccc
Q 003433 678 VYGVAHGLLMG-YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL--VVLEGKRRQVWEN-VWSESC 753 (820)
Q Consensus 678 ~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~-~~~~~~ 753 (820)
...+.+-.... ..+|.+.+|.+.|..++.+||++ .....+|+.+|.+.|+..-|.. +++.|.+.+..+. .|-. .
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~-L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY-L 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH-H
Confidence 65554433222 25789999999999999999977 5569999999999998877777 8888887765433 4532 1
Q ss_pred hhhhhcchhHHHHHHHHH
Q 003433 754 LDLHLMSSGAARAMVHAW 771 (820)
Q Consensus 754 ~d~~~~~~g~~~~~~~~w 771 (820)
|.++ ...|+-..|.+-+
T Consensus 761 G~v~-k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 761 GEVF-KKLGDSKQAAECF 777 (799)
T ss_pred HHHH-HHccchHHHHHHH
Confidence 2332 2355555555444
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-08 Score=110.34 Aligned_cols=293 Identities=13% Similarity=0.065 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
..|+..+.+.++.. ..+..+||+|.-. ...|.+.-|...|-+.+... +-+..+|..+...+.+..+++.|...|...
T Consensus 800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhh
Confidence 45666676666543 4566777766544 56677777777776655542 445667777777778888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H--HCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM--T--KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~--~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
....+. |...|-.........|+.-++..+|..- . ..|--++..-|......-..+|+.++-+...++.-.....
T Consensus 877 qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 877 QSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 775543 5666665555556677777777777762 2 2244556555555555556666666544432221110000
Q ss_pred hhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHC-CCCCCHHHHH----HH
Q 003433 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKL-KIKPNVVTFS----AI 651 (820)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~-~~~Pd~~~~~----~l 651 (820)
....+.+..+. +..+...... ....+++.+|+++..+.+.. ..+-|..+|+ ..
T Consensus 956 ----l~~yf~~~p~~---~fAy~~~gst---------------lEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 956 ----LSYYFLGHPQL---CFAYAANGST---------------LEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred ----HHHHHhcCcch---hHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 00000000000 0000000000 01123455555555554210 0111333333 44
Q ss_pred HHHHhccCCHHHHHHHHHHHhh-cCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHhhcCc
Q 003433 652 LNACSRCNSFEDASMLLEELRL-FDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 728 (820)
+..++..|.++.|...+..... .+...-+...+ .+-.++++++.+.|++++.+--. +.+.....+++..+..++
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~---lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT---LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH---HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 5566677888877776554321 11111121111 12367899999999999875322 223445567777888899
Q ss_pred hHHHHHHHHHhhhh
Q 003433 729 KRGAQLVVLEGKRR 742 (820)
Q Consensus 729 ~~~A~~~~~~~~~~ 742 (820)
.+.|+..+-+....
T Consensus 1091 k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSL 1104 (1238)
T ss_pred chHHHHHHHHHHHh
Confidence 99999887766544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-08 Score=103.92 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (820)
.+++...+++.+.+++..+.+ ..+....+-.+...|+-++|....+..++.++. +.+.|..++-.+....++++|+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eH---geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEH---GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCcc---chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 455556666655555543222 223334444455555566665555555544332 4455555555555555555565
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 327 (820)
..|......+.. |...|.-+--.-.+.+ +++.......+..+.... ....|..+..++.-.|+...|..++++..+
T Consensus 96 Kcy~nAl~~~~d-N~qilrDlslLQ~QmR-d~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 96 KCYRNALKIEKD-NLQILRDLSLLQIQMR-DYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555543322 3334443333334444 444444444444433111 233344444444445555555555555444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-09 Score=108.15 Aligned_cols=285 Identities=15% Similarity=0.110 Sum_probs=137.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHH
Q 003433 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285 (820)
Q Consensus 206 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~ 285 (820)
.|++..|+++..+..+.+.. .+..|..-+.+.-..|+.+.|-.++.+..+..-+++...+-+........| +...|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~-d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR-DYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC-CchhHHH
Confidence 35555555555554443322 222333334444444555555555555544322334444444444444444 4555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI-------FTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 286 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
-.+++.+.+.. +.........+|.+.|++.....++..+.+.|.-.|. .+|+.+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 55555444332 3444444455555555555555555555554433221 244455554444444444444444
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
+.... .+-+...-.+++.-+.+.|+.++|.++.++..+.+..+. ...+ -.+.+-++.+.-++..++-.+.. +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 44432 222344444555555556666666666655555543333 1111 12334444444444444443322 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
+..+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+++++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 455555666666666666666666655543 4566666666666666666666666655544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-08 Score=96.21 Aligned_cols=373 Identities=13% Similarity=0.199 Sum_probs=194.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
.++...+.+.|++++|+..|..+...+ ..+..+...+.-++.-.|.+.+|..+-.++.+ +.-.-..|.....
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlah 132 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAH 132 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHH
Confidence 445666666677777776666655532 22233555555556666666666666555432 2222333444444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA-VCSRGGLWEA 317 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~ 317 (820)
+.++-++-..+-+.+.. ....--+|.. .|.+. .+.+|+++|.+.+.. .|+-...|.-+. +|.+..-++-
T Consensus 133 klndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~--HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydv 203 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRM--HYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDV 203 (557)
T ss_pred HhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHH--HHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhh
Confidence 55554444444444332 1111111111 12332 466777777766654 233333443333 3456666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHH
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG-----RLDDALNMF 392 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~ 392 (820)
+.++++-.++. ++.+....|..+....+.=+-..|.+-.+++.+.+-. .| -.+.-.++.+ .-+.|++++
T Consensus 204 sqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~-~f~~~l~rHNLVvFrngEgALqVL 277 (557)
T KOG3785|consen 204 SQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY-PFIEYLCRHNLVVFRNGEGALQVL 277 (557)
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc-hhHHHHHHcCeEEEeCCccHHHhc
Confidence 66666665553 2333444454444444433333333334443332110 01 1222333322 345566665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHH
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG-------KYDEVRRMFEQM 465 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m 465 (820)
--+.+. -| ..-..|+-.|.+.+++.+|..+.+++. +.++.-|-.-.-.++..| .+.-|.+.|...
T Consensus 278 P~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 278 PSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred hHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 554432 22 233445667888899999988877664 333333322222233333 345566666665
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 466 KADCVSPNLL-TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV 544 (820)
Q Consensus 466 ~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 544 (820)
-+++..-|.. --.++...+.-..++++.+..++.+...-...|...+| +..+++..|++.+|.++|-+.....++ |.
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hh
Confidence 4444333322 23345555666667888888887776654343444444 778888899999999988877654444 55
Q ss_pred HHHHHHH-HHHhhcCchhhhHH
Q 003433 545 VTYNSII-DAFGRSATTECTVD 565 (820)
Q Consensus 545 ~~~~~ll-~~~~~~g~~~~a~~ 565 (820)
.+|.+++ .+|.++++.+.|.+
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHH
Confidence 6665544 46677777665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-10 Score=128.26 Aligned_cols=149 Identities=10% Similarity=-0.052 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003433 209 VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (820)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~ 288 (820)
+++|...++++++.++. +..++..+..++...|++++|...|++..+.++. +...|..+...+...| ++++|+..++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G-~~~eAi~~~~ 396 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAG-QLEEALQTIN 396 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 44555555555544322 4444445555555555555555555555443211 2334444444444455 4555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 289 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
++++.... +...+..++..+...|++++|+..++++.+...+.+...+..+..+|...|++++|.+.++++.
T Consensus 397 ~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 397 ECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 55443222 1111222222333344455555555444433211123334444444444555555555544443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.1e-08 Score=103.03 Aligned_cols=430 Identities=13% Similarity=0.009 Sum_probs=267.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHH-H
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVT-Y 372 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~ 372 (820)
.+.-|...|..|.-+....|+++.+.+.|++....- -.....|+.+...|...|.-..|..++++.......|+..+ +
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345678888888888999999999999999988753 23567899999999999999999999998776543344333 3
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCC
Q 003433 373 STMIDGY-AKAGRLDDALNMFSEMKFL--GI--GLDRVSYNTVLSIYAKL-----------GRFEEALLVCKEMESSGIR 436 (820)
Q Consensus 373 ~~li~~~-~~~g~~~~A~~~~~~m~~~--~~--~~d~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~ 436 (820)
-..-..| .+.+.+++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 2222333 3467788888887777662 11 22334555555555432 12457788888887766 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
-|+.+...+.--|+..++++.|.+..++.++.+-..+...|..|.-.+...+++.+|+.+.+...+.-. -|......-+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKI 554 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhh
Confidence 444444445556888899999999999999886677899999999999999999999999988765421 1222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHH--HHHHHH----hhcCchhhhHHhHHHHhhhhhh---hhhhhhhhc
Q 003433 517 DALCKNGLVESAVSLLDEMTKE--GIRPNVVTYN--SIIDAF----GRSATTECTVDDVERDLGKQKE---SANLDAMCS 585 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~--~ll~~~----~~~g~~~~a~~~~~~~l~~~~~---~~~~~~~~~ 585 (820)
..-..-|+.++|+.....++.. ...+-..+.. .+.+.. ...++..+++....++...... ..+....+-
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 3444567777877777766542 0000000000 000000 0111222222222222211100 000000000
Q ss_pred -cCchhhhh-----hccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 003433 586 -QDDKDVQE-----AGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRC 658 (820)
Q Consensus 586 -~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~ 658 (820)
....+... --..|..+.+.|.+. +..++|.-.+.+... +.|- ...|...+..+-..
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~---------------~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLS---------------GNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhc---------------CCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHH
Confidence 00000000 000111112222211 123345545555443 4453 44566777778888
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccch--HHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI--WVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
|.++||.+.|..++..||++..+...+...+ +.|+ ..++..+...+++.||.+ ...|..||.++.+.|+.++|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999999999999988877665433 3444 444555999999999955 77799999999999999999999
Q ss_pred HHHhhhhhh
Q 003433 736 VLEGKRRQV 744 (820)
Q Consensus 736 ~~~~~~~~~ 744 (820)
|..+.+...
T Consensus 777 f~aa~qLe~ 785 (799)
T KOG4162|consen 777 FQAALQLEE 785 (799)
T ss_pred HHHHHhhcc
Confidence 998876543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-08 Score=103.86 Aligned_cols=407 Identities=15% Similarity=0.132 Sum_probs=255.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.++.+|.. .+...++.....-.+...|+-++|.......++.+.. ....|..++-.+....++++|++.|..++
T Consensus 29 ~~~~iL~k---~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl 102 (700)
T KOG1156|consen 29 LIKQILKK---FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNAL 102 (700)
T ss_pred HHHHHHHh---CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444443 3334566666555667788999999999988887543 34588888888888899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-CCCCH
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG-VQPDR 299 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g-~~p~~ 299 (820)
+.+. .|...|.-|.-.-++.|+++...+.-..+.+.... ....|..+..+..-.| +...|..++++..+.. -.|+.
T Consensus 103 ~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g-~y~~A~~il~ef~~t~~~~~s~ 179 (700)
T KOG1156|consen 103 KIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLG-EYKMALEILEEFEKTQNTSPSK 179 (700)
T ss_pred hcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCH
Confidence 8764 37888888877778888888888887777764322 4567777777777788 8999999999988764 24666
Q ss_pred HHHHHHHHH------HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHH
Q 003433 300 ITFNSLLAV------CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 300 ~~~~~ll~~------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
..|.-.... ..+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..++... ||.+.|.
T Consensus 180 ~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy 256 (700)
T KOG1156|consen 180 EDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYY 256 (700)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHH
Confidence 666544433 34567777777776655443 22223344556778888999999999999988874 5666555
Q ss_pred HH-HHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 374 TM-IDGYAKAGRLDDAL-NMFSEMKFLGIGLDRVSYNTV-LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 374 ~l-i~~~~~~g~~~~A~-~~~~~m~~~~~~~d~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.. ..++.+-.+.-++. .+|....+. .|-...-.-+ ++......-.+..-+++..+.+.|+++ ++..+...|-
T Consensus 257 ~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk 331 (700)
T KOG1156|consen 257 EGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHh
Confidence 44 44444333444444 566655544 2221111111 111111122333444556667777653 3334444443
Q ss_pred hcCCHHHHHHHHHHHHH----CC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH
Q 003433 451 KQGKYDEVRRMFEQMKA----DC----------VSPNLLTY--STLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYS 513 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~----~~----------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~ 513 (820)
.-...+-..++.-.+.. .| -+|....| -.++..|-+.|+++.|....+..++. .|+ +..|.
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~ 409 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYL 409 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHH
Confidence 22222211122222211 11 14444444 45677778888899998888888775 344 34555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
.-.+.+..+|++++|..++++..+.+ .+|...=.--..-..+..+.++|.++.
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 55678888889999998888888753 335444435555556777777776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-08 Score=94.76 Aligned_cols=386 Identities=13% Similarity=0.090 Sum_probs=244.6
Q ss_pred ccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003433 151 FKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYA 230 (820)
Q Consensus 151 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 230 (820)
...+..+.+..+.-.+.-.|.+.+|.++-..+.+. .--...|...-.+.|+-++-..+.+.+.. +..-
T Consensus 86 ~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-------pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~Ed 153 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT-------PLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLED 153 (557)
T ss_pred cCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHH
Confidence 34445566777777777788888888876655332 22334566666788888888777777654 2344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID-ACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
..+|..+.-..-.+++|++++.+....+ |+-...|.-+. +|.+.. -++-+.+++.-.++. +.-+....|..+...
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD-Yydvsqevl~vYL~q-~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD-YYDVSQEVLKVYLRQ-FPDSTIAKNLKACNL 229 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHh-CCCcHHHHHHHHHHH
Confidence 5567776666678999999999998743 56666666554 456777 788888888877765 222344444444333
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 384 (820)
.+.=.-..|.+-...+.+.+-.. | -.+.-+++. .+-+.|++++-.+.+. -...--.|+-.|.+.++
T Consensus 230 fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 230 FRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQND 300 (557)
T ss_pred hhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeeccccc
Confidence 33322233444445554443111 1 123333443 4567888888776654 33445567778999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTV-----LSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEV 458 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~l-----i~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A 458 (820)
+.+|..+.+++.-. .|-......+ ..-......+.-|.+.|+-.-+.+..-|. .--.++...+.-..++++.
T Consensus 301 VqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 301 VQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999998876422 2322222222 22222223456677777666555544333 2344566677777889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS-ALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 459 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+.+++.+...-...|.+.+| +.++++..|++.+|.++|-.+....++ |..+|. .|.++|.++++.+.|+.++-++-.
T Consensus 379 l~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t 456 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT 456 (557)
T ss_pred HHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 99999888775555666655 889999999999999999888765555 555664 556788999999999988776643
Q ss_pred CCCCCCHHHHHH-HHHHHhhcCchhhhHHhHH
Q 003433 538 EGIRPNVVTYNS-IIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 538 ~g~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~ 568 (820)
..+..+... +.+-|.+.+.+--|-+.+.
T Consensus 457 ---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 457 ---PSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 224444444 4446777776654444433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-09 Score=111.50 Aligned_cols=246 Identities=16% Similarity=0.161 Sum_probs=146.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 218 TALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 218 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
.+...|+.|+.++|..+|.-||..|+.+.|- +|.-|.-....-+...++.++.+....+ +.+.+. .|
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep 81 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EP 81 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CC
Confidence 3444455555566666666666666665555 5555554444445555555555555555 443332 34
Q ss_pred CHHHHHHHHHHHHhCCCHHH---HHHHHHHHHH----CC-----------------CCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEA---ARNLFNEMVH----RG-----------------IDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~----~g-----------------~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
-..||..|..+|...||+.. .++.++.+.. .| .-||. ...+....-.|-++.+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQL 158 (1088)
T ss_pred chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHHH
Confidence 55556666666665555433 2221111111 11 11222 2234445556677777
Q ss_pred HHHHHHchhCCCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNIS-PNVVTYSTMIDGYAKA-GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 354 ~~~~~~m~~~g~~-p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
++++..+....-. |..+ .+.-+... ..+++-..+.+...+ .++..+|..+++.-...|+++.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 7777766543111 1111 12222222 223333333333322 5899999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+.|++.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+.+.|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99998888777777655 78888888899999999999999999887777776554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-09 Score=104.02 Aligned_cols=226 Identities=9% Similarity=0.052 Sum_probs=108.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+.+.|.+.|.+.+|.+.|+..+.+.. .. .+|..|..+|.+..+...|+.+|.+.++. ++-|+.....+.+.+-..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~--~~--dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFP--HP--DTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCC--ch--hHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 55555555555555555555554421 11 14444555555555555555555555443 233444444445555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
++.++|.++|+...+... -|+....++..+|.-.+ +.+-|+.+|+++++.|+. +...|+.+.-+|.-.+++|.++..
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~-~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDN-NPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCC-ChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 555555555555554321 13334444444444444 555555555555555554 445555555555555555555555
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 322 FNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 322 ~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
|++....--.++ ..+|..|.......|++..|.+.|+-....+.. +...++.|.-.-.+.|++++|..++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 555544322222 234444444444555555555555544443222 33444554444455555555555554443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=109.12 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
...+..+...|...|++++|++.+++..+... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555555555666666666555554321 134445555555555555555555555555443 2333444455555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
+...|++++|.+.+++..+... ......+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555543211 1122334444445555555555555555544432 2223344444455555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
|...+++..+.. ..+...+..++..+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555544431 2233444444444444555555554444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-10 Score=124.65 Aligned_cols=250 Identities=13% Similarity=0.058 Sum_probs=151.9
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 243 YCQEAISVFNSMKRYNLKPN-LVTYNAVIDACG---------KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
.+++|+++|++..+. .|+ ...|..+..++. ..+ ++++|...++++++.... +...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~-~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQN-AMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccch-HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 456666666666653 232 333433333322 223 467788888877776443 566677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
|++++|...|+++++.. +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 88888888888877764 334666777777788888888888888887776433 2223334444566677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VS 471 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 471 (820)
+++.+...+-+...+..+..+|...|+.++|...+.++.... +.+....+.+...|...| ++|...++.+.+.. ..
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 777655312234456667777778888888888887765432 233444555666666666 46666666655421 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (820)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 504 (820)
+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 222222 33344445666666555 6666543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-08 Score=100.56 Aligned_cols=457 Identities=16% Similarity=0.161 Sum_probs=244.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG-- 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-- 239 (820)
=+..+...+++++|++...+++... +++..++..-+.++.+.++|++|+.+.+.-.... ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~---pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV---PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC---CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHH
Confidence 3455677889999999999888774 4445566777777889999999986555432210 011111 234444
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A 318 (820)
+.++.|+|+..++.+.. -+..+...-...+.+.+ ++++|+.+|+.+.+.+.+- |...-..++.+- -.-.+
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~-~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLE-RYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQV 161 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhH
Confidence 67889999988883332 13334555556677888 8999999999998775431 111111222111 11111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------C------CCCCH-HHHHHHHHHHHHcCC
Q 003433 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------N------ISPNV-VTYSTMIDGYAKAGR 384 (820)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g------~~p~~-~~~~~li~~~~~~g~ 384 (820)
. +.+..... ...+-..+......+...|++.+|+++++...+. + +.-+. ..-..|.-.+...|+
T Consensus 162 ~-~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 Q-LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 12222111 1112222333455677789999999999887221 1 00011 122335556778899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHH-HHHHHHHHHHH-----------CCCCCCHHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFE-EALLVCKEMES-----------SGIRKDAVTYNALLGG 448 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~----~~~li~~~~~~g~~~-~A~~~~~~~~~-----------~~~~~~~~~~~~li~~ 448 (820)
.++|..++...++.. .+|... -|.|+.+-....-++ .++..++.... ..-.....--+.++..
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988875 455432 233332211111111 12222222111 0000111111233333
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS-K-GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
|. +..+.+.++-..... ..|... +.+++.... . .....+|.+++...-+....-..++.-.++.....+|+++
T Consensus 319 ~t--nk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred Hh--hhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 32 334444444443322 233333 333333322 2 2246677777777766544433556666677778899999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccch
Q 003433 527 SAVSLLD--------EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTD 598 (820)
Q Consensus 527 ~A~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (820)
.|++++. ...+.+..|- +...+...+.+.++.+.|..++.+++.+...+
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~--------------------- 450 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ--------------------- 450 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHh---------------------
Confidence 9999888 4444443333 44455555666666666665555544432221
Q ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 599 NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.. ..+. ..++.-+..--.+.|+-++|..+++++.+.+|.
T Consensus 451 --------------------------------------~t--~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~ 490 (652)
T KOG2376|consen 451 --------------------------------------QT--GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPN 490 (652)
T ss_pred --------------------------------------cc--cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCc
Confidence 10 0000 011111111122447888888888888887887
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHh
Q 003433 678 VYGVAHGLLMGYRDNIWVQALSLFDEVK 705 (820)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 705 (820)
+..++..++.+|..-+.+.|+.+-+++.
T Consensus 491 d~~~l~~lV~a~~~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 491 DTDLLVQLVTAYARLDPEKAESLSKKLP 518 (652)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhhcCC
Confidence 7777777777776667777777766543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=108.70 Aligned_cols=199 Identities=14% Similarity=0.059 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|++.+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555555555555555555555555432 223445555555555555555555555555544322 33445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGI-GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
|...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555554311 1122344445555555555555555555555433 2334455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
|...+++..+. .+.+...+..++..+...|+.++|..+++.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555544 23334444445555555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-09 Score=117.22 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=191.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.++-.+...|+.||-+||..+|.-|+..| +.+.|- +|.-|.-.....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~g-dieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKG-DIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccC-CCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34556667788888888888888888888 777776 7777776666667778888888888888777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSY 407 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~ 407 (820)
.|-..+|..|..+|.+.|++.. |+...+ ..-.++..+...|.......++..+.-. +.-||..+
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 4667888888888888888766 332222 1223344455566666655655554322 23344433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ-GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
.+....-.|.++.+++++..+..... ..+... +++-+... ..+++-..+.+...+ .++..+|..++..-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence 33444566778888777766532211 111111 23322222 233443333333333 5899999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhh
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 563 (820)
.|+.+.|..++.+|.+.|+..+..-|..|+-+ .|...-+..+++-|.+.|+.|+..|+.-.+-.+..+|....+
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 99999999999999999998888777777655 888889999999999999999999999888888877765444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-09 Score=115.24 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CC
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKEMESS-----GI-RKDAV-TYNALLGGYGKQGKYDEVRRMFEQMKAD-----C-VS 471 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~ 471 (820)
.+...|..+|...|+++.|..+++..++. |. .+.+. ..+.+...|...+++++|..+|++++.. | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777777777777777777766542 10 12222 2233566677777777777777776542 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC
Q 003433 472 PN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQA-----GL-KADV-VLYSALIDALCKNGLVESAVSLLDEMTKE---GI 540 (820)
Q Consensus 472 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~ 540 (820)
|. ..+++.|...|.+.|++++|...+++..+. |. .+.+ ..++.++..|+..+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 345666666777777777776666655431 11 1122 23445556667777777777777765542 11
Q ss_pred CCCH----HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC
Q 003433 541 RPNV----VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (820)
Q Consensus 541 ~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (820)
.++. .+++.|...|.+.|++++|.+++++++.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~-------------------------------------------- 395 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ-------------------------------------------- 395 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH--------------------------------------------
Confidence 1221 2566666666666666666655444332
Q ss_pred ccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHH
Q 003433 617 KKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWV 695 (820)
Q Consensus 617 ~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (820)
..++... +..+ ....++.|..+|.+.+..++|.++|.+...+
T Consensus 396 ---------------~~~~~~~-~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i--------------------- 438 (508)
T KOG1840|consen 396 ---------------ILRELLG-KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI--------------------- 438 (508)
T ss_pred ---------------HHHhccc-CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH---------------------
Confidence 2222211 1122 2456789999999999999999999887621
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
. +..-.+..+....|-.|+-+|.+.|++++|.++....
T Consensus 439 -----~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 439 -----M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred -----H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1111111123456888999999999999999997654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=108.13 Aligned_cols=245 Identities=11% Similarity=0.031 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
|-.--+.|.++|.+.|.+.+|.+.|+...+. .|-..||..|-.+|.+..+.+.|+.+|.+-++.- +-|+....-+..
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHH
Confidence 3333467889999999999999999988877 6777888889999999999999999998887653 344444455677
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+...++.++|.++|+...+.. +.++.....+...|.-.++.+.|+++++++++.|+. +...|+.+.-+|.-.++++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999988763 556777777888888889999999999999999986 88888888888888999999
Q ss_pred HHHHHHHHHHCCCCCCH--HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHH
Q 003433 528 AVSLLDEMTKEGIRPNV--VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVF 605 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (820)
++..|++.+..--.|+. .+|..|.......|++.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~n-------------------------------------------- 412 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFN-------------------------------------------- 412 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchH--------------------------------------------
Confidence 99999888765333443 24444443333333332
Q ss_pred HHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 606 GQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
-|...|+-.+.. +| +...++.|.-.-.+.|++++|+.++..+....|.-+.+..+
T Consensus 413 ----------------------lA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 413 ----------------------LAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred ----------------------HHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 344556555442 23 35567888777788999999999999988877776665544
Q ss_pred H
Q 003433 685 L 685 (820)
Q Consensus 685 ~ 685 (820)
+
T Consensus 469 l 469 (478)
T KOG1129|consen 469 L 469 (478)
T ss_pred e
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-07 Score=93.24 Aligned_cols=269 Identities=11% Similarity=0.069 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 376 (820)
|+.....+.+.+...|+.++|+..|++....+ |+ +.......-.+.+.|+++....+...+.... +-....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 44455555666666666666666666655432 21 1122222233345555555555554444321 00222233333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
......++++.|+.+-++.++.. +.+...|..-...+...|+.++|.-.|+...... +-+...|.-|+..|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 33344555666666555555443 2233334333445555566666666665554432 345556666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLI-DVYS-KGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
+|..+-+..... ++.+..+...+. ..+. ....-++|.++++..+.. .|+. ...+.+...+...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 665555443332 223334443332 2222 122235566666555543 2332 233444555556666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
+.+. ..||....+.|.+.+.....+++|.+.|..++..+|.
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 6555 3556666666666666666666666655555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-07 Score=99.29 Aligned_cols=263 Identities=18% Similarity=0.200 Sum_probs=124.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+........+...|++++|++.++..... ..+...+....+..+.+.|+.++|..+|..+++.++. |..-|..|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~ 80 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHH
Confidence 33444556666777777777777655444 2444556666777777777777777777777776543 4444555555
Q ss_pred HHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 237 AYGRS-----GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK-HVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (820)
Q Consensus 237 ~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (820)
+..-. ...+...++|+++...- |.......+.-.+.... .+. .+..++..++..|++ .+|+.|-..|.
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~-~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~ 154 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGD-EFKERLDEYLRPQLRKGVP---SLFSNLKPLYK 154 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHH-HHHHHHHHHHHHHHhcCCc---hHHHHHHHHHc
Confidence 54222 23455566666665432 33333333322222222 232 333444555555543 23444444444
Q ss_pred hCCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVHR----G----------IDQDI--FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~----g----------~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 374 (820)
.....+-..+++..+... + -+|.. .++..|...|...|++++|++++++.++.... .+..|..
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~ 233 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMT 233 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 444444444444443321 0 01111 22233344444444444444444444443211 1334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
....|-+.|++++|.+.++.....+ .-|...-+..+..+.+.|++++|.+++....
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 4444444444444444444444443 2344444444444444444444444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-08 Score=110.31 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=213.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG---- 274 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~---- 274 (820)
...++...|++++|++.++...+. +.............+.+.|+.++|..+|..+++.+ |+...|...+..+.
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 355678899999999999887664 44456777888999999999999999999999865 56665555444443
Q ss_pred --cCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 275 --KGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMD 351 (820)
Q Consensus 275 --~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~ 351 (820)
... +.+...++|+++...- |.......+.-.+.....+ ..+..++..+..+|++ .+++.|-..|....+.+
T Consensus 87 ~~~~~-~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDE-DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccc-cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 122 4688889999987753 3333333332222222233 3455667777888864 45677777777666666
Q ss_pred HHHHHHHHchhC--------------CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 003433 352 LAFEIMAEMPAK--------------NISPNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIY 414 (820)
Q Consensus 352 ~A~~~~~~m~~~--------------g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~ 414 (820)
-..+++...... .-.|.. .++..+...|-..|++++|++++++.++. .|+ +..|..-...|
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666554321 112444 34466678889999999999999999988 455 67888899999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H----HH--HHHHHHHHh
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--L----TY--STLIDVYSK 486 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~----~~--~~li~~~~~ 486 (820)
-+.|++++|.+.++.....+ ..|...-+-.+..+.++|++++|.+++......+..|-. . .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877 567788888889999999999999999988766543322 1 22 455789999
Q ss_pred cCCHHHHHHHHHHHHH
Q 003433 487 GGLYKEAMQIFREFKQ 502 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~ 502 (820)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999988777654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.3e-07 Score=93.36 Aligned_cols=455 Identities=12% Similarity=0.101 Sum_probs=246.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG 277 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g 277 (820)
+=++.+...|++++|.+...+++..+ +.+..++..=+-+..+.+++++|+.+.+.-... .-+.+-+--=.-+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 44677889999999999999999876 457778888888899999999999665543210 111111111123345777
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 003433 278 VDFKHVVEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-DIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 278 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
..++|+..++ |..+ |..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-.. -.+ +
T Consensus 94 -k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~-~ 162 (652)
T KOG2376|consen 94 -KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV-Q 162 (652)
T ss_pred -cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH-H
Confidence 8899999888 3333 33355555677899999999999999998875321 12222222222111 111 1
Q ss_pred HHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHHHcC
Q 003433 356 IMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLG-------IGLDR-------VSYNTVLSIYAKLG 418 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~-------~~~d~-------~~~~~li~~~~~~g 418 (820)
+.+..... | ..+|..+ ...+...|++.+|+++++.....+ -.-+. ..-.-|.-++-..|
T Consensus 163 ~~q~v~~v---~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G 238 (652)
T KOG2376|consen 163 LLQSVPEV---P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG 238 (652)
T ss_pred HHHhccCC---C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 23333322 2 2344433 445678999999999999883221 01111 11233445677889
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH-HHHHHHHHHHHCC-----------CCCCHHHHHHHHH
Q 003433 419 RFEEALLVCKEMESSGIRKDAVT----YNALLGGYGKQGKYD-EVRRMFEQMKADC-----------VSPNLLTYSTLID 482 (820)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~-~A~~~~~~m~~~~-----------~~p~~~~~~~li~ 482 (820)
+.++|..++...++.. .+|... -|.|+.+-....-++ .++..++...... ..-....-+.++.
T Consensus 239 qt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 239 QTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred chHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776 445422 233332211111111 1222222211110 0001111122233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchh
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC-KNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 561 (820)
+|. +..+.+.++...+.. ..|....=+.+..++. +.....+|.+++...-+....-..++...++......|+++
T Consensus 318 l~t--nk~~q~r~~~a~lp~--~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPG--MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHh--hhHHHHHHHHHhCCc--cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 332 223333333332221 1222222222222222 22235666666666655321112334445555556666666
Q ss_pred hhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCC
Q 003433 562 CTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKI 641 (820)
Q Consensus 562 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~ 641 (820)
.|++++...+.. -.....+.+.
T Consensus 394 ~A~~il~~~~~~----------------------------------------------------------~~ss~~~~~~ 415 (652)
T KOG2376|consen 394 VALEILSLFLES----------------------------------------------------------WKSSILEAKH 415 (652)
T ss_pred HHHHHHHHHhhh----------------------------------------------------------hhhhhhhhcc
Confidence 665543221100 0013334445
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhc--CCchh-HHHHHH---Hhcc--ccchHHHHHHHHHHHhhcCCCcch
Q 003433 642 KPNVVTFSAILNACSRCNSFEDASMLLEELRLF--DNQVY-GVAHGL---LMGY--RDNIWVQALSLFDEVKLMDSSTAS 713 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~--~~~~~-~~~~~~---~~~~--~~~~~~~A~~~~~~~~~~~~~~~~ 713 (820)
.|..| .++...|.+.++.+.|..+++++... +.... ..+..+ ...+ +.|+-++|...++++++.+|++ .
T Consensus 416 ~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d-~ 492 (652)
T KOG2376|consen 416 LPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND-T 492 (652)
T ss_pred ChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch-H
Confidence 56655 45667777877777788888776521 11110 111111 1122 5688999999999999999965 6
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHH
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVL 737 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~ 737 (820)
.....++..|++. +.+.|+.+-+
T Consensus 493 ~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 493 DLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhh
Confidence 6688888888887 6677776643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-08 Score=108.56 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC---CCC
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKAD---CVSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL---KAD 508 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~ 508 (820)
+.++..++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.++|++.+.. +- .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33444555555555555555543221 01111 235666666666666666666666665432 11 111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTK----EGI-RPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
...++.|...|.+.+++++|.++|.+... .|. .|+.. +|..|...|.+.|+++.|+++.+.++...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33455666666666777766666666432 122 23433 67777777777777777777766666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.3e-08 Score=100.27 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=87.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC-HHHHHHHHHHHHHcCC
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGR 384 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 384 (820)
.++.+..|+++.|..+|-+.+... ++|.+.|..-..+|.+.|++++|++=-.+-++. .|+ ...|+-+..++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 356678899999999999999876 448889999999999999999999887777665 445 4578889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
+++|+.-|.+-++.. +-+...++-|.+++
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 999999999988775 55677788888877
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-06 Score=92.85 Aligned_cols=112 Identities=16% Similarity=0.229 Sum_probs=60.8
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHH---H-HHhhcC-chHHHHHHHHHhhhhhhhhh---hhhccchhhhh-cc
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALT---D-MLWHFG-QKRGAQLVVLEGKRRQVWEN---VWSESCLDLHL-MS 760 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~---~-~~~~~g-~~~~A~~~~~~~~~~~~~~~---~~~~~~~d~~~-~~ 760 (820)
..|.+++|.+.|-++++++-- +.+.+.+.- + -..+.| +.++|.++|.. .+-|.. +--.||-|+.- --
T Consensus 1007 degk~edaskhyveaiklnty-nitwcqavpsrfd~e~ir~gnkpe~av~mfi~---dndwa~aervae~h~~~~l~dv~ 1082 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTY-NITWCQAVPSRFDAEFIRAGNKPEEAVEMFIH---DNDWAAAERVAEAHCEDLLADVL 1082 (1636)
T ss_pred hccchhhhhHhhHHHhhcccc-cchhhhcccchhhHHHHHcCCChHHHHHHhhh---cccHHHHHHHHHhhChhhhHHHH
Confidence 478888998888888887652 222111110 1 134556 67788877642 334432 12235544321 12
Q ss_pred hhHHHHHHHHHHHHHHHH--hhcCCCCChhHHHHHHHhhhhhhHHHHHH
Q 003433 761 SGAARAMVHAWLLNIHSI--VFEGHELPKLLRYMIICLSVADECLLLLK 807 (820)
Q Consensus 761 ~g~~~~~~~~w~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (820)
+|.+..+++.= +..++ ...-...|.+.-......++|-+++-+.|
T Consensus 1083 tgqar~aiee~--d~~kae~fllrankp~i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1083 TGQARGAIEEG--DFLKAEGFLLRANKPDIALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred hhhhhcccccc--chhhhhhheeecCCCchHHHHHHHhccChHHHHHHH
Confidence 67777776421 11111 11113357777777888899888775544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-07 Score=97.57 Aligned_cols=416 Identities=15% Similarity=0.117 Sum_probs=254.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
-..+....|+++.|+.+|..++..+ |.+..+|+.-..+|.+.|++++|.+=-.+.++..+. =...|+-...++.-.
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~---p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS---PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC---CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhc
Confidence 4566778999999999999999885 446779999999999999999999888888776432 256899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhCCCHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLA-----VCSRGGLWE 316 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~ 316 (820)
|++++|+.-|.+-++.... |...++.+..++.. + ..+.+.| -+...|..+.. .+...-.+.
T Consensus 84 g~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~---~-~~~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLE---D-YAADQLF---------TKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred ccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhH---H-HHhhhhc---------cCcHHHHHhhcChhhhhhhccHHHH
Confidence 9999999999998875322 55566666666511 1 1111111 12233322221 111111111
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHH-HHHH------------HHchhCCCCC-C----------H
Q 003433 317 AARNLFNEMVHRGIDQDIFT---YNTLLDAICKGAQMDLA-FEIM------------AEMPAKNISP-N----------V 369 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~---~~~ll~~~~~~g~~~~A-~~~~------------~~m~~~g~~p-~----------~ 369 (820)
.- ++.+ ..+ +.++.. .-.++.+.......+.- ...- ..+....... | .
T Consensus 150 ~~---l~~~-~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a 224 (539)
T KOG0548|consen 150 KI---LEII-QKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKA 224 (539)
T ss_pred HH---HHHh-hcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhh
Confidence 11 1111 111 000000 01111111111000000 0000 0000000000 1 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-----
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA----- 444 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----- 444 (820)
.-...+.++..+..+++.|++.+....+.. -+..-++....+|...|.+.+....-...++.| .-...-|+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~ 301 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKAL 301 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHH
Confidence 224557777788889999999999888774 455556777789999999888888877776665 222233332
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 445 --LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 445 --li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
+..+|.+.++++.|+..|.+.+.....||.. .+....+++.+..+...-.++.. ..--..-...+.+.
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKK 371 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhc
Confidence 3446777888999999999977654444332 23345566666655554443222 11122236678899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
|++..|++.|.++++.. .-|...|....-+|.+.|.+..|+.-.+.+++.+|...
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~------------------------ 426 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI------------------------ 426 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH------------------------
Confidence 99999999999999875 33666899999999999999999998888888866542
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTF 648 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~ 648 (820)
.+|.+-+. ....++++++|++.|++.++ .+|+..-+
T Consensus 427 kgy~RKg~--------al~~mk~ydkAleay~eale--~dp~~~e~ 462 (539)
T KOG0548|consen 427 KAYLRKGA--------ALRAMKEYDKALEAYQEALE--LDPSNAEA 462 (539)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHh--cCchhHHH
Confidence 11111110 02233478889999998887 55665433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.2e-07 Score=95.73 Aligned_cols=229 Identities=17% Similarity=0.158 Sum_probs=128.5
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCCHHHHHHHHH
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG---------YGNTVYAFSALIS 236 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~li~ 236 (820)
|...|+.+.|.+-.+.+... .+|..|.++|.+.+++|-|.-.+..|.... -.++ ..-.....
T Consensus 738 yvtiG~MD~AfksI~~IkS~--------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD--------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh--------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 45567777776655443322 266677777777777776666655553210 0111 11122233
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
.....|.+++|..+|++.+. |..|=..|...| .+++|+++-+.--+. . =..||.....-+-..++.+
T Consensus 809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g-~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQG-MWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcc-cHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHH
Confidence 34456777777777776664 223334445555 677776665543221 1 1234444445555556666
Q ss_pred HHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHH
Q 003433 317 AARNLFNEMV----------HRG---------IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMID 377 (820)
Q Consensus 317 ~A~~~~~~~~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 377 (820)
.|++.|++.- ... -..|...|.-....+-..|++|.|+.+|....+ |-++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 6666655321 110 012344444455555567777777777776543 556667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..|-.|+.++|-.+-++ .-|......|...|-..|++.+|...|.+..
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777777777766554 2355666667778888888888877776653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1e-06 Score=97.35 Aligned_cols=421 Identities=14% Similarity=0.034 Sum_probs=258.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
+...|+..|-+..+.... -...|..|...|+..-+...|.+.|++..+.+ ..|...+..+.+.|++..++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 567888888877775322 34578889999988889999999999998864 3467788899999999999999999844
Q ss_pred HchhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 359 EMPAKNIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437 (820)
Q Consensus 359 ~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 437 (820)
..-+.... .-...|....-.|.+.++..+|+..|+...... +.|...|..++.+|.+.|++..|+++|.+..... +.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 33332100 112234445556788899999999999988776 6678889999999999999999999998887643 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CC
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADC------VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AG 504 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~ 504 (820)
+...-.-..-..+..|.+.+|...+..++... ..--..++..+...+.-.|-..+|..+|+..++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 22332333445677899999999888775431 111223333343334444444444444444332 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMC 584 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~ 584 (820)
..-+...|-.+.++ ..+|-... .. .|+......|..-+-..+....- +++.-+.+.+.....+
T Consensus 709 ~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~-d~l~Lg~~c~~~hlsl---- 771 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKN-DLLFLGYECGIAHLSL---- 771 (1238)
T ss_pred hhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcch-hHHHHHHHHhhHHHHH----
Confidence 12233344333332 22333222 00 12222222222212222211000 0000000000000000
Q ss_pred ccCchhhhhhccch-HHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 003433 585 SQDDKDVQEAGRTD-NQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFED 663 (820)
Q Consensus 585 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~e 663 (820)
. .....| |-.++.|...-.. |.. ..+...|+..+.+.++..- -|..+|++|+-+ +.-|++.-
T Consensus 772 -----~--~~~~~WyNLGinylr~f~~l--~et------~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~ 834 (1238)
T KOG1127|consen 772 -----A--IHMYPWYNLGINYLRYFLLL--GET------MKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVAC 834 (1238)
T ss_pred -----h--hccchHHHHhHHHHHHHHHc--CCc------chhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhh
Confidence 0 001222 2223333322111 111 1134568889998877433 377888887766 77799999
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 664 ASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 664 A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
|...|-+.+..+|...+++.++.+-+ ...+.+.|...|.++..++|.+ ...|--.+-+....|+.-++..+|..
T Consensus 835 aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n-l~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 835 AQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN-LVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchh-hHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999888998888887776544 6789999999999999999965 55577777788889999999888865
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-10 Score=84.01 Aligned_cols=50 Identities=44% Similarity=0.796 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 507 ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 507 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57777777777777777777777777777777777777777777777754
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-07 Score=89.06 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhh
Q 003433 696 QALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (820)
+|.+-+++.+++- -.+..+.+|+||+..++..+++.|+...+-...+..|
T Consensus 401 ~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~W 450 (459)
T KOG4340|consen 401 KAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVW 450 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhccccee
Confidence 3444455554432 2347889999999999999999998766544333344
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-08 Score=102.19 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=143.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccC-ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKN-DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
....++.+.++.-+.+++......+ .....+..++..|.+.|+.++|...|+++++..+ .+..+|+.+...|...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCH
Confidence 3344567778888877775432222 2245677788888888888888888888888754 3678888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 324 (820)
++|++.|++..+.... +..+|..+..++...| ++++|++.|++..+.. |+..........+...++.++|...|.+
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g-~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGG-RYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 8888888888874432 4667777777788888 8888888888888753 3322222222234456778888888866
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh---CCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA---KNIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
..... .++...+ .+. +...|+..++ +.++.+.+ ..+. ....+|..+...+.+.|++++|+..|++....
T Consensus 191 ~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55432 2222221 222 2334444333 23333321 1110 12346777777777778888888887777766
Q ss_pred C
Q 003433 399 G 399 (820)
Q Consensus 399 ~ 399 (820)
.
T Consensus 266 ~ 266 (296)
T PRK11189 266 N 266 (296)
T ss_pred C
Confidence 4
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=82.86 Aligned_cols=49 Identities=47% Similarity=0.830 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=97.51 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNG-VQPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
..+.++..+.+++... ..|+ ...|..+...+...|+.++|...|++.++.. +.+...|+.+...+...|++++|++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444555555555321 1111 2335555555556666666666666655543 2245555666666666666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
.|++..+.... +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|+..|.+.
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 66665554322 3445555555555566666666666655554 222211111111223344555666555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-05 Score=84.88 Aligned_cols=17 Identities=0% Similarity=-0.175 Sum_probs=10.9
Q ss_pred HHHHhhcCchHHHHHHH
Q 003433 720 TDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 720 ~~~~~~~g~~~~A~~~~ 736 (820)
+.+|-+.++|....++-
T Consensus 1511 Aylyk~n~rW~qSiel~ 1527 (1666)
T KOG0985|consen 1511 AYLYKGNNRWKQSIELC 1527 (1666)
T ss_pred HHHHhccchHHHHHHHh
Confidence 34566677787776663
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-07 Score=87.55 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...+.-+|.+.|++..|..-++++++.+ |.+..++..+...|-+.|+.+.|.+.|+++++..+. +-.+.|.....+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 3334445555555555555555555543 223334445555555555555555555555544322 344445555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 318 (820)
|..|++++|...|++......-+ --..+|..+.-+..+.|+.+.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~-----------------------------------~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYG-----------------------------------EPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCC-----------------------------------CcchhhhhhHHHHhhcCCchhH
Confidence 55555555555555544321111 1123444444444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 319 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
...|++.++.. +....+.-.+.....+.|++-.|...++.....+. ++..+....|..-...|+-+.+.++=.++..
T Consensus 159 ~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 159 EEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554442 11233344445555555555555555555544433 3444444455555555555555444444433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-07 Score=88.07 Aligned_cols=198 Identities=16% Similarity=0.030 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
.|.-+|...|+...|.+-+++.++.+ +-+..++..+...|.+.|+.+.|.+.|++.++.. +.+..+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 34445555555555555555555543 3334455555555555555555555555555443 334445555555555555
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCV-SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
++++|...|++....-. .--..+|..+..+..+.|+.+.|...|++.++.... ...+.-.+.....+.|++..|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555544311 111234555555555555555555555555554332 2334444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 533 DEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 533 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
++....+. ++....-..|..-...|+.+.+...-.+....+|
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 55554432 4555444444444555555554444333333333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.8e-06 Score=91.97 Aligned_cols=205 Identities=14% Similarity=0.142 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..+|..+..+-.+.|.+.+|++-|-+.. |...|..+++...+.|.+++-.+++...++..-.|... +.||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 4566777777777777777776665432 55667777777777777777777666655554334332 456666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|++.+++.+-.+++ .-||......+.+-|...|.++.|.-+|.. +..|..|...+...|.+..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence 77777665544332 136666666666667777777766666553 33456666666667777766
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
...-++. .+..||..+..+|...+.+.-| +|-...+.-...-...|+.-|...|-+++-+.+++.+++.
T Consensus 1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 6554443 3566777777777766655433 2333333344555667777777778888777777766654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-06 Score=91.06 Aligned_cols=192 Identities=18% Similarity=0.322 Sum_probs=134.3
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
+.+.....++.+|+.+++.+..... -..-|..+.+-|...|+++.|.++|.+.- .++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566788888888888776532 23346777788888899999988886532 355677888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
+.|.++-.+.. |.......|.+-..-+-+.|++.+|.++|-.+- .|+. -|.+|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 98888776654 223345566666677778888888888876543 3443 467888888888888776653
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHh
Q 003433 501 KQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 501 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.- ..-..|...+..-|-..|++..|...|-+..+ |.+-+++|-..+.+++|.++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 21 11234566677788888999999888876653 55666777777777777654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-07 Score=94.73 Aligned_cols=88 Identities=10% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhc
Q 003433 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDI--FTYNTLLDAICKG 347 (820)
Q Consensus 271 ~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~--~~~~~ll~~~~~~ 347 (820)
..+...| ++++|...+++.++.... +...+..+..++...|++++|+..+++..+... .++. ..|..+...+...
T Consensus 122 ~~~~~~G-~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAG-QYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcC-CHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 3444444 555555555555544222 233444444455555555555555554444311 0111 1233344444455
Q ss_pred CCHHHHHHHHHHc
Q 003433 348 AQMDLAFEIMAEM 360 (820)
Q Consensus 348 g~~~~A~~~~~~m 360 (820)
|++++|+.+|++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-05 Score=87.58 Aligned_cols=328 Identities=15% Similarity=0.213 Sum_probs=187.0
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH--------cccccCChhHHHHHHHHHHHhcCChHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK--------REERKNDQGKLASAMISILGRLGKVDL 211 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (820)
.+.+.+++++.. ..+...|..+.+.+.+.++++-|.-++..|.. +....++. .-..+...-...|.+++
T Consensus 742 G~MD~AfksI~~-IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e--~eakvAvLAieLgMlEe 818 (1416)
T KOG3617|consen 742 GSMDAAFKSIQF-IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE--DEAKVAVLAIELGMLEE 818 (1416)
T ss_pred ccHHHHHHHHHH-HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc--hhhHHHHHHHHHhhHHH
Confidence 344444544431 12344699999999999999988877765532 11111211 11233444567899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH-
Q 003433 212 AKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDM- 290 (820)
Q Consensus 212 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m- 290 (820)
|..+|++..+ |..|=..|...|.+++|+++-+.=-...+ -.||.....-+-..+ +.+.|++.|++.
T Consensus 819 A~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~-Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 819 ALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARR-DIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhc-cHHHHHHHHHhcC
Confidence 9999998865 33455567788999999988775433222 234444444444455 677777776643
Q ss_pred ---------HHCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 291 ---------LRNGV---------QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 291 ---------~~~g~---------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
+...+ ..|...|.-....+-..|+.|.|+.+|....+ |..+++..|-.|+.++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 11110 12444455555556678888888888877654 4455566666666666
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------CCCCCCHHHH---------------
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF----------LGIGLDRVSY--------------- 407 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~~~~~d~~~~--------------- 407 (820)
|-++-++-. |....-.|.+.|-..|++.+|+..|.+... +++ +...+
T Consensus 957 Aa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aA 1028 (1416)
T KOG3617|consen 957 AARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAA 1028 (1416)
T ss_pred HHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHH
Confidence 666655432 445555566666666666666666654421 111 11111
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 408 ----------NTVLSIYAKLGRFEEALLVCK--------EMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 408 ----------~~li~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
..-+..|-+.|.+.+|+++-= +++.. .-..|+...+--.+.++...++++|..++-...+
T Consensus 1029 rYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1029 RYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 112234555566665554421 11112 2234666677677777777777777766654332
Q ss_pred ----------CC----------------CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 468 ----------DC----------------VSPNL----LTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 468 ----------~~----------------~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
++ -.|+. .....+...|.++|.+..|-+-|.+.
T Consensus 1109 ~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1109 FSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 11 12222 23445667778888888877766554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-06 Score=81.47 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=93.6
Q ss_pred hcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 425 (820)
-.|+...|++....+++..+- |...|..-..+|...|++..|+.=++...+.. .-+..++--+-..+...|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHH
Confidence 344444444444444443222 44444444455555555555555444444332 2233344444444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
..++.++.+ ||....... | ..+.+..+.++.|.+ ....+++.++++..+...+..+
T Consensus 245 ~iRECLKld--pdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 245 EIRECLKLD--PDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred HHHHHHccC--cchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCC
Confidence 555554432 333222111 1 111122222222221 1223445555555555554432
Q ss_pred CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 506 KADVV---LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 506 ~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
.-..+ .+..+-.++...|++.+|++...+.++ +.|| ..++.--..+|.-..+++.|++-|+++.+.++.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 21122 223334445556666666666666665 3444 446666666666666666666666666655443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-06 Score=94.38 Aligned_cols=202 Identities=12% Similarity=0.039 Sum_probs=123.9
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT-VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
+....+..+...+...|+.+.+.+.+......... .+ ..........+...|++++|.+++++..+.... +...+..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH
Confidence 34455666666666677777766666665543221 12 222333344566778888888888887764322 3333332
Q ss_pred HHHHHH----cCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 269 VIDACG----KGGVDFKHVVEIFDDMLRNGVQPD-RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA 343 (820)
Q Consensus 269 ll~~~~----~~g~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 343 (820)
...+. ..+ ....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 83 -~~~~~~~~~~~~-~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 83 -HLGAFGLGDFSG-MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred -hHHHHHhccccc-CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 11221 223 34444444443 1112233 3344456667788888999999998888864 3456677888888
Q ss_pred HHhcCCHHHHHHHHHHchhCCCC-CCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNIS-PNV--VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
|...|++++|+..+++....... ++. ..|..+...+...|++++|+.++++....
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888888887764321 222 34556777888888888888888887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-05 Score=82.07 Aligned_cols=421 Identities=11% Similarity=0.118 Sum_probs=265.9
Q ss_pred HHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003433 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (820)
Q Consensus 146 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (820)
-+.++.++.+.++|..||+.+..+ ..+++++.++++... .|....+|..-+....+.++++..+++|.+.+.. .
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~---FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--v 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV---FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--V 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc---CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--H
Confidence 345666778889999999988777 999999999999987 3555678999999999999999999999999775 3
Q ss_pred CCHHHHHHHHHHHHh-cCChhHH----HHHHHHH-HhCCCCC-CHHHHHHHHHHH---------HcCCCCHHHHHHHHHH
Q 003433 226 NTVYAFSALISAYGR-SGYCQEA----ISVFNSM-KRYNLKP-NLVTYNAVIDAC---------GKGGVDFKHVVEIFDD 289 (820)
Q Consensus 226 ~~~~~~~~li~~~~~-~g~~~~A----~~~~~~m-~~~~~~p-~~~~~~~ll~~~---------~~~g~~~~~A~~~~~~ 289 (820)
.+...|...+..-.+ .|+...+ .+.|+-. .+.|+.+ +-..|+..+.-+ ..+. +.+...++|++
T Consensus 84 LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q-RI~~vRriYqr 162 (656)
T KOG1914|consen 84 LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ-RITAVRRIYQR 162 (656)
T ss_pred hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH-HHHHHHHHHHH
Confidence 468888887775443 3333332 2333333 2445443 333455555443 3334 56778888888
Q ss_pred HHHCCCCC------CHHHHHHHHHHH-------HhCCCHHHHHHHHHHHHH--CCCCCCHH---------------HHHH
Q 003433 290 MLRNGVQP------DRITFNSLLAVC-------SRGGLWEAARNLFNEMVH--RGIDQDIF---------------TYNT 339 (820)
Q Consensus 290 m~~~g~~p------~~~~~~~ll~~~-------~~~g~~~~A~~~~~~~~~--~g~~~~~~---------------~~~~ 339 (820)
++..-+.- |-..|..=|+.. -+...+-.|.++++++.. .|+..+.. .|-.
T Consensus 163 al~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n 242 (656)
T KOG1914|consen 163 ALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKN 242 (656)
T ss_pred HhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHH
Confidence 87642210 112222222211 123456677777777753 24322222 2434
Q ss_pred HHHHHHhcCC------HH--HHHHHHHH-chhCCCCCCHHHHH-----HHHHHHHHcCC-------HHHHHHHHHHHHHC
Q 003433 340 LLDAICKGAQ------MD--LAFEIMAE-MPAKNISPNVVTYS-----TMIDGYAKAGR-------LDDALNMFSEMKFL 398 (820)
Q Consensus 340 ll~~~~~~g~------~~--~A~~~~~~-m~~~g~~p~~~~~~-----~li~~~~~~g~-------~~~A~~~~~~m~~~ 398 (820)
+|..=-.++- .- ...-++++ |.-.+..|++.-.- ..-+.+...|+ -+++..+++.....
T Consensus 243 ~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~ 322 (656)
T KOG1914|consen 243 WIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG 322 (656)
T ss_pred HHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 4433222111 00 11111222 11223333332111 11123334444 45566666665543
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 003433 399 GIGLDRVSYNTVLSIYAKLG---RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NL 474 (820)
Q Consensus 399 ~~~~d~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~ 474 (820)
-..-+..+|..+.+.--..- ..+....+++++...-...-..+|..+++...+..-+..|+.+|.+..+.+..+ ++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 22334444544443221111 255566667666543323334678888888889999999999999999988666 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV--VTYNSIID 552 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~ 552 (820)
..+++++.-|| .++.+-|.++|+--++.- .-+..--...++.+...|+-..|..+|++.+..++.||. .+|..+|+
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 89999999888 578899999999866542 224455567788899999999999999999988777765 49999999
Q ss_pred HHhhcCchhhhHHhHHHHhhhhh
Q 003433 553 AFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
-=..-|++...+++.++....++
T Consensus 481 yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcc
Confidence 88999999999888777666555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-06 Score=85.40 Aligned_cols=325 Identities=15% Similarity=0.123 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM---IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY-NTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~-~~li 411 (820)
-..-|...+...|++.+|+.-|...++. |...|.++ ...|...|+-..|+.=|.+.++. +||-..- ..-.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3344455555555555555555555543 22223222 33455555555555555555544 4443221 1122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (820)
..+.+.|.+++|..=|+.+++.. |+..+ ...++.+.-..++-.. ....+..+.-.|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCchh
Confidence 34445555555555555555432 11100 1111111111111111 112233445578888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
.|+.....+++..+ .|...|..-..+|...|++..|+.-++..-+.. ..+..++..+-..+...|+.+.++..+.+.+
T Consensus 173 ~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888888888653 478888888888888998888888777776542 2244466666777788888888888888888
Q ss_pred hhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC--HHH--
Q 003433 572 GKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN--VVT-- 647 (820)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd--~~~-- 647 (820)
+.+|+... |.- .|..+-+.-..+...+ .....+++.++++..+..++ ..|. .+.
T Consensus 251 KldpdHK~----Cf~----------~YKklkKv~K~les~e------~~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~ 308 (504)
T KOG0624|consen 251 KLDPDHKL----CFP----------FYKKLKKVVKSLESAE------QAIEEKHWTECLEAGEKVLK--NEPEETMIRYN 308 (504)
T ss_pred ccCcchhh----HHH----------HHHHHHHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHh--cCCcccceeee
Confidence 88876531 110 1111111111110000 01223466677777777766 3343 222
Q ss_pred -HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCc
Q 003433 648 -FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 648 -~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
+..+-..|...|++-||++...+++..+|++..++..-.-++ ....+++|+.-|+++.+.++++
T Consensus 309 ~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 309 GFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred eeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 334445556778999999999999999998877665443344 3567899999999999988865
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-06 Score=104.29 Aligned_cols=379 Identities=11% Similarity=-0.026 Sum_probs=235.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
++......+...|++.+|...+..+... ..-..............|+++.+..+++.+.......+..........+.
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 4445556666677777666544433111 00011122233445567888888888776632111112222233344445
Q ss_pred cCCCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 003433 275 KGGVDFKHVVEIFDDMLRNGV------QPD--RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLD 342 (820)
Q Consensus 275 ~~g~~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~ 342 (820)
..| +++++..++......-- .+. ......+...+...|++++|...+++..+.-...+ ....+.+..
T Consensus 421 ~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 667 89999999988764311 111 11222334456789999999999999876421122 234566777
Q ss_pred HHHhcCCHHHHHHHHHHchhC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHH
Q 003433 343 AICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTV 410 (820)
Q Consensus 343 ~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-d~~~~~~l 410 (820)
.+...|++++|...+++.... |. .....++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 788899999999999887642 11 111234566677889999999999999886542 211 1 22345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-----HHH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSG--IRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PNLLTY-----STL 480 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l 480 (820)
...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.+.+....... .....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 677788899999999998875421 112 2344555677888999999999999887542101 111111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNV-VTYNSIID 552 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~ll~ 552 (820)
+..+...|+.+.|.+.+........... ...+..+..++...|+.++|...+++.... |...+. .++..+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 2445568999999998877654221111 112456777889999999999999998753 333332 35666777
Q ss_pred HHhhcCchhhhHHhHHHHhhhhhh
Q 003433 553 AFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
++.+.|+.++|...+.++++....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 889999999999999999987643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-06 Score=102.36 Aligned_cols=339 Identities=12% Similarity=-0.006 Sum_probs=219.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCHH--HHHHHH
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNL------KPNLV--TYNAVI 270 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~p~~~--~~~~ll 270 (820)
....+...|+++.+..+++.+.......+..........+...|++++|..+++.....-- .+... ....+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 3445566788888777776652211111222334555666788999999999988754210 11111 112223
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 003433 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRGGLWEAARNLFNEMVHR----GI-DQDIFTYNTLL 341 (820)
Q Consensus 271 ~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----g~-~~~~~~~~~ll 341 (820)
..+...| ++++|...+++....-...+. ...+.+...+...|++++|...+++.... |. .....++..+.
T Consensus 460 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDG-DPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 3455778 999999999998764222222 23455666778899999999999988753 11 11134556677
Q ss_pred HHHHhcCCHHHHHHHHHHchhC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHH
Q 003433 342 DAICKGAQMDLAFEIMAEMPAK----NIS--P-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG--IGL--DRVSYNTV 410 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~--d~~~~~~l 410 (820)
..+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7889999999999998876542 211 1 22345566677888899999999998876531 112 23345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSGIRK-DAVTY-----NALLGGYGKQGKYDEVRRMFEQMKADCVSPNL---LTYSTLI 481 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li 481 (820)
...+...|+.++|...+++.....-.. ....+ ...+..+...|+.+.|...+............ ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 678889999999999998875421011 11111 11234456689999999998775542211111 1234667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQA----GLKA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
.++...|+.++|...+++.... |... ...++..+..++.+.|+.++|...+.++++.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888999999999999988653 3222 2346677788899999999999999999875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00023 Score=78.83 Aligned_cols=224 Identities=17% Similarity=0.161 Sum_probs=153.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHH--HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMI--SILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY 243 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 243 (820)
....+++.+|++.....++.. |.. .+..++ -.+.+.|+.++|..+++.....+.. |..+...+-..|...|+
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 345678999999999998874 332 222333 3356889999999888887666544 88899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----------
Q 003433 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG---------- 313 (820)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---------- 313 (820)
.++|..+|++... ..|+......+..+|.+.+ ++.+-.+.--+|-+. ++-+.+.|=+++..+...-
T Consensus 93 ~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQ--KYPSEELLYHLFMAYVREK-SYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999999986 3577777778888888888 776655555555543 2324555555555543321
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 314 LWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMA-EMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
-..-|.+.++.+++.+ ...+..-.......+...|++++|.+++. ...+.-..-+...-+--++.+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1345777777777664 22222222233445566788999999984 333332333455556678888899999999999
Q ss_pred HHHHHHCC
Q 003433 392 FSEMKFLG 399 (820)
Q Consensus 392 ~~~m~~~~ 399 (820)
-.++...|
T Consensus 249 ~~~Ll~k~ 256 (932)
T KOG2053|consen 249 SSRLLEKG 256 (932)
T ss_pred HHHHHHhC
Confidence 99998885
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.3e-07 Score=97.11 Aligned_cols=235 Identities=16% Similarity=0.117 Sum_probs=160.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.-+.+.|++.+|.-.|+..+... +-+...|.-|.......++-..|+..+++.++..+. |......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34567777888887887777663 445667777777777777777777777777776543 6677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHH
Q 003433 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFG 606 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (820)
+|++.+++-+.... .. ..+..+ ...++.+.. + .+
T Consensus 371 ~Al~~L~~Wi~~~p--~y---~~l~~a-~~~~~~~~~----------------------~-s~----------------- 404 (579)
T KOG1125|consen 371 QALKMLDKWIRNKP--KY---VHLVSA-GENEDFENT----------------------K-SF----------------- 404 (579)
T ss_pred HHHHHHHHHHHhCc--cc---hhcccc-CccccccCC----------------------c-CC-----------------
Confidence 77777777765421 11 000000 000100000 0 00
Q ss_pred HHHHHHhcCCccchhhhhhHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH
Q 003433 607 QLVAEKAGQGKKENRCRQEILCILGVFQKM-HKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (820)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m-~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 685 (820)
....+.....++|-++ ...+.++|..+...|+-.|.-.|.+++|...|+.++..+|.++..++.+
T Consensus 405 --------------~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 405 --------------LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred --------------CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 0000112233455444 3455445666667888889999999999999999999999999999998
Q ss_pred Hhcccc-chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 686 LMGYRD-NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 686 ~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
...+.. ....+|+..|.+++++.|.-.. ....|+-.|...|-|.||.+++.+++....
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 877754 4678999999999999997644 466688899999999999999988765443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-06 Score=86.00 Aligned_cols=211 Identities=10% Similarity=0.068 Sum_probs=150.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
+-..+...++.++|+.+...++..+ |.+..+++....++.+.| ++++++..+++++..++. +..+|+....++.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln---P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN---PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence 3444566778999999999999884 555567877777888888 679999999999887544 67788887777777
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC-
Q 003433 241 SGYC--QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG---GL- 314 (820)
Q Consensus 241 ~g~~--~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~- 314 (820)
.|+. ++++.+++++.+...+ |..+|+...-++...| +++++++.++++++.++. |...|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~-~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLG-GWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 7763 6788888888876554 7888988888888888 899999999999987665 666676666555444 22
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 315 ---WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG----AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 315 ---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
.++......+++... +.|...|+.+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 245666665666653 34566777777777662 3345576776666554332 55566666666664
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-07 Score=93.34 Aligned_cols=256 Identities=15% Similarity=0.086 Sum_probs=162.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV 278 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 278 (820)
.+..+.+.|++.+|.-.|+.+++.++. ++.+|..|......+++-..|+..++++.+.... |....-.|.-.|...|
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg- 367 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG- 367 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh-
Confidence 344566777788888888877776544 6778888888888888777888888887774432 5566666667777777
Q ss_pred CHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCC
Q 003433 279 DFKHVVEIFDDMLRNGVQ--------PDRITFNSLLAVCSRGGLWEAARNLFNEMV-HRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
.-..|+.+++..+...++ .+..+-.. ..+.....+....++|-++. ..+...|..++..|.-.|.-.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 566777777777654211 00000000 12222333444455554443 34444677777778778888888
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++.|+..|+..+...+. |...||-|...++...+.++|+..|.+.++. .|.- .+...|.-.|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 88888888887776433 6677888888888888888888888888776 4442 333445556777888888877776
Q ss_pred HHHH---C------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 429 EMES---S------GIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 429 ~~~~---~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
..+. . ...++...|.+|=.++.-.++.|.+.+..
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 5432 1 11123467777766666666666544443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-05 Score=74.48 Aligned_cols=261 Identities=15% Similarity=0.101 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA- 233 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 233 (820)
+.-....+...|.+..++..|..+|++.-... |.....-.--...+.+.+.+.+|+++...|... ++...-..
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 33345556666666667777777776665542 222222222345556666777777766666432 11111111
Q ss_pred -HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 234 -LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 234 -li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
-....-..+++-.+..+.+.....| +..+.+...-...+.| +++.|.+-|+...+-+---....|+..+. ..+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg-qyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~ 191 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG-QYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSS 191 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc-cHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhh
Confidence 1112223456666666666655321 3333333334445666 67777777776665432223445554333 3455
Q ss_pred CCHHHHHHHHHHHHHCCCCC-------------CHH---------------HHHHHHHHHHhcCCHHHHHHHHHHchhC-
Q 003433 313 GLWEAARNLFNEMVHRGIDQ-------------DIF---------------TYNTLLDAICKGAQMDLAFEIMAEMPAK- 363 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~-------------~~~---------------~~~~ll~~~~~~g~~~~A~~~~~~m~~~- 363 (820)
|+++.|++...+++++|+.. |+. .+|.-...+.+.|+++.|.+.+-.|.-+
T Consensus 192 ~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 192 RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 66777777777776665321 110 1122222344556666666666666432
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 364 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
....|.+|...+.-. --.+++.+..+-+.-+.+.. +-...||..++-.||++.-++-|-.++-
T Consensus 272 E~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 272 EEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 122344554443211 11233444444444444432 2334566666666666666666655553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-05 Score=82.68 Aligned_cols=206 Identities=10% Similarity=0.068 Sum_probs=148.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC--H
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD--F 280 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~--~ 280 (820)
...++.++|+.+.++++...+. +..+|+....++.+.| +++++++.++++.+...+ +..+|+.....+.+.+ . .
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~-~~~~ 124 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG-PDAA 124 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC-chhh
Confidence 3456778899999999887543 6678888888888888 679999999999986554 5667776655555666 4 3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH----HHH
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG---AQM----DLA 353 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~---g~~----~~A 353 (820)
++++.+++++++...+ |..+|+....++...|+++++++.++++++.+. .|...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHH
Confidence 6788899899887655 778888888888889999999999999998763 4667777776666554 222 456
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKA----GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK 416 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~ 416 (820)
++...+++...+. |...|+.+...+... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 6666666665443 677788877777663 34456777777766543 4456667777777764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-07 Score=93.30 Aligned_cols=80 Identities=25% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY-DEVRRMFE 463 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~ 463 (820)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ +.+..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 13344444444444444444444444444443322 22333333344333333433 33334444
Q ss_pred HHH
Q 003433 464 QMK 466 (820)
Q Consensus 464 ~m~ 466 (820)
++.
T Consensus 261 qL~ 263 (290)
T PF04733_consen 261 QLK 263 (290)
T ss_dssp HCH
T ss_pred HHH
Confidence 433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.7e-06 Score=93.71 Aligned_cols=245 Identities=12% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NIS---PNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
|++.+... +.....|-..|....+.++.++|++++++.+.. ++. --.-.|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 345678888999999999999999999988753 111 0134688888888888888899999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHH
Q 003433 398 LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP--NLL 475 (820)
Q Consensus 398 ~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~ 475 (820)
. .---..|..|...|.+.+.+++|.++|+.|.+.- .....+|...+..+.+.++-+.|..++.+.++.- +- ...
T Consensus 1526 y--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~ 1601 (1710)
T KOG1070|consen 1526 Y--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVE 1601 (1710)
T ss_pred h--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHH
Confidence 6 2234678899999999999999999999998753 4678899999999999999999999999987751 22 344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSIIDA 553 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~ 553 (820)
...-.++.-.+.|+.+.+..+|+.++...++ -...|+.+|++-.+.|+.+.+..+|++.+..++.|-.. .|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 4555666777899999999999999987655 67899999999999999999999999999988877654 56666665
Q ss_pred HhhcCchhhhHHhHHHHhh
Q 003433 554 FGRSATTECTVDDVERDLG 572 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~ 572 (820)
=-+.|+-+.+..+=.+|.+
T Consensus 1681 Ek~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1681 EKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHhcCchhhHHHHHHHHHH
Confidence 5566665444333334443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-07 Score=90.66 Aligned_cols=148 Identities=19% Similarity=0.208 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCC
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY----GKQGK 454 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 454 (820)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .....
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l-~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSIL-TQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH-HHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH-HHHHHHHHHHHhCchh
Confidence 34445555555554321 233444444555555555555555555554432 22211 1122211 11224
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV-ESAVSLLD 533 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 533 (820)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+.. +..+...+|.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 55555555554433 2344555555555555555555555555555444322 444444445444555544 33444444
Q ss_pred HHHH
Q 003433 534 EMTK 537 (820)
Q Consensus 534 ~m~~ 537 (820)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-05 Score=91.65 Aligned_cols=222 Identities=14% Similarity=0.086 Sum_probs=146.4
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC--hhHHHHHHHHHHHhcCChHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFET 218 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (820)
.+++..+.+...+.+.-.|...+....+.++.++|++++++++..-..... -..+|.++++....-|.-+...++|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444445445555556777777777788888888888888764322111 223666777777777777777788888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC-
Q 003433 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP- 297 (820)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p- 297 (820)
+.+.. ..-.+|..|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.. +-+.|..++.++++.-.+-
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~n-e~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQN-EAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhccc-HHHHHHHHHHHHHhhcchhh
Confidence 87642 12446777888888888888888888888753 2246667777777777777 6777777877777642211
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCC
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (820)
........+..-.+.|+.+.++.+|+..+... +--...|+.++++-.+.|+.+.++.+|+++...++.+
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 22333444444566777777777777777652 3345677777777777777777777777777765543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-07 Score=82.60 Aligned_cols=111 Identities=11% Similarity=0.083 Sum_probs=95.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 631 GVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 631 ~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.+|++.++ ++|+. +..++.++...|++++|...|+.++..+|.+..+..++...+ ..|++++|+..|+++++++|
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 47777776 66775 456788999999999999999999999999988887776655 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
.+ +..+..++.+|...|++++|+..+..+.+....+
T Consensus 90 ~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 90 SH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 65 7779999999999999999999999998776543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=81.01 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=63.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV--YAFS 232 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 232 (820)
.++.+..++..+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|...|+++++..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 35556667777888888888888888887764332222345666777888888888888888888765432111 2444
Q ss_pred HHHHHHHhc--------CChhHHHHHHHHHHh
Q 003433 233 ALISAYGRS--------GYCQEAISVFNSMKR 256 (820)
Q Consensus 233 ~li~~~~~~--------g~~~~A~~~~~~m~~ 256 (820)
.+..++.+. |+.++|++.|+++.+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 555555443 445555555555544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.9e-06 Score=90.34 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=171.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.-..+...+...|-...|+.+|++.. .|..+|.+|+..|+..+|..+..+..++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 34567788888999999999998765 4777889999999999999998888875 889999999998887
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
..--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.++++.|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765321 22223333445789999999998877653 4456788888888889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 496 IFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 496 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
.|..-....+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+-..|...+-...+.|.+++|++.+.+.+...
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99988875433 57789999999999999999999999999876 3355567777777788899999988887766554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-07 Score=61.33 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 639 LKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 639 ~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
.|+.||.+||++|+++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3799999999999999999999999999999983
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0045 Score=69.01 Aligned_cols=217 Identities=15% Similarity=0.149 Sum_probs=103.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
..+++.+|+...+++.+.. ||.. |..++.++ .+.| ..++|..+++.....+.. |..|...+-.+|...++.++
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 4566666666666665432 3322 23333333 4555 566666666655544444 66666666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR--------- 384 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------- 384 (820)
|..+|++.... .|+......+..+|.+.+.+.+ |+++++...+ +...+.++++.+.+.-.
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-----~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-----RAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-----ccchHHHHHHHHHHhccCCcccccch
Confidence 66666666654 2445555556666666555443 4444443322 44455555555444321
Q ss_pred -HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 385 -LDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCK-EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (820)
Q Consensus 385 -~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (820)
..-|.+.++.+.+.+-+.. ..-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence 1223333344433320111 1111111122334455555555552 222222223333334444555555555555555
Q ss_pred HHHHHHC
Q 003433 462 FEQMKAD 468 (820)
Q Consensus 462 ~~~m~~~ 468 (820)
-.++...
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 5555544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-05 Score=74.85 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=104.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY 455 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 455 (820)
+..|...|+++.+....+.+.. +. ..+...++.++++..++..++.. +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3457777777776544432211 10 01122566677777777776665 67788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGL--YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
++|...|++..... +.+...+..+..+ |...|+ .++|.+++++..+.++. +...+..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887763 4466777777775 356666 48888888888887654 7778888888888888888888888
Q ss_pred HHHHHC
Q 003433 533 DEMTKE 538 (820)
Q Consensus 533 ~~m~~~ 538 (820)
+++++.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 888875
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-06 Score=89.12 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=176.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..+...+.+.|-...|..+|+++.. |--.+.+|+..|+.++|..+..+-.++ +||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3456678889999999999987653 667899999999999999999888874 67899999999988888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
--+++|.++++..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.+++..|.+.|
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8899999998865432 11222222345789999999999877655 566789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 463 EQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 463 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.+. -+...|...+....+.|.+++|++.+.++.+.
T Consensus 543 ~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 543 HRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9988752 34567999999999999999999999999999873 46777888888889999999999999998753
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-05 Score=79.52 Aligned_cols=186 Identities=13% Similarity=0.035 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR--VSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~--~~~~ 408 (820)
....+..++..+.+.|++++|...|+++...... +. ..++..+..+|.+.|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4555566666666666666666666666554221 00 134555666666666666666666666654211011 1333
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 409 TVLSIYAKL--------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 409 ~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
.+...+.+. |+.++|.+.|+.+.+.. +.+...+..+..... ... ... .....+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHHH
Confidence 344444433 44555555555554432 122222221111100 000 000 001134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLK--ADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...|.+.|++++|...++...+.... .....+..++.++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666554211 1234555566666666666666666655544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-07 Score=59.39 Aligned_cols=32 Identities=50% Similarity=0.932 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
|+.||..+||+||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=88.72 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALL 446 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 446 (820)
+...|..|+..|...+++++|.++.+...+. .|+. ..|-.+...+.+.++.+++..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3456777777777777777777777765554 3443 2333333355566665544443 2 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
.......++.....+...|.+. .-+...+..|..+|-+.|+.++|..+|+++++.++. |+...|.+...|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2222233332222333333332 223345555666666666666666666666665533 566666666666666 666
Q ss_pred HHHHHHHHHHH
Q 003433 527 SAVSLLDEMTK 537 (820)
Q Consensus 527 ~A~~~~~~m~~ 537 (820)
+|++++.+++.
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-05 Score=73.09 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=96.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|...|++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444455555666666655555543321 3444555556666666677777777666666544 56666677776677777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|..-|.+..+.. .-+...+|.|...|.-.|+.+.|..++......+.. |...-..|.-.....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777666666542 334455666666666667777777766666654432 5555556666666677777766655
Q ss_pred HHH
Q 003433 533 DEM 535 (820)
Q Consensus 533 ~~m 535 (820)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-05 Score=74.30 Aligned_cols=119 Identities=12% Similarity=0.148 Sum_probs=75.1
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-YAKLGR--FEEA 423 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~-~~~~g~--~~~A 423 (820)
.++.++++..+++..+.+.. |...|..+...|...|++++|+..|++..+.. +-+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666665555433 56666667777777777777777777666654 3455556666654 345555 3677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
.+++++..+.+ +.+..++..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777766655 445666666666677777777777777776665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00022 Score=68.04 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=135.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH
Q 003433 201 SILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF 280 (820)
Q Consensus 201 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 280 (820)
+-+.-.|.+..++..-+...... .++..-.-+-++|...|++...+. +++.. -.|.......+......-+ +.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~-~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELES-NK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcc-hh
Confidence 33444555555555444443221 233333344455555555443322 22211 1233333333333232233 22
Q ss_pred H-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 281 K-HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 281 ~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 359 (820)
+ ..-++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333444445444334333344444456778888888887776621 233333345556677778888888888
Q ss_pred chhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 360 MPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 360 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
|.+.. +..|.+.|..++.+ .+.+.+|.-+|++|-++- .|+..+.+-...++...|++++|..+++..+.+.
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 87752 56666666666654 346777888888877642 6777777777777777888888888888777665
Q ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 003433 436 RKDAVTYNALLGGYGKQGKY-DEVRRMFEQMKAD 468 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 468 (820)
..++.+...++-.-...|.. +-..+.+.++...
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 34555554444444444443 3334455555543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.6e-05 Score=84.73 Aligned_cols=171 Identities=13% Similarity=0.114 Sum_probs=80.0
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
+.+..++..|+..+...+++++|.++.+...+..+ .....|..++..+.+.++.+++..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 34444555555555555555555555554444321 1233333333344444544433333 1 1
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 270 IDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 270 l~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
+....... ++.-+..++..|... .-+...+..+..+|.+.|+.++|..+|+++++.. +.|+.+.|.+...|... +
T Consensus 90 l~~~~~~~-~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 90 IDSFSQNL-KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhccccc-chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 22222222 232222233333332 1133345555555556666666666666665554 33455555566655555 5
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
+++|++++.+.... |...+++.++.+++.++...
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 66666555554432 34444555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-05 Score=74.67 Aligned_cols=160 Identities=17% Similarity=0.106 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
..+...+...|+-+.+..+....... ...+....+.++....+.|++.+|+..|++..... .+|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44445555555555555555554332 22244455555666666666666666666655432 23555666666666666
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
| +++.|..-|.+..+.... +...++.|.-.+.-.|+.+.|..++......+ .-|..+-..|.-.....|++++|..+
T Consensus 148 G-r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 G-RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred c-ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6 666666666666554222 44455555555555666666666666555543 22455555556666666666666665
Q ss_pred HHHch
Q 003433 357 MAEMP 361 (820)
Q Consensus 357 ~~~m~ 361 (820)
...-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 54433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=71.42 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
..-.+..-+...|++++|.++|+-+...||.+...+.++.+.+ ..|+|.+|+..|.++..++|++ +..+..++.+|.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHH
Confidence 3557777888999999999999999999999998888888777 4899999999999999999955 7779999999999
Q ss_pred cCchHHHHHHHHHhhhhh
Q 003433 726 FGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~~~ 743 (820)
.|+.++|++-|+.+.+..
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0051 Score=64.65 Aligned_cols=432 Identities=12% Similarity=0.124 Sum_probs=217.9
Q ss_pred cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
.|.+...|+.|++-+..+ -+++++..++++... ++.....|..-|..-.+..+++....+|.+++..- -+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHH
Confidence 356677999999976655 999999999999886 55578899999999999999999999999998632 36777877
Q ss_pred HHHHHHcCCCCHH----HHHHHHHHHH-HCCCCCCH-HHHHHHHHH---------HHhCCCHHHHHHHHHHHHHCCCCCC
Q 003433 269 VIDACGKGGVDFK----HVVEIFDDML-RNGVQPDR-ITFNSLLAV---------CSRGGLWEAARNLFNEMVHRGIDQD 333 (820)
Q Consensus 269 ll~~~~~~g~~~~----~A~~~~~~m~-~~g~~p~~-~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~g~~~~ 333 (820)
.|.-..+...... ...+.|+-.+ +.|+.+-. ..|+..+.. |....+++..++++++++..-+..=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7765543321222 2233344333 34433322 224433332 3334466777888888876422111
Q ss_pred HHHHHHH------HHHH-------HhcCCHHHHHHHHHHchh--CCCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHH
Q 003433 334 IFTYNTL------LDAI-------CKGAQMDLAFEIMAEMPA--KNISPNVVTYSTMIDGYAKAGRLDD--ALNMFSEMK 396 (820)
Q Consensus 334 ~~~~~~l------l~~~-------~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m~ 396 (820)
...|+-. |+.. -+...+..|.++++++.. +|+..+..+ .-..|--++ ..+++...+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHH
Confidence 2222211 1100 112345556666665542 222211111 000011111 111121111
Q ss_pred H----CCCC-CCH--------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 397 F----LGIG-LDR--------VSYNTVLSIYAKLG-RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMF 462 (820)
Q Consensus 397 ~----~~~~-~d~--------~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 462 (820)
+ .++. .+. .+|...+..+.-.- -+-++-..+...-+ ++...++.=.....-+++..++
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~--------l~~~~~d~~~a~~~t~e~~~~y 316 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD--------LLTEKGDVPDAKSLTDEAASIY 316 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH--------HHHHhcccccchhhHHHHHHHH
Confidence 1 1111 000 11111111100000 00011111111000 0000000000111145566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 463 EQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 463 ~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+..++.-..-+..+|..+.+---.. ...+....++++++..-..--..+|..++..-.+..-++.|..+|.++.+.+
T Consensus 317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 6555432233444444443321111 1245555666666543222223456666666666666777778888887776
Q ss_pred CCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCcc
Q 003433 540 IRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKK 618 (820)
Q Consensus 540 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (820)
..+ ++.++++++.-+|. ++.+-|..+++-.++.+.+.+.+ ...-++.+..++
T Consensus 397 r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~y-----------------v~~YldfL~~lN--------- 449 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEY-----------------VLKYLDFLSHLN--------- 449 (656)
T ss_pred CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHH-----------------HHHHHHHHHHhC---------
Confidence 666 55566777765554 45666777777766666554311 122222222221
Q ss_pred chhhhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 619 ENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 619 ~~~~~~~~~~Al~~~~~m~~~~~~Pd~--~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
+-..|..+|++.+..++.||. ..|..+|+-=+.-|++..+.++-+.+.
T Consensus 450 ------dd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 450 ------DDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred ------cchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 222366688888777666653 457777777777788888777766554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=83.75 Aligned_cols=136 Identities=9% Similarity=0.008 Sum_probs=100.9
Q ss_pred cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 003433 189 KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA 268 (820)
Q Consensus 189 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 268 (820)
.+.+..++..|+.+..+.|++++|..+++.+....+ .+...+..++..+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 344456777788888888888888888888877643 35677777888888888888888888888775433 5556666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 269 VIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 269 ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
+..++.+.| ++++|..+|+++...+.. +..++..+...+...|+.++|...|++..+.
T Consensus 160 ~a~~l~~~g-~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 160 EAKSWDEIG-QSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHhc-chHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667777788 888888888888874332 4677777788888888888888888887765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.7e-05 Score=87.37 Aligned_cols=159 Identities=11% Similarity=0.095 Sum_probs=131.0
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
++.++++-...-...++.+..|.....+.|.+++|..+++.++... |++..+...++.++.+.+++++|+..+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 3334444444344457888899999999999999999999999884 6777889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~ 300 (820)
...+. +....+.+..++.+.|++++|.++|+++...+.. +..++..+..++...| +.++|...|++.++. ..+...
T Consensus 148 ~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G-~~~~A~~~~~~a~~~-~~~~~~ 223 (694)
T PRK15179 148 SGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRG-ALWRARDVLQAGLDA-IGDGAR 223 (694)
T ss_pred hcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh-hCcchH
Confidence 88644 7888999999999999999999999999984432 5788899999999999 999999999999875 233445
Q ss_pred HHHHHH
Q 003433 301 TFNSLL 306 (820)
Q Consensus 301 ~~~~ll 306 (820)
.|+.++
T Consensus 224 ~~~~~~ 229 (694)
T PRK15179 224 KLTRRL 229 (694)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=5e-05 Score=68.82 Aligned_cols=88 Identities=10% Similarity=-0.021 Sum_probs=34.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..++.+.|+.+
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 33333444444444444433332 2233333334444444444444444444443332 233333333444444444444
Q ss_pred HHHHHHHHHH
Q 003433 457 EVRRMFEQMK 466 (820)
Q Consensus 457 ~A~~~~~~m~ 466 (820)
+|+..|+..+
T Consensus 110 eAi~~~~~Al 119 (144)
T PRK15359 110 LAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.30 E-value=9e-06 Score=73.26 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=91.9
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd~-~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++.+. ..|+. .....++..+...|++++|.+.|+.+...+|.+..++..+...+ ..+++++|..+++++++.+|
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666665 56644 44678888999999999999999999998998877776665555 57899999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
.+ ...+..++.+|...|++++|..+++.+.+...
T Consensus 83 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 83 DD-PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 65 67788899999999999999999988876653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00076 Score=70.18 Aligned_cols=140 Identities=18% Similarity=0.150 Sum_probs=93.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.+...|++++|+..+..++..- +-|........+.+.+.++..+|.+.++++.... +-....+..+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 4456677777777777776652 3334444555567777777777777777777654 2225666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|+.+++..... .+-|...|..|..+|...|+..+|.....+ +|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 77777776655 355677777777777777777666654333 35567777777777777766
Q ss_pred C
Q 003433 538 E 538 (820)
Q Consensus 538 ~ 538 (820)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0015 Score=62.58 Aligned_cols=171 Identities=13% Similarity=0.143 Sum_probs=90.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 321 LFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGI 400 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 400 (820)
+.+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id- 167 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID- 167 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 33444443333333333334455666777777777766522 22233333344556666677777777776542
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 401 GLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLT 476 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 476 (820)
+..|.+.|..++.+ .+.+.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++.+.+. ..+..+
T Consensus 168 --ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 168 --EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred --hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 44555555554443 234666666666665432 5666666666666666666666666666666553 234455
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003433 477 YSTLIDVYSKGGLYKEA-MQIFREFKQ 502 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A-~~~~~~m~~ 502 (820)
...+|..-...|...++ .+...++..
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 54454444444443332 334444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00044 Score=71.88 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-RVSYNTVLSI 413 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~ 413 (820)
.......-.+...|++++|+..++.++..-. -|...+....+.+.+.|+.++|.+.++++... .|+ ......+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3344455566788999999999999887643 36667777889999999999999999999987 555 6677788899
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|.+.|+..+|+.+++...... +.|+..|..|..+|...|+..++..-..+ +|...|++++|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A 444 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQA 444 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHH
Confidence 999999999999999987765 78899999999999999998888766554 45668999999
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 003433 494 MQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~ 512 (820)
+..+....+.. +.+..+|
T Consensus 445 ~~~l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 445 IIFLMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHHHHhc-cCCcHHH
Confidence 99998887653 3344444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0029 Score=60.15 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 279 DFKHVVEIFDDMLR---NG-VQPDRIT-FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 279 ~~~~A~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
+.++.++++.+++. .| ..++..+ |..++-+....|+.+.|..+++++.+. ++.+..+-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhH
Confidence 56677777776653 23 4445444 444555566677888888888877665 222323322223334456777777
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
+++++.+.+.+. .|.+++---+.+.-..|+--+|++.+.+..+. +..|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 777777777653 35666666666666667666777766666554 2556677777777777777777777777776543
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 003433 434 GIRKDAVTYNALLGGYGKQG---KYDEVRRMFEQMKAD 468 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 468 (820)
. +-+...+..+...+.-.| +++-|.++|.+.++.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 334444444444433332 334455555555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.9e-05 Score=66.41 Aligned_cols=97 Identities=24% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
......+...+.+.|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|..+|+...+.+. .+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 3444455556666666666666666665542 33555566666666666666666666666655542 245555556666
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 003433 519 LCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~ 537 (820)
|...|++++|+..|++..+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0023 Score=60.78 Aligned_cols=190 Identities=12% Similarity=0.122 Sum_probs=122.0
Q ss_pred CCCHHHHHHHHHHHHHcccc---cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003433 169 RGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 245 (820)
..+.++.++++..++..... .++.-.++..++-+....|+.+.|...+..+..+ ++.+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34667777777776643211 1222345666777777788888888888887665 3333333333333445578888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEM 325 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 325 (820)
+|+++++.+.+.+. -|.++|-.=+...-..| .--+|++-+.+..+. +.-|...|.-|...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~ddp-t~~v~~KRKlAilka~G-K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDDP-TDTVIRKRKLAILKAQG-KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccCc-chhHHHHHHHHHHHHcC-CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887653 26666766666666666 445677666666655 4457888888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhC
Q 003433 326 VHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAK 363 (820)
Q Consensus 326 ~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~ 363 (820)
+-.. +.+...+..+.+.+.-.| +++.|.+.|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7653 334555555666554444 455677777776665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00017 Score=72.81 Aligned_cols=289 Identities=11% Similarity=0.036 Sum_probs=144.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+.+..++.+|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-++.. +-....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 34555666666777777666663 2233444455555556666666655554443321 111223333334444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALI-DALCKNGLVESAVSLLDE 534 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~~~ 534 (820)
+|.+.++. ...+ ....|+..++.+..... +|...+|..|- .++...|++++|..+--.
T Consensus 135 ~A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 44444441 0000 11122222222222111 13344554442 344556677777666555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHH-Hh
Q 003433 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAE-KA 613 (820)
Q Consensus 535 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 613 (820)
.++..- -+......-..++.-.++.+.|+..+.+++...|+....- .+..+..++... ..
T Consensus 195 ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk------------------~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 195 ILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK------------------SASMMPKKLEVKKER 255 (486)
T ss_pred HHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH------------------hHhhhHHHHHHHHhh
Confidence 554311 1111222222234556667777777777777666542110 011111111100 01
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKL---KIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY- 689 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~---~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~- 689 (820)
|. +....|++.+|.+.|.+.+.. .++|+...|.....+..+.|+..||+.--++++++|+.-...+..-...+
T Consensus 256 gN---~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GN---DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hh---hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11 122335677788888888762 13334555777777788899999999888888877775333221111111
Q ss_pred ccchHHHHHHHHHHHhhcCC
Q 003433 690 RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~ 709 (820)
.-+.|++|.+.|+++.+.+-
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 35689999999999887655
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.4e-05 Score=74.22 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=90.4
Q ss_pred hhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHH
Q 003433 622 CRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALS 699 (820)
Q Consensus 622 ~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~ 699 (820)
..++|++|+..|.+.++ +.| |.+.|..=..+|++.|.++.|++-.+.++.+||...-.+-.+...+ ..|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34589999999999998 777 6777889999999999999999999999999998777777776666 5899999999
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHhhcCchH
Q 003433 700 LFDEVKLMDSSTASAFYNALTDMLWHFGQKR 730 (820)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 730 (820)
.|+++++++|++ ..+...|-++--+.++..
T Consensus 171 aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999965 677888887766666555
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00035 Score=73.48 Aligned_cols=119 Identities=15% Similarity=0.184 Sum_probs=58.1
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|++++++..+.. +-|......-...|.+.+++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 333444455555555555555442 22 22234444445555555555555555432 23444444444455555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
+.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 55555555555443 233445555555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00069 Score=61.63 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 003433 417 LGRFEEALLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 417 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 491 (820)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555566655566555433 222 122233445556666666666666666654311211 22334455556666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
+|+..++...... .....+....+.|.+.|+.++|...|++.
T Consensus 103 ~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666665432221 23344555566666666666666666543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00037 Score=60.94 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 233 (820)
++.+..++..+.+.|++++|++.|+.++...+..+....++..++.++.+.|+++.|...|+.+....+.. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35566677778888999999999988887643322223456678888888899999999998887753221 2456778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
+..++.+.|+.++|...++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8888888888888888888888754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00042 Score=63.05 Aligned_cols=118 Identities=17% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 246 (820)
.+++..+...++.+....+..+-.....-.+...+...|++++|...|+.+......++ ..+...|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555544322211122233344555555555555555555555432211 1233334445555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 003433 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDD 289 (820)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~ 289 (820)
|+..++...... .....+......+.+.| +.++|...|+.
T Consensus 104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g-~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEA--FKALAAELLGDIYLAQG-DYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcc--hHHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 555554432211 12223334444445555 55555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00061 Score=71.72 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
...|+..+...++++.|+.+|+++.+.. |+ ....++..+...++-.+|.+++.+.+... +.+...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666677777777777776543 33 33346666666777777777777766542 3455555555666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.++++.|+++.+++.+..+. +..+|..|..+|.+.|++++|+..++.+-.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77778888887777775432 556777788888888888888777776653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.001 Score=67.51 Aligned_cols=292 Identities=10% Similarity=0.007 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG 383 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 383 (820)
.....+.+..++..|+..+...++.. +.++..|..-+..+...|++++|.--.+.-.+.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34455666666666666666666654 223455555555566666666665555444332111 1112222333333334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 003433 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNAL-LGGYGKQGKYDEVRRM 461 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~ 461 (820)
+..+|.+.++ +...| ....|+..++.+..... +|.-.+|..+ ..++.-.|++++|..+
T Consensus 132 ~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444433333 11111 11122222222222111 1223344333 3345566677776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 462 FEQMKADCVSPNLLTYSTLID--VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 462 ~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
--.+++.. ..-.+..+++ ++.-.++.+.|...|++.+..+ |+... .+..-.-.+.++.+.+.|
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~----------sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQK----------SKSASMMPKKLEVKKERG 256 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhh----------HHhHhhhHHHHHHHHhhh
Confidence 65555432 1112222222 2334566667777776666543 33221 111112223333344332
Q ss_pred CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
+-..+.|.+..|.+.|.+++...|++. ......|+..+..
T Consensus 257 ------------N~~fk~G~y~~A~E~Yteal~idP~n~--------------------~~naklY~nra~v-------- 296 (486)
T KOG0550|consen 257 ------------NDAFKNGNYRKAYECYTEALNIDPSNK--------------------KTNAKLYGNRALV-------- 296 (486)
T ss_pred ------------hhHhhccchhHHHHHHHHhhcCCcccc--------------------chhHHHHHHhHhh--------
Confidence 345688999999999999998887653 1223334322211
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPNVV-TFSAILNACSRCNSFEDASMLLEELRLF 674 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd~~-~~~~ll~a~~~~g~~~eA~~~~~~~~~~ 674 (820)
....++..+|+.--++.+. ++|..+ .|..-..++...++|++|.+-|+++.+.
T Consensus 297 ~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222355667777776655 443211 2333344555668999999999987754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00023 Score=75.36 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=74.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
-+..+...|++++|+++|++++..+|.+..+..++...+ ..|++++|+..++++++++|.+ ...|..++.+|.+.|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCCH
Confidence 345666788999999999999888888877666554444 5788899999999999999855 66688899999999999
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
++|+..++++.+...
T Consensus 87 ~eA~~~~~~al~l~P 101 (356)
T PLN03088 87 QTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999988877654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.8e-05 Score=50.12 Aligned_cols=33 Identities=52% Similarity=0.920 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677888888888888888888888887777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0063 Score=60.42 Aligned_cols=69 Identities=12% Similarity=0.088 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
++.+-.....+.+.|++++|++.|+.++...+..+....+...++.++.+.+++++|...|++.++..+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 444444555666677777777777777776443332222334566777777777777777777776543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0033 Score=64.40 Aligned_cols=140 Identities=18% Similarity=0.275 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccccc---CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERK---NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
+.|......|...++|++|.+.|.++....... ......|...+.+|.+. ++++|...++++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-------------- 100 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-------------- 100 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH--------------
Confidence 345666777777788888888887775432111 11122333334433332 555555444444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHH
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG-GVDFKHVVEIFDDMLRN----GVQ-PDRITFNSLLA 307 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~ 307 (820)
+..|...|++..|-.++.++- ..|-.. | ++++|++.|++..+. |-. --..++..+..
T Consensus 101 -~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~-d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 101 -IEIYREAGRFSQAAKCLKELA---------------EIYEEQLG-DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcC-CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 335556666666655555443 234444 5 666666666666532 100 00223344455
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 003433 308 VCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+.+.|++++|.++|+++...
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 556666666666666665543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=57.20 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=25.3
Q ss_pred cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcC-chHHHHHHHHHhhh
Q 003433 691 DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFG-QKRGAQLVVLEGKR 741 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 741 (820)
.+++++|+..|+++++.+|++ +..|..++.+|.+.| ++++|.+.++++.+
T Consensus 16 ~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 16 QGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344444444444444555532 344555555555555 45555555555443
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00032 Score=58.00 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
++..++..+...|++++|...|+++.+..+.+..+...+...+ ..+++++|...++++++..|.. ...+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 3556777888899999999999999888777654444443333 5688999999999999998865 4668899999999
Q ss_pred cCchHHHHHHHHHhhh
Q 003433 726 FGQKRGAQLVVLEGKR 741 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (820)
.|++++|..++..+.+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999877654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.69 E-value=6.5e-05 Score=48.98 Aligned_cols=33 Identities=55% Similarity=0.863 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d 403 (820)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555554444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.6e-05 Score=48.61 Aligned_cols=33 Identities=39% Similarity=0.699 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 542 (820)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466677777777777777777777777666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.001 Score=70.47 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=80.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
....+...|++++|+++|+++++.+ +.+..++..++.+|.+.|++++|+..+++++.... .+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHh
Confidence 3455677889999999999998875 44556888888899999999999999999988754 3677888888899999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
|++++|+..|++..+. .|+......++
T Consensus 84 g~~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999999988874 35444433333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0028 Score=64.07 Aligned_cols=128 Identities=12% Similarity=-0.038 Sum_probs=74.6
Q ss_pred cCCccchhhhhhHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHh----hcCCchhHHH--
Q 003433 614 GQGKKENRCRQEILCILGVFQKMH----KLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELR----LFDNQVYGVA-- 682 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~----~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~----~~~~~~~~~~-- 682 (820)
|.....+.+.|+++.|+..-+.=+ +.|-+. ....+..|++++.-.|+++.|.+.|...+ ++........
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQsc 278 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSC 278 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 444444566678888876544322 233222 24458889999999999999999988754 2232222221
Q ss_pred HHHHhcc-ccchHHHHHHHHHHHhhcC-----CCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 683 HGLLMGY-RDNIWVQALSLFDEVKLMD-----SSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 683 ~~~~~~~-~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+++...| -...+++|+.++.+=+.+- -.-....|-+|++.+-..|..+.|..+....++
T Consensus 279 YSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 279 YSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1122222 1345677777776644321 001134577788888888888888877665543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=55.26 Aligned_cols=111 Identities=22% Similarity=0.115 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISA 237 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~ 237 (820)
..+...+-..|+.++|+.+|++++..+.....-..++..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 345566777888888888888888866443333456777888888888888888888888765221 122333334456
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
+...|+.++|++++-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 6777888888888776654 34446665555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0026 Score=59.85 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=56.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+...|++++|+..|++++......+....++..++.++.+.|++++|+..++++++... .+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4555666667777777777777777765432222234666677777777777777777777766532 245556666666
Q ss_pred HHhcCChhHHHH
Q 003433 238 YGRSGYCQEAIS 249 (820)
Q Consensus 238 ~~~~g~~~~A~~ 249 (820)
|...|+...+..
T Consensus 116 ~~~~g~~~~a~~ 127 (172)
T PRK02603 116 YHKRGEKAEEAG 127 (172)
T ss_pred HHHcCChHhHhh
Confidence 666666544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.12 Score=53.53 Aligned_cols=419 Identities=13% Similarity=0.103 Sum_probs=217.8
Q ss_pred HHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 145 ILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
+-+.+..++.+.-+|..|+..|...+.+++.+++++++...- |-...++..-+..-...+++.....+|.+.+...
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf---p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPF---PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC---ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 344455566666788999999999999999999999998653 3333477777777777789999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHh-CCCCC-CHHHHHHHHHHHH---cCC-----CCHHHHHHHHH
Q 003433 225 GNTVYAFSALISAYGRSGYCQ------EAISVFNSMKR-YNLKP-NLVTYNAVIDACG---KGG-----VDFKHVVEIFD 288 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~-~~~~p-~~~~~~~ll~~~~---~~g-----~~~~~A~~~~~ 288 (820)
.+...|...+..-.+....- .-.+.|+-... .++.| ....|+..+.-+- ..| .+.+.....|.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 46778887777555443211 11223333222 23444 2334444443321 112 03556666777
Q ss_pred HHHHCCCCC------CHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHH--CCCC----CCHHHH-----------H
Q 003433 289 DMLRNGVQP------DRITFNSLLAVC-SR------GGLWEAARNLFNEMVH--RGID----QDIFTY-----------N 338 (820)
Q Consensus 289 ~m~~~g~~p------~~~~~~~ll~~~-~~------~g~~~~A~~~~~~~~~--~g~~----~~~~~~-----------~ 338 (820)
+|+..-+.- |-..|..=++-. ++ .--+-.|.+.++++.. .|+. .+..++ -
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 776532210 001111111111 00 1123445555555532 1221 111122 1
Q ss_pred HHHHHHHhc-----CC-HHH-HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------
Q 003433 339 TLLDAICKG-----AQ-MDL-AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRV------ 405 (820)
Q Consensus 339 ~ll~~~~~~-----g~-~~~-A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~------ 405 (820)
.+|+.-... |+ ... .--++++.... +.-....|---...+...++-+.|+.....-... .|...
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~ 342 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEY 342 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHH
Confidence 222221111 11 111 11122222211 0112222322223333444444444443332211 11100
Q ss_pred ------------HHH----HHHHHHHHcCCHHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 406 ------------SYN----TVLSIYAKLGRFEEALLV------CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFE 463 (820)
Q Consensus 406 ------------~~~----~li~~~~~~g~~~~A~~~------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 463 (820)
+|. .|..-|. .++-+.+... ..++.-.....-..+|...+....+..-++.|+.+|-
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYS-MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHh-hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 000 1111111 1111111111 1111100011234567777777778888888999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 464 QMKADC-VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY-SALIDALCKNGLVESAVSLLDEMTKEGIR 541 (820)
Q Consensus 464 ~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 541 (820)
+..+.+ +.+++..+++++..++ .|+..-|.++|+--... -||...| +-.+..+...++-+.|..+|+..+.. +.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 888887 6778888888888776 57778888888765543 2344443 45667778888888888888866543 23
Q ss_pred CC--HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 542 PN--VVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 542 p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
-+ ..+|..+|+-=..-|++..+..+-++..+..|.
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 23 457888888777788887777665555554443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.3e-05 Score=47.88 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKP 261 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 261 (820)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666655554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0077 Score=61.72 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=79.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc-CchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhc
Q 003433 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAG 595 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 595 (820)
..|...|++..|-+++.++ ...|... |++++|++.++++++.+....... ...
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~-----------~a~ 155 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH-----------SAA 155 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH-----------HHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh-----------hHH
Confidence 3566666666666555554 3456666 889999999998888765432100 001
Q ss_pred cchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 003433 596 RTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-----PNVV-TFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~-----Pd~~-~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
.+...+..++.+ .+++++|+++|++....-.+ .+.. .|...+-.+...|+...|.+.|+
T Consensus 156 ~~~~~~A~l~~~---------------l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 156 ECLLKAADLYAR---------------LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHH---------------TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222333333332 24889999999998764332 1221 22333335556788999999998
Q ss_pred HHhhcCCc-----hhHHHHHHHhccccc---hHHHHHHHHHHHhhcC
Q 003433 670 ELRLFDNQ-----VYGVAHGLLMGYRDN---IWVQALSLFDEVKLMD 708 (820)
Q Consensus 670 ~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~ 708 (820)
+....+|. .+..+..++.++..+ .+.+|..-|+++.++|
T Consensus 221 ~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 221 RYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 88766542 233333444444322 3444444444444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0012 Score=66.61 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
....+-+|+++|...|..++|..+.+..+
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45667788999999898898888776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00082 Score=65.63 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
..-+.+.++|++|+..|..++... |.+...|..-..+|.+.|.++.|++-.+.++..+.. ...+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~---P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD---PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccC
Confidence 445677888999999999988874 566778888888899999999998888888876432 4678888888899999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
++++|++.|++.++ +.|+..+|-.=|
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHH
Confidence 99999988888887 567776665433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=54.12 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=8.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003433 410 VLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~ 430 (820)
+...+...|++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444333333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00018 Score=58.28 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
+.|++++|..++++ .+.++.+ ......++.+|.+.|++++|+++++++
T Consensus 37 ~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 37 QQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34444555555544 3334423 333556689999999999999988753
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0088 Score=57.85 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG 223 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 223 (820)
++.+-.....+.+.|++.+|++.|+.+....+..+-...+...++.++.+.|+++.|...++..++.-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34455566777888999999999999988766555556677788889999999999999999887763
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=57.00 Aligned_cols=82 Identities=15% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAI 248 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 248 (820)
.|+++.|+.+|++++......+ +...+..++.+|.+.|++++|..+++. .+.+. .+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5788899999998888764211 333455588888899999999988877 33322 24455556688888888999888
Q ss_pred HHHHH
Q 003433 249 SVFNS 253 (820)
Q Consensus 249 ~~~~~ 253 (820)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0057 Score=57.50 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSI 550 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 550 (820)
...+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|+..++++++. .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34556666677777777777777777765433222 356777777888888888888888888774 333 4455666
Q ss_pred HHHHhhcCchhhhH
Q 003433 551 IDAFGRSATTECTV 564 (820)
Q Consensus 551 l~~~~~~g~~~~a~ 564 (820)
..++...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 66666666655443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0015 Score=69.01 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS--GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYS 478 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 478 (820)
+.+......+++.+....+++++..++.+.... ....-..|..+++..|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555555555555566666666555443 111122334466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666666655444444444544444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=69.00 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=105.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVL 511 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 511 (820)
+.+........+++.+....+++++..++-+..... ..--..|..+++..|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 336677888888999988899999999999887652 222234557999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRS 557 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 557 (820)
+|.|++.+.+.|++..|.++..+|...+...+..|+.--+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777878887777777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=64.17 Aligned_cols=118 Identities=10% Similarity=0.037 Sum_probs=94.8
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc----ccchHHHHHHHHHH
Q 003433 629 ILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDE 703 (820)
Q Consensus 629 Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~ 703 (820)
.+.-++.=+. -+| |...|..|+.+|...|++++|...|..+..+.+++..+.-++.-.+ ...+-.+|..++++
T Consensus 141 l~a~Le~~L~--~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 141 LIARLETHLQ--QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHH--hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 3333444333 356 6778999999999999999999999999999998888776653322 24466799999999
Q ss_pred HhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhh
Q 003433 704 VKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVW 749 (820)
Q Consensus 704 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 749 (820)
+++.||.+ ......|+-.++..|++.+|...|+.+.+....+..|
T Consensus 219 al~~D~~~-iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 219 ALALDPAN-IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHhcCCcc-HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999955 7779999999999999999999999998776655444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.13 Score=55.89 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAF 554 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~ 554 (820)
..|..--...|.++.|++.--.+.+. .+-|...+|..|.-+-
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaa 1067 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAA 1067 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHH
Confidence 33444456678888887765555443 3555666666554433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=55.07 Aligned_cols=14 Identities=14% Similarity=0.394 Sum_probs=5.0
Q ss_pred hcCCHHHHHHHHHH
Q 003433 451 KQGKYDEVRRMFEQ 464 (820)
Q Consensus 451 ~~g~~~~A~~~~~~ 464 (820)
+.|+.++|...+++
T Consensus 88 ~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 88 ELGDKEKAKATLQQ 101 (119)
T ss_pred HhCChHHHHHHHHH
Confidence 33333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.012 Score=65.21 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
..+|.++.-.+...|++++|...|++....+ |+...|..+...+...| +.++|.+.|++..+.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G-~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKG-DNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Confidence 3444444444444455555555555555422 44445555555555555 555555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=65.73 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45666666666666777777777666433 2333444444444333 34455577777766654 345566666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
.+.++.+.|..+|++.+.. +..+ ...|...+..-.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 7777777777777776654 2211 247777777777778888777777777763 344333333443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.27 Score=53.65 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=12.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~ 501 (820)
|..+.+.|+.-+|-+++.+|.
T Consensus 930 Ie~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHh
Confidence 445556666666666666664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.055 Score=53.74 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL--GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~--~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
+...|.+.|.+..|+.-++.+++. +.+........++.+|.+.|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455556666666555555544 11222334445555555555555555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0026 Score=56.85 Aligned_cols=94 Identities=13% Similarity=-0.054 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
.-.+...+.+.|++++|.++|+.....+ +.+...|..|+-++-..|++.+|+..|..+...++ .|...+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3345566777788888888887777764 33445667777777788888888888888777654 4677777777788
Q ss_pred HhcCChhHHHHHHHHHHh
Q 003433 239 GRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~ 256 (820)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888877664
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00016 Score=45.57 Aligned_cols=29 Identities=41% Similarity=0.778 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 511 LYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 511 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0037 Score=58.53 Aligned_cols=96 Identities=19% Similarity=0.108 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
...+..++..+...|++++|+..|+.++.....+.....++..++.++...|++++|+..++.+.... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 34566677778888999999999999987643333334578888999999999999999999988763 33456677777
Q ss_pred HHHH-------hcCChhHHHHHHH
Q 003433 236 SAYG-------RSGYCQEAISVFN 252 (820)
Q Consensus 236 ~~~~-------~~g~~~~A~~~~~ 252 (820)
..|. +.|+++.|+..++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 7777 5566654444443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0047 Score=51.05 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchh
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTKEGI-RPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (820)
-...|..+...|++.....+|+.+++.|+ .|+..+|+.++.+.++...-..+++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie------------------------- 82 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIE------------------------- 82 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHH-------------------------
Confidence 34456667777999999999999999999 8999999999988765432111111
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 003433 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSR 657 (820)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~ 657 (820)
.++-+.+.+|+.|+..+++|+..||+.++..+.+
T Consensus 83 ---------------------------------~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 83 ---------------------------------NKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 0333578899999999999999999999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.003 Score=64.45 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 265 TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDA 343 (820)
Q Consensus 265 ~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~ 343 (820)
+|..+++...+.+ ..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~-g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTE-GIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555555555555 45566666666553321 122223333333 22234455566666666554 34455666666666
Q ss_pred HHhcCCHHHHHHHHHHchhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNISPNV----VTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
+.+.|+.+.|..+|++.... + +.. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666544 2 222 35666666666666666666666655554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0048 Score=57.78 Aligned_cols=49 Identities=24% Similarity=0.370 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL-WEAARNLFNEMVH 327 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~ 327 (820)
+-+-|++++++|...|+-||..|+..|+.++.+.+. ..+..++.-.|.+
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 446778888888888888888888888888876664 3344444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00023 Score=44.78 Aligned_cols=26 Identities=42% Similarity=0.942 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
|+++|++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00058 Score=52.08 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
..|++++|+..|+++++.+|. +...+..+++++.+.|++++|..+++++.+..
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567888888888888888885 46778889999999999999998888876654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=55.88 Aligned_cols=94 Identities=11% Similarity=-0.016 Sum_probs=79.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (820)
.-....-+...|++++|..+|.-+...|+.+...+.++...+ ..+.+++|+..|.-+..+++++ +..+...+.+|...
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l 118 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHHh
Confidence 345566667899999999999999988888877776666555 4789999999999999888854 66688899999999
Q ss_pred CchHHHHHHHHHhhhh
Q 003433 727 GQKRGAQLVVLEGKRR 742 (820)
Q Consensus 727 g~~~~A~~~~~~~~~~ 742 (820)
|+.+.|+..|..+.++
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999887663
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0036 Score=51.70 Aligned_cols=77 Identities=17% Similarity=0.388 Sum_probs=48.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGL-KADVVLYSALIDALCKNG--------LVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
.|.-+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 566666666666554432 234566777888777788888888887
Q ss_pred HHHHhh
Q 003433 551 IDAFGR 556 (820)
Q Consensus 551 l~~~~~ 556 (820)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0007 Score=51.65 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCC
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~ 710 (820)
++..+...|++++|.+.|+.+++.+|.+..++..+...+ ..|++++|+..|+++++.+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 455667777888888888887777777776666555444 577778888888888777774
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0053 Score=57.47 Aligned_cols=51 Identities=27% Similarity=0.456 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 401 GLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
..|..+|..+++.|.+. |.++=....++.|.+-|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34556666666666533 4555555566666666766777777777666544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0064 Score=63.88 Aligned_cols=134 Identities=11% Similarity=0.108 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccc
Q 003433 625 EILCILGVFQKMHK-LKIKPNVV-TFSAILNACS---------RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDN 692 (820)
Q Consensus 625 ~~~~Al~~~~~m~~-~~~~Pd~~-~~~~ll~a~~---------~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 692 (820)
+.+.|+.+|.+.+. ..++|+.. .|..+...+. ......+|.++-+.+.+.|+.+..+...+.... -.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 56679999999982 23788744 3544443332 133566788899999999999988765544322 234
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh--hhhhccchhhhhc
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE--NVWSESCLDLHLM 759 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~d~~~~ 759 (820)
.++.|...|++++.++|+. +..|...++++...|+.++|.+.++++.+.+... .+.++.|+|.+.-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~ 420 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDI-ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP 420 (458)
T ss_pred chhhHHHHHHHHhhcCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC
Confidence 5999999999999999955 6779999999999999999999999988776543 2445556665543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0063 Score=56.95 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP--NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
..|..++..+...|++++|...|++.+.....+ ...++..+...|...|++++|+..+++..+... ....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHH
Confidence 344444555555555666655555554432111 123455555556666666666666665554321 12334444444
Q ss_pred HHH-------HcCCHHHHHHHHHH
Q 003433 518 ALC-------KNGLVESAVSLLDE 534 (820)
Q Consensus 518 ~~~-------~~g~~~~A~~~~~~ 534 (820)
.+. ..|++++|+..+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 444 55565544444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.019 Score=63.55 Aligned_cols=63 Identities=16% Similarity=-0.024 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...|..+...+...|++++|...+++.++.+ |+...|..++..+...|+.++|.+.|+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555555555566666666666666644 4556666666666666666666666666655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0063 Score=60.03 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG---KVDLAKNIFETALNEGYGNTVY 229 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 229 (820)
+.+.+.|..|...|.+.|+++.|...|.++.+..+ ++...+..+..++.... ...++..+|+++++.++. |+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g---~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG---DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 33444555555555555555555555555555532 22223333333333221 234455555555554322 455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
+...|...+...|++.+|...|+.|.+
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555555554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=51.02 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
..|++++|+..|+++++.+|++ ..++..|+.+|.+.|++++|..++.........
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4688999999999999999965 666889999999999999999999887766543
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.14 Score=49.18 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 003433 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG-----IDQDIFTYNTL 340 (820)
Q Consensus 266 ~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-----~~~~~~~~~~l 340 (820)
-+.++..+.-.+ ++.-.+.++.+.++...+.+......|+++-.+.||.+.|...|++..+.. +..+..+....
T Consensus 180 my~~~~~llG~k-Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMK-EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcch-hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345555555566 677777777777776656667777777777777777777777777665532 22222333333
Q ss_pred HHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 341 LDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL 398 (820)
Q Consensus 341 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 398 (820)
...|.-.+++..|...|+++...+.. |.+.-|.-.-+..-.|+..+|++.++.|+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556666677777666665433 4555555444445566677777777776665
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.071 Score=51.13 Aligned_cols=145 Identities=11% Similarity=0.072 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL----- 480 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 480 (820)
+.+.++..+.-.|.+.-...++.++++..-+.++.....|+.+-.+.|+.+.|...|+...+..-.-|..+.+.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445566666667777777778888777665667777788888888888888888888866544333343333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 481 IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 481 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
...|.-.+++..|...|++....+.. |+...|.-.-+..-.|+..+|++.++.|... .|...+-++++-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~n 328 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFN 328 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHH
Confidence 34455667888888889888876543 6666666555666778899999999999874 5666555544433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.2 Score=45.66 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPNLLTYS 478 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 478 (820)
|+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++.+|...++.+.+.. -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555555555555555555443334455555555555555555555555555554432 1122 222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
.+...|...|++.+|...|+.....- |+...-......+.++|+.++|..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555555555555555432 233222223334445554444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0034 Score=48.49 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHc
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNE 222 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 222 (820)
++.|..+...+.+.|++++|+..|.++++.+ +.+..++..++.++.+.| ++++|++.++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4456666666677777777777777776663 444556666677777776 567777776666553
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0029 Score=50.35 Aligned_cols=69 Identities=10% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
.+|+.++..|...|++++|+.+|++++.. -...+.. .+ .....++.++++|..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~-------------------------~~-~~a~~~~~lg~~~~~ 58 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDD-------------------------HP-DTANTLNNLGECYYR 58 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTH-------------------------HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCC-------------------------CH-HHHHHHHHHHHHHHH
Confidence 45888999999999999999999888732 1111100 00 114568999999999
Q ss_pred cCchHHHHHHHHHhhh
Q 003433 726 FGQKRGAQLVVLEGKR 741 (820)
Q Consensus 726 ~g~~~~A~~~~~~~~~ 741 (820)
.|++++|.++++++.+
T Consensus 59 ~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 59 LGDYEEALEYYQKALD 74 (78)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999988754
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0033 Score=48.36 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
..|++++|++.|+.++... |.+..+...++.+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555542 333334445555555555555555555555543
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.25 Score=48.00 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+-.-+..-.+.|+|++|.+.|+.+..+.+..+-...+...++-++.+.+++++|+...++..+.-+......|-.-|
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444444445567888888888888877765555555666677777777777777777777776653322223343344
Q ss_pred HHHH
Q 003433 236 SAYG 239 (820)
Q Consensus 236 ~~~~ 239 (820)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00067 Score=43.54 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHH
Q 003433 700 LFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQL 734 (820)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 734 (820)
+|+++++++|++ +..|+.|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 378999999965 7779999999999999999963
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.62 Score=48.21 Aligned_cols=64 Identities=22% Similarity=0.350 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
|..+...-.+.|+.+-|..+.+. . +. -..-+-.+.+.|+.+.| +.++.+.| .+| -+|..|+..-
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~----E---p~----~~~qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~ 66 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLEL----E---PR----ASKQVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLK 66 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHc----C---CC----hHHHHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHH
Confidence 55667777778888888877642 1 11 12345667777877777 45566554 223 2455555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.071 Score=51.55 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.+-..+..+...|++++|.+.|+.+...-+. ....+...++.++-+.|++++|...|++..+.-
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3445566778899999999999999876322 235567788889999999999999999987643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.066 Score=46.19 Aligned_cols=53 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
+-..|+.++|+.+|++....|.... ...+..+.+.|...|++++|+.++++..
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444332221 1223333344444444444444444443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.083 Score=56.90 Aligned_cols=56 Identities=11% Similarity=0.064 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
+..+...+...+-+...+.-|-++|.+|-.. ..+++.....+++.+|..+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444455555566666777777766432 2456666677777777777666544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.82 Score=47.79 Aligned_cols=349 Identities=14% Similarity=0.171 Sum_probs=169.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCC---hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS--AYGR 240 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~ 240 (820)
+.+++++.+|.++|.++.+.....+. .....+.++++|. .++++..........+... ... |..|.. .+-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~-~s~--~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG-KSA--YLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC-Cch--HHHHHHHHHHHH
Confidence 55678999999999988775322211 1223456667665 3556666666666654421 222 333332 3457
Q ss_pred cCChhHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----CCCCHHHH
Q 003433 241 SGYCQEAISVFNSMKRY--NLKP------------NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG----VQPDRITF 302 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g----~~p~~~~~ 302 (820)
.+.+++|++.+..-.+. +..+ |...-+..+.++...| ++.++..+++++...= ...+..+|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 78899998888776543 2111 1122245556666777 7777777777666432 33566677
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
+.++-.+.+ .+|-++.+.. .-| ..-|.-++-.|-+.= ..++...-..+.|-......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 765555443 2333332221 111 112333444443321 111111111122333333333332221
Q ss_pred c--CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC
Q 003433 382 A--GRLDDALNMFSEMKFLGIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEMESSGI----RKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 382 ~--g~~~~A~~~~~~m~~~~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~ 454 (820)
. .+..--+++++.-...-+.|+. -+...|+..+.+ +.+++..+.+.+....+ ..=..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1111122222222233334443 223344444433 44444444443322211 1123567777778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHH-HHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYS-------TLIDVYSK----GGLYKEAMQIFREFKQAGLKADV-VLYS-ALIDALCK 521 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~-~~~~-~li~~~~~ 521 (820)
..+|.+.+.-+... .|+...-. .+-++.+. .-+..+=+.+|+.....++.... +.|- --..-+.+
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE 391 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh
Confidence 88888888776654 44433211 22233331 12334445566666655443211 1111 11334567
Q ss_pred cCC-HHHHHHHHHHHHHC
Q 003433 522 NGL-VESAVSLLDEMTKE 538 (820)
Q Consensus 522 ~g~-~~~A~~~~~~m~~~ 538 (820)
.|. -++|+.+++..++.
T Consensus 392 ~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF 409 (549)
T ss_pred cCCccHHHHHHHHHHHHh
Confidence 776 78889999988874
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=1 Score=48.94 Aligned_cols=364 Identities=13% Similarity=0.118 Sum_probs=186.8
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003433 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
.....+.|+.++..-.+..+.+.+..++..++..- |.-...|...+..-.+.|..+.+.++|++.+.. ++.++..|
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky---Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW 116 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY---PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLW 116 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHH
Confidence 33456788888887777777777888888887653 433446777788888889999999999988764 66677778
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 232 SALISAYG-RSGYCQEAISVFNSMKRY-NLK-PNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 232 ~~li~~~~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
......++ ..|+.+...+.|+..... |.. -....|...|.--...+ ++.....+|++.++. ...-|+..-.-
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qk-s~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQK-SWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccc-cHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 77666544 346777777777777642 221 13445666666555555 667777777776653 11112211111
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCCHHHHHHHHHHHH-HcC
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPNVVTYSTMIDGYA-KAG 383 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~-~~g 383 (820)
| .+..+.. ++. + ....+++.++-...... ........+..-++.-. ..+
T Consensus 192 f-------------~~~l~~~-~~~--~----------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~ 245 (577)
T KOG1258|consen 192 F-------------KQLLNQN-EEK--I----------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSK 245 (577)
T ss_pred H-------------HHHHhcC-Chh--h----------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccc
Confidence 1 1111100 000 0 00011111111100000 00001111111111100 011
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHH
Q 003433 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG-------IRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~ 456 (820)
..+++..++.+.... --.+|-......+.+..|+.-++.- ...+..+|+.-+.--.+.|+++
T Consensus 246 ~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~ 314 (577)
T KOG1258|consen 246 SLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFS 314 (577)
T ss_pred hhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHH
Confidence 122222222211110 1112222223333333444333221 1234577888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.+.-+|++..--. .--...|-..+......|+.+-|..++....+.-.+-...+--.-....-..|++..|..+++...
T Consensus 315 ~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 315 RVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 8888888765321 112334444555555558888887777766554333222222222223345678999999999988
Q ss_pred HCCCCCCHH-HHHHHHHHHhhcCchhhhH
Q 003433 537 KEGIRPNVV-TYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 537 ~~g~~p~~~-~~~~ll~~~~~~g~~~~a~ 564 (820)
.. . |+.+ .-..-+....+.|..+.+.
T Consensus 394 ~e-~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 394 SE-Y-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hh-C-CchhhhHHHHHhHHHHhcchhhhh
Confidence 76 3 5544 3333444556667766654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.024 Score=56.81 Aligned_cols=96 Identities=16% Similarity=0.079 Sum_probs=62.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYG 239 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~ 239 (820)
.+..+.+.|++++|+..|+..++..+...-...++..++.+|...|++++|...|+.+++.-+. ....++..++..+.
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 3333355677888888888887764333222346667777788888888888888887764221 12445555666777
Q ss_pred hcCChhHHHHHHHHHHhC
Q 003433 240 RSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~ 257 (820)
..|+.++|..+|+++.+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777788888877777763
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.81 Score=46.80 Aligned_cols=283 Identities=14% Similarity=0.066 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLD----AICKGAQMDL 352 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~----~~~~~g~~~~ 352 (820)
+-..|.++-.+..+. +..|......|+.+- .-.|+++.|.+-|+.|.. |..+-..=+. .--+.|..+.
T Consensus 99 da~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 99 DASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred chHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHH
Confidence 555555555544322 233555554454433 346777888888877776 2333222222 2235677777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHH--H-HcCCHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG-IGLDRVS--YNTVLSIY--A-KLGRFEEALLV 426 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~d~~~--~~~li~~~--~-~~g~~~~A~~~ 426 (820)
|.++-++.-..-.. -...+...+...|..|+++.|+++++.-+... +.++..- -..|+.+- . -.-+...|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77777666554222 34567777788888888888888877655432 2233221 12222211 1 11234455555
Q ss_pred HHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 003433 427 CKEMESSGIRKDAVT-YNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM-QIFREFKQAG 504 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~ 504 (820)
-.+..+. .||.+- -..-...+.+.|+..++-.+++.+-+.. |....+ ++..+.+.|+.-... +-.+.+....
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 4444433 455332 2234567889999999999999988774 443333 233345556532221 1122222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hhcCchhhhHHhHHHHhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF-GRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
. .+..+...+..+-...|++..|..--+.... ..|....|..|.+.- +..|+-.++.+.+.++++..-++
T Consensus 326 ~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 326 P-NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred c-cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 1 2566777788888889998888876666665 478888888888865 45589888888888888765443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.4 Score=43.71 Aligned_cols=128 Identities=17% Similarity=0.094 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC---CCCCHHHH
Q 003433 296 QPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTY 372 (820)
Q Consensus 296 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~ 372 (820)
.|++..-..|..++...|+..+|...|++....-+..|......+..+....++...|...++++-+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 345555555666666666666666666666654444555566666666666666666666666655432 1122 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~ 427 (820)
-.+...|...|+..+|...|+..... -|+...-..-...+.+.|+.+++..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 34455566666666666666666554 344333333334445555555544333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.32 Score=46.40 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
..|.....+|....++++|...+.++.+--. .+...| -....++.|.-+..++.+. +--+..++--..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3466677788888999999998888874311 111111 1223345555555555442 112445666677
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN---G--VQPDRITFNSLLAVCSR 311 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~---g--~~p~~~~~~~ll~~~~~ 311 (820)
+|..+|..+.|-..+++.-+. .++. +.++|+++|++.... + .+--...+..+.+++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~----------------lenv-~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA----------------LENV-KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH----------------hhcC-CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 889999988888777766431 1222 556666666655421 0 00012223444455666
Q ss_pred CCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcC
Q 003433 312 GGLWEAARNLFNEMVHR----GIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAK---NISPNVVTYSTMIDGYAKAG 383 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g 383 (820)
...+++|-..|.+-... .--++ -..|-+.|-.|.-..++..|...++..-+. .-.-|..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 66666665554432211 00111 122444444555556677777777663322 1122445555666554 345
Q ss_pred CHHHHHHH
Q 003433 384 RLDDALNM 391 (820)
Q Consensus 384 ~~~~A~~~ 391 (820)
+.+++.++
T Consensus 242 D~E~~~kv 249 (308)
T KOG1585|consen 242 DIEEIKKV 249 (308)
T ss_pred CHHHHHHH
Confidence 55554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.67 E-value=1.1 Score=47.03 Aligned_cols=48 Identities=8% Similarity=-0.051 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 690 RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 690 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
.+|.+.++.-...=+.+..| ++.+|..+|-++....+++||-.++.+.
T Consensus 474 sqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred hcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 46777777776666778888 3667999999999999999999887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.4 Score=48.99 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++-.++-+... .+.-|.-.+.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444555666777777777666543 4677777777777777777777665544432 345566677778
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 520 CKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
.+.|+.+||.+.+-+.... . -...+|.+.|++.+|.+..
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 8888888888877765431 1 4556777777777777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.04 Score=55.23 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=47.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhhcC
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN----VVTYNSIIDAFGRSA 558 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g 558 (820)
.+.|++++|...|+.+++..+... ...+..++..|...|++++|...|+++.+. .|+ ...+..+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHHHcC
Confidence 444556666666665555432211 234445555666666666666666666543 121 223444444555566
Q ss_pred chhhhHHhHHHHhhhhhhh
Q 003433 559 TTECTVDDVERDLGKQKES 577 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (820)
+.++|+..++++++.+|+.
T Consensus 232 ~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 6666666666666555543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.4 Score=45.72 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYS 485 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 485 (820)
+.+..|.-+...|+...|.++-.+.. .||..-|...+.+|+..+++++-.++... .-.+.-|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444555666777777776655553 46777777777777777777776665432 123466677777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 486 KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (820)
+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777766652 113456667777777777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.3 Score=45.44 Aligned_cols=119 Identities=12% Similarity=0.035 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHHhcCC
Q 003433 412 SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD-CVS-PNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 412 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~li~~~~~~g~ 489 (820)
.++.+.|+..++-.+++.+-+.. |.+..+ .+..+.+.|+.. ..-+++.... .++ .|..+...+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 55666777777777777666543 333333 222334444422 2222211110 012 244555556666666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHC
Q 003433 490 YKEAMQIFREFKQAGLKADVVLYSALIDALCK-NGLVESAVSLLDEMTKE 538 (820)
Q Consensus 490 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 538 (820)
+..|..--+..... .|....|..|.+.-.- .|+-.++...+.+.++.
T Consensus 345 ~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77666665555543 3566666666655443 37777777777777664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=1.1 Score=43.82 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG-G 448 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-~ 448 (820)
.+......+...+.+..+...+...... ........+..+...+...+.+..+...+.......... ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3333444444444444444444443321 112223333334444444444444444444444322111 111111111 4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
+...|++++|...|.+...... ......+......+...++.+.|...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 4455555555555555433110 01222223333334445555555555555554321112444555555555555556
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 527 SAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 527 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.|...+...... .|+ ...+..+...+...+..+++...+.+++..
T Consensus 220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665555543 222 223333333333444455555544444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.31 E-value=1.1 Score=46.73 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH-HHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRG-IDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY-STMID 377 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~ 377 (820)
.+|..+++.-.+..-++.|+.+|-++.+.| +.+++.++++++..++. |+...|..+|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 334444444444444555555555555554 34445555555554432 4444555555432222 1232222 23334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
.+...++-+.|..+|+..+..- ..+ ...|..+|+.-..-|++..+..+-+++.+
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4445555555555555333220 111 23455555555555655555555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=46.34 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccc----ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE----RKNDQGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
..+..+...|...|++++|++.|++++.... ..+....++..++.++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466677788888888888888888775411 1122345667777777777777777777777654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.39 Score=52.03 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
+..+...+...+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-++..+. .+| +|.-..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHH
Confidence 3344444444455556666666777665422 34566666777777777666554431 222 3333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
.++...++++|.+. |.+.|+-.+|.++++++..
T Consensus 813 wLAE~DrFeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 45555555555443 3345666677777666643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.032 Score=43.46 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=35.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..|.+.+++++|.++++.++..++. +...|.....++.+.|++++|.+.|++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666665543 5556666666666666666666666666653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.35 Score=48.75 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhc----CCchhHHHH------HHHhccc-cchHHHHHHHHHHHhhcC--CCc-
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLF----DNQVYGVAH------GLLMGYR-DNIWVQALSLFDEVKLMD--SST- 711 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~----~~~~~~~~~------~~~~~~~-~~~~~~A~~~~~~~~~~~--~~~- 711 (820)
.++.+|...|.+..++++|.-+..++.++ ...++..-+ .+..+++ .|.+.+|.+.-+++.++. ..+
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 45666666677777777766555554422 112222211 1122232 566666666666654421 111
Q ss_pred --chhHHHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 712 --ASAFYNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 712 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
-....-+++|||...|+.+.|..-++.+.
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 12234568888888888888877776554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.016 Score=60.93 Aligned_cols=99 Identities=7% Similarity=-0.119 Sum_probs=70.7
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH---HHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV---AHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAF 715 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~ 715 (820)
.+|+ ...++.++.+|.+.|++++|...|+++++++|++... ++++...| ..|+.++|+..+++++++.+ . .
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn---~-~ 145 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN---L-K 145 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---h-h
Confidence 4564 6679999999999999999999999999999987643 66666666 58999999999999999732 1 1
Q ss_pred HHHHHH--HHhhcCchHHHHHHHHHhhhhh
Q 003433 716 YNALTD--MLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 716 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
|..+.. -+....+..+..+++.++..-|
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 332211 1223344456666666555444
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=3.7 Score=46.51 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 406 SYNTVLSIYAKLG-----RFEEALLVCKEMESSGIRKDAVTYNALLGGYGK-QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 406 ~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
...-+..+|.+.. +.+.|+.++.+..+.| .|+....-..+..... ..+...|.++|......| ....+-.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~ 365 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYR 365 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHH
Confidence 3444555554432 4566777777766666 3444333322222222 245667777777777766 3333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 480 LIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 480 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
+..+|.. ..+...|..++++..+.|. +....-...+..+.. +.++.+.-.+..+.+.|
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 3333332 2366777777777777662 221111112222223 56666666555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.047 Score=42.52 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=23.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|.+.+++++|+++++.++..+ +.+...|.....++.+.|++++|.+.|++..+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444444444444433 23344444444444444444444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.14 Score=52.76 Aligned_cols=94 Identities=7% Similarity=-0.042 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
.+++.|.-.|.+.+.+.+|++.-+++++.++.+.-.++.-..++ ..+.++.|+..|+++++++|.| .++-+-|+.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 34667777888999999999999999999998888776655555 4788999999999999999966 666777777766
Q ss_pred hcCchHHH-HHHHHHhh
Q 003433 725 HFGQKRGA-QLVVLEGK 740 (820)
Q Consensus 725 ~~g~~~~A-~~~~~~~~ 740 (820)
+..++.+. .++|..|.
T Consensus 337 k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 65555433 55666554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.83 E-value=3.7 Score=44.90 Aligned_cols=377 Identities=11% Similarity=0.072 Sum_probs=209.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHH-HHhcCChHHHHHHHHHHHHc-CCC-CCHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISI-LGRLGKVDLAKNIFETALNE-GYG-NTVYAFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l 234 (820)
-|......=.+-|..+.+.++|++.+.-- +....+|...... ....|+.+..+..|+.+... |.. .+...|...
T Consensus 81 yW~kfA~~E~klg~~~~s~~Vfergv~ai---p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdky 157 (577)
T KOG1258|consen 81 YWKKFADYEYKLGNAENSVKVFERGVQAI---PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKY 157 (577)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHH
Confidence 34445555567789999999999998753 3333344444333 33567888889999998764 211 245678899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HcCC-----CCHHHHHHHHHHHHHC---C-CCCCHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC---GKGG-----VDFKHVVEIFDDMLRN---G-VQPDRITF 302 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~g-----~~~~~A~~~~~~m~~~---g-~~p~~~~~ 302 (820)
|..-..++++.....+|++.++. ....|+....-| .+.. ...+++.++-...... + .......+
T Consensus 158 ie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~ 233 (577)
T KOG1258|consen 158 IEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEEL 233 (577)
T ss_pred HHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHH
Confidence 98888999999999999999973 223333333322 2221 0233333332222211 0 00111112
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-------CCCCCHHHHHH
Q 003433 303 NSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-------NISPNVVTYST 374 (820)
Q Consensus 303 ~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ 374 (820)
..-+.--.. .+..+++.....+... ..-.++-......+.+..|+.-++. -..++..+|+.
T Consensus 234 ~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~ 302 (577)
T KOG1258|consen 234 EIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRY 302 (577)
T ss_pred HHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHH
Confidence 111111111 1122222222222211 1112222233333444444443332 11234678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
-++.-...|+.+.+.-+|+...--- ..=...|-..+.-....|+.+-|..++....+--.+..+.+.-.-....-..|+
T Consensus 303 yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n 381 (577)
T KOG1258|consen 303 YLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGN 381 (577)
T ss_pred HhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc
Confidence 8888899999999999998875321 111223333444444558888888887766554433333332222222345689
Q ss_pred HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCH
Q 003433 455 YDEVRRMFEQMKADCVSPNLL-TYSTLIDVYSKGGLYKEAM---QIFREFKQAGLKADVVLYSALIDA-----LCKNGLV 525 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~-----~~~~g~~ 525 (820)
++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. +++..... |-. +......+.-- +.-.++.
T Consensus 382 ~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 382 FDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred HHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHHHHHHhcCH
Confidence 999999999998873 5543 3333456667788888887 33333322 111 22222222221 2345788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 526 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 526 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
+.|..++.+|.+. ..++...|..++.-+...+
T Consensus 458 ~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 458 DLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 9999999999985 4556667888887665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.7 Score=45.42 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=83.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHchhCC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 339 TLLDAICKGAQMDLAFEIMAEMPAKN---ISPNVVTYSTMIDGYAK---AGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (820)
Q Consensus 339 ~ll~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 412 (820)
.|+-.|....+++..+++++.+...- +.-....-....-++-+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444666666777777766665531 00011111122333444 5666666666666444444556666665555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-- 490 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-- 490 (820)
.|-.. | .+.+ ..|.. ..++|+..|.+.-+. .+|..+--.++..+...|..
T Consensus 226 IyKD~---------~---~~s~-~~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------F---LESN-FTDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------H---HHcC-ccchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCccc
Confidence 44211 0 1111 01111 155666666655543 24433322222222222321
Q ss_pred --HHHHHHH---H-HHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 491 --KEAMQIF---R-EFKQAG---LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 491 --~~A~~~~---~-~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
.+..++- . .+.+.| -..|.-.+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1222222 1 111222 1235556677788888888888888888888875
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.14 Score=49.78 Aligned_cols=104 Identities=18% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhh
Q 003433 507 ADVVLYSALIDALCK-----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLD 581 (820)
Q Consensus 507 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~ 581 (820)
.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..-...-+ +.+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv--fQ~~F---------- 132 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV--FQKVF---------- 132 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH--HHHHH----------
Confidence 466666666666543 3557777778899999999999999999999886644322111 11100
Q ss_pred hhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 003433 582 AMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNS 660 (820)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~ 660 (820)
--|- +..+++++++++|...|+.||..+-..|++++.+.|-
T Consensus 133 ---------------------~HYP-----------------~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 ---------------------LHYP-----------------QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ---------------------hhCc-----------------hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 0010 1344699999999999999999999999999998774
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=54.91 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=55.8
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+..++.+..+...|.+.|++++|+..|++++..++.......+|..++.+|.+.|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888889999999999999999999886332211145888999999999999999999998874
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.067 Score=48.62 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTY 547 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 547 (820)
+...++..+...|++++|.++.+.+....+- |...|..+|.+|...|+..+|+++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445666777788888888888888776643 777888888888888888888888887753 3777776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.65 Score=49.38 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-ADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV--TYNSI 550 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l 550 (820)
..+-..|..+..+.|+.++|++.|++|.+.... -+......|+.++...+.+.++..++.+--+.. -|... .|+..
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaA 337 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAA 337 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHH
Confidence 334455667777888888888888888764322 134466778888888888888888888865432 23333 55554
Q ss_pred HHHHhhcCch---------------hhhHHhHHHHhhhhhhh
Q 003433 551 IDAFGRSATT---------------ECTVDDVERDLGKQKES 577 (820)
Q Consensus 551 l~~~~~~g~~---------------~~a~~~~~~~l~~~~~~ 577 (820)
+-.+...|+. ..|++.+.++++.+|..
T Consensus 338 LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 338 LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 4333222221 23456666777776654
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.38 Score=50.98 Aligned_cols=112 Identities=7% Similarity=0.016 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
.+..+|+++-++.++ +.| |......++.+....|+++.|...|+.+...+|+...+.....+.. -.|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 366789999999888 444 7788888888888889999999999999999998877655443322 478899999999
Q ss_pred HHHhhcCCCcch-hHHHHHHHHHhhcCchHHHHHHHHH
Q 003433 702 DEVKLMDSSTAS-AFYNALTDMLWHFGQKRGAQLVVLE 738 (820)
Q Consensus 702 ~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 738 (820)
+++++++|.-.. .+.-..+++|+.. ..++|++++-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 999999995432 2233344466655 56777777643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.32 Score=41.46 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=74.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV---YAFSALISAYG 239 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~ 239 (820)
.-+++..|+++.|++.|.+++.. .|....+|+.-..++.-+|+.++|+.=++++++..-..+. .+|..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34577889999999999999987 3566679999999999999999999999999875333232 23444556788
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003433 240 RSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~ 258 (820)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8999999999999887765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.65 E-value=2.4 Score=47.98 Aligned_cols=182 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
....-+..+.+...+.-|+.+-.. ++........+...-++.+.+.|++++|...|-+.+.. .+| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 445566667777777777766432 21111122234445566667778888887777665542 121 234555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
|....+..+-..+++.+.+.|+. +...-..|+.+|.+.+ +.++-.++.+.-. .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlk-d~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLK-DVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhc-chHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666677777777777777765 5555566777777777 6665555444332 2211 0112334555555666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 318 ARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
|..+-.+... ...+...+ +-..+++++|++.+..+.
T Consensus 482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 6555433322 22332222 233455666666665543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.19 Score=44.23 Aligned_cols=85 Identities=8% Similarity=0.047 Sum_probs=61.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
++..+..-.....+.|+|++|++.|+.+..+-+..+-...+...++.+|.+.|++++|...+++.++..+...-.-|-..
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455556666778899999999999988876555544556778899999999999999999999887543323334444
Q ss_pred HHHHH
Q 003433 235 ISAYG 239 (820)
Q Consensus 235 i~~~~ 239 (820)
+.+++
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=2.4 Score=41.38 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 271 (820)
.+|+.. ..-.+.|++++|.+.|+.+..+-+ +-...+...++-++.+.+++++|+..+++....-+......|..-|.
T Consensus 36 ~LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEG-LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344443 335678999999999999986532 12345566677788889999999999998887544334445555555
Q ss_pred HHH
Q 003433 272 ACG 274 (820)
Q Consensus 272 ~~~ 274 (820)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 544
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.2 Score=44.13 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
-...+...|++.+|...|..++... +.+..+...++.+|...|+++.|..++..+..............-|..+.+.
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 4555677778888888887777764 3333455677777888888888888777765432111111222233444444
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
....+..++-.+.-. .| |...-..+...+...| +.+.|.+.+-.+++
T Consensus 217 a~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g-~~e~Ale~Ll~~l~ 264 (304)
T COG3118 217 AATPEIQDLQRRLAA---DPDDVEAALALADQLHLVG-RNEAALEHLLALLR 264 (304)
T ss_pred hcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 444444444444433 13 4444444555555555 56666555555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.2 Score=42.65 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALC 520 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 520 (820)
.|.--..+|....++++|...+.+..+. .+.|...| -....++.|.-+.++|.+. .--+..|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666777777777766665431 11121111 1123345555555555542 112344555666778
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003433 521 KNGLVESAVSLLDEMTK 537 (820)
Q Consensus 521 ~~g~~~~A~~~~~~m~~ 537 (820)
.+|..+-|-..+++.-+
T Consensus 103 E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK 119 (308)
T ss_pred HhCCcchHHHHHHHHHH
Confidence 88887777777776543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.7 Score=44.01 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
|...+.+++.++.-.|+.++|.+..++|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 333444445555555555555555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.1 Score=41.96 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=71.2
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-hhHHHHHHHhccccchHHHHHHHHHHHhhcCCC
Q 003433 633 FQKMHKLKIKPNV-VTFSAILNACSRCNSFEDASMLLEELRLFDNQ-VYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 633 ~~~m~~~~~~Pd~-~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 710 (820)
|.+.+. +.|+. .+||.|+--+...|+++.|.+.|+...+.||. +|..++.-+.-|..|++.-|.+-+-+--+.||+
T Consensus 88 ftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~ 165 (297)
T COG4785 88 FSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN 165 (297)
T ss_pred hhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC
Confidence 444444 78874 45888888888999999999999999999996 454555444455788999999999998899996
Q ss_pred cchhHHHHHHHHHhhcC--chHHHHHHH
Q 003433 711 TASAFYNALTDMLWHFG--QKRGAQLVV 736 (820)
Q Consensus 711 ~~~~~~~~l~~~~~~~g--~~~~A~~~~ 736 (820)
+. |.+ .|+|...- +..+|..-+
T Consensus 166 DP---fR~-LWLYl~E~k~dP~~A~tnL 189 (297)
T COG4785 166 DP---FRS-LWLYLNEQKLDPKQAKTNL 189 (297)
T ss_pred Ch---HHH-HHHHHHHhhCCHHHHHHHH
Confidence 53 443 35665433 455666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.96 Score=40.93 Aligned_cols=70 Identities=19% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRIT 301 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~~ 301 (820)
+...++..+...|++++|+.+.+.+....+- |...|..+|.++...| +...|.+.|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g-~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQG-RRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555666666666666666553322 4555666666666666 56666666655532 355555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.098 Score=47.64 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCchhHHHHHHHhcc------c-----cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc-
Q 003433 661 FEDASMLLEELRLFDNQVYGVAHGLLMGY------R-----DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ- 728 (820)
Q Consensus 661 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 728 (820)
++.|++.++.....||.+...++++...+ + ...+++|+.-|++++.++|+. ...+.++|+.|...|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHhh
Confidence 45666666666667777776666553322 1 235778899999999999965 5568889999877653
Q ss_pred ---hHHHHHHHHHhhh
Q 003433 729 ---KRGAQLVVLEGKR 741 (820)
Q Consensus 729 ---~~~A~~~~~~~~~ 741 (820)
..+|..+|+++.+
T Consensus 86 ~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATE 101 (186)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
Confidence 4456666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.91 Score=50.07 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFN-SLLAVCSRGGLWEAARNLFNEMVHRG---IDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~g---~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.+.|.++++.+.+. -|+...|. .-.+.+...|++++|++.|++..... -+.....+--++..+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 567777777777665 33443332 33455666777777777777554311 0122344445666677777777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHHHHH
Q 003433 355 EIMAEMPAKNISPNVVTYSTMI-DGYAKAGRL-------DDALNMFSEMKF 397 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 397 (820)
+.|..+.+..-- +...|.-+. .++...|+. ++|.++|.+...
T Consensus 326 ~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777765322 233444333 234455666 777777776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.16 Score=45.86 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=41.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 380 AKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
...|++++|..+|.-+...+ .-+..-+..|...|-..+++++|+..|......+ ..|+..+.....+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 34555555555555544433 2233334444445555555555555554443332 233333444455555555555555
Q ss_pred HHHHHHHH
Q 003433 460 RMFEQMKA 467 (820)
Q Consensus 460 ~~~~~m~~ 467 (820)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.26 Score=50.86 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
.+++.+.-+|.+.+++.+|++.-.+.+..+ +.|....-.-..+|...|+++.|+..|+++++.. +.|..+-+.|+.+-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345556666666666666666666666655 4555555555666666666666666666666543 33444444444443
Q ss_pred HhcCCHHH-HHHHHHHHHH
Q 003433 450 GKQGKYDE-VRRMFEQMKA 467 (820)
Q Consensus 450 ~~~g~~~~-A~~~~~~m~~ 467 (820)
-+..+..+ ..++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 33333332 2445555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.17 E-value=4.3 Score=41.36 Aligned_cols=169 Identities=9% Similarity=0.049 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHH
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKE----MESSG-IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD-CVSP---NLL 475 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~ 475 (820)
.+|..+..+.++.|.+++++..--. ..+.. -..-...|..+..++.+.-++.+++.+-..-... |..+ -..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455556666666666655433211 11100 0001233444555555555555555554433321 1222 112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAG-----LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPNVVT 546 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 546 (820)
...++..++.-.+.++++++.|+...+.- .-....++-.|.+.|.+..++++|.-+..++.+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 23345566666677788888777765421 1122456777888888888888887776665432 33222222
Q ss_pred HH-----HHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 547 YN-----SIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 547 ~~-----~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
|. .+.-++...|.+..|.+..+++.+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 32 2233455566666665555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.25 Score=48.48 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=52.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCC
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSALISAYGRSGY 243 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~ 243 (820)
+...|++..|.+.|...++..+...-...++.-|+..+...|++++|..+|..+.+.-+. .-...+..|.....+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 444555666666666666654433333345555666666666666666666666553211 113455566666666666
Q ss_pred hhHHHHHHHHHHh
Q 003433 244 CQEAISVFNSMKR 256 (820)
Q Consensus 244 ~~~A~~~~~~m~~ 256 (820)
.++|..+|+++.+
T Consensus 231 ~d~A~atl~qv~k 243 (262)
T COG1729 231 TDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666655
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.15 E-value=3.4 Score=40.16 Aligned_cols=219 Identities=18% Similarity=0.144 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAARNLFNEMVHR-GIDQDIFTYNTLLDAICKGAQMDLAFEIM 357 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 357 (820)
...+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444433221 12344555555556666666666666555531 12233445555555555566666666666
Q ss_pred HHchhCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 358 AEMPAKNISPNVVTYSTMID-GYAKAGRLDDALNMFSEMKFLGI--GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG 434 (820)
Q Consensus 358 ~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 434 (820)
.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.......
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 6655532221 112222222 55666666666666666544210 0122233333333455556666666666555433
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 435 IRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 435 ~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
.. ....+..+...+...+++++|...+...... .++ ...+..+...+...+..+++...+....+
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 -PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred -cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2445555555555556666666666655543 222 22333333333344455555555555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.16 Score=43.15 Aligned_cols=91 Identities=9% Similarity=0.018 Sum_probs=66.2
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc-cchHHHHHHHHHHHhhcCCCcc---hhHHHHHHHHHhhcCch
Q 003433 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR-DNIWVQALSLFDEVKLMDSSTA---SAFYNALTDMLWHFGQK 729 (820)
Q Consensus 654 a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 729 (820)
+.+..|++++|++.|.+.+..-|+...+.++-...++ +|+.++|..-+++++++..... -..|.--+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4566788888888888888777776666666555554 6777788888888887643222 23466677789999999
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
+.|+.-|..+.+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.01 E-value=7.8 Score=43.54 Aligned_cols=322 Identities=15% Similarity=0.105 Sum_probs=166.3
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCC
Q 003433 223 GYGNTVYAFS-----ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQ 296 (820)
Q Consensus 223 ~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~~A~~~~~~m~~~g~~ 296 (820)
|++.+..-|. .+|+-+...+.+..|+++-..+...-.. +...|.....-+.+.. ..-+++++..++=+..-.
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4454544443 4566677778888888887776541111 1344444455454442 112333333333222212
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHH
Q 003433 297 PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID----QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTY 372 (820)
Q Consensus 297 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 372 (820)
-....|..+.+-....|+.+.|..+++.=...+-. .+..-+..-+.-..+.|+.+....++-.+... .+...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence 34556777777777888888888776533222100 00111222233344455555555554444332 011111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHH----HCCCCCCHHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC-KEME----SSGIRKDAVTYNALLG 447 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~-~~~~----~~~~~~~~~~~~~li~ 447 (820)
. .-..+.-.|..+|.+..+.. |.. .|-+.|-...+...+-.+. +... ..+..|+. .....
T Consensus 582 ~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~ 646 (829)
T KOG2280|consen 582 F------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAAN 646 (829)
T ss_pred H------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHH
Confidence 1 11233445666666654421 111 1223333333332222211 1110 11212222 22333
Q ss_pred HHHhcCC----------HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 448 GYGKQGK----------YDEVRRMFEQMKA-DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 448 ~~~~~g~----------~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
.+.+... ..+-.++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ .||-..|..-+
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKL 722 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHH
Confidence 4443332 1122223333322 2222333455556666777899999999887765 37999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 517 DALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
.++...+++++-+++-+.+. .+.-|.-++.+|.+.|+.+||.+++-+.-.+.
T Consensus 723 ~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ 774 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ 774 (829)
T ss_pred HHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCChH
Confidence 99999999998877666554 24456678889999999999999887655554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.3 Score=41.22 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=75.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 308 VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 308 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
.....|++.+|..+|+...... +.+...-..|+.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3455667777777777666653 223445556677777777777777777776654211112222233444455544444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g 453 (820)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+.+. -.|...-..|+..+.-.|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444332 33555556666666677777777666655543211 123344444555444444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.47 Score=41.40 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
|..++.+++.++++.|+++....+++..- |+..+.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 34556666666666666666666665432 1221110 00000 1112345688999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhcCc
Q 003433 518 ALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRSAT 559 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~ 559 (820)
+|+.+|++..|+++++...+. ++.-+..+|..|+.-+...-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998754 777788899999986654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.83 E-value=1.4 Score=39.62 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=19.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444455555555555444432 344444444444443
|
|
| >KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=57.41 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 003433 649 SAILNACS 656 (820)
Q Consensus 649 ~~ll~a~~ 656 (820)
+-...+|-
T Consensus 720 ~~F~~~~k 727 (830)
T KOG1923|consen 720 VRFVRAYK 727 (830)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.67 E-value=5.8 Score=40.45 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=59.9
Q ss_pred HcCCCHHHHHHHHHHHHHcc-cccCChh----HHHHHHHHHHHhcC-ChHHHHHHHHHHHHc--------CCCCC-----
Q 003433 167 GNRGEWSKAIQCFAFAVKRE-ERKNDQG----KLASAMISILGRLG-KVDLAKNIFETALNE--------GYGNT----- 227 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~----- 227 (820)
.+.|+++.|..++.++.... ...+... ..+..++....+.+ ++++|...++++.+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45788888888888876643 2222211 12223344444555 777777666665432 01111
Q ss_pred HHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 228 VYAFSALISAYGRSGYCQ---EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
..++..|+.+|...+..+ +|..+++.+...... ....+..-+..+.+.+ +.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~-~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSF-DEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccC-ChhHHHHHHHHHHHh
Confidence 234445555555554433 334444444322211 1233333344444444 555555555555554
|
It is also involved in sporulation []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.64 E-value=13 Score=44.25 Aligned_cols=271 Identities=17% Similarity=0.157 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 003433 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSG--YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFD 288 (820)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~ 288 (820)
..-+..+....+. .|+ .-...+|..|.+.+ .++.|+....+...... .++-...+..++ -+-.+-.+|+
T Consensus 775 ~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~---~~~ad~al~hll----~Lvdvn~lfn 845 (1265)
T KOG1920|consen 775 SVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV---AVSADEALKHLL----FLVDVNELFN 845 (1265)
T ss_pred HHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc---chhHHHHHHHHH----hhccHHHHHH
Confidence 3333344444332 334 44567888899888 77888887777764211 111111111111 1112222222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC
Q 003433 289 DMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN 368 (820)
Q Consensus 289 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 368 (820)
.++.. . |. =-+++-+-..+.|..+-+-+++++.+. +.+.. ...|+. ..++++.|+.-+.++..
T Consensus 846 ~ALgt-Y--Dl--~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~r--kF~ID~--~L~ry~~AL~hLs~~~~------ 908 (1265)
T KOG1920|consen 846 SALGT-Y--DL--DLALLVAQKSQKDPKEYLPFLNELKKM--ETLLR--KFKIDD--YLKRYEDALSHLSECGE------ 908 (1265)
T ss_pred hhhcc-c--ch--HHHHHHHHHhccChHHHHHHHHHHhhc--hhhhh--heeHHH--HHHHHHHHHHHHHHcCc------
Confidence 22210 0 00 011222233344555555555555432 11111 011222 23556666666666542
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVS----YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
..|.-.++.--+.|.+.+|+.++ .++... |.+-.+-+.+...+++|.-+|+..-+. .-
T Consensus 909 -~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ek 970 (1265)
T KOG1920|consen 909 -TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EK 970 (1265)
T ss_pred -cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HH
Confidence 23344455555677777777666 334433 333344445566677776666544211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLL--TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
-+.+|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+.... . .-.+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhH
Confidence 456677777777777777766432 1222 2245666666677777777766665431 1 1234445666
Q ss_pred CCHHHHHHHHHHHH
Q 003433 523 GLVESAVSLLDEMT 536 (820)
Q Consensus 523 g~~~~A~~~~~~m~ 536 (820)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 66777776655544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.6 Score=48.12 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=120.9
Q ss_pred HHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCh
Q 003433 175 AIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTV------YAFSALISAYGR----SGYC 244 (820)
Q Consensus 175 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~ 244 (820)
..-+|.-++.. .|+ .+..++...+-.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ....
T Consensus 176 G~G~f~L~lSl---LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 176 GFGLFNLVLSL---LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHh---CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 35667777765 233 4567889999999999999999988764322222 234444444443 4567
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDA-CGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVCSRGGLWEAARN 320 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~A~~ 320 (820)
+.|.++++.+.+. -|+...|...-.- +...| ++++|++.|++..... .+.....+--+.-.+.-..+|++|..
T Consensus 250 ~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g-~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 250 EEAEELLEEMLKR--YPNSALFLFFEGRLERLKG-NLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc-CHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 8899999999874 4777777655443 45566 9999999999766421 12234556667777888999999999
Q ss_pred HHHHHHHCCCCCCHHHHH-HHHHHHHhcCCH-------HHHHHHHHHchh
Q 003433 321 LFNEMVHRGIDQDIFTYN-TLLDAICKGAQM-------DLAFEIMAEMPA 362 (820)
Q Consensus 321 ~~~~~~~~g~~~~~~~~~-~ll~~~~~~g~~-------~~A~~~~~~m~~ 362 (820)
.|..+.+..-- ...+|. ....++...|+. ++|.++|.++..
T Consensus 327 ~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 327 YFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999986422 222232 334455667777 899999988764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.50 E-value=1 Score=48.84 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=34.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 3455555554433221 2444555555555555555555555554321 233444445555555555
Q ss_pred HHHHHHHHC
Q 003433 495 QIFREFKQA 503 (820)
Q Consensus 495 ~~~~~m~~~ 503 (820)
++.+.....
T Consensus 394 kl~~~a~~~ 402 (443)
T PF04053_consen 394 KLAKIAEER 402 (443)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 554444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.11 Score=35.54 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
++..+..+|...|++++|+++|+++++.+|++..++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 45677888888888888888888888888777665443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.5 Score=45.15 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.++...-+..+.+.-+++-.+++..++ +-..+|..|. --...-..+|.++|+++++.|-. . +......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~p---dCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~---lg~s~~~ 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINP---DCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----S---LGKSQFL 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhh---hhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----h---hchhhhh
Confidence 355555667777777777777877642 2222433322 22345678888888888775311 1 1111000
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHH
Q 003433 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+ ..-..++.+..+...+-..+-..+..++-+.| +.++|++.|++|.+.... -+......|+.++...+.+.++.
T Consensus 241 ~----~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG-r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 241 Q----HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG-RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred h----cccchhhhhhccccchhhhhHHHHHHHHHHhC-ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 0 00011111222222222333344566666777 788888888888765322 13346677888888888888888
Q ss_pred HHHHHHHHC
Q 003433 320 NLFNEMVHR 328 (820)
Q Consensus 320 ~~~~~~~~~ 328 (820)
.++.+..+.
T Consensus 316 ~lL~kYdDi 324 (539)
T PF04184_consen 316 ALLAKYDDI 324 (539)
T ss_pred HHHHHhccc
Confidence 888877654
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.36 Score=46.95 Aligned_cols=70 Identities=20% Similarity=0.374 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 244 CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV---------------DFKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 244 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~---------------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
++--...++.|.+.|+..|..+|+.||+.+-+... +-+-+++++++|...|+.||..+-..|+++
T Consensus 88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~ 167 (406)
T KOG3941|consen 88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNA 167 (406)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 33334445556666666666666666665543320 123445555555555555555555555555
Q ss_pred HHhCC
Q 003433 309 CSRGG 313 (820)
Q Consensus 309 ~~~~g 313 (820)
+.+.+
T Consensus 168 FGr~~ 172 (406)
T KOG3941|consen 168 FGRWN 172 (406)
T ss_pred hcccc
Confidence 54444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=9.2 Score=40.98 Aligned_cols=204 Identities=14% Similarity=0.185 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
|....-+++..+...-+..-...+..+|+..| -+-..|..++..|..+ ..++-..+++++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33344455555555555555555555555544 2445555555555555 335555555555554332 3333333444
Q ss_pred HHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHH
Q 003433 553 AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGV 632 (820)
Q Consensus 553 ~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 632 (820)
.|-+ ++.+.+...+.+++..+.... ...++-..+.++..- .| .+.+.-+.+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~------------------q~~~i~evWeKL~~~-i~---------dD~D~fl~l 191 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRR------------------QNAAIKEVWEKLPEL-IG---------DDKDFFLRL 191 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchh------------------hhhhHHHHHHHHHHh-cc---------ccHHHHHHH
Confidence 3333 555555555555554433211 001112222222100 00 033334444
Q ss_pred HHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc---------------------
Q 003433 633 FQKMHK-LKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR--------------------- 690 (820)
Q Consensus 633 ~~~m~~-~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 690 (820)
..+... .|..--.+.+..+-.-|.-..+++||++++.-+++.|..+....-+++-.++
T Consensus 192 ~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~ 271 (711)
T COG1747 192 QKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQS 271 (711)
T ss_pred HHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhc
Confidence 444432 3333345566666677888889999999988888887777666555432211
Q ss_pred cchHHHHHHHHHHHhhcCC
Q 003433 691 DNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 691 ~~~~~~A~~~~~~~~~~~~ 709 (820)
..++.++..-|++.+..+-
T Consensus 272 ~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 272 GRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred cccHHHHHHHHHHHheecc
Confidence 1245567777777765433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.23 E-value=5.4 Score=38.19 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch----hHHHHHHH----hcccc
Q 003433 625 EILCILGVFQKMHKL--KIKPNV---VTFSAILNACSRCNSFEDASMLLEELRLFDNQV----YGVAHGLL----MGYRD 691 (820)
Q Consensus 625 ~~~~Al~~~~~m~~~--~~~Pd~---~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~----~~~~~~~~----~~~~~ 691 (820)
++++|+..|++.-+. |-+-+. ..+.-+..--+..|++.+|+++|+++.....++ |++-..++ ..+..
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 555666666665431 111121 123333333456789999999999876432222 22211111 11123
Q ss_pred chHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHH
Q 003433 692 NIWVQALSLFDEVKLMDSSTA-SAFYNALTDML 723 (820)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 723 (820)
.+.-.+...+++-.+++|.-. ..-+.-|-+++
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 455567777777788888432 22244444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.19 E-value=13 Score=42.46 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
....-+..+.+...++.|..+...-. .+++ .......++.+.+.|++++|...|-+.+.. +.|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 34567788888888888887765432 2222 223334445566789999999888777642 2332 34555
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
|.... ....-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++
T Consensus 407 fLdaq-~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQ-RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHH-HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 55555 667777788888888876 55666778889999998888777665544 2211 1113345666666677777
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
|..+-.+... +...... .+-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 7666555432 2333333 344578888888888765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.9 Score=46.81 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 380 (820)
-.+.+++.+-+.|..+.|+++-..-. .-.+...+.|+++.|.++.++.. +...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~------~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD------DPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS------THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC------cHHHHHHHHHHHH
Confidence 34555555555555555555432211 12334445555665555544332 4455666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRR 460 (820)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 460 (820)
+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....| -+|....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 66666666655554321 3344445555555555555554444433 12333333344455554444
Q ss_pred HHH
Q 003433 461 MFE 463 (820)
Q Consensus 461 ~~~ 463 (820)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.48 Score=46.53 Aligned_cols=97 Identities=21% Similarity=0.248 Sum_probs=74.4
Q ss_pred HHHHHHHHHhccCCcc---hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHH
Q 003433 125 AEEALHHVTAFARDDV---SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMIS 201 (820)
Q Consensus 125 ~~~~l~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 201 (820)
.+.++.++.. +..+. .+...++.++.....++.+.+|...+...|++++|...|..+.+.-+..+.-...+..|+.
T Consensus 145 Y~~A~~~~ks-gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLYKS-GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4455655543 22222 3333444455555578899999999999999999999999999976655555567888999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003433 202 ILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 202 ~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+..+.|+.++|..+|+++.++
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999987
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.04 E-value=13 Score=42.08 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHcC
Q 003433 209 VDLAKNIFETALNEGYGNTVYAFSALISA-----YGRSGYCQEAISVFNSMKR-------YNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 209 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~ 276 (820)
...|.++++.+.+.| ++.....++.+ +....+.+.|+.+|+.+.+ .| +....+.+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457788888887765 33333333333 3355678888888887765 33 223444555555543
Q ss_pred C---C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 003433 277 G---V-DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----G 347 (820)
Q Consensus 277 g---~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~ 347 (820)
. . +.+.|+.+|.+....|.. +...+...+..... ..+...|.++|....+.| .+..+-.+..+|.. .
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence 2 1 345677777777766543 43333222222222 235667777777777766 23333333333322 2
Q ss_pred CCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 348 AQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 348 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
.+.+.|..++.+..+.|. |-..--...+..+.. ++++.+...+..+.+.|
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 356666667666666651 111111112222222 55555555555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.14 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.121 Sum_probs=13.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKR 185 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 185 (820)
+..+...|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.2 Score=41.31 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=63.3
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhc------cccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMG------YRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
=++-+.+.|++++|..-|..+++.-|....-.-.++.+ .+.+.|+.|+.---++++++|.... .+.--+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence 34556788888888888888877655444332222221 2467788888888888888885533 3556677888
Q ss_pred hcCchHHHHHHHHHhhhhhh
Q 003433 725 HFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 725 ~~g~~~~A~~~~~~~~~~~~ 744 (820)
+..++++|.+-+++..+...
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 88888888888877665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.99 Score=39.39 Aligned_cols=47 Identities=13% Similarity=0.015 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMES-SGIRKDAVTYNALLG 447 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~ 447 (820)
.|+..+..+++.+|+..|++..|+++.+...+ -+++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34444444444444444444444444444321 233334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.76 E-value=8.9 Score=39.10 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 405 VSYNTVLSIYAKLGRFE---EALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
.++..|+.+|...+..+ +|..+++.+.... ...+.++..-+..+.+.++.+++.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34566677777766544 4455555553322 2234455455566666778888888888887652 21223333344
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 482 DVY---SKGGLYKEAMQIFREFKQAGLKADV 509 (820)
Q Consensus 482 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 509 (820)
..+ ... ....|...++.++...+.+..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 333 332 334555666655544344433
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.2 Score=36.36 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=9.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003433 234 LISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
+|..+...+.......+++.+..
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~ 35 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALK 35 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHc
Confidence 33333333444444444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.15 Score=32.58 Aligned_cols=32 Identities=16% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.+|..++.+|...|++++|...|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999998888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=13 Score=39.99 Aligned_cols=67 Identities=18% Similarity=0.109 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 003433 190 NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 190 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 257 (820)
+.+..+|..-+..+-+.+.+.+..++|..|+... +.++..|-.-..- |-.+-+++.|..+|.+-++.
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3345566666665555555666666666666542 2345555433332 22233366666666666553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.6 Score=42.32 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=103.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH--HH--HHHHcCCC
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNA--VI--DACGKGGV 278 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--ll--~~~~~~g~ 278 (820)
+...|++.+|...++++++. ++-|..++.-.-+++..+|+.+.-...++++... ..++...|.. -+ -++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g- 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG- 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc-
Confidence 45678888888888888875 5567888888888888888888888888888743 1244433322 22 2335667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
-+++|.+.-++..+.+.. |...-.++...+--.|+..++.+...+-... +--.-...|=...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 788888888888876433 6667777777777888888888876654322 100112223334445666789999999
Q ss_pred HHHHc
Q 003433 356 IMAEM 360 (820)
Q Consensus 356 ~~~~m 360 (820)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 99754
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.14 E-value=2.3 Score=37.61 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCV--SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 521 (820)
-.....+.|++++|.+.|+.+..+-- +-....-..|+.+|.+.+++++|...+++.++..+.-.-+-|...+.+++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34445566777777777777766521 112334455677777777777777777777776543333444444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.11 E-value=20 Score=41.28 Aligned_cols=185 Identities=15% Similarity=0.186 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHc-ccccCChhHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhH
Q 003433 174 KAIQCFAFAVKR-EERKNDQGKLASAMISILG-RLGKVDLAKNIFETALNEGYGNT-----VYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 174 ~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~ 246 (820)
.|+++++-+.+. ...+.....++..++..|. ...++++|+..+++.......++ -.....++..|.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 356666666532 1112223445556666666 56778888888877754322222 122335566666666665
Q ss_pred HHHHHHHHHhCC----CCCCHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH--HhCCCHH
Q 003433 247 AISVFNSMKRYN----LKPNLVTYNAV-IDACGKGGVDFKHVVEIFDDMLRNG---VQPDRITFNSLLAVC--SRGGLWE 316 (820)
Q Consensus 247 A~~~~~~m~~~~----~~p~~~~~~~l-l~~~~~~g~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~--~~~g~~~ 316 (820)
|...+++.++.- ..+-...+..+ +..+...+ ++..|.+.++.....- ..+...++..++.+. .+.+..+
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~-d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHK-DYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 777777765421 11111222222 22222335 6777777777766432 222333444444433 2344455
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHc
Q 003433 317 AARNLFNEMVHRGI---------DQDIFTYNTLLDAIC--KGAQMDLAFEIMAEM 360 (820)
Q Consensus 317 ~A~~~~~~~~~~g~---------~~~~~~~~~ll~~~~--~~g~~~~A~~~~~~m 360 (820)
++.+..+++..... .|-..+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56655555533211 223455555555543 355555555554443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=8.3 Score=38.93 Aligned_cols=114 Identities=9% Similarity=0.024 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...+++++.. +++-...+-..+.-++..+|-+++|++
T Consensus 118 ~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred cccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 445555555555554 2335555555555566666666666666665543 111112222333444455666666666
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSE 394 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 394 (820)
.-++..+.+. .|...-.++...+-..|++.++.+.+.+
T Consensus 197 ~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 197 QADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666555432 2455555555666666666666665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.89 E-value=9.2 Score=39.16 Aligned_cols=128 Identities=16% Similarity=0.260 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--CC---CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC---
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGK--GG---VDFKHVVEIFDDMLRNGV---QPDRITFNSLLAVCSRGGL--- 314 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~g---~~~~~A~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~g~--- 314 (820)
+.+.+++.|.+.|++.+..+|-+....... .. .....|..+|+.|.+.-. .++..++..|+.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555555555555555444332222211 11 023455566666665421 2233444444333 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 315 -WEAARNLFNEMVHRGIDQDI--FTYNTLLDAICKGAQ--MDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 315 -~~~A~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
.+.++.+|+.+.+.|+..+- .....++........ ...+.++++.+.+.|++.....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23444555555554443221 122222222111111 23455555555555555444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.65 E-value=6.2 Score=34.11 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=29.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
-++.+...|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3444555555555555555554332 4555555556666666666666666666655554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.21 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGK 740 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~ 740 (820)
|..|+++|.+.|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7889999999999999999999865
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.41 E-value=14 Score=37.77 Aligned_cols=25 Identities=20% Similarity=0.555 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 491 KEAMQIFREFKQAGLKADVVLYSAL 515 (820)
Q Consensus 491 ~~A~~~~~~m~~~~~~p~~~~~~~l 515 (820)
..+.++++.+.+.|++.....|..+
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHH
Confidence 3455556666666655555555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.27 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
.|..++..|.+.|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4566777788888888888888887776664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.36 E-value=8.5 Score=35.03 Aligned_cols=125 Identities=16% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHH--HHHcCCC
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTV-YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVID--ACGKGGV 278 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~--~~~~~g~ 278 (820)
+.+.+..++|+.-|..+.+.|...-. -..--........|+...|+..|+++-.....|-.. -...|=. .+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~g- 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNG- 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccc-
Confidence 45667777888888877776654221 122223344566777778888888776544444333 1111222 234566
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+++.....+-+...+-.--...-..|.-+-.+.|++..|.+.|.++...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 67776666666554443333344455666666777777777777776653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=7.9 Score=35.25 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=92.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVY---AFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l 234 (820)
.|..-++ +.+.+..++|+..|....+.+...-+ .-..-.+.......|+...|...|+++-+....|-.. .-.--
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp-vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP-VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch-HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3433333 67788999999999999887643322 2233456677888999999999999997754444332 11112
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~ 298 (820)
.-.+..+|.+++.....+-+...+-.--...-..|.-+-.+.| ++.+|.++|..+......|-
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kag-d~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAG-DFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhcc-chHHHHHHHHHHHccccCcH
Confidence 2245678999998888887765332222334455666667889 99999999999887544443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.29 E-value=6.9 Score=33.83 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
+...+..+...|+-|+-.+++..+.+.+ +++....-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3334444445555555555555444321 3344444445555555555555555554444443
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.22 E-value=12 Score=36.51 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH----HHhhcCchhhhHHhHHHHhhhhh
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIID----AFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
..|..-|..|..+.+-..-..+|++.+.. .-.|.+.+...+-. ...+.|.+++|-.-+.++.+...
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 34555566666666666666677766532 22344443332222 12455667766665555555433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.5 Score=43.80 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (820)
.++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45666777888888888888888888887654 788888888899999988888888888765 488888888877
Q ss_pred HHHHH
Q 003433 550 IIDAF 554 (820)
Q Consensus 550 ll~~~ 554 (820)
...+.
T Consensus 233 y~~~~ 237 (280)
T COG3629 233 YEEIL 237 (280)
T ss_pred HHHHh
Confidence 77663
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.18 E-value=12 Score=36.48 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHchhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHHcCCH
Q 003433 349 QMDLAFEIMAEMPAKNISPNV---VTYSTMIDGYAKAGRLDDALNMFSEMKFL---GI--GLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~d~~~~~~li~~~~~~g~~ 420 (820)
+.++|+.-|++..+..-..-. .+...+|..+.+.|++++.++.+.+|... .+ .-+..+.|++++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 445555555554432111111 12334556666666666666666665421 00 12334556666665555555
Q ss_pred HHHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHH
Q 003433 421 EEALLVCKEMESS-GIRKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-----------PNLLTYSTLIDVY 484 (820)
Q Consensus 421 ~~A~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~ 484 (820)
+--.+.|+.-++. .-..| -.|-.-|...|...+.+.+..++++++...... .=...|..-|++|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5444444332110 00111 123345667777777777777777776543211 1135567778888
Q ss_pred HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHH----CCCCCCHH---HHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAG-LKADVVLYSAL----IDALCKNGLVESAVSLLDEMTK----EGIRPNVV---TYNSIID 552 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~---~~~~ll~ 552 (820)
....+-.+...++++.+... -.|.+.....+ .....+.|++++|-.-|-++-+ .| .|-.. -|..|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHHH
Confidence 88888788888888765421 22444433322 1234577888888654444432 23 33333 3455556
Q ss_pred HHhhcC
Q 003433 553 AFGRSA 558 (820)
Q Consensus 553 ~~~~~g 558 (820)
.+.+.|
T Consensus 281 MLmkS~ 286 (440)
T KOG1464|consen 281 MLMKSG 286 (440)
T ss_pred HHHHcC
Confidence 665554
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.02 E-value=18 Score=42.55 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHH--HHHHHhcCChHHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAM--ISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
+..=+..+.+..++++|+.+-+.....++...........+ +--+..+|++++|...|+++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 55556667777778888887765544322111111111111 1235677888899888888854
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.27 Score=31.90 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
+|..|+.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999965
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.38 Score=30.46 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
..+..++.+|.+.|++++|++.++++.+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 357788899999999999999888876543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.26 E-value=9 Score=34.69 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=55.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC
Q 003433 200 ISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD 279 (820)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 279 (820)
+..-.+.++.+++..+++.+.-..+. ....-..-...+.+.|++.+|+.+|+++.+.+ |....-..|+..|.... .
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~-~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL-G 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc-C
Confidence 33445667788888888877664322 23333344556677888888888888877643 34444455555555444 2
Q ss_pred HHHHHHHHHHHHHCCCCCCH
Q 003433 280 FKHVVEIFDDMLRNGVQPDR 299 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~ 299 (820)
-..-...-+++.+.+..|+.
T Consensus 93 D~~Wr~~A~evle~~~d~~a 112 (160)
T PF09613_consen 93 DPSWRRYADEVLESGADPDA 112 (160)
T ss_pred ChHHHHHHHHHHhcCCChHH
Confidence 23444445556665444333
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.14 E-value=23 Score=41.78 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHHH
Q 003433 203 LGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~ 220 (820)
+.+.+++++|..+...|.
T Consensus 1007 ~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 1007 SIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHhhccHHHHHHHHHHHh
Confidence 344456666666555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=2.6 Score=39.20 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=59.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+.+.+...+++++|..-+++.+.......-...+-..|.+.....|.+|+|..+++.....+. .......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 566777777888888777777754211111122334566777777777777777777655321 233344556677777
Q ss_pred CChhHHHHHHHHHHhCC
Q 003433 242 GYCQEAISVFNSMKRYN 258 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~ 258 (820)
|+-++|+.-|+...+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777776643
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=36 Score=39.26 Aligned_cols=389 Identities=9% Similarity=0.011 Sum_probs=200.1
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 219 (820)
..+...+...+.-+.....-..-+..+.+.++|.+.++++.. .+.+.......+.++...|+.++|......+
T Consensus 83 ~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~l 155 (644)
T PRK11619 83 VQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-------KPKPVEARCNYYYAKWATGQQQEAWQGAKEL 155 (644)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444432222222223355566778888877763311 2344445566778888889988888877777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHH--HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQEAI--SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR----- 292 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~----- 292 (820)
-..|.. .....+.+...+.+.|.+.... +-++.+...| +...-..++..+. . +.....+.+..+.+
T Consensus 156 W~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~--~-~~~~~a~a~~al~~~p~~~ 228 (644)
T PRK11619 156 WLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLP--A-DYQTIASALIKLQNDPNTV 228 (644)
T ss_pred hccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcC--h-hHHHHHHHHHHHHHCHHHH
Confidence 655533 4567788888888777655432 2222223221 2222222222221 0 11111111111111
Q ss_pred ----CCCCCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 293 ----NGVQPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHRG-IDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 293 ----~g~~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g-~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
..+.++...-..++-++ ....+.+.|..++..+.... +.+. ..++..+.......+...+|...++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~ 308 (644)
T PRK11619 229 ETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR 308 (644)
T ss_pred HHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc
Confidence 01122322222122222 13456688999998875442 2221 234455554444544467788888876544
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 364 NISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443 (820)
Q Consensus 364 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 443 (820)
.. |.......+....+.++++.+...+..|.... .-...-.--+..++...|+.++|...|+.+.. .. +|.
T Consensus 309 ~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fY 379 (644)
T PRK11619 309 SQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFY 379 (644)
T ss_pred cC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcH
Confidence 32 33444445556668999999999998885542 22344455667777778999999999998743 12 232
Q ss_pred HHHHHHHhcCCH---HH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 444 ALLGGYGKQGKY---DE--VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA 518 (820)
Q Consensus 444 ~li~~~~~~g~~---~~--A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 518 (820)
.++.. .+.|.. .. .... .... ..+. -..-+..+...|...+|...+..+.+. .+......+...
T Consensus 380 G~LAa-~~Lg~~~~~~~~~~~~~-~~~~----~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~ 448 (644)
T PRK11619 380 PMVAA-QRLGEEYPLKIDKAPKP-DSAL----TQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARY 448 (644)
T ss_pred HHHHH-HHcCCCCCCCCCCCCch-hhhh----ccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Confidence 22221 111211 00 0000 0000 0000 112234555678888888888877764 345555556666
Q ss_pred HHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhhcCchhhhH
Q 003433 519 LCKNGLVESAVSLLDEMTKEG----IRPNVVTYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 519 ~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~g~~~~a~ 564 (820)
..+.|..+.++.........+ --|. .|...+..+++.-.++.+.
T Consensus 449 A~~~g~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 449 AFNQQWWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred HHHCCCHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHH
Confidence 667777777776655432210 0121 3555566555554555443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.80 E-value=25 Score=37.30 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=31.2
Q ss_pred HHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003433 144 DILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVK 184 (820)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 184 (820)
.+...+...+-..+.+..+...+.++|+.+.|.++.++++-
T Consensus 28 ~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 28 ALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344455678888899999999999999999998864
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.48 E-value=1.4 Score=40.31 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc------------ccchHHHHHHHHHHHhhcCCCc
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY------------RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
..+++|+.-|++++.++|..+..+.++...+ ....+++|...|++++..+|++
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3567777778888889999888887775443 1245888999999999999964
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.47 E-value=16 Score=34.64 Aligned_cols=86 Identities=23% Similarity=0.227 Sum_probs=54.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
..|-.+.|+-=|...+...+. -+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|..| -.| ++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~g-R~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGG-RYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecC-chHhhH
Confidence 334445555555555554322 46788888888889999999999999888754332333334444433 345 678887
Q ss_pred HHHHHHHHC
Q 003433 285 EIFDDMLRN 293 (820)
Q Consensus 285 ~~~~~m~~~ 293 (820)
+-|.+.-+.
T Consensus 154 ~d~~~fYQ~ 162 (297)
T COG4785 154 DDLLAFYQD 162 (297)
T ss_pred HHHHHHHhc
Confidence 777776655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=1.1 Score=44.85 Aligned_cols=107 Identities=15% Similarity=0.049 Sum_probs=70.9
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH-Hhc-cccchHHHH
Q 003433 621 RCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL-LMG-YRDNIWVQA 697 (820)
Q Consensus 621 ~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~A 697 (820)
...|+++||+.+|.+.+. +.| |.+++..-..||.+..++..|+.=...++.+|.. |.-.+.- ..+ ..-|+..+|
T Consensus 108 FKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHHHH
Confidence 345689999999998776 778 8999999999999999998887766666543321 1100100 001 134788999
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 698 LSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
.+-++.+++++|++ +-|-..|.+.....|+.-+
T Consensus 185 KkD~E~vL~LEP~~-----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 185 KKDCETVLALEPKN-----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHhHHHHHhhCccc-----HHHHHHHHHhcchHhhhHH
Confidence 99999999999964 2344444444444444433
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.20 E-value=71 Score=41.58 Aligned_cols=324 Identities=11% Similarity=0.099 Sum_probs=171.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003433 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR 240 (820)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 240 (820)
.+..+-.+.+.|.+|+..++.-.............+..+-..|+..+++|....+...-.. .++ ...-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3555667788999999999873111111112233455555699999999998888775221 222 3345556778
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHH
Q 003433 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL-LAVCSRGGLWEAAR 319 (820)
Q Consensus 241 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~ 319 (820)
.|++++|...|+.+.+.+.. ...+++.++......+ .++.++-..+-.... ..+....++++ +.+--+.+++|...
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~-~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQ-HLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhccc-chhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 89999999999999975422 4677888888777777 777777755555433 22233334333 33446777888777
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHH--HHHHHHHHchhC--------CCC-CCHHHHHHHHHHHHHcCCHH
Q 003433 320 NLFNEMVHRGIDQDIFTYNTL--LDAICKGAQMD--LAFEIMAEMPAK--------NIS-PNVVTYSTMIDGYAKAGRLD 386 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~l--l~~~~~~g~~~--~A~~~~~~m~~~--------g~~-p~~~~~~~li~~~~~~g~~~ 386 (820)
..+. +. +..+|.+. +....+..+-| .-.+.++.+.+. +.. .-...|..++....-..--.
T Consensus 1539 ~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 7665 21 23333332 23322222111 111222222211 110 01123333333322211111
Q ss_pred HHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 003433 387 DALNMFSEMK-FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM-ESS----GIR-KDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 387 ~A~~~~~~m~-~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
. .+.+.... .....-+..-|..-+..-....+..+-+-.+++. ... +.. .-..+|-...+...+.|+++.|.
T Consensus 1612 ~-~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1612 S-IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred H-HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 1 11111100 0000111111222222211112222222222221 111 111 22467888888888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504 (820)
Q Consensus 460 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 504 (820)
..+-...+.+ . ...+-.........|+...|+.++++..+..
T Consensus 1691 nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8887776664 2 3445566777888999999999999988643
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=23 Score=36.02 Aligned_cols=233 Identities=12% Similarity=0.068 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHchhCCCCCCHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM----DLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
|.......+..+...|.. .+...+..+.+ ..|...-...+.++++.|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444455555555432 22222233333 23555555556666666652 3556666555322 23545554
Q ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 374 TMIDGYAKAGR-----LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 374 ~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
..+.++...+. ...+...+..+.. .++..+-...+.++.+.++ ++++..+-.+.+ .+|..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 55555544432 1223333333332 2355555566666666665 456666666654 3444555555555
Q ss_pred HHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 449 YGKQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 449 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
+.+.+ +...+...+..+.. .+|..+-...+.++.+.|+ ..|+..+-...+.+ + .....+.++...|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 65543 23456666666654 3466667777777777777 45666665555542 2 234567777777774 6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 555 (820)
|+..+.++.+. .||..+-...+.+|.
T Consensus 253 a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888887763 346666555555553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.18 E-value=3.4 Score=41.41 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33444444444444444444444333 334444444444444444444444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.72 E-value=16 Score=33.52 Aligned_cols=101 Identities=19% Similarity=0.254 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 249 SVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 249 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
++++.+.+.++.|+...|..+++.+.+.| .+. .+..+++.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~-~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG-QFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34444555566666667777777777666 543 33344445555555554443322222 222233333333322
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 329 GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 329 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0013444556666667777776666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.33 E-value=45 Score=38.07 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
++..+|..+.-.|++++|-...-.|.
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 34444444444455555544444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.81 E-value=51 Score=38.05 Aligned_cols=406 Identities=14% Similarity=0.104 Sum_probs=205.1
Q ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHcccccCCh---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHH
Q 003433 159 YTFLLRELG-NRGEWSKAIQCFAFAVKREERKNDQ---GKLASAMISILGRLGKVDLAKNIFETALNEGY----GNTVYA 230 (820)
Q Consensus 159 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~ 230 (820)
...++..|. ...++++|...+++++.......-. ......++..+.+.+... |....++.++.-- ..-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 444677666 5779999999999887654221111 122345677777777766 9999888765311 112233
Q ss_pred HHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCC---------
Q 003433 231 FSAL-ISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVIDACG--KGGVDFKHVVEIFDDMLRNGV--------- 295 (820)
Q Consensus 231 ~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~g~~~~~A~~~~~~m~~~g~--------- 295 (820)
|.-+ +..+...+++..|++.++.+...- ..|-...+-.++.+.. +.+ ..+++.+..+++.....
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~-~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG-SPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHhhcccCCCCC
Confidence 3333 333434489999999999886532 3344555555555543 334 46777777777743221
Q ss_pred CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHC---C-CC--------------------------CCHHH-------
Q 003433 296 QPDRITFNSLLAVC--SRGGLWEAARNLFNEMVHR---G-ID--------------------------QDIFT------- 336 (820)
Q Consensus 296 ~p~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~---g-~~--------------------------~~~~~------- 336 (820)
.|-..+|..+++.+ ...|+++.+...+.++.+. . -. +..+.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 23456677777655 4577877777665554321 0 00 01111
Q ss_pred --HHHHHHH--HHhcCCHHHHHHHH-------HHch-hCCCCCC--------HHHHHHHHHH---------HHHcCCHHH
Q 003433 337 --YNTLLDA--ICKGAQMDLAFEIM-------AEMP-AKNISPN--------VVTYSTMIDG---------YAKAGRLDD 387 (820)
Q Consensus 337 --~~~ll~~--~~~~g~~~~A~~~~-------~~m~-~~g~~p~--------~~~~~~li~~---------~~~~g~~~~ 387 (820)
..-++.+ ++..+..++|.+.+ ++.. .....+. ...|...+.. .+-.+++..
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~ 379 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK 379 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence 1111222 23344444554444 4444 1111111 1223222222 345788999
Q ss_pred HHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHH--HHHH
Q 003433 388 ALNMFSEMKFLGI-GLD-------RVSYNTVLSIYAKLGRFEEALLVCK--------EMESSGIRKDAVTYNAL--LGGY 449 (820)
Q Consensus 388 A~~~~~~m~~~~~-~~d-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l--i~~~ 449 (820)
|...+++|..... .|+ ..++....-.+-..|+.+.|+..|. .....+...+..++..| +..+
T Consensus 380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~ 459 (608)
T PF10345_consen 380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIIL 459 (608)
T ss_pred HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHh
Confidence 9999998876421 111 2222223334456799999999997 44444544444444332 2222
Q ss_pred Hhc--CCHHH--HHHHHHHHHHC---CCCCCHHHHHHH-HHHHHhcC--CHHHHHHHHHHHHHC---CCCCC---HHHHH
Q 003433 450 GKQ--GKYDE--VRRMFEQMKAD---CVSPNLLTYSTL-IDVYSKGG--LYKEAMQIFREFKQA---GLKAD---VVLYS 513 (820)
Q Consensus 450 ~~~--g~~~~--A~~~~~~m~~~---~~~p~~~~~~~l-i~~~~~~g--~~~~A~~~~~~m~~~---~~~p~---~~~~~ 513 (820)
... ...++ +.++++.+... ....+..++..+ +.++.... ...++...+.+..+. ....+ ..+++
T Consensus 460 ~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~ 539 (608)
T PF10345_consen 460 QYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLN 539 (608)
T ss_pred HhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 222 22333 67777766442 112233344444 44443221 122444433332211 01111 22333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC--HHHHHHHHH-----HHhhcCchhhhHHhH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKE-GIRPN--VVTYNSIID-----AFGRSATTECTVDDV 567 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--~~~~~~ll~-----~~~~~g~~~~a~~~~ 567 (820)
.|...+. .|+..+..+........ .-.|| ...|..+.+ .+...|+.++|....
T Consensus 540 lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 540 LMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3333333 68877766655544321 11233 335644333 466778888876643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.78 E-value=4.5 Score=37.64 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWV 695 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 695 (820)
.|++.+|..-|.+.+. +-|. .+.|..-+.+..+.+.++.|+.-..++++++|.....+..-...| +...++
T Consensus 108 ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred cccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 4578888888888876 3332 344666677888999999999999999999986655544433344 356899
Q ss_pred HHHHHHHHHhhcCCCc
Q 003433 696 QALSLFDEVKLMDSST 711 (820)
Q Consensus 696 ~A~~~~~~~~~~~~~~ 711 (820)
+|+.-|+++++.+|..
T Consensus 186 ealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 186 EALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHhCcch
Confidence 9999999999999954
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.95 Score=28.67 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
.|..+|.+|...|++++|...++++.+..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 47788888888888888888888776543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.57 Score=29.91 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=10.5
Q ss_pred ChhHHHHHHHHHHHhcCChHHH
Q 003433 191 DQGKLASAMISILGRLGKVDLA 212 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A 212 (820)
.+..+|..++.+|...|++++|
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhh
Confidence 3334444455555555555444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.87 Score=30.41 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 714 AFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 714 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
..++.|+.+|...|++++|..+++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45899999999999999999999887543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.14 E-value=6.7 Score=36.75 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD--RVSYNTVLSIYAKLGRFEEALLVCKE 429 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d--~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (820)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|....-.+++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34444444455555555555544444322221 12233444444444444444444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.08 E-value=4.8 Score=36.41 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=56.3
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH-hccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchH-
Q 003433 653 NACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL-MGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKR- 730 (820)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 730 (820)
+.-.+.++.+++..+++.+....|....+...-. .....|+|.+|+.+++.+.+..|.. +..-..++.+|...|+.+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHHHHcCChHH
Confidence 3345678999999999999888887655422211 2236789999999999987777643 444566777777777643
Q ss_pred --HHHHHH
Q 003433 731 --GAQLVV 736 (820)
Q Consensus 731 --~A~~~~ 736 (820)
.|.+++
T Consensus 97 r~~A~evl 104 (160)
T PF09613_consen 97 RRYADEVL 104 (160)
T ss_pred HHHHHHHH
Confidence 444443
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.95 E-value=8.2 Score=38.68 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.4
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003433 168 NRGEWSKAIQCFAFAVK 184 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~ 184 (820)
..|++..|++.+-.+++
T Consensus 385 SaGDy~~AiETllTAI~ 401 (498)
T KOG4849|consen 385 SAGDYKGAIETLLTAIQ 401 (498)
T ss_pred ccccchhHHHHHHHHHH
Confidence 35677777766655543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.95 E-value=5.7 Score=39.73 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC
Q 003433 223 GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN---LKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP 297 (820)
Q Consensus 223 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p 297 (820)
|.+..+.+-..++..-....++++++.++-+++... ..| ..++| +..+.+- +.++++.++..=++.|+-|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllky--~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLKY--DPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHcc--ChHHHHHHHhCcchhcccc
Confidence 344455555666666666778888888887776431 122 23333 3333333 5788888888888899999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
|..+++.+|+.+.+.+++.+|.++.-.|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998888887777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.89 E-value=9.9 Score=41.61 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=95.4
Q ss_pred hcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 346 KGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 346 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~ 425 (820)
-.|+++.|..++..+.+ ...+.++..+.+.|..++|+++- +|..-. .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHH
Confidence 34666666665555442 23455666677777777776542 222211 123346788888877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003433 426 VCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL 505 (820)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 505 (820)
+..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.|...|+-+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66554 3567788888888888888888888887653 34566677777777766666666666553
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 506 KADVVLYSALIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 506 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 535 (820)
. |. -.-+|...|+++++.+++.+-
T Consensus 724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 2 22 233566778888887776554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.1 Score=28.39 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
+|..++.+|...|++++|.+.++++.+..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 58899999999999999999999887653
|
... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.47 E-value=5.5 Score=37.29 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=36.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.+..+...|.+.|+.++|++.|.++.............+-.+++.....|++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566666666666666666666655432222223344556666666666666666655553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.37 E-value=17 Score=32.37 Aligned_cols=92 Identities=11% Similarity=-0.069 Sum_probs=50.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 205 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
..++++++..+++.+.-..+. ....-..-+..+...|++++|+.+|+++.+.+. ....-..|+..|.... .-..-.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al-~Dp~Wr 97 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAK-GDAEWH 97 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhc-CChHHH
Confidence 467888888888877654322 233333344556778888888888888876542 2222233444443332 223334
Q ss_pred HHHHHHHHCCCCCCHH
Q 003433 285 EIFDDMLRNGVQPDRI 300 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~ 300 (820)
..-++++..|-.++..
T Consensus 98 ~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 98 VHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHHHhCCCHhHH
Confidence 4444555554444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.28 E-value=0.83 Score=28.91 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=24.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDN 676 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~ 676 (820)
+|..++..|...|++++|.+.|++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567788888889999999999988887665
|
... |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.04 E-value=17 Score=38.78 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHH---HCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC----
Q 003433 448 GYGKQGKYDEVRRMFEQMK---ADC--VSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQ-------AGLKAD---- 508 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~---~~~--~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~---- 508 (820)
.+.-.|++.+|.+++...- +.| +.|. -..||.|...+.+.|.+..+..+|.+.++ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445677777777665431 111 1111 22346666666666776666666666553 344332
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 509 -------VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFG 555 (820)
Q Consensus 509 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 555 (820)
..+|| ..-.|...|+.-.|.+.|.+.... +.-++..|..|..+|.
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 23444 445678899999999999998875 5668889999999884
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.76 E-value=64 Score=36.90 Aligned_cols=171 Identities=12% Similarity=0.135 Sum_probs=102.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
++-+.+.+.+++|+.+-+......... ....+....+..|...|++++|-.+.-.|... +..-|.--+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~-~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERF-VIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCcccc-chHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 555667889999998776554432211 13456778899999999999999998888653 7788888888888887
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLF 322 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 322 (820)
+..+...+ +......-+...|..+|..+.. . +. .-|.+.++. .. ...|..+--.-+- -
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~-~~----~~F~e~i~~-Wp--~~Lys~l~iisa~----------~ 495 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S-DV----KGFLELIKE-WP--GHLYSVLTIISAT----------E 495 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH-H-HH----HHHHHHHHh-CC--hhhhhhhHHHhhc----------c
Confidence 76554333 3332222355678888877765 2 22 223333332 12 2233322111111 1
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 323 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
.+..+.. + +...-..|+..|...+++..|++++-...+
T Consensus 496 ~q~~q~S-e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 496 PQIKQNS-E-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHhhc-c-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 1111110 1 122233388889999999999998887764
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.5 Score=44.11 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=59.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
-++-|.++|+++||+..|......+|.+.....+-.++| +...+..|+.--+.++.+|-.. .-.|.--+..-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y-~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY-VKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH-HHHHHHHHHHHHHHhhH
Confidence 456789999999999999998888775543333333444 5556666666666666554422 22355555555666777
Q ss_pred HHHHHHHHHhhhhhh
Q 003433 730 RGAQLVVLEGKRRQV 744 (820)
Q Consensus 730 ~~A~~~~~~~~~~~~ 744 (820)
.||.+-.+.+++...
T Consensus 182 ~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 182 MEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHhHHHHHhhCc
Confidence 777776655554433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.23 E-value=86 Score=37.84 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=82.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV----TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 483 (820)
.-.++.--+.|.+.+|+.++ .++.. .|.+..+.+...+.+++|--+|+..-+. .--+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHH
Confidence 33444444566666666555 34444 4444555556677788887777764221 124567
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchh
Q 003433 484 YSKGGLYKEAMQIFREFKQAGLKADVV--LYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTE 561 (820)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 561 (820)
|..+|++.+|+.+..++... -|.. +-..|+.-+...++.-+|-++..+.... . ...+..+++...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-----~---~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-----P---EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----H---HHHHHHHhhHhHHH
Confidence 77888888888888777532 1322 2366788888999999998888877652 1 12234455556677
Q ss_pred hhHHhHH
Q 003433 562 CTVDDVE 568 (820)
Q Consensus 562 ~a~~~~~ 568 (820)
+|+.+..
T Consensus 1044 eAlrva~ 1050 (1265)
T KOG1920|consen 1044 EALRVAS 1050 (1265)
T ss_pred HHHHHHH
Confidence 7766543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.13 E-value=39 Score=33.78 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 479 TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 479 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.....|..+|.+.+|.++.++.+..+. .+...|-.|+..+...|+--.|.+.++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556666777777777666665542 355666666677777776666666666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.12 E-value=11 Score=37.90 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=62.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC---VSPN--LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
|.+....+...++..-....+++.++.++-+++..- ..++ ..+|-.++ ..-+.++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334444555555555556667777777766665431 1111 22222222 22356677777777777788888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..+++.+++.+.+.+++.+|..+...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777766654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.97 E-value=15 Score=40.36 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=44.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+.|+++.|.++..+.. +..-|..|.++....+ ++..|.+.|..... |..|+-.+...|+-+...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG-ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc-cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 4455555555444332 3444555555555555 55555555544332 233444444444444444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 003433 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 360 (820)
.+-....+.|. .|. -.-+|...|+++++.+++.+-
T Consensus 713 ~la~~~~~~g~-~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 713 VLASLAKKQGK-NNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHhhcc-cch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 44444444331 111 112334455555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.51 E-value=59 Score=35.26 Aligned_cols=179 Identities=16% Similarity=0.179 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 341 (820)
|.....+++..+.++. ...-+..+..+|+..| -+...|..++.+|... .-++-..+++++.+..+. |++.-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~-k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNH-KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccch-HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 5566677888888877 6777788888888764 3677788888888877 567778888888886543 444445555
Q ss_pred HHHHhcCCHHHHHHHHHHchhCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 003433 342 DAICKGAQMDLAFEIMAEMPAKNIS-----PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFL-GIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 342 ~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~d~~~~~~li~~~~ 415 (820)
..|-+ ++.+.+...|.+...+-+. --...|..|+..- ..+.+..+.+..++... |...-.+.+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 8888888888877654221 1122455544321 34556666666665442 43444556666667777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
...++++|++++..+.+.+ ..|...-..++.-+
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 7888888888888777665 45555555555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.41 E-value=34 Score=34.18 Aligned_cols=55 Identities=13% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREF 500 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 500 (820)
....|..+|.+.+|.++.++.+..+ +.+...+-.|+..+...|+--.|.+-++.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444555555555555555554432 334444455555555555544444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=46 Score=33.88 Aligned_cols=15 Identities=7% Similarity=-0.110 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhcC
Q 003433 228 VYAFSALISAYGRSG 242 (820)
Q Consensus 228 ~~~~~~li~~~~~~g 242 (820)
...-...+.++...|
T Consensus 68 ~~vR~~A~~aLg~lg 82 (280)
T PRK09687 68 PIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHHHHHhcC
Confidence 333333444444444
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.3 Score=29.46 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRL 673 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~ 673 (820)
.+++.|+.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 5688999999999999999999998874
|
|
| >KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.96 E-value=7.4 Score=39.20 Aligned_cols=49 Identities=14% Similarity=0.174 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
....+..++.+|+.-.-.++|+..+++..+.|+- +...|-.=++.+.+.
T Consensus 298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G~i-~l~~yLr~VR~lsRe 346 (365)
T KOG2391|consen 298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDGVI-DLDQYLRHVRLLSRE 346 (365)
T ss_pred cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcCee-eHHHHHHHHHHHHHH
Confidence 4455666777777666667777777776666654 555554444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.73 E-value=0.035 Score=50.29 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=23.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003433 199 MISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFN 252 (820)
Q Consensus 199 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 252 (820)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444444444444444444443333334444444444444444444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.52 E-value=92 Score=35.91 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHCCC
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGV------DFKHVVEIFDDMLRNGV 295 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~~A~~~~~~m~~~g~ 295 (820)
.+| .+|-.+.|+|++++|.++..+.... .......+...+..+..... .-++...-|.+..+...
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345 4566677888888888888554432 23344555666666655420 12355556666665433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.52 E-value=1.7 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.117 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHH
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVL 737 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~ 737 (820)
....|++++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 36779999999999999998865
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=83.48 E-value=37 Score=31.27 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 003433 285 EIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEA 317 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 317 (820)
++++.+.+.++.++...+..++..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334444455566666666666666666665443
|
|
| >KOG0917 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.24 E-value=9.8 Score=36.87 Aligned_cols=17 Identities=59% Similarity=0.976 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003433 63 PKPAATSTTVAPNPKPF 79 (820)
Q Consensus 63 ~~p~~~~~~~~~~~~~~ 79 (820)
|.|..+++...+.+.++
T Consensus 251 P~p~ySst~~ap~ps~f 267 (338)
T KOG0917|consen 251 PAPVYSSTGVAPNPSTF 267 (338)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34444444444444433
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.24 E-value=58 Score=33.37 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=86.6
Q ss_pred HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 003433 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILG----RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGR-- 240 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 240 (820)
...+++..|...+..+...+.. .....++..|. ...+..+|..+|..+...| .......|..+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~~-----~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~ 123 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGDA-----AALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGR 123 (292)
T ss_pred cccccHHHHHHHHHHhhhcCCh-----HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCC
Confidence 3456777777777776653211 12333344333 3345778888888777654 34455556666665
Q ss_pred --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----CCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 003433 241 --SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG----GVDF--KHVVEIFDDMLRNGVQPDRITFNSLLAVCSR- 311 (820)
Q Consensus 241 --~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----g~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 311 (820)
..+..+|..+|++..+.|..+...+...+...+... +... ..|...|.++...+ +......|...|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcC
Confidence 347788888888888776443222233333333332 1122 36777777777665 34444444444433
Q ss_pred ---CCCHHHHHHHHHHHHHCC
Q 003433 312 ---GGLWEAARNLFNEMVHRG 329 (820)
Q Consensus 312 ---~g~~~~A~~~~~~~~~~g 329 (820)
..+.++|...|...-+.|
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 236777777777777765
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.08 E-value=10 Score=33.74 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=47.7
Q ss_pred ccCCHHHHHHHHHHHhhcCCchhHHHHH-HHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCch
Q 003433 657 RCNSFEDASMLLEELRLFDNQVYGVAHG-LLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQK 729 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 729 (820)
..++.+++..+++.|....|+...+-.- -......|+|.+|..+++++.+..+.. +..-..++.++.-.|+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHhcCCh
Confidence 4788899999999888777765543211 111235788888888888888776633 33345666677666653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.43 E-value=44 Score=31.40 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 003433 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNL--LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNG 523 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 523 (820)
...+...|++++|..-++..+.....-+. .+--.|.......|.+++|+..++...+.+. .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 45567777777777777766643111111 1122345566677788888887777665432 2233344466777888
Q ss_pred CHHHHHHHHHHHHHCC
Q 003433 524 LVESAVSLLDEMTKEG 539 (820)
Q Consensus 524 ~~~~A~~~~~~m~~~g 539 (820)
+-++|..-|++.+..+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888877754
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.56 E-value=42 Score=31.81 Aligned_cols=73 Identities=10% Similarity=-0.046 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 281 KHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR---GIDQDIFTYNTLLDAICKGAQMDLAF 354 (820)
Q Consensus 281 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---g~~~~~~~~~~ll~~~~~~g~~~~A~ 354 (820)
+.|.+.|-++...+.--+......|...|. ..+.+++++++.++++. +-.+|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 566666666665554434444444444333 55666666666666553 22455666666666666666666553
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.78 E-value=1.2e+02 Score=35.45 Aligned_cols=89 Identities=12% Similarity=0.131 Sum_probs=45.8
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNL-------VTYNAVIDACG-KGGVDFKHVVEIFDDMLRN----GVQPDRITFNSLL 306 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~-~~g~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll 306 (820)
....++++|..++.++...-..|+. ..|+.+-.... ..| +++.|.++.+..... -..+....+.++.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~-~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRG-DPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456677777766665432111111 13343333322 233 666666666665542 1222344455555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 003433 307 AVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
.+..-.|++++|..+..+..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH
Confidence 6666667777777666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 820 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 6e-06 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 5e-23
Identities = 28/216 (12%), Positives = 63/216 (29%), Gaps = 4/216 (1%)
Query: 286 IFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAIC 345
+ D + P LL + + + +
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 346 KGAQMDLAFEI---MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402
Q+ LA + K + Y+ ++ G+A+ G + + + +K G+
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 403 DRVSYNTVLSIYAKLGRFEEALLVC-KEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461
D +SY L + + + C ++M G++ A+ LL + V ++
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 462 FEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
P + S L+ ++
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 34/279 (12%), Positives = 82/279 (29%), Gaps = 12/279 (4%)
Query: 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410
+A + SP + ++ LD + + +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 411 LSIYAKLGRFEEA---LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467
+ A L+V YNA++ G+ +QG + E+ + +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQ-IFREFKQAGLKADVVLYSALIDALCKNGLVE 526
++P+LL+Y+ + + ++ + Q GLK + + L+ + +++
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 527 SAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQ 586
+ + + P V + ++ + D K +
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLR--------DVYAKDGRVSYPKLHLPLKTLQCLFE 305
Query: 587 DDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQE 625
++ A R ++ E K R +
Sbjct: 306 KQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQ 344
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 2e-18
Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 3/166 (1%)
Query: 184 KREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN---TVYAFSALISAYGR 240
+ + + Q + A ++ LA ++ + T+ ++A++ + R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 241 SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRI 300
G +E + V +K L P+L++Y A + G+ D + + M + G++ +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237
Query: 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK 346
LL+ R + +A + + LL +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 5e-17
Identities = 20/211 (9%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 205 RLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV 264
RL +A + + + L+ + + L
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 265 TYNAVIDACGKGGVDFK---HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321
A C H++ + + +N+++ +R G ++ +
Sbjct: 129 RLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187
Query: 322 FNEMVHRGIDQDIFTYNTLLDAICK-GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYA 380
+ G+ D+ +Y L + + + +M + + + + ++
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
Query: 381 KAGRLDDALNMFSEMKFLGIGLDRVSYNTVL 411
+A L + V+ + +L
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 1e-11
Identities = 75/584 (12%), Positives = 167/584 (28%), Gaps = 169/584 (28%)
Query: 279 DFKHVVEI---------FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRG 329
D K V ++ D ++ D ++ L L + + V
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIM---SKDAVSGTLRLFWT----LLSKQEEMVQKFVEEV 86
Query: 330 IDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNISPNVVTYS-TMIDGYAKAGRL 385
+ + Y L+ I + M I N + Y+ + + Y K L
Sbjct: 87 LRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK---L 140
Query: 386 DDALNMFSEMKFL------GIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439
AL K + G G T + AL VC +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG------KTWV-----------ALDVCLSYKVQCKMDFK 183
Query: 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQ-- 495
+ + L + + E ++ + PN +++ D S L ++Q
Sbjct: 184 IFWLNL-------KNCNSPETVLEMLQKLLYQIDPN---WTSRSDHSSNIKLRIHSIQAE 233
Query: 496 ---IF--REFKQAGLKADVVLYSALIDAL---CKNGLVESAVSLLDEMTKEGIRPNVVT- 546
+ + ++ L V + +A CK +L + T
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK---------IL-----------LTTR 273
Query: 547 YNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMC-SQDDKDV-QEAGRTDNQIIKV 604
+ + D + TT ++D L E +L +D+ +E T+ + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDA 664
+ + ++ + ++ ++ K + I+ +
Sbjct: 333 IAESI--------RDGLATWD------NWKHVNCDK-------LTTIIESS--------- 362
Query: 665 SMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDE-VKLMDSSTASAFYNALTDML 723
L L + + + LS+F + L+ ++
Sbjct: 363 ---LNVLEPAEYRKM---------FDR------LSVFPPSAHIP--------TILLS-LI 395
Query: 724 WHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLH-----LMSSGAARAMVHAWLLNIHSI 778
W K +VV + + + E ES + + L +H +++ ++I
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 779 V--FEGHELPKL---------LRYMIICLSVADECLLLLKFHLN 811
F+ +L + + + + + L L+
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 3e-09
Identities = 60/406 (14%), Positives = 114/406 (28%), Gaps = 37/406 (9%)
Query: 219 ALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKR---YNLKPNLVTYN---AVIDA 272
A A A GY Q+ R LV + A I A
Sbjct: 34 APRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVA 93
Query: 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ 332
+ V + ++ P+ + + G L + RG
Sbjct: 94 LSQHPAALGTVAVTYQHIIT--ALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPL 151
Query: 333 DIFTYNTLLDAICKGAQMDLA---FEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDA 388
+ T + A G A N++P VV ++ G +
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211
Query: 389 LNMFSEMKFLGIGLDR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNA 444
L + + GL V+ + L + L V + + G+ V +
Sbjct: 212 LPVLCQ----AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVVAIAS 265
Query: 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQA 503
+GG + + Q ++P+ + ++ + + + +
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASHGGGKQALETVQRLLPVLC--QAH 321
Query: 504 GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSATTE 561
GL D VV ++ V+ + +L + G+ P+ VV S T +
Sbjct: 322 GLTPDQVVAIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQ 379
Query: 562 CTVDDVERDLGKQKESANLDAMCS----QDDKDVQEAGRTDNQIIK 603
+ + + G + A+ S Q + VQ Q
Sbjct: 380 RLLPVLCQAHGLT--PDQVVAIASNGGKQALETVQRLLPVLCQAHG 423
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 44/390 (11%), Positives = 109/390 (27%), Gaps = 43/390 (11%)
Query: 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFE 217
D + G + + + DQ ++ L V +
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 218 TA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK 275
L V A ++ Q+ + V + + +T + V+
Sbjct: 454 QTHGLTPAQ---VVAIASHDGGKQALETVQQLLPVLC-------QAHGLTPDQVVAIASN 503
Query: 276 GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG------GLWEAARNLFNEMVHRG 329
G K + +L Q +T + ++A+ S G + + + G
Sbjct: 504 IGG--KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH--G 559
Query: 330 ID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDD 387
+ + + + ++ + A ++ VV ++ I G +
Sbjct: 560 LTPDQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTQVQVVAIASNIGGKQALETVQR 617
Query: 388 ALNMFSEMKFLGIGLDRV-SYNTVLSIYAKLGRFEEALLV-CKEMESSGIRKDAVTYNAL 445
L + + G+ +V + + L + L V C+ + V +
Sbjct: 618 LLPVLC--QAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PDQVVAIASN 673
Query: 446 LGGYGKQGKYDEVRRMFEQMKADCVSPN-LLTYSTLIDVYSKGGLYKEAMQIFREFKQAG 504
GG + + Q A ++ ++ ++ + + + +
Sbjct: 674 GGGKQALETVQRLLPVLCQ--AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ----- 726
Query: 505 LKADVVLYSALIDALCKNGLVESAVSLLDE 534
L + A+ NG + A+ +
Sbjct: 727 ---AHGLTPDQVVAIASNGGGKQALETVQR 753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 7e-07
Identities = 44/295 (14%), Positives = 84/295 (28%), Gaps = 21/295 (7%)
Query: 206 LGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVT 265
+G N + V L AY + P L
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSA----PELQA 67
Query: 266 YNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC-SRGGLWEAARNLFNE 324
+ +V D + V TF + A +AA ++
Sbjct: 68 VRMFAEYLASHS-RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPNVVTYSTMIDGYAKAG 383
+ + + K ++DLA + + +M ++ + + + A
Sbjct: 127 G------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180
Query: 384 RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYN 443
+L DA +F EM + N + + GR+E A V +E T
Sbjct: 181 KLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLI 238
Query: 444 ALLGGYGKQGKYDE-VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIF 497
L+ GK E R Q+K + + + + +K + + +
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKD--AHRS---HPFIKEYRAKENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 8e-07
Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 9/186 (4%)
Query: 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-S 412
+ ++ + + +P + + A R D + + + ++ + S
Sbjct: 50 YGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAAS 109
Query: 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM-KADCVS 471
IY + AL + +S + A+T LL K + D R+ ++M D +
Sbjct: 110 IYFYDQNPDAALRTLHQGDS--LECMAMTVQILL----KLDRLDLARKELKKMQDQDEDA 163
Query: 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531
+ + + + G ++A IF+E ++L + G E+A +
Sbjct: 164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGV 222
Query: 532 LDEMTK 537
L E
Sbjct: 223 LQEALD 228
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 379 YAKAGRLDDALNMFS---EMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431
Y + +A ++ + ++ +G D + N + +Y K G+++EA +CK
Sbjct: 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR-- 110
Query: 432 SSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS------PNLL- 475
+ IR+ A N L QGK +EV + + + PN+
Sbjct: 111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170
Query: 476 TYSTLIDVYSKGGLYKEAMQIFRE 499
T + L Y K G Y++A +++E
Sbjct: 171 TKNNLASCYLKQGKYQDAETLYKE 194
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 34/148 (22%)
Query: 379 YAKAGRLDDALNMFSE-----MKFLGIGLDR-----VSYNTVLSIYAKLGRFEEALLVCK 428
Y K G+ +A + K LG N + + G+ EE +
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKVLG---KFHPDVAKQLNNLALLCQNQGKAEEVEYYYR 151
Query: 429 E-MESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ----MKADCVSPN- 473
+E I A T N L Y KQGKY + ++++
Sbjct: 152 RALE---IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208
Query: 474 ---LLTYSTLIDVYSKGGLYKEAMQIFR 498
+ + +++
Sbjct: 209 GDNKPIWMHAEEREESKDKRRDSAPYGE 236
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 45/381 (11%), Positives = 99/381 (25%), Gaps = 37/381 (9%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
+ + A Q ++ L V + A
Sbjct: 82 KQALETVQRLLPVLCQAH---GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH-GLTP 137
Query: 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVE 285
V A ++ Q + V + + L P V A + + ++
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 286 IFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDA 343
+ + P ++ S + + + G+ Q + +
Sbjct: 196 VLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAIASN--G 249
Query: 344 ICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL 402
K A + + A ++P VV ++ G + L + + GL
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ----AHGL 305
Query: 403 DR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KDAVTYNALLGGYGKQGKYD 456
V+ + L + L V + + V + GG
Sbjct: 306 TPQQVVAIASNGGGKQALETVQRLLPVLCQA----HGLTPQQVVAIASHDGGKQALETVQ 361
Query: 457 EVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFREFKQA-GLK-ADVVLYS 513
+ + Q A ++P + ++ + + QA GL VV +
Sbjct: 362 RLLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLP---VLCQAHGLTPEQVVAIA 416
Query: 514 ALIDALCKNGLVESAVSLLDE 534
+ V+ + +L +
Sbjct: 417 SHDGGKQALETVQRLLPVLCQ 437
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 17/180 (9%)
Query: 362 AKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR---VSYNTVLSIYAKL 417
N++P VV ++ G + L + + GL V+ + L
Sbjct: 64 PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQ----AHGLTPQQVVAIASHDGGKQAL 119
Query: 418 GRFEEALLV-CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLL- 475
+ L V C+ + + V + GG + + Q A ++P +
Sbjct: 120 ETVQRLLPVLCQAHGLT--PEQVVAIASHDGGKQALETVQALLPVLCQ--AHGLTPEQVV 175
Query: 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDE 534
++ + + + + GL VV ++ V+ + +L +
Sbjct: 176 AIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 37/314 (11%), Positives = 78/314 (24%), Gaps = 41/314 (13%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA--LNEG 223
+ + A Q ++ L V + A L
Sbjct: 184 KQALETVQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 224 YGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGV---- 278
V A ++ Q + V + + L P V G
Sbjct: 241 Q---VVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIA------SNSGGKQAL 289
Query: 279 -DFKHVVEIFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIF 335
+ ++ + G+ P ++ S + + + G+ Q +
Sbjct: 290 ETVQRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVV 345
Query: 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSE 394
+ K A + + A ++P VV ++ G + L + +
Sbjct: 346 AIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 395 MKFLGIGL---DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYG 450
GL V+ + L + L V + + G+ + V + GG
Sbjct: 404 ----AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGRP 457
Query: 451 KQGKYDEVRRMFEQ 464
+
Sbjct: 458 ALESIVAQLSRPDP 471
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 45/363 (12%), Positives = 101/363 (27%), Gaps = 35/363 (9%)
Query: 157 DDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASA---MISILGRLGKV 209
Y L+ GN +++AI+ + +A++ + + G +
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL------DPNEPVFYSNISACYISTGDL 75
Query: 210 DLAKNIFETA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYN 267
+ A + + A SA G +A+ + +
Sbjct: 76 EKVIEFTTKALEIKPDH---SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEP 132
Query: 268 AVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR---------GGLWEAA 318
+ K + + D+ + V P + S + ++ A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192
Query: 319 RNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMID 377
L ++ + + + + + + + A + N +
Sbjct: 193 YALLSD-ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGI 251
Query: 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK 437
+ L DA + + + + SY + A +E ++ +
Sbjct: 252 FHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308
Query: 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQI 496
TY Y Y + F+ KA ++P Y L + K G + E+
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQ--KAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366
Query: 497 FRE 499
F E
Sbjct: 367 FNE 369
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 21/176 (11%), Positives = 49/176 (27%), Gaps = 20/176 (11%)
Query: 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE----MESSGIRKD-AVTY 442
AL+++ I + S + Y +++AL + + A++
Sbjct: 167 ALDIYQNHPLYSIRTIQ-SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISL 225
Query: 443 NALLGGYGKQGKYDEVRRMFEQ---MKADCVSPNLL-TYSTLIDVYSKGG-------LYK 491
+ Y + G F++ + + V L L K G +
Sbjct: 226 LNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIE 285
Query: 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547
E + K + A+ + +S + K+ + +
Sbjct: 286 EGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE---KKNLHAYIEAC 338
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 13/158 (8%)
Query: 388 ALNMFSEMKF-LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE----MESSGIRKDAVTY 442
AL + +++ I + S + + Y + G + A+ ++
Sbjct: 208 ALELAMDIQNDRFIAI---SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264
Query: 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQIFR 498
L K G+ + + E+ + + + L VY + ++ +
Sbjct: 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324
Query: 499 EFKQAGLKADVV-LYSALIDALCKNGLVESAVSLLDEM 535
F++ L A + + + E A + ++
Sbjct: 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 31/147 (21%)
Query: 379 YAKAGRLDDALNMFSE-----MKFLG-----IGLDRVSYNTVLSIYAKLGRFEEALLVCK 428
Y + DA N+ ++ K LG + + N + +Y K G+++EA +CK
Sbjct: 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVA---ATLNNLAVLYGKRGKYKEAEPLCK 135
Query: 429 EMESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ---MKADCVSPN--- 473
+ IR+ A N L QGKY+EV +++ + + P+
Sbjct: 136 R--ALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN 193
Query: 474 -LLTYSTLIDVYSKGGLYKEAMQIFRE 499
T + L Y K G +K+A +++E
Sbjct: 194 VAKTKNNLASCYLKQGKFKQAETLYKE 220
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 25/144 (17%)
Query: 379 YAKAGRLDDALNMFS---EMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEME 431
YA GR + A+ + E G D N + +Y ++++A + +
Sbjct: 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND-- 94
Query: 432 SSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ---MKADCVSPN----LL 475
+ IR+ A T N L YGK+GKY E + ++ ++ + +
Sbjct: 95 ALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154
Query: 476 TYSTLIDVYSKGGLYKEAMQIFRE 499
+ L + G Y+E ++
Sbjct: 155 QLNNLALLCQNQGKYEEVEYYYQR 178
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 4e-05
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD---------AVTYNALLGGYGKQGKYD 456
+ + ++ YA GR+E A+ +CK ++ + A N L Y Q KY
Sbjct: 29 TLHNLVIQYASQGRYEVAVPLCK--QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYK 86
Query: 457 EVRRMFEQ---MKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQIFRE 499
+ + ++ + + T + L +Y K G YKEA + +
Sbjct: 87 DAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKR 136
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 15/105 (14%), Positives = 28/105 (26%), Gaps = 25/105 (23%)
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRV----------SYNTVLSIYAKLGRFEEALLVCK 428
Y K G+ A ++ + L +R + G+ ++
Sbjct: 205 YLKQGKFKQAETLY--KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT---- 258
Query: 429 EMESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ 464
G T L Y +QGK++ + E
Sbjct: 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 30/145 (20%)
Query: 379 YAKAGRLDDALNMFSEMKFLGI-----GLDR----VSYNTVLSIYAKLGRFEEALLVCKE 429
Y K G+ +A + + L I G D N + + G++EE +
Sbjct: 121 YGKRGKYKEAEPLC--KRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178
Query: 430 MESSGIRKD---------AVTYNALLGGYGKQGKYDEVRRMFEQ----MKADCVSPN--- 473
+ I + A T N L Y KQGK+ + ++++
Sbjct: 179 --ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236
Query: 474 -LLTYSTLIDVYSKGGLYKEAMQIF 497
+ + G K+
Sbjct: 237 NKPIWMHAEEREECKGKQKDGTSFG 261
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 76/594 (12%), Positives = 164/594 (27%), Gaps = 103/594 (17%)
Query: 23 HNHLKNNHHRQSHHPSSRPHWTSHKVSLTKPPLSPSPRNAPKPAATSTTVAPNPKPFHSL 82
+ + R P + H +H + P S NA + +T+ +P +
Sbjct: 3 VKRTQTDS-RMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPM---TY 58
Query: 83 SPLPSSKSELAPDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVA----EEALHH------V 132
+S ++T +S+ + R RH + + A +
Sbjct: 59 LANNTSTDGSFLKERNAQNTDSLSREDYLR-----LWRHDALMQQQYKCAAFVGEKVLDI 113
Query: 133 TAFARDDVSLGDIL---KKFE-----FKLCGADD-----YTFLLRELGNRGEWSKAIQCF 179
T D L + + + L +W A+
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLL 173
Query: 180 AFA---------VKREERKNDQGKLASAMISILG----RLGKVDLAKNIFETALNEGYGN 226
+ ++ KL ++M + G L D AK ++ AL
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL-MVDAK 232
Query: 227 TVYAFSALISAY-GRSGYCQEAISVFNSMKRYNLKPNLVT--YNAVIDACGKGGVDFKHV 283
AF L+S + + + + N + Y ++ + +
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED-ELRRA 291
Query: 284 VEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLD 342
+ + D + + +++ ID ++ Y L
Sbjct: 292 EDYLSSINGLEKSSD--LLLCKADTLFVRSRFIDVLAITTKILE--IDPYNLDVYPLHLA 347
Query: 343 AICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFS---EMK-- 396
++ + + + + I + + P VT+ + Y ++ +A FS M
Sbjct: 348 SLHESGEKNKLYLISND--LVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 397 ----FLGIG-----LDRV-----SYNTVLSI--------------YAKLGRFEEALLVCK 428
++G +Y T + + +LG A +
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465
Query: 429 EMESSGIR-KDAVTYNALLGGYGKQGKYDEVRRMFEQ-----MKADCVSPNL-LTYSTLI 481
S + D + N L + F+ K T++ L
Sbjct: 466 --SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523
Query: 482 DVYSKGGLYKEAMQIFREFKQAGLKAD-VVLYSALIDALCKNGLVESAVSLLDE 534
Y K +Y A+ + L + +++A+ + A++ L E
Sbjct: 524 HAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHE 575
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 21/178 (11%)
Query: 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL-SIYAKLGRFEEALLVCKEMESSGIR- 436
+AG + A M+ D +L SI+ + R + + I+
Sbjct: 9 EYQAGDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL----AIKQ 62
Query: 437 --KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEA 493
A Y+ L Y ++G+ E + A + P+ Y L G + A
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 494 MQIFREFKQA-GLKADVV-LYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYN 548
+Q + A D+ + S L + L G +E A + + + +PN V ++
Sbjct: 121 VQ---AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 67/406 (16%), Positives = 139/406 (34%), Gaps = 69/406 (16%)
Query: 165 ELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMI---SILGRLGKVDLAKNIFETALN 221
G++ A + ++ + ++ SI + ++D + + A+
Sbjct: 8 REYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI- 60
Query: 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDF 280
+ A+S L + Y G QEAI + LKP+ + Y + A G D
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYR--HALRLKPDFIDGYINLAAALVAAG-DM 117
Query: 281 KHVVEIFDDMLRNGVQPDRI-TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIF-TYN 338
+ V+ + L+ PD + L + G E A+ + + + + ++
Sbjct: 118 EGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE--TQPNFAVAWS 173
Query: 339 TLLDAICKGAQMDLAFEIMAEMPAKNISPN-VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397
L ++ LA + A + PN + Y + + +A D A+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEK--AVTLDPNFLDAYINLGNVLKEARIFDRAVA------- 224
Query: 398 LGIGLDRVSYNTVLSI--------------YAKLGRFEEALLVCKEMESSGIR---KDAV 440
+Y LS+ Y + G + A+ + I
Sbjct: 225 --------AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR----AIELQPHFPD 272
Query: 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIFRE 499
Y L ++G E + A + P + + L ++ + G +EA++++R
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYN--TALRLCPTHADSLNNLANIKREQGNIEEAVRLYR- 329
Query: 500 FKQA-GLKAD-VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543
+A + + +S L L + G ++ A+ E + I P
Sbjct: 330 --KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPT 371
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 34/362 (9%), Positives = 96/362 (26%), Gaps = 75/362 (20%)
Query: 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225
G+++ A+ + + + + + K+ +TA
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 226 NTVYAFSA------------LISAYGRSGYCQEAISVFNSMKRYN---LKPNLVTYNAVI 270
+ ++++ + + ++ + + Y
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202
Query: 271 DACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG------GLWEAARNLFNE 324
++ K F +F++ L + +++ +++ G A +
Sbjct: 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262
Query: 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR 384
AI + P V +Y M A
Sbjct: 263 ------------------AI-------------------ELFPRVNSYIYMALIMADRND 285
Query: 385 LDDALNMFSEMKFLGIGLDR---VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438
+ N F + + LD Y + L +++A + ++
Sbjct: 286 STEYYNYFDKA----LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKA----KELDPEN 337
Query: 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL-LTYSTLIDVYSKGGLYKEAMQIF 497
Y L ++ K+D+ +F +A P + ++ + + +A++ +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFS--EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395
Query: 498 RE 499
Sbjct: 396 DL 397
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 50/365 (13%), Positives = 104/365 (28%), Gaps = 72/365 (19%)
Query: 146 LKKFEFKLCGADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQ--GKLASAM 199
+ + + + ELG G+ + A+ F AV + N + A+
Sbjct: 16 ENLYFQSMADVEKH----LELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVF 70
Query: 200 ISILGRLGKVDLAKNIFETA--LNEGYGNTVYAFSALISAYGRSGYCQEAISVF------ 251
++ +GK A L + A + G EA F
Sbjct: 71 LA----MGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123
Query: 252 --NSMKRYNLKPNLVTYNAVIDACGKGGV-----DFKHVVEIFDDMLRNGVQPDRITFNS 304
+ + + L+ + + + D+ + D +L V
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELRE 181
Query: 305 LLAVCSRG-GLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362
L A C G A + + + + + + +L+ + E
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVRE--C 237
Query: 363 KNISPN-------------VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------ 403
+ + + + + GR DA + + + +
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES----VMKTEPSIAEY 293
Query: 404 -RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG---GYGKQGKYDEVR 459
S + ++K + EA+ VC E ++ + NAL Y + YDE
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSE----VLQMEPDNVNALKDRAEAYLIEEMYDEAI 349
Query: 460 RMFEQ 464
+ +E
Sbjct: 350 QDYET 354
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 18/168 (10%), Positives = 48/168 (28%), Gaps = 16/168 (9%)
Query: 372 YSTMIDGYAKAGRLDDALNMFSE-----MKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426
Y+ + A +L+ A + + + + ++ + L R EA+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 427 CKEM----ESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQ-----MKADCVSPNLLTY 477
++ +G A G + + +++Q + +
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLV 525
+ + + EA + K+ + ++ Y LV
Sbjct: 159 GKASRLLVRQQKFDEAAASLQ--KEKSMYKEMENYPTCYKKCIAQVLV 204
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 30/195 (15%), Positives = 61/195 (31%), Gaps = 35/195 (17%)
Query: 379 YAKAGRLDDALNMF----------SEMKFLGIGLDRVSYNTVLS-----IYAKLGRFEEA 423
+AG+ A++ F +EM + ++ L+ Y K +++A
Sbjct: 14 AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73
Query: 424 LLVCKEMESSGIRKD---AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP-NLLTYST 479
L KE ++K A +G+ + RM+E K + NL
Sbjct: 74 YLFYKE----LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYE--KILQLEADNLAANIF 127
Query: 480 L-IDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEM 535
L Y K+ ++ + L + + E A + L ++
Sbjct: 128 LGNYYYLTAEQEKKKLE---TDYKK-LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183
Query: 536 TKEGIRPNVVTYNSI 550
P+ ++
Sbjct: 184 IL--RFPSTEAQKTL 196
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.63 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.43 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.41 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.28 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.27 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.26 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.08 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.01 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.0 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.87 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.84 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.75 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.69 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.61 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.61 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.59 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.51 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.49 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.48 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.47 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.45 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.39 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.39 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.39 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.38 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.28 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.28 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.21 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.2 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.15 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.1 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.09 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.01 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.01 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.96 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.96 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.86 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.83 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.79 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.68 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.68 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.42 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.24 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.16 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.14 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.12 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.07 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.97 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.97 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.83 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.81 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.49 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.41 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.41 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.84 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.91 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.91 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.86 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.6 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.74 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.71 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.43 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.11 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.93 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.13 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.66 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.68 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.36 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.14 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.17 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.73 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 84.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.61 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.36 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.81 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.69 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.0 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=385.55 Aligned_cols=493 Identities=12% Similarity=0.037 Sum_probs=409.0
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
..+.|..++..+.+.|++++|+++|++++... ++ ...+..++.+|.+.|++++|+.+|+++... +++..+++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 35678889999999999999999999999664 22 256788999999999999999999998653 5689999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRY---------------NLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR 299 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~ 299 (820)
+.+|.+.|++++|+++|+++... +...+..+|+.++.+|.+.| ++++|+++|++|.+.+.. +.
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS-NFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCch-hh
Confidence 99999999999999999954321 22335889999999999999 999999999999986533 55
Q ss_pred HHHHHHHHHHHhCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAAR--NL-FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMI 376 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~--~~-~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 376 (820)
..+..+...+...+..+.+. .+ +..+...+......+|+.++..|.+.|++++|+++|+++.+. .++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 66666665554443332222 22 555555544455667888899999999999999999999875 46999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
.+|.+.|++++|+++|+++.+.+ +.+..+++.++.+|.+.|++++|..+++++.+.. +.+..+|+.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 99999999999999999999875 4577889999999999999999999999998655 668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
+|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..+|+.++.+|.+.|++++|+++|++|.
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998753 45688999999999999999999999999998764 388999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCC
Q 003433 537 KEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQG 616 (820)
Q Consensus 537 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (820)
+.. ..+..+|..++.+|.+.|++++|++.++++++.
T Consensus 469 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------------- 504 (597)
T 2xpi_A 469 ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL------------------------------------------- 504 (597)
T ss_dssp HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------------------------------------------
Confidence 853 336789999999999999888776654433321
Q ss_pred ccchhhhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccch
Q 003433 617 KKENRCRQEILCILGVFQKMHKLKIKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNI 693 (820)
Q Consensus 617 ~~~~~~~~~~~~Al~~~~~m~~~~~~Pd--~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 693 (820)
.. +.+..|+ ..+|..++.+|.+.|++++|.++|+++.+.+|.+..+...+...+ ..|+
T Consensus 505 ----------------~~---~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 505 ----------------VK---KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp ----------------HH---HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred ----------------hh---ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 11 2256787 678999999999999999999999999988888777766666555 5789
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 694 WVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 694 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+++|...|+++++++|++ ...+..|+++|..
T Consensus 566 ~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 566 PGLAITHLHESLAISPNE-IMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcCCCC-hHHHHHHHHHHhc
Confidence 999999999999999965 6678888887753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=361.85 Aligned_cols=478 Identities=11% Similarity=0.008 Sum_probs=391.9
Q ss_pred HHHHHHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhc
Q 003433 127 EALHHVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRL 206 (820)
Q Consensus 127 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (820)
..+..+...+..+ .+..++..+.....+...+..++..|.+.|++++|+++|+.+... +.+..++..++.+|.+.
T Consensus 89 ~~~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 89 LWRHDALMQQQYK-CAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY----NRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHTTCHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG----GTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCch-HHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHH
Confidence 3344444444433 333444443323335567888999999999999999999988654 34456899999999999
Q ss_pred CChHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003433 207 GKVDLAKNIFETALNE---------------GYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVID 271 (820)
Q Consensus 207 g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 271 (820)
|++++|+++|+++... +...++.+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+..
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999999964322 12335899999999999999999999999999985533 5666666666
Q ss_pred HHHcCCCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 272 ACGKGGVDFKHVV--EI-FDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (820)
Q Consensus 272 ~~~~~g~~~~~A~--~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 348 (820)
.+...+ ..+.+. .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|
T Consensus 243 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 243 NHLLTA-DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp TTCSCH-HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred hhcccc-hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 554443 222221 11 555555555555667788888999999999999999999876 578999999999999999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++++|+++|+++.+.+.. +..+|+.++.+|.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999987644 78899999999999999999999999998764 6678999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD 508 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 508 (820)
++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 474 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-D 474 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Confidence 998765 5678999999999999999999999999999874 558899999999999999999999999999987654 8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhh
Q 003433 509 VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN--VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDA 582 (820)
Q Consensus 509 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~ 582 (820)
..+|+.++..|.+.|++++|+++|++|.+. +..|+ ..+|..++.+|.+.|++++|++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~----------------- 537 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID----------------- 537 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH-----------------
Confidence 999999999999999999999999999875 66888 7799999999999988776654
Q ss_pred hhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCH
Q 003433 583 MCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSF 661 (820)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~ 661 (820)
+|+++++. .| +..+|..++.+|.+.|++
T Consensus 538 -------------------------------------------------~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~ 566 (597)
T 2xpi_A 538 -------------------------------------------------ALNQGLLL--STNDANVHTAIALVYLHKKIP 566 (597)
T ss_dssp -------------------------------------------------HHHHHHHH--SSCCHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------------------------HHHHHHHh--CCCChHHHHHHHHHHHHhCCH
Confidence 55555542 34 678899999999999999
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 662 EDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
++|.++|+++++.+|++......+.
T Consensus 567 ~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 567 GLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999998877655443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-28 Score=261.11 Aligned_cols=382 Identities=15% Similarity=0.149 Sum_probs=333.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+...+.+.|++++|++.|..+++.. |.+..++..+...+...|++++|...++.+++.. +.+..+|..++.+|.+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~ 80 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 4566788999999999999998874 5556678889999999999999999999998875 45889999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
|++++|++.|+++.+.... +..+|..+..++.+.| ++++|.+.|+++++.... +...+..+...+...|++++|.++
T Consensus 81 g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHH
Confidence 9999999999999875322 5668999999999999 999999999999986433 456778888899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (820)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (820)
|+++.+.. +.+..+|+.+...|.+.|++++|+..|+++.+.+.. +...|..+...+...|++++|+..|++..... +
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 99999874 446889999999999999999999999999987543 67889999999999999999999999998874 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
.+..++..+...|.+.|++++|+..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+++.+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 567899999999999999999999999999876 5578899999999999999999999999998863 66889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 558 (820)
..|.+.|++++|...|+++.+..+ .+..+|..++..|.+.|++++|+..|+++++. .|+ ...|..+...+...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999999999999999999988653 36889999999999999999999999999974 454 457777777665554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-27 Score=255.71 Aligned_cols=377 Identities=14% Similarity=0.127 Sum_probs=208.9
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLA 353 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A 353 (820)
.+.| ++++|++.++++.+.... +...+..+...+...|++++|...++..++.. +.+..+|..+...|.+.|++++|
T Consensus 10 ~~~g-~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 10 YQAG-DFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 3444 555555555555443211 33344444444555555555555555554432 33445555555555555555555
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 354 FEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS 433 (820)
Q Consensus 354 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 433 (820)
++.|+++.+.... +..+|..+..+|.+.|++++|++.|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5555555543211 33445555555555555555555555555542 223344455555555556666666666555544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 434 GIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 434 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
. +.+..+|+.+...|.+.|++++|...|+++++.+ +.+...|..+...+...|++++|...|++..+..+. +..+|.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHH
Confidence 3 3345556666666666666666666666665542 233455566666666666666666666666554322 455666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhh
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQ 592 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (820)
.++..|.+.|++++|+..|+++++. .| +..+|..+..++.+.|++++|+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~--------------------------- 292 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED--------------------------- 292 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHH---------------------------
Confidence 6666666666666666666666653 22 34455555555555555544433
Q ss_pred hhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 003433 593 EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELR 672 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~ 672 (820)
.|+++++. ...+..++..++..+...|++++|.++|++++
T Consensus 293 ---------------------------------------~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 293 ---------------------------------------CYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp ---------------------------------------HHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred ---------------------------------------HHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333331 11244556666666777777777777777776
Q ss_pred hcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc
Q 003433 673 LFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 673 ~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (820)
+.+|++......+...+ +.|++++|+..|+++++++|+. ...|..++.+|...|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 66666555555544443 4666777777777777777754 5567778887777653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=274.20 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR---------FEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++|.++|++|.+.|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344444444444444444444444444444444444444444443322 45555666666666666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 556 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 556 (820)
|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666655544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=270.87 Aligned_cols=205 Identities=15% Similarity=0.183 Sum_probs=147.8
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 003433 318 ARNLFNEMVHRGIDQD-IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGR---------LDD 387 (820)
Q Consensus 318 A~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~ 387 (820)
+..+.+++.+.+.... ..+++.+|++|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 3344444554444333 234566666666666666666666666666666666666666666665443 677
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
.|+.||..||++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888888877653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-23 Score=236.77 Aligned_cols=449 Identities=11% Similarity=0.006 Sum_probs=244.3
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+......+.+.|++++|++.|++++... + +..++..++.++.+.|++++|+..|+++++.++ .+..+|..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHH
Confidence 3456677888889999999999999998875 2 356888899999999999999999999988753 4778889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|.+.|++++|+..|+++.+.+. ++......++..+.... ....+.+.+..+...+..++...+..-..........
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQ-AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHH-HHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 999999999999999999887653 23344444444443333 3333333333332222222222111110000000000
Q ss_pred HHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHchh-----CCCC--------CCHH
Q 003433 316 EAARNLFNEMVHRGI---------DQDIFTYNTLLDAICK---GAQMDLAFEIMAEMPA-----KNIS--------PNVV 370 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~---------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~ 370 (820)
.....+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 000001101100000 1113333333333333 5556666666655554 2001 1233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
++..+...|...|++++|+..|+++.+.. |+...+..+...|...|++++|+..++++.+.. +.+..+|..+...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 315 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNF 315 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHH
Confidence 44555555555555555555555555542 224455555555555555555555555555443 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
..|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.... +...|..++..|.+.|++++|..
T Consensus 316 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555555555442 223445555555555555555555555555544322 34455555555555555555555
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhh---cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHH
Q 003433 531 LLDEMTKEGI-RPN----VVTYNSIIDAFGR---SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQII 602 (820)
Q Consensus 531 ~~~~m~~~g~-~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (820)
.|+++.+... .++ ..++..+..++.. .|
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------------------- 429 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE-------------------------------------------- 429 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT--------------------------------------------
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC--------------------------------------------
Confidence 5555543210 001 1134444444444 33
Q ss_pred HHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHH
Q 003433 603 KVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGV 681 (820)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~ 681 (820)
++++|+..|++++. ..| +..++..++.+|.+.|++++|.+.|+++.+.+|.+..+
T Consensus 430 ----------------------~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 430 ----------------------NFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp ----------------------HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred ----------------------CHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 44455566666655 234 45667888889999999999999999998888877665
Q ss_pred HHH
Q 003433 682 AHG 684 (820)
Q Consensus 682 ~~~ 684 (820)
...
T Consensus 486 ~~~ 488 (514)
T 2gw1_A 486 LQA 488 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-23 Score=234.80 Aligned_cols=454 Identities=12% Similarity=0.020 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 273 (820)
..+...+..+.+.|++++|+..|+++++.+ |+..+|..++.+|.+.|++++|+..|+++.+.+.. +..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHH
Confidence 466778888999999999999999998875 58889999999999999999999999999875532 677888999999
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CH
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QM 350 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~ 350 (820)
.+.| ++++|...|+++...+. .+......++..+........+.+.+..+...+..++...++.......... ..
T Consensus 84 ~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLG-KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTT-CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHh-hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999 99999999999988754 2444444444444443333444444433332221222111111111111111 11
Q ss_pred HHHHHHHHHchhC------CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHHH
Q 003433 351 DLAFEIMAEMPAK------NISPNVVTYSTMIDGYAK---AGRLDDALNMFSEMKF-----LGI--------GLDRVSYN 408 (820)
Q Consensus 351 ~~A~~~~~~m~~~------g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~--------~~d~~~~~ 408 (820)
..+...+...... .-..+...+..+...+.. .|++++|+.+|+++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111110 001124445555555554 7889999999888877 311 12345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 409 TVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (820)
Q Consensus 409 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 488 (820)
.+...+...|++++|...|+++.+.. |+..++..+...|...|++++|...|+++.... +.+..++..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 77888888888888888888887765 337778888888888888888888888887763 445677888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVE 568 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 568 (820)
++++|...|+++.+.... +...+..++..|...|++++|+..|+++.+.. ..+..++..+..++.+.|++++|+..++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888876543 56778888888888888888888888887642 2245577777777878887777766555
Q ss_pred HHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 569 RDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTF 648 (820)
Q Consensus 569 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~ 648 (820)
+++...+... ...-...++
T Consensus 397 ~a~~~~~~~~-------------------------------------------------------------~~~~~~~~~ 415 (514)
T 2gw1_A 397 LAIELENKLD-------------------------------------------------------------GIYVGIAPL 415 (514)
T ss_dssp HHHHHHHTSS-------------------------------------------------------------SCSSCSHHH
T ss_pred HHHHhhhccc-------------------------------------------------------------hHHHHHHHH
Confidence 4443322110 000013467
Q ss_pred HHHHHHHhc---cCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 003433 649 SAILNACSR---CNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (820)
Q Consensus 649 ~~ll~a~~~---~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (820)
..++.+|.. .|++++|.+.|+++...+|.+..+...+...+ ..|++++|...++++++++|.+ ...+..+
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 489 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI 489 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 888889999 99999999999999888777666555544444 5677888888888888888754 4434443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-22 Score=221.49 Aligned_cols=383 Identities=14% Similarity=0.071 Sum_probs=241.4
Q ss_pred HHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003433 146 LKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (820)
Q Consensus 146 l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (820)
...+...+.+.+.+..++..+.+.|++++|+++|+.++... +.+..++..++.++...|++++|...|+++++.++
T Consensus 16 ~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 91 (450)
T 2y4t_A 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM- 91 (450)
T ss_dssp -------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred cccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 33344344445556666666777777777777777666552 33445666666777777777777777777666543
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNL----VTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT 301 (820)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~ 301 (820)
.+..++..++.+|.+.|++++|+++|+++.+.. |+. ..+..++..+... .
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~------------------------~ 145 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ------------------------R 145 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH------------------------H
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH------------------------H
Confidence 256666667777777777777777777666532 332 3444443331110 1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK 381 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 381 (820)
+..+...+...|++++|+.+|+++.+.. +.+..++..++.+|.+.|++++|+++|+++.+... .+..+|..++.+|..
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 1222344666777777777777777653 34566777777777777777777777777765432 256777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 003433 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTV------------LSIYAKLGRFEEALLVCKEMESSGIRKD----AVTYNAL 445 (820)
Q Consensus 382 ~g~~~~A~~~~~~m~~~~~~~d~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l 445 (820)
.|++++|+..|+++.+.. +.+...+..+ +..|.+.|++++|+..|+++.+.. +.+ ...|..+
T Consensus 224 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHH
Confidence 777777777777776653 2333444333 677888888888888888887643 222 3467777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Q 003433 446 LGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDA------- 518 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------- 518 (820)
..++.+.|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +...+..+..+
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~ 379 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQS 379 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcc
Confidence 888888888888888888877652 346778888888888888888888888888775433 55666666532
Q ss_pred -----HHHcC-----CHHHHHHHHHHH-HHCC--CCCCH-------HHHHHHHHHHhhcCchhhhH
Q 003433 519 -----LCKNG-----LVESAVSLLDEM-TKEG--IRPNV-------VTYNSIIDAFGRSATTECTV 564 (820)
Q Consensus 519 -----~~~~g-----~~~~A~~~~~~m-~~~g--~~p~~-------~~~~~ll~~~~~~g~~~~a~ 564 (820)
|...| +.+++.+.|+++ ++.. ..++. ..+..+..+|...|+.++..
T Consensus 380 ~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 33334 567778888873 3321 11221 26667777777777766553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=229.26 Aligned_cols=458 Identities=11% Similarity=0.067 Sum_probs=280.4
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|+.++... |.+..++..++.+|.+.|++++|++.|+++++.++ .+..++..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 4556677777888888888888888887764 44456777777888888888888888888777643 3677777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|...|++++|+..|+.+ .. .|+.. ...+..+...+ ....|...+++++.... +.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~-~~~~a~~~~~~~l~~~~--~~---------------- 156 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERN-LNKQAMKVLNENLSKDE--GR---------------- 156 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C---------------CHHHHH-HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHH-HHHHHHHHHHHHHHhCc--cc----------------
Confidence 7777778888887777533 21 12211 11222333333 44556666665543210 00
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHH-HHHHHHHHH--------HHcCCHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVV-TYSTMIDGY--------AKAGRLD 386 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~--------~~~g~~~ 386 (820)
.....|+. ..+..+....+.+.+...+.+.... .+... ....+...+ ...|+++
T Consensus 157 -----------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 219 (537)
T 3fp2_A 157 -----------GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLT 219 (537)
T ss_dssp -------------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred -----------cccccchH----hHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 00001111 1122233333344443333333221 11111 111111111 1124667
Q ss_pred HHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 387 DALNMFSEMKFLGIGLD-------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
+|+.+|+++.+.. +.+ ..++..+...+...|++++|+..|+++.+.. |+..+|..+...|...|++++|.
T Consensus 220 ~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 220 KSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHH
Confidence 7777777766553 222 2245566667777788888888888877654 45777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 460 RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 460 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 539 (820)
..|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...|..+...|...|++++|+..|+++.+..
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888877653 445777888888888888888888888888776543 56778888888888888888888888887752
Q ss_pred CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 540 IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 540 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
..+..++..+..++.+.|++++|+..++++++..+........+ ..+......+.... .....
T Consensus 375 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~~-----~~~~~ 437 (537)
T 3fp2_A 375 -PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI-----------GPLIGKATILARQS-----SQDPT 437 (537)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT-----------HHHHHHHHHHHHHH-----TC---
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH-----------HHHHHHHHHHHHHh-----hccch
Confidence 22455778888888888888888888888887766543111000 00111112222110 00000
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHH
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVA 682 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 682 (820)
....+++++|+..|+++++ ..| +..++..++.+|.+.|++++|.+.|+++.+.+|......
T Consensus 438 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred hhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 1111588899999999987 455 467789999999999999999999999998888765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-22 Score=221.78 Aligned_cols=333 Identities=14% Similarity=0.096 Sum_probs=198.2
Q ss_pred HHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHH
Q 003433 132 VTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDL 211 (820)
Q Consensus 132 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 211 (820)
+...+....++...-..+...+..+..+..++..+...|++++|++.|+++++.+ +.+..++..++.+|.+.|++++
T Consensus 36 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK---MDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444455567889999999999999999999999999885 4556788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 212 AKNIFETALNEGYGNTV---YAFSALISA------------YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 212 A~~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
|...|+++.+..+ .+. .++..++.. +.+.|++++|+.+|+++.+... .+...+..+...+.+.
T Consensus 113 A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 113 AEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKE 190 (450)
T ss_dssp HHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHC
Confidence 9999999998643 255 777777655 5555666666666665554322 1455555555555555
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEI 356 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 356 (820)
| ++++|++.|+++.+... .+..++..++.+|...|++++|+..|+++.+.. +.+...+..+...
T Consensus 191 g-~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~------------- 254 (450)
T 2y4t_A 191 G-EPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------------- 254 (450)
T ss_dssp T-CGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------------
T ss_pred C-CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH-------------
Confidence 5 55555555555554322 244555555555555555555555555555432 1122223222000
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD-----RVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d-----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
. ....+..+...|.+.|++++|+.+|+++.+. .|+ ...+..+...+.+.|++++|+..++++.
T Consensus 255 ----~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 255 ----K------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp ----H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ----H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 0001112255566666666666666666554 222 2345556666666666666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHH
Q 003433 432 SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV------------YSKGG-----LYKEAM 494 (820)
Q Consensus 432 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~ 494 (820)
+.. +.+..+|..+..+|.+.|++++|...|+++++.. +-+...+..+..+ |...| +.+++.
T Consensus 323 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~ 400 (450)
T 2y4t_A 323 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII 400 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence 443 3455666666666666666666666666666542 2234444444422 33333 456667
Q ss_pred HHHHH
Q 003433 495 QIFRE 499 (820)
Q Consensus 495 ~~~~~ 499 (820)
+.|++
T Consensus 401 ~~y~~ 405 (450)
T 2y4t_A 401 KAYRK 405 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-22 Score=224.39 Aligned_cols=426 Identities=13% Similarity=0.055 Sum_probs=320.2
Q ss_pred HHHhccCCcchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChH
Q 003433 131 HVTAFARDDVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVD 210 (820)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 210 (820)
.+...+..+.++...-..+...+.++..+..+...+.+.|++++|++.|++++..+ |.+..++..++.++...|+++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~ 110 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK---PDHSKALLRRASANESLGNFT 110 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHcCCHH
Confidence 44556677777777777777777788899999999999999999999999999885 556678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCCCHHHHH
Q 003433 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKPNLVTYNAVIDACGKGGVDFKHVV 284 (820)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~~A~ 284 (820)
+|+..|+ ..... |+ .....+..+...+...+|+..++++... ...|+.... ..+.... +.+.+.
T Consensus 111 ~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~ 180 (537)
T 3fp2_A 111 DAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL----ASFFGIF-DSHLEV 180 (537)
T ss_dssp HHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH----HHHHHTS-CHHHHH
T ss_pred HHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH----HHHHHhc-ChHHHH
Confidence 9999997 44332 22 2333455666777788999999999653 123444433 3344444 556555
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcC
Q 003433 285 EIFDDMLRNGVQPDRI-TFNSLLAVCSR--------GGLWEAARNLFNEMVHRGIDQD-------IFTYNTLLDAICKGA 348 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~-~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~g~~~~-------~~~~~~ll~~~~~~g 348 (820)
..+...... .+... ....+...+.. .|++++|..+|+++.+... .+ ..++..+...+...|
T Consensus 181 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 181 SSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHHHHHHHHHHHHHHhcc
Confidence 554433321 22222 22333333222 2578999999999987642 22 335777778889999
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
++++|+..|+++.+.. |+..+|..+...|...|++++|++.|+++.+.. +.+..++..+...|...|++++|+..|+
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999998863 567888999999999999999999999998875 5578889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---
Q 003433 429 EMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--- 505 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--- 505 (820)
++.+.. +.+...|..+...|.+.|++++|..+|+++.+.. +.+...+..+...|...|++++|.+.|+++.+...
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 998765 4567889999999999999999999999998763 45677889999999999999999999999876431
Q ss_pred --CCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 506 --KADVVLYSALIDALCKN----------GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 506 --~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
......+..+...+.+. |++++|+..|+++++.. ..+..++..+..++.+.|++++|+..++++++.
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 11233345556777888 99999999999998853 235678999999999999999999999999988
Q ss_pred hhhhh
Q 003433 574 QKESA 578 (820)
Q Consensus 574 ~~~~~ 578 (820)
.+...
T Consensus 492 ~~~~~ 496 (537)
T 3fp2_A 492 ARTMD 496 (537)
T ss_dssp C--CH
T ss_pred CCCcH
Confidence 77653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-17 Score=184.87 Aligned_cols=400 Identities=11% Similarity=0.016 Sum_probs=266.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHH
Q 003433 213 KNIFETALNEGYGNTVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVV 284 (820)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~~A~ 284 (820)
...+....+.| +..++..|...|.. .+++++|+.+|++..+.| +...+..|...|.. .+ ++++|+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHH
Confidence 44444444432 56666677777766 677777777777776643 55666666666666 56 777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003433 285 EIFDDMLRNGVQPDRITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEI 356 (820)
Q Consensus 285 ~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~ 356 (820)
++|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777653 55666666666766 667777777777777764 56667777777766 6677777777
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCK 428 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~ 428 (820)
|++..+.| +...+..|...|.. .++.++|+++|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77777654 66677777777776 677777877777777654 45666667777765 677778887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003433 429 EMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG-----GLYKEAMQIFRE 499 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 499 (820)
+..+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 777643 45566666666766 777888888888777654 556667777777766 778888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhh
Q 003433 500 FKQAGLKADVVLYSALIDALCKNG---LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 500 m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~ 576 (820)
..+.| +...+..|...|...| +.++|++.|++..+.| +...+..|...|.....
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g----------------- 378 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKG----------------- 378 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS-----------------
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC-----------------
Confidence 77754 5566777777777655 6777888887777653 45555555555543100
Q ss_pred hhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 003433 577 SANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACS 656 (820)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~ 656 (820)
..++.++|+..|++..+.| +...+..|+..|.
T Consensus 379 ---------------------------------------------~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~ 410 (490)
T 2xm6_A 379 ---------------------------------------------VKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYY 410 (490)
T ss_dssp ---------------------------------------------SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred ---------------------------------------------CCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 0014556777777777654 4666778888888
Q ss_pred c----cCCHHHHHHHHHHHhhcCCc---hhHHHHHHHhccccchHHHHHHHHHHHhhcCC
Q 003433 657 R----CNSFEDASMLLEELRLFDNQ---VYGVAHGLLMGYRDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 657 ~----~g~~~eA~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 709 (820)
+ .++.++|...|+++.+.+++ +......+... ......+|+.+.++.++..|
T Consensus 411 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~-~~~~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 411 YGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL-TAKQLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc-CHhHHHHHHHHHHHHHHHHH
Confidence 7 78999999999998877633 44333333222 22344555555555555444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-18 Score=185.64 Aligned_cols=330 Identities=15% Similarity=0.089 Sum_probs=220.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+..+...+...|++++|++.|+.+++.. +.+..++..++.++...|++++|...|+++++..+ .+..+|..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD---PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHH
Confidence 4567778888999999999999999998874 44566888899999999999999999999988743 3678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR 311 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 311 (820)
..|...|++++|+..|+++.+. .| +...+..+.... . ...+..+...+..
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~--------~----------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD--------E----------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH--------H----------------HHHHHHHHHHHHH
Confidence 9999999999999999999874 34 222333221100 0 0112233445556
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
.|++++|..+++++.+.. +.+..++..+...+.+.|++++|+..++++.+... .+..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665543 23455566666666666666666666666655432 2455666666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCH
Q 003433 392 FSEMKFLGIGLDRVSYN------------TVLSIYAKLGRFEEALLVCKEMESSGIRKDA----VTYNALLGGYGKQGKY 455 (820)
Q Consensus 392 ~~~m~~~~~~~d~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~ 455 (820)
|++..+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..+|.+.|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66665542 22222222 23556777788888888887776654 2233 2344566777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK 521 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 521 (820)
++|...|++..+.. +.+..++..+...|...|++++|...|+++.+..+. +...+..+..+...
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 88888888777652 346777777888888888888888888888776532 46666666665544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-18 Score=184.52 Aligned_cols=330 Identities=13% Similarity=0.125 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003433 194 KLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDAC 273 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 273 (820)
..+..++..+...|++++|...|+++++..+ .+..++..++..|...|++++|+..|+++.+.... +...|..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 3566777888888888888888888877643 36778888888888888888888888888764322 567777777778
Q ss_pred HcCCCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 274 GKGGVDFKHVVEIFDDMLRNGVQP----DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ 349 (820)
Q Consensus 274 ~~~g~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 349 (820)
...| ++++|...|+++.+. .| +...+..+..... ...+..+...+...|+
T Consensus 82 ~~~~-~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQG-KLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHT-CHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHcC-ChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 8888 788888888888765 33 2222222222111 1224446788999999
Q ss_pred HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 350 MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKE 429 (820)
Q Consensus 350 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~ 429 (820)
+++|+++|+++.+... .+...+..+...|...|++++|+..++++.+.. +.+..++..+...|...|++++|...|++
T Consensus 136 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999987654 378889999999999999999999999999875 56788999999999999999999999999
Q ss_pred HHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 003433 430 MESSGIRKDAVTYN------------ALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 430 ~~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A 493 (820)
+.+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..+|.+.|++++|
T Consensus 214 a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 98765 44555443 23667999999999999999998863 2233 2355688899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSA 558 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g 558 (820)
...|+++.+... .+..+|..+...|.+.|++++|...|+++++. .|+ ...+..+..+....+
T Consensus 292 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 292 IRICSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH
Confidence 999999998753 37899999999999999999999999999985 455 556777776665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-17 Score=183.01 Aligned_cols=353 Identities=14% Similarity=0.040 Sum_probs=302.0
Q ss_pred ChhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 003433 155 GADDYTFLLRELGN----RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGR----LGKVDLAKNIFETALNEGYGN 226 (820)
Q Consensus 155 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 226 (820)
+++.+..+...|.. .+++++|++.|+++...+ +..++..|...|.. .+++++|...|+++.+.|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 46667777777877 899999999999998763 23477888999988 899999999999998864
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCCCC
Q 003433 227 TVYAFSALISAYGR----SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK----GGVDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 227 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~~A~~~~~~m~~~g~~p~ 298 (820)
+..++..|...|.. .+++++|+.+|++..+.| +...+..|...|.. .+ ++++|++.|++..+.| +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCC---C
Confidence 67888889999988 889999999999998864 67778888888876 66 8999999999999864 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCCCHH
Q 003433 299 RITFNSLLAVCSR----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVV 370 (820)
Q Consensus 299 ~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~ 370 (820)
...+..|...|.. .++.++|..+|++..+.| +...+..|...|.. .+++++|+++|++..+.| +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 7888888888887 899999999999999875 67888889998887 889999999999988764 677
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 371 TYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL-----GRFEEALLVCKEMESSGIRKDAVT 441 (820)
Q Consensus 371 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~ 441 (820)
.+..+...|.. .++.++|+++|++..+.| +...+..|...|... ++.++|+..|++..+.| +...
T Consensus 257 a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a 330 (490)
T 2xm6_A 257 AQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATA 330 (490)
T ss_dssp HHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHH
Confidence 88888888888 899999999999998765 566778888888887 89999999999998865 5677
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 442 YNALLGGYGKQG---KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 442 ~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+..+...|.+.| +.++|.+.|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~ 404 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHH
Confidence 888888888766 7899999999998874 78888999999988 899999999999998865 6788888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 003433 515 LIDALCK----NGLVESAVSLLDEMTKEGI 540 (820)
Q Consensus 515 li~~~~~----~g~~~~A~~~~~~m~~~g~ 540 (820)
|...|.+ .++.++|...|++..+.+.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999988 8999999999999998653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-16 Score=182.19 Aligned_cols=361 Identities=11% Similarity=0.112 Sum_probs=252.3
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFS 232 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 232 (820)
..+|+.....+++|...|.+.+|++++++++..+....++..+-+.++.+..+. +..+..+...+.-+. ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 446777778888888888888888888888854321223344555566655555 445554444444321 134
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
-+...+...|.+++|..+|++... .....+.++. ..+ ++++|.+++++.. +..+|..+..++.+.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 477778888888888888888632 3333344443 445 7888888887552 567788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
|++++|+..|.+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 8888888888554 367778888888888888888888888776653 23333445888888888887533332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003433 393 SEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSP 472 (820)
Q Consensus 393 ~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 472 (820)
. .++...|..+.+.|...|++++|..+|... ..|..++..|.+.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 445667777888888888888888888774 37888888888888888888888876 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+.|..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 66888888888888888888887665432 366677788888888999999999888877542 223336655555
Q ss_pred HHh--hcCchhhhHHhHHHHhh
Q 003433 553 AFG--RSATTECTVDDVERDLG 572 (820)
Q Consensus 553 ~~~--~~g~~~~a~~~~~~~l~ 572 (820)
.++ +-+++.++.+.+...+.
T Consensus 1323 LyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcc
Confidence 554 44566666666554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-17 Score=183.42 Aligned_cols=415 Identities=11% Similarity=0.074 Sum_probs=311.2
Q ss_pred cCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003433 152 KLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 152 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
.+.+.+.|..++. +.+.|++++|+.+|++++... |.+..+|...+..+.+.|++++|+.+|++++... |++..|
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~---P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw 82 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLW 82 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHH
Confidence 4556778888888 478899999999999999874 5667789999999999999999999999999864 578888
Q ss_pred HHHHHH-HHhcCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHCCC
Q 003433 232 SALISA-YGRSGYCQEAIS----VFNSMKR-YNLKP-NLVTYNAVIDACGK---------GGVDFKHVVEIFDDMLRNGV 295 (820)
Q Consensus 232 ~~li~~-~~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~ll~~~~~---------~g~~~~~A~~~~~~m~~~g~ 295 (820)
..++.. ....|++++|.+ +|++... .|..| +...|...+....+ .| +++.|..+|++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ-RITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH-HHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh-HHHHHHHHHHHHHhchh
Confidence 888863 345688887776 7777654 35444 56778777776554 57 89999999999998311
Q ss_pred CCCHHHHHHHHHHH-------------HhCCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHH
Q 003433 296 QPDRITFNSLLAVC-------------SRGGLWEAARNLFNEMV------HRG---IDQD--------IFTYNTLLDAIC 345 (820)
Q Consensus 296 ~p~~~~~~~ll~~~-------------~~~g~~~~A~~~~~~~~------~~g---~~~~--------~~~~~~ll~~~~ 345 (820)
......|....... ...++++.|..++..+. +.. ++|+ ...|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 11123343322211 12456777887777632 211 2333 245666654433
Q ss_pred hc----CCH----HHHHHHHHHchhCCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHCCCCCC
Q 003433 346 KG----AQM----DLAFEIMAEMPAKNISPNVVTYSTMIDGYAK-------AGRLD-------DALNMFSEMKFLGIGLD 403 (820)
Q Consensus 346 ~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~d 403 (820)
.. ++. +.|+.+|++...... -+...|..++..+.+ .|+++ +|..+|++..+.-.+-+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 32 232 477889999887633 367889888888876 69977 99999999986322456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA-VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
...|..++..+.+.|++++|..+|+++++.. +.+. ..|..++..+.+.|++++|+.+|++..+.. +.+...|...+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHH
Confidence 8889999999999999999999999999864 3343 589999999999999999999999998863 223333333332
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcC
Q 003433 483 V-YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRPN--VVTYNSIIDAFGRSA 558 (820)
Q Consensus 483 ~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~g 558 (820)
. +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+....+.|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 3468999999999999988653 378999999999999999999999999999863 2332 458888888888899
Q ss_pred chhhhHHhHHHHhhhhhhh
Q 003433 559 TTECTVDDVERDLGKQKES 577 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~ 577 (820)
+.+.+..+..++++..|+.
T Consensus 478 ~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 478 DLASILKVEKRRFTAFREE 496 (530)
T ss_dssp CHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHCchh
Confidence 9999999999999988753
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.9e-16 Score=177.91 Aligned_cols=381 Identities=10% Similarity=0.115 Sum_probs=298.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 195 LASAMISILGRLGKVDLAKNIFETALNEGY--GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 195 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
-....+..|...|.+.+|+++++++.-.+- ..+....+.|+.+..+. +..+..++.++.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 446788999999999999999999984421 24566777788888877 556666666666531 2 3346777
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
+...| .+++|..+|++.. -.....+.++. ..+++++|.++.++. .+..+|..+..++.+.|++++
T Consensus 1059 ai~lg-lyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNE-LFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCC-CHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 88899 9999999999863 12233333332 778899999998866 247889999999999999999
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
|++.|.+. -|...|..++.+|.+.|++++|++.|...++.. ++....+.++.+|++.+++++.... ++
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 99999775 278889999999999999999999999888763 4444445699999999998864433 22
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 433 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 512 (820)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 457778888999999999999999999985 47999999999999999999999987 377999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhh
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQ 592 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 592 (820)
..+..+|...|++..|......+ .-+...+..++..|.+.|.+++|+.+++.+++..+...
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~-------------- 1314 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHM-------------- 1314 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHh--------------
Confidence 99999999999999999877653 33667788999999999999999999999998764432
Q ss_pred hhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHhccCCHHHHH
Q 003433 593 EAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP------NVVTFSAILNACSRCNSFEDAS 665 (820)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P------d~~~~~~ll~a~~~~g~~~eA~ 665 (820)
..++.+..+|.+. .-+++.+++++|..-.. +.| +...|.-+...|.+.|.++.|.
T Consensus 1315 ---gmftELaiLyaKy-------------~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1315 ---GMFTELAILYSKF-------------KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred ---HHHHHHHHHHHhC-------------CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3344444555532 12366678888875433 333 4566889999999999999998
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-18 Score=177.25 Aligned_cols=291 Identities=11% Similarity=0.017 Sum_probs=217.2
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
.+++.+..++..+...|++++|+++|+.+++..+ .+...+..++.++...|++++|..+++++.+... .+..+|..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP---FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 4567788888899999999999999999998753 3344667788889999999999999999988753 36788999
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 003433 234 LISAYGRSG-YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRG 312 (820)
Q Consensus 234 li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 312 (820)
+...+...| ++++|+..|+++.+.... +...|..+...+...| ++++|+..|+++.+.... +...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 999999999 999999999999875432 5677888888888888 899999999988876433 456666688888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC--------CCCCHHHHHHHHHHHHHcCC
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN--------ISPNVVTYSTMIDGYAKAGR 384 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~ 384 (820)
|++++|...++++.+.. +.+..++..+...|.+.|++++|+..|+++.+.. ...+..+|..+..+|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888888764 3456777778888888888888888887766531 12234566677777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY-GKQGK 454 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~ 454 (820)
+++|+..|+++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+..++ ...|+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 777777777766653 3345666666667777777777777776665544 34556666666555 34444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-18 Score=177.81 Aligned_cols=290 Identities=12% Similarity=-0.001 Sum_probs=200.2
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLL 341 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll 341 (820)
+...+..+...+...| ++++|+++|+++.+.... +...+..++..+...|++++|..+++++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 21 NLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 3344455555555566 666666666666654322 33444455566666667777777766666643 23456666677
Q ss_pred HHHHhcC-CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 342 DAICKGA-QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420 (820)
Q Consensus 342 ~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~ 420 (820)
..+...| ++++|++.|+++.+.... +...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 7777777 677777777776665422 45667777777777777777777777777653 33455666677777788888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 003433 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC--------VSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 421 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. .+.+..++..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888777655 5567778888888888888888888888776531 13345688888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH-hhcCch
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAF-GRSATT 560 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~-~~~g~~ 560 (820)
|...|+++.+.... +...|..+...|.+.|++++|.+.|+++++. .| +..++..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCch
Confidence 99998888876543 6778888888999999999999999988874 44 455777777777 455554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-17 Score=184.59 Aligned_cols=385 Identities=8% Similarity=-0.071 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-----C-
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHR--------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-----N- 364 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----g- 364 (820)
...|+.|..++...|++++|++.|++.++. .-.....+|+.+..+|...|++++|+..+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456777777777777777777777776542 11223556666777777777777777776665431 0
Q ss_pred CC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 365 IS-PNVVTYSTMIDGYAKA--GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI---YAKLGRFEEALLVCKEMESSGIRKD 438 (820)
Q Consensus 365 ~~-p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 438 (820)
.. ....++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 00 1234455444444443 34666666666666553 2233344333333 233455566666666655543 344
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 439 AVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 439 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...|++..+..+. +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 5555544444433 345556666666655542 334555666666666666666666666666655432 4455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhh
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEA 594 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 594 (820)
+...|...+....+.. ...........+..++|+..++++++..+...
T Consensus 287 lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------- 334 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLF---------------- 334 (472)
T ss_dssp HHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTC----------------
T ss_pred HHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh----------------
Confidence 5544432211100000 00000011112234566666666666555432
Q ss_pred ccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHhccCCHHHHHHHHHHH
Q 003433 595 GRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNV--VTFSAILN-ACSRCNSFEDASMLLEEL 671 (820)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~--~~~~~ll~-a~~~~g~~~eA~~~~~~~ 671 (820)
..+..+...|.. .+++++|++.|++.++....+.. ..+..++. ...+.|+.++|+..|+++
T Consensus 335 -~~~~~lg~~~~~---------------~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 335 -RVCSILASLHAL---------------ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp -CCHHHHHHHHHH---------------TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHH---------------hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233334444443 34788999999999885443322 12334443 345779999999999999
Q ss_pred hhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 672 RLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
++++|..... .+....++.++++.++.+|.+ +..|+.||.+|...|++++|.+.++++++.+..
T Consensus 399 l~i~~~~~~~---------~~~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 399 VKINQKSREK---------EKMKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHSCCCCHHH---------HHHHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC---------------
T ss_pred HhcCcccHHH---------HHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9988876542 234567788889999999965 677999999999999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-16 Score=180.06 Aligned_cols=434 Identities=10% Similarity=0.046 Sum_probs=254.2
Q ss_pred HHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 003433 179 FAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
|+.+++.+ |.+..++..++. +.+.|++++|+.+|+++++. .+.+...|..++..+.+.|++++|..+|+++.+.
T Consensus 2 le~al~~~---P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~- 75 (530)
T 2ooe_A 2 AEKKLEEN---PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK- 75 (530)
T ss_dssp HHHHHHHC---TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-
T ss_pred hhhHhhhC---CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Confidence 45566653 556678888888 47889999999999999987 4557889999999999999999999999999974
Q ss_pred CCCCHHHHHHHHHHH-HcCCCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHH
Q 003433 259 LKPNLVTYNAVIDAC-GKGGVDFKHVVE----IFDDMLR-NGVQP-DRITFNSLLAVCSR---------GGLWEAARNLF 322 (820)
Q Consensus 259 ~~p~~~~~~~ll~~~-~~~g~~~~~A~~----~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~A~~~~ 322 (820)
.|+...|...+... ...| +.+.|.+ +|++.+. .|..| +...|...+....+ .|+++.|..+|
T Consensus 76 -~p~~~lw~~~~~~~~~~~~-~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 -VLHIDLWKCYLSYVRETKG-KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp -CCCHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 47888887777543 3345 5555544 7777764 35443 45677777766554 67889999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------
Q 003433 323 NEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK------ 396 (820)
Q Consensus 323 ~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~------ 396 (820)
++.++.........|..........|. ..+..++. .+.++++.|..+++++.
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHh
Confidence 998873111112333332221111110 00111110 01233444444444321
Q ss_pred HCC---CCCC--------HHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------
Q 003433 397 FLG---IGLD--------RVSYNTVLSIYAKL----GRF----EEALLVCKEMESSGIRKDAVTYNALLGGYGK------ 451 (820)
Q Consensus 397 ~~~---~~~d--------~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~------ 451 (820)
+.. ++|+ ...|...+...... ++. +.+..+|++.+... +.+...|..++..+.+
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 110 1222 13344433322221 121 35566666665543 4456666666666654
Q ss_pred -cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 003433 452 -QGKYD-------EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADV-VLYSALIDALCKN 522 (820)
Q Consensus 452 -~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~ 522 (820)
.|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++.... +. ..|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHh
Confidence 56665 67777777765212335666777777777777777777777777764321 22 4677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVVTYNSIIDA-FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQI 601 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (820)
|++++|.++|++.++... .+...|...+.. +...|+.++|+.+++++++..|+.. ..|...
T Consensus 370 ~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~-----------------~~~~~~ 431 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP-----------------EYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH-----------------HHHHHH
T ss_pred cCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH-----------------HHHHHH
Confidence 777777777777776421 122233222222 2346777777777777777655432 111222
Q ss_pred HHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 003433 602 IKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPN--VVTFSAILNACSRCNSFEDASMLLEELRLFDNQ 677 (820)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~-~~Pd--~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~ 677 (820)
++++. ..|+.++|..+|++.+..+ ..|+ ...|...+......|+.+++.+++..+.+..|+
T Consensus 432 ~~~~~---------------~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 432 IDYLS---------------HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHT---------------TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHH---------------hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22211 1124555666666666542 2332 335666666666778888887777777755553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-18 Score=181.50 Aligned_cols=308 Identities=13% Similarity=0.055 Sum_probs=169.1
Q ss_pred cCChhHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 241 SGYCQEAIS-VFNSMKRYNLK-P--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 241 ~g~~~~A~~-~~~~m~~~~~~-p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
.|++++|++ .|++..+.... | +...+..+...+.+.| ++++|+..|+++++.... +..++..+..++...|+++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 355555555 55544332111 1 2334455555555666 666666666666654322 4555556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
+|+..|+++.+.. +.+..++..+...|...|++++|++.|+++...... +...+..+... ... .
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-------~ 179 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-------A 179 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC-----------------------
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-------h
Confidence 6666666665543 234556666666666666666666666666554321 11111111000 000 0
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 397 FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL 474 (820)
Q Consensus 397 ~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 474 (820)
.+ ...+..+...+ ..|++++|+..|+++.+.. +. +..++..+...|.+.|++++|...|++++... +.+.
T Consensus 180 ----~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 180 ----GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 00111222222 6666667776666665543 22 46666667777777777777777777666542 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP----------NV 544 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~ 544 (820)
.++..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++|...|+++++..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 6677777777777777777777777766543 256677777777777777777777777776531110 14
Q ss_pred HHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 545 VTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 545 ~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+|..+..++.+.|+.++|..++.++++...
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 6777777788888888887777776666544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-18 Score=181.36 Aligned_cols=306 Identities=13% Similarity=-0.032 Sum_probs=163.0
Q ss_pred HcCCCHHHHHH-HHHHHHHcccccCC-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003433 167 GNRGEWSKAIQ-CFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC 244 (820)
Q Consensus 167 ~~~g~~~~A~~-~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 244 (820)
...|++++|++ .|+.++......+. ....+..++..+.+.|++++|...|+++++..+ .+..+|..++.+|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCH
Confidence 34567777777 77766654322211 133456777778888888888888888877643 3677777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 003433 245 QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNE 324 (820)
Q Consensus 245 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 324 (820)
++|+..|+++.+.... +..++..+...+...| ++++|+..|++++..... +...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKPD-NQTALMALAVSFTNES-LQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 8888888887765432 6677777777777777 788888888877775322 11111111000 00
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP-NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD 403 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d 403 (820)
.. . ....+..+...+ ..|++++|+..|+++.+..... +..++..+...|.+.|++++|+..|+++.+.. +.+
T Consensus 178 ~~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 GA----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hh----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 00 0 000111122222 4555555555555554432111 24455555555555555555555555555442 334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----------CC
Q 003433 404 RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS----------PN 473 (820)
Q Consensus 404 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------p~ 473 (820)
..++..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+.... ..
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 4555555555555555555555555555443 334555555555566666666666655555442100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 474 LLTYSTLIDVYSKGGLYKEAMQIFR 498 (820)
Q Consensus 474 ~~~~~~li~~~~~~g~~~~A~~~~~ 498 (820)
..+|..+..+|...|+.++|..+++
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4556666666666666666655554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-16 Score=177.46 Aligned_cols=388 Identities=10% Similarity=-0.057 Sum_probs=230.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-----
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRY-----N--LKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN----- 293 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~----- 293 (820)
.+..||.|...+...|++++|++.|++..+. + ..| ..++|+.+...|...| ++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcc
Confidence 4667888999999999999999999887542 1 122 4677888888888888 888888888877642
Q ss_pred C-CC-CCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHchhCCCC
Q 003433 294 G-VQ-PDRITFNSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI---CKGAQMDLAFEIMAEMPAKNIS 366 (820)
Q Consensus 294 g-~~-p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~---~~~g~~~~A~~~~~~m~~~g~~ 366 (820)
+ .. ....++..+..++.. .+++++|+..|++.++.. +.+...+..+..++ ...++.++|++.|++..+....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 11 134556655555544 456888888888887764 23455555555543 3456677788888777765322
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 367 PNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 367 p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
+..++..+...+.. .|++++|.+++++..... +.+..++..+...|.+.|++++|+..+++..+.. +.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 45555555544443 456777888888777654 4566777778888888888888888888777654 4556667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN 522 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 522 (820)
..+..+|...+....+... ..........+..++|...|++..+.+.. +..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRE----------------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHH----------------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence 6666665432111110000 00111111223467888888888776543 566788888999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchH
Q 003433 523 GLVESAVSLLDEMTKEGIRPNVV--TYNSIID-AFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDN 599 (820)
Q Consensus 523 g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (820)
|++++|+..|++.++....+... .+..+.. ...+.|+.++|+..++++++..++.... .
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~------------------~ 409 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK------------------E 409 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH------------------H
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH------------------H
Confidence 99999999999998754332221 2233332 2346778888888888877765543100 0
Q ss_pred HHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch
Q 003433 600 QIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV 678 (820)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~ 678 (820)
. ....+..++++.+. ..| +..+|..|+.+|...|++++|++.|+++++.++..
T Consensus 410 ~------------------------~~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 410 K------------------------MKDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp H------------------------HHHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred H------------------------HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 0 11123334444444 234 45667778888888888888888887777665554
Q ss_pred hH
Q 003433 679 YG 680 (820)
Q Consensus 679 ~~ 680 (820)
..
T Consensus 464 p~ 465 (472)
T 4g1t_A 464 PS 465 (472)
T ss_dssp --
T ss_pred Cc
Confidence 33
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-17 Score=170.36 Aligned_cols=268 Identities=8% Similarity=-0.013 Sum_probs=176.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..+...+...|++++|..+|+++.+.. +.+..++..+...+.+.|++++|++.|+++.+... .+..++..+...|...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHc
Confidence 334444445555555555555554432 22344445555555555555555555555544321 1344555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLGIGLDRVSYNT-------------V-LS-IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~~~~d~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
|++++|++.++++.+.. +.+...+.. + .. .+...|++++|...++++.+.. +.+..++..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555555432 111111111 1 22 3667788888888888887665 457788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.|.+.|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+... .+...|..+...|.+.|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887753 44677888888888899999999999988887653 367888888899999999999
Q ss_pred HHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRPN-------------VVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|.+.|+++.+. .|+ ..+|..+..++.+.|+.++|...++++++..++..
T Consensus 259 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 259 AAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 99999988764 333 56888888899999999999888877777666543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=176.64 Aligned_cols=265 Identities=10% Similarity=-0.032 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGY 379 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 379 (820)
..+..+...+.+.|++++|+.+|+++++.. +.+..++..+...|.+.|++++|+..|+++.+.... +..+|..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345556666666667777777776666653 335666666777777777777777777766654322 466677777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 003433 380 AKAGRLDDALNMFSEMKFLGIGLD-----------RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRK--DAVTYNALL 446 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~d-----------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li 446 (820)
...|++++|+..|+++.+.. |+ ...+..+...|.+.|++++|+..|+++.+.. +. +..++..+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 77777777777777766542 21 2233455778888888899999888887765 33 678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
..|.+.|++++|...|+++++.. +.+..+|..+..+|.+.|++++|+..|+++.+..+. +..+|..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHH
Confidence 88999999999999998887763 456788888999999999999999999998886543 6888888999999999999
Q ss_pred HHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHhhcCchhhhHHhHHHHh
Q 003433 527 SAVSLLDEMTKEGI---R--------PNVVTYNSIIDAFGRSATTECTVDDVERDL 571 (820)
Q Consensus 527 ~A~~~~~~m~~~g~---~--------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l 571 (820)
+|...|+++++... . .+..+|..+..++...|+.+.+.....+.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 99999999876310 0 025678888899999999888876655433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-17 Score=173.63 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=148.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++..+ .+..+|..++.+
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 46666666666777777777777666653 33445666666667777777777777776666532 256666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWE 316 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 316 (820)
|...|++++|+..|+++.+.. |+.. .+..+ ......+..+...+...|+++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~--------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNK--------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC---------------------------------------------CCHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhh--------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 666677776666666665521 1110 00000 001122333445555555566
Q ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
+|+.+|+++.+.... .+..++..+...|.+.|++++|++.|+++.+.... +..+|..+..+|.+.|++++|+..|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666555554311 14555556666666666666666666665554322 4556666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 396 KFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-----------RKDAVTYNALLGGYGKQGKYDEVRRMFEQ 464 (820)
Q Consensus 396 ~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 464 (820)
.+.. +.+..++..+..+|.+.|++++|...|+++.+... ..+..+|..+..++...|+.+.+..+..+
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5542 33455566666666666666666666665543210 01245666666677777777666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=165.01 Aligned_cols=278 Identities=9% Similarity=-0.038 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
.+..++..+...|++++|+.+|+++.+.... +...|..+...+...| ++++|.+.|+++++.... +..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENE-KDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 4455566666666666666666666553322 4555556666666666 666666666666554222 455555555566
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTM-ID-GYAKAGRLDD 387 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~-~~~~~g~~~~ 387 (820)
...|++++|...++++.+.... +...+..++.. .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554211 11111111000 0011111112 22 3667788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKA 467 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 467 (820)
|++.++++.+.. +.+...+..+...|.+.|++++|+..++++.+.. +.+..+|..+...|...|++++|...|+++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888887764 4467788888888888899999998888887665 55678888888999999999999999998877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 468 DCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA-----------DVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 468 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.. +.+..++..+...|.+.|++++|.+.|+++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 4467788889999999999999999999887754321 46788889999999999999999887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=167.50 Aligned_cols=283 Identities=15% Similarity=0.195 Sum_probs=132.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHH
Q 003433 203 LGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKH 282 (820)
Q Consensus 203 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~ 282 (820)
+-+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...| ++++
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g-~~Ee 79 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCC-CHHH
Confidence 346788999999999882 2358999999999999999999999764 47778999999999999 8999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
|+.+++..++. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977777664 4467788889999999999999888874 267779999999999999999999999977
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 363 KNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTY 442 (820)
Q Consensus 363 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 442 (820)
..|..|+.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|......+ ..++.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 36899999999999999999999988 27889999999999999999996655432 3444555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--GLYKEAMQIFREFKQAGLKA------DVVLYSA 514 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~ 514 (820)
..++..|.+.|++++|..+++..+... +-....|+.|...|++- +++.+.++.|..- .++++ +...|..
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e 287 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 287 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHH
Confidence 678899999999999999999987654 55677888888888754 4566666665432 11211 4556888
Q ss_pred HHHHHHHcCCHHHHHH
Q 003433 515 LIDALCKNGLVESAVS 530 (820)
Q Consensus 515 li~~~~~~g~~~~A~~ 530 (820)
++-.|.+.++++.|..
T Consensus 288 ~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 288 LVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHhhchHHHHHH
Confidence 8888999999998876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-17 Score=169.86 Aligned_cols=283 Identities=12% Similarity=0.180 Sum_probs=134.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 003433 240 RSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAAR 319 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 319 (820)
+.|++++|.++++++.. ..+|..|+.++.+.| ++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 67889999999999943 359999999999999 999999999763 47779999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 320 NLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 320 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
.+++...+. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 45678899999999999999999988852 67789999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 400 IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 400 ~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
..|..|++++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .+..-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence 36899999999999999999999988 378999999999999999999976655432 34444557
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKN--GLVESAVSLLDEMTKEGIRP------NVVTYNSII 551 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~ll 551 (820)
++..|.+.|++++|..+++..+... .-....|+-|.-+|++- +++.+.++.|..-+ ++.| +...|..+.
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998655 34677888887777764 34555555554221 2222 334677788
Q ss_pred HHHhhcCchhhhHHhH
Q 003433 552 DAFGRSATTECTVDDV 567 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~ 567 (820)
-.|.+.++++.|+..+
T Consensus 290 ~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 290 FLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhhchHHHHHHHH
Confidence 8888888888877643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-15 Score=155.85 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 003433 268 AVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDIFTYNTLLDAICK 346 (820)
Q Consensus 268 ~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~ 346 (820)
.+..+|...| +++.|+..++.. -.|+..++..+...+...|+.++|++.++++...+. +.+...+..+...|.+
T Consensus 39 ~l~r~yi~~g-~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 39 FLYRAYLAQR-KYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHTT-CHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 3344444444 444444433221 123344444444455555555555555555544432 2234444444455555
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSY---NTVLSIYAKLGRFEEA 423 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~---~~li~~~~~~g~~~~A 423 (820)
.|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|
T Consensus 114 ~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA 185 (291)
T 3mkr_A 114 DQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDA 185 (291)
T ss_dssp TTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred CCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHH
Confidence 5555555555554 1244455555555555555555555555555442 222111 1112222233555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 003433 424 LLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE-AMQIFREFKQ 502 (820)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 502 (820)
..+|+++.+.. +.+...|+.+..++.+.|++++|...|+++++.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 186 ~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 186 YYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55555555442 4455555555555555555555555555555432 2344555555555555555543 3455555554
Q ss_pred C
Q 003433 503 A 503 (820)
Q Consensus 503 ~ 503 (820)
.
T Consensus 264 ~ 264 (291)
T 3mkr_A 264 A 264 (291)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-15 Score=157.23 Aligned_cols=250 Identities=16% Similarity=0.088 Sum_probs=123.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHH
Q 003433 204 GRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHV 283 (820)
Q Consensus 204 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A 283 (820)
...|++..|+..++......+.........+.++|...|++++|+..++.. -.|+..++..+...+...+ +.++|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~-~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS-RRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST-THHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC-cHHHH
Confidence 344455555544444322211111123333444555555555555444321 1234444444445555555 55555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 284 VEIFDDMLRNGVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 284 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
++.+++++..+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|++.|+++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555443322 233344444555555555555555544 23455555555555555555555555555554
Q ss_pred CCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 363 KNISPNVVTY---STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (820)
Q Consensus 363 ~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 439 (820)
.. |+.... ..++..+...|++++|+.+|+++.+.. +.+...++.+..++.+.|++++|...|+++++.. +.+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 42 222111 112222333456666666666665552 4455566666666666666666666666655544 4455
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 003433 440 VTYNALLGGYGKQGKYDE-VRRMFEQMKAD 468 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 468 (820)
.++..++..+...|+.++ +.++++++.+.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 566666666666666544 44566665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=184.34 Aligned_cols=152 Identities=14% Similarity=0.225 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEME---SSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
-..||++||++||+.|++++|.++|++|. ..|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45789999999999999999999998775 347889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 003433 480 LIDVYSKGGL-YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN------VVTYNSIID 552 (820)
Q Consensus 480 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~ 552 (820)
||.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 478889999999999999999999888766654 344444444 2345544 335556666
Q ss_pred HHhhcCc
Q 003433 553 AFGRSAT 559 (820)
Q Consensus 553 ~~~~~g~ 559 (820)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7766653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-17 Score=182.32 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKF---LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNA 444 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 444 (820)
-..||++||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 003433 445 LLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD------VVLYSALID 517 (820)
Q Consensus 445 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 517 (820)
||.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+ .++..+++ ..++.|+ +.+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999998 5789999999999999999999999997766543 33333333 3344443 344455566
Q ss_pred HHHHcC
Q 003433 518 ALCKNG 523 (820)
Q Consensus 518 ~~~~~g 523 (820)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-14 Score=143.35 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC--CC----HHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS--PN----VVTYS 373 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~~~~ 373 (820)
..+..+...+...|++++|+.+|+++++.. .+..++..+...|...|++++|++.|++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666654 45566666666666666666666666665543211 11 35666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
.+...|...|++++|+..|+++.+. .++. ..+.+.|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 6667777777777777777776664 2332 34555566777777777766543 334556666777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 454 KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 454 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...|..+...|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777766643 345666777777777777777777777777665432 56667777777777777777777777
Q ss_pred HHHH
Q 003433 534 EMTK 537 (820)
Q Consensus 534 ~m~~ 537 (820)
++.+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-14 Score=159.11 Aligned_cols=371 Identities=12% Similarity=0.044 Sum_probs=248.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+...+.+.|++++|++.|+.+...+ .+ .++..++.+|...|+. ++|...|+++.+. +..++..|...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g--~~---~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG--YS---EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--CC---TGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CH---HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 5666788899999999999998764 22 2455677778888888 9999999999864 566777888866
Q ss_pred HhcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 239 GRSG-----YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDF---KHVVEIFDDMLRNGVQPDRITFNSLLAVCS 310 (820)
Q Consensus 239 ~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 310 (820)
...| ++++|+.+|++..+.|.. ..+..|...|...+ .. .++.+.+......| +......|...|.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYR 152 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 6665 778999999999986643 25666777776554 32 34566666665544 3456667777787
Q ss_pred hCCCHH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc-
Q 003433 311 RGGLWE----AARNLFNEMVHRGIDQDIFTYNTLLDAICKGA---QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA- 382 (820)
Q Consensus 311 ~~g~~~----~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 382 (820)
..+.++ .+..++..... .+...+..|..+|.+.| +.++|++.|++..+.|.. +...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG
T ss_pred cCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC
Confidence 777544 44444444433 23448888999999999 999999999999988743 566667777777655
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---
Q 003433 383 ---GRLDDALNMFSEMKFLGIGLDRVSYNTVLSI-Y--AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG--- 453 (820)
Q Consensus 383 ---g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 453 (820)
+++++|+++|++.. .| +...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 79999999999987 33 55667777766 4 46899999999999998866 6788888888887 55
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cC
Q 003433 454 --KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NG 523 (820)
Q Consensus 454 --~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 523 (820)
++++|...|++.. . -+...+..|..+|.. ..++++|...|++..+.| +...+..|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 9999999999887 4 377888888888877 348999999999999876 34456667777764 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 524 LVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 524 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+.++|...|++..+.|.. +.......+......++.++|....++
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999987632 332222222222333455555554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-14 Score=141.41 Aligned_cols=230 Identities=13% Similarity=0.090 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 003433 228 VYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ--PDRITFNSL 305 (820)
Q Consensus 228 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~--p~~~~~~~l 305 (820)
...|..+...+...|++++|+.+|+++.+.. .+...|..+...+...| ++++|+..++++++.... ++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~----- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchH-----
Confidence 3445555555555555555555555555443 34555555555555555 555555555555442111 0100
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 385 (820)
....++..+...|.+.|++++|++.|+++.+.. |+ ...+.+.|++
T Consensus 77 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~ 121 (258)
T 3uq3_A 77 --------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNA 121 (258)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHH
Confidence 002444444445555555555555555444431 22 1234444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 386 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
++|+..++++.... +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|...|+++
T Consensus 122 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 122 EKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55666655555542 2233455555666666666666666666665543 345566666666666666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 466 KADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 466 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
++.. +.+...|..+...|.+.|++++|...|++..+.
T Consensus 200 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 200 IEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5542 334556666666666666666666666666543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-14 Score=139.09 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|++++|+..|++.++.. +-+...+..+..+|...|++++|+..|++.++.+ .+...+..+..+|...|++++|+..|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444331 1223344444444444444444444444444433 24444444444444444444444444
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHH
Q 003433 533 DEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVER 569 (820)
Q Consensus 533 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 569 (820)
+++++. .| +...+..+..++.+.|++++|+..+++
T Consensus 175 ~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444432 12 223444444444444444444444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=146.92 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 405 VSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK-YDEVRRMFEQMKADCVSPNLLTYSTLIDV 483 (820)
Q Consensus 405 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 483 (820)
..|..+...+.+.|++++|+..++++++.. +.+..+|+.+..++.+.|+ +++|+..|+++++.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456667777777888888888888877665 5567788888888888886 888888888887753 4467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cCchhh
Q 003433 484 YSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR-SATTEC 562 (820)
Q Consensus 484 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~ 562 (820)
|...|++++|+..|+++++.+.. +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.+ .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 88888888888888888887654 7788888888888888888888888888875322 55678888877777 454455
Q ss_pred hHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC
Q 003433 563 TVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK 642 (820)
Q Consensus 563 a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~ 642 (820)
|+. +++++.|++.+. +.
T Consensus 254 A~~-------------------------------------------------------------~~el~~~~~Al~--l~ 270 (382)
T 2h6f_A 254 AVL-------------------------------------------------------------EREVQYTLEMIK--LV 270 (382)
T ss_dssp HHH-------------------------------------------------------------HHHHHHHHHHHH--HS
T ss_pred HHH-------------------------------------------------------------HHHHHHHHHHHH--HC
Confidence 531 123455666655 45
Q ss_pred CC-HHHHHHHHHHHhccC--CHHHHHHHHHHHhhcCCchhHHHHHHHhccc-c--------c-hHHHHHHHHHHH-hhcC
Q 003433 643 PN-VVTFSAILNACSRCN--SFEDASMLLEELRLFDNQVYGVAHGLLMGYR-D--------N-IWVQALSLFDEV-KLMD 708 (820)
Q Consensus 643 Pd-~~~~~~ll~a~~~~g--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~~A~~~~~~~-~~~~ 708 (820)
|+ ...|..+..++.+.| ++++|.+.+.++ +.+|....++..+...+. . + .+++|+.+++++ ++++
T Consensus 271 P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 271 PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 64 556778888888877 578888888777 667766665555543332 2 2 358889999998 8888
Q ss_pred CCcchhHHHHHHHHHhh
Q 003433 709 SSTASAFYNALTDMLWH 725 (820)
Q Consensus 709 ~~~~~~~~~~l~~~~~~ 725 (820)
|.. ..+|..++..+..
T Consensus 350 P~r-~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 TIR-KEYWRYIGRSLQS 365 (382)
T ss_dssp GGG-HHHHHHHHHHHHH
T ss_pred chh-HHHHHHHHHHHHH
Confidence 854 6678777776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=146.47 Aligned_cols=249 Identities=12% Similarity=0.084 Sum_probs=201.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
.+.|..+...+...|++++|++.|++++..+ |.+..+|..++.++...|+ +++|+..|++++...+. +..+|+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN---AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 4567778888999999999999999999885 5667789999999999997 99999999999998654 78999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-GG 313 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g 313 (820)
..++.+.|++++|+..|+++++.... +...|..+..++.+.| ++++|+..|+++++.... +...|+.+..++.. .|
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g-~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFK-LWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHT-CCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986544 7889999999999999 999999999999987554 78889999999988 66
Q ss_pred CHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---
Q 003433 314 LWEAA-----RNLFNEMVHRGIDQDIFTYNTLLDAICKGA--QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG--- 383 (820)
Q Consensus 314 ~~~~A-----~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 383 (820)
..++| +..|++.++.. +.+...|+.+..++.+.| ++++|++.+.++ +.. ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 65777 58888888764 346788888888888887 688888888887 432 336677888888888864
Q ss_pred ------CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHH
Q 003433 384 ------RLDDALNMFSEM-KFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 384 ------~~~~A~~~~~~m-~~~~~~~d~~~~~~li~~~~ 415 (820)
.+++|+++|+++ .+.+ +.....|..+...+.
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 258888888888 5553 333455555555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-14 Score=153.61 Aligned_cols=345 Identities=11% Similarity=0.028 Sum_probs=243.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003433 198 AMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYC---QEAISVFNSMKRYNLKPNLVTYNAVIDACG 274 (820)
Q Consensus 198 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 274 (820)
.+...+.+.|++++|.++|+++.+.| +..++..|..+|...|+. ++|+.+|++..+. +...+..|...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46777889999999999999998875 445677788888888988 9999999999863 5555666666444
Q ss_pred cCC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 275 KGG----VDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW---EAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (820)
Q Consensus 275 ~~g----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 347 (820)
..+ .++++|+.+|++..+.|.. ..+..|...|...+.. .++.+.+......| +...+..|...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 433 2678999999999997644 2666777777766543 34555565555555 455677788888888
Q ss_pred CCHHH----HHHHHHHchhCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---
Q 003433 348 AQMDL----AFEIMAEMPAKNISPNVVTYSTMIDGYAKAG---RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL--- 417 (820)
Q Consensus 348 g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~--- 417 (820)
+.+++ +..+++..... +...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGS
T ss_pred CCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCC
Confidence 85544 44455554443 4448889999999999 9999999999999988 66777667788887655
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----
Q 003433 418 -GRFEEALLVCKEMESSGIRKDAVTYNALLGG-Y--GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG----- 488 (820)
Q Consensus 418 -g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 488 (820)
+++++|+..|++.. . -+...+..|... | ...+++++|...|++..+.| +...+..|..+|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~ 301 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPA 301 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCC
Confidence 79999999999987 3 456777777777 4 56899999999999999876 7888888998888 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----cCch
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR----SATT 560 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 560 (820)
++++|++.|++.. . -+...+..|...|.. ..++++|...|++..+.| +......|..+|.. ..+.
T Consensus 302 d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 302 DAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCH
T ss_pred CHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCH
Confidence 9999999999988 4 377888888888776 348999999999999876 34455566666643 4578
Q ss_pred hhhHHhHHHHhhhhh
Q 003433 561 ECTVDDVERDLGKQK 575 (820)
Q Consensus 561 ~~a~~~~~~~l~~~~ 575 (820)
++|...++++.+...
T Consensus 375 ~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 375 LNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 889888888776554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=131.51 Aligned_cols=227 Identities=10% Similarity=-0.019 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~ 408 (820)
+..++..+...|.+.|++++|++.|++..+.+ +..++..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455555555556666666666666555532 44555555566666 666666666666665553 455556
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 409 TVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 409 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.+ .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666666666666666543 55566666666666 666666666666666653 45556666
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 481 IDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 481 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 667777777777766653 45666666667777 777777777777776653 2556666666
Q ss_pred HHhh----cCchhhhHHhHHHHhhhhhhh
Q 003433 553 AFGR----SATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 553 ~~~~----~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+|.+ .++.++|+..++++++..+..
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 6666 677777777777777665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-13 Score=134.74 Aligned_cols=201 Identities=19% Similarity=0.083 Sum_probs=167.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 331 DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTV 410 (820)
Q Consensus 331 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~l 410 (820)
+++...+..+...+.+.|++++|+..|++..+.... +...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456778899999999999999999999999987544 78899999999999999999999999999875 5577889999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 411 LSIYAKL-----------GRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 411 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
...|.+. |++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 5678899999999999999999999999999876 78899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 480 LIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 480 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+..+|...|++++|+..|+++++..+. +...+..+...+.+.|++++|+..|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999987654 788999999999999999999999987643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-12 Score=131.11 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCCCHHHHH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYS 373 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 373 (820)
+..++..+...+...|++++|+..|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666677777777777777777777763 355667777777777 777777777777777664 667777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 374 TMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNAL 445 (820)
Q Consensus 374 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 445 (820)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 778888888887777764 56777777777777 788888888888777754 56667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 446 LGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 446 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 788888888888877764 56777778888887 888888888888887764 3667777778
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCC
Q 003433 518 ALCK----NGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 518 ~~~~----~g~~~~A~~~~~~m~~~g 539 (820)
.|.+ .+++++|++.|++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8877 788888888888887754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-11 Score=134.54 Aligned_cols=430 Identities=10% Similarity=0.038 Sum_probs=305.5
Q ss_pred hHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC---hHHHHHHHH
Q 003433 141 SLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK---VDLAKNIFE 217 (820)
Q Consensus 141 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 217 (820)
.+..+-+.+..++.+.+.|..++..+.+.+.++.+..+|++++.. .|....+|..-+..-.+.|+ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~---fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR---FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 344455556667778999999999999999999999999999988 45556788888999899999 999999999
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHc---------C
Q 003433 218 TALNEGY-GNTVYAFSALISAYGRSGYC--------QEAISVFNSMKR-YNL-KP-NLVTYNAVIDACGK---------G 276 (820)
Q Consensus 218 ~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p-~~~~~~~ll~~~~~---------~ 276 (820)
+.+...+ .+++..|...+....+.++. +...++|+.... .|. .+ +...|...+..... .
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 9998631 37899999988877666654 334578887663 465 55 45688877765432 2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHC--CCC----------
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSR-------------GGLWEAARNLFNEMVHR--GID---------- 331 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~--g~~---------- 331 (820)
+ +.+.+..+|++++......-..+|......-.. ..+++.|...+.++... ++.
T Consensus 208 ~-~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 208 Q-RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp H-HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred h-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3 467889999999863222112333222111101 12344455555554321 211
Q ss_pred -----C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH-H
Q 003433 332 -----Q-----D---IFTYNTLLDAICKGA-------QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL-N 390 (820)
Q Consensus 332 -----~-----~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~ 390 (820)
| + ...|...+..--..+ ..+.+..+|++++.... -+...|...+..+.+.|+.++|. +
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 1 245666665543332 12345677888877533 37788888888899999999997 9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---------CC------------CHHHHHHHHHHH
Q 003433 391 MFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI---------RK------------DAVTYNALLGGY 449 (820)
Q Consensus 391 ~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~------------~~~~~~~li~~~ 449 (820)
+|++.... ++.+...|...+....+.|++++|.++|+++++... .| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 355666788888999999999999999999875310 13 234688888888
Q ss_pred HhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 450 GKQGKYDEVRRMFEQMKAD-CVSPNLLTYSTLIDVYSKG-GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+.|..+.|+.+|.+.++. + ......|...+..-.+. ++.+.|.++|+..++.- .-+...|...+......|+.+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHH
Confidence 8899999999999999876 2 11233343333333444 45899999999998863 3477788899998999999999
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRP--NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|..+|++.+.....+ ....|...+.--.+.|+.+.+..+.+++.+..|+..
T Consensus 523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999863322 234788888888899999999999999999888753
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-13 Score=137.43 Aligned_cols=237 Identities=11% Similarity=0.027 Sum_probs=131.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 003433 338 NTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGL--DRVSYNTVLSIYA 415 (820)
Q Consensus 338 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--d~~~~~~li~~~~ 415 (820)
..+...+.+.|++++|+..|+++.+.... +...+..+..+|...|++++|++.++++.+....+ ....|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445555555555555555555544321 33355555555556666666666665555522111 1223555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
..|++++|+..|++..+.. +.+..+|..+...|...|++++|...|++.++. .+.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 334556666666666666666666666666554 23345555555522223346666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHhhcCchhhhHH
Q 003433 496 IFREFKQAGLKADVVLYSALIDALCKNGL---VESAVSLLDEMTKEG-IRPN------VVTYNSIIDAFGRSATTECTVD 565 (820)
Q Consensus 496 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~~~a~~ 565 (820)
.|+++.+.... +...+..+...+...|+ +++|...|+++.+.. -.|+ ..+|..+...|.+.|++++|+.
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666665432 45566666666666666 666666666665431 1122 1355666666667777777777
Q ss_pred hHHHHhhhhhhhh
Q 003433 566 DVERDLGKQKESA 578 (820)
Q Consensus 566 ~~~~~l~~~~~~~ 578 (820)
.++++++..|++.
T Consensus 243 ~~~~al~~~p~~~ 255 (272)
T 3u4t_A 243 AWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHCTTCH
T ss_pred HHHHHHhcCccHH
Confidence 7777777666553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-13 Score=136.21 Aligned_cols=236 Identities=14% Similarity=0.061 Sum_probs=157.9
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 233 (820)
++.+......+...|++++|++.|+.+++.. +.+..++..++.++...|++++|+..|++++..... ....+|..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 4556667777888888888888888888774 333446777888888888888888888888773211 12445778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG 313 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 313 (820)
+...|...|++++|++.|++..+.... +...|..+...+...| ++++|+..|++.++... .+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKG-NFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTT-CHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHH
Confidence 888888888888888888888764332 5567777777888888 78888888887776532 25566666663344445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHchhCC-CCCC------HHHHHHHHHHHHHcC
Q 003433 314 LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQ---MDLAFEIMAEMPAKN-ISPN------VVTYSTMIDGYAKAG 383 (820)
Q Consensus 314 ~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g 383 (820)
++++|...|+++++.. +.+...+..+...+...|+ +++|+..|++..+.. -.|+ ..+|..+...|.+.|
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcC
Confidence 7888888887777753 3346666667777777666 666666666655421 0012 134555666666666
Q ss_pred CHHHHHHHHHHHHHC
Q 003433 384 RLDDALNMFSEMKFL 398 (820)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (820)
++++|++.|+++.+.
T Consensus 236 ~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 236 DKVKADAAWKNILAL 250 (272)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 666666666666655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=132.13 Aligned_cols=198 Identities=13% Similarity=-0.016 Sum_probs=101.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 344444455555555555555555444321 134445555555555555555555555554442 234445555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 416 KLGRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
..|++++|++.++++.+.+..| +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555554411112 34445555555555555555555555554432 223455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 495 QIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 495 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
..|+++.+... .+...+..+...+.+.|++++|.++++++.+
T Consensus 196 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555554432 2445555555555555666666665555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=132.03 Aligned_cols=206 Identities=14% Similarity=0.021 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGG 448 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 448 (820)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...|...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888999999999999999999998874 5578889999999999999999999999998765 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 449 YGKQGKYDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 449 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
|...|++++|.++|+++...+..| +...+..+...|...|++++|.+.|+++.+.... +...+..++..|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733344 5678888999999999999999999999887643 68899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 528 AVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 528 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
|...|+++.+.. ..+...+..+...+.+.|+.++|...++++++..++..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999998753 34667888999999999999999999999998887764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=139.00 Aligned_cols=218 Identities=14% Similarity=0.000 Sum_probs=102.0
Q ss_pred CHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQ---PDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFE 355 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 355 (820)
++++|+..|+++++.... .+..++..+...+...|++++|...|+++++.. +.+..++..+...|...|++++|++
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 455555555555543211 123445555555555566666666665555542 2245555555555555555555555
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 356 IMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI 435 (820)
Q Consensus 356 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 435 (820)
.|+++.+.... +..++..+..+|.+.|++++|+..|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 99 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 55555543221 3445555555555555555555555555544 2222222223333344455555555554444332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS---PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
+++...+. ++..+...++.++|...++++...... .+..++..+...|.+.|++++|...|+++.+
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22222222 444444444555555555544332100 0023334444444444444444444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=139.33 Aligned_cols=248 Identities=10% Similarity=-0.068 Sum_probs=195.6
Q ss_pred HhCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD 386 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 386 (820)
...|++++|+..|+++.+... +.+..++..+...|...|++++|+..|+++.+.... +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 346889999999999998632 124678899999999999999999999999887533 6889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 387 DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 387 ~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
+|++.|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999874 4567889999999999999999999999998764 443344445556677799999999998877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003433 467 ADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 543 (820)
Q Consensus 467 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 543 (820)
... +++...+. ++..+...++.++|...++++.+..... +...|..++..|.+.|++++|...|+++++. .|+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 653 34444444 7777888889999999999886543211 2578889999999999999999999999985 453
Q ss_pred HHHHHHHHHHHhhcCchhhhHHhH
Q 003433 544 VVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 544 ~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 3 223355677888888887643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=126.22 Aligned_cols=201 Identities=10% Similarity=-0.023 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..++..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|++.++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 44555566666666666666666666555422 145555556666666666666666666655543 3344555555555
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 414 YAKL-GRFEEALLVCKEMESSGIRK-DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYK 491 (820)
Q Consensus 414 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 491 (820)
|... |++++|+..++++.+.+..+ +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666665555421112 24455555555555666666666665555432 223455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 492 EAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 492 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 5555555555443212444455555555555555555555555543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-13 Score=133.71 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
...|..+...+.+.|++++|+..|+++.+.... +...+..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555555666666666666666666554322 45566666666666666666666666665543 3355566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|...|++++|+..++++.+.. +.+...+..+...|.+.|++++|..+++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665544 3455666666666667777777777776666542 33556666666777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
...|+++.+... .+..+|..+...|.+.|++++|...|+++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777666543 25666667777777777777777777777663
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=126.93 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|++.|+++.+.... +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 4445555556666666666666666665542 234555566666666666666666666665554321 45555566666
Q ss_pred HHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003433 379 YAKA-GRLDDALNMFSEMKFLGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYD 456 (820)
Q Consensus 379 ~~~~-g~~~~A~~~~~~m~~~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 456 (820)
|... |++++|+..++++.+.+..|+ ...+..+...|...|++++|+..++++.+.. +.+...+..+...|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 666666666666655211222 3455555566666666666666666655443 334555566666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 457 EVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 457 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+|..+++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666554421134555555555556666666666666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-13 Score=133.20 Aligned_cols=209 Identities=13% Similarity=0.115 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDG 378 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 378 (820)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...|.+.|++++|++.|+++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 3445555555566666666666666665542 234555666666666666666666666665554322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 379 YAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEV 458 (820)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 458 (820)
|...|++++|++.++++.+.. +.+...+..+...|.+.|++++|+..++++.+.. +.+...+..+...|.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666553 3455566666666666677777776666665543 34566666666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 459 RRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYS 513 (820)
Q Consensus 459 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 513 (820)
...|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.... +...+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 231 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALH 231 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHH
Confidence 77777666542 334566666777777777777777777777665432 344443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-13 Score=145.38 Aligned_cols=276 Identities=14% Similarity=0.069 Sum_probs=148.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGIGLDR----VSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYNALL 446 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li 446 (820)
...+...|++++|+..|+++.+.. +.+. ..+..+...|...|++++|+..+++..+. +. .....++..+.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 334444444444444444444432 1111 23444444444444444444444443321 00 11223444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC-
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADC-----VSPNLLTYSTLIDVYSKGGL-----------------YKEAMQIFREFKQA- 503 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~- 503 (820)
..|...|++++|...|++..+.. ......++..+...|...|+ +++|.+.+++..+.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55555555555555555543320 01123345555666666666 66666666554331
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhhcCchhhhHHhHHHHhhhh
Q 003433 504 ---GL-KADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPN----VVTYNSIIDAFGRSATTECTVDDVERDLGKQ 574 (820)
Q Consensus 504 ---~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~ 574 (820)
+. .....++..+...|...|++++|+..|++.++... ..+ ..++..+..++...|++++|+..+++++...
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 10 11234566677777777777777777777664210 011 1256666667777777777766554444322
Q ss_pred hhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 003433 575 KESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIK-PNVVTFSAILN 653 (820)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~-Pd~~~~~~ll~ 653 (820)
+.. +.. ....++..++.
T Consensus 294 ~~~--------------------------------------------------------------~~~~~~~~~~~~la~ 311 (411)
T 4a1s_A 294 VEL--------------------------------------------------------------GEREVEAQSCYSLGN 311 (411)
T ss_dssp HHT--------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHc--------------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 211 000 02345677888
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHH
Q 003433 654 ACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 654 a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
+|...|++++|.++|++++...+... ++......+..++.+|.+.|++++|.
T Consensus 312 ~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 312 TYTLLHEFNTAIEYHNRHLAIAQELG----------------------------DRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC----------------------------ChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 88899999999998888763211100 00011345888999999999999999
Q ss_pred HHHHHhhhh
Q 003433 734 LVVLEGKRR 742 (820)
Q Consensus 734 ~~~~~~~~~ 742 (820)
++++++.+.
T Consensus 364 ~~~~~al~~ 372 (411)
T 4a1s_A 364 KYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-13 Score=144.56 Aligned_cols=304 Identities=14% Similarity=0.119 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPN----LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
....+..+...+...|++++|+..|+++.+.+.. + ...|..+...+...| ++++|...+++++...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLA-------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH--------
Confidence 4455555666666666666666666666553221 2 234555555555555 5666666555544210
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC----HHHHHHHH
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN----VVTYSTMI 376 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li 376 (820)
...+.. ....++..+...|...|++++|+..+++..+.... .+ ..++..+.
T Consensus 78 -----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 78 -----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp -----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 000000 01233444444455555555555554444321000 01 23556666
Q ss_pred HHHHHcCC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 377 DGYAKAGR--------------------LDDALNMFSEMKFL----GIG-LDRVSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 377 ~~~~~~g~--------------------~~~A~~~~~~m~~~----~~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..|...|+ +++|++.+++.... +.. ....++..+...|...|++++|+..+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666 67777766665432 111 113456777778888888888888887765
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 432 SSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 432 ~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
+... .++ ..++..+...|...|++++|...+++...... ..+ ..++..+...|...|++++|...|++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 112 23677788888889999999888888764310 011 4577788889999999999999998876
Q ss_pred HCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCchhhh
Q 003433 502 QAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 502 ~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 563 (820)
+.... .+ ..++..+...|...|++++|...|++..+. +..+. ..++..+...+...|+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 53111 12 567788899999999999999999987653 22222 33677777788777776544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-10 Score=127.79 Aligned_cols=375 Identities=10% Similarity=0.022 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY---CQEAI 248 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 248 (820)
..+.+..|+..+..+ +.+...|..++..+.+.+.++.++.+|+.++.. ++.....|...+..-.+.|. ++.+.
T Consensus 48 ~~d~i~~lE~~l~~n---p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ---PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 344566777777774 556779999999999999999999999999987 56688999999999999999 99999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh-----
Q 003433 249 SVFNSMKRYN-LKPNLVTYNAVIDACGKGGVDF--------KHVVEIFDDMLR-NGV-QPD-RITFNSLLAVCSR----- 311 (820)
Q Consensus 249 ~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~--------~~A~~~~~~m~~-~g~-~p~-~~~~~~ll~~~~~----- 311 (820)
.+|++..... ..|++..|...+.-..+.+ +. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~-~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKN-DIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHS-CSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-ccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 9999999753 1378888888877655444 32 345578887764 455 443 4677777765432
Q ss_pred ----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 312 ----GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 312 ----~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
.++++.+..+|++++......-..+|......--..+. ..+.+++.+. ..+++.
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHH
Confidence 34577888899888863211112333322221111111 0111111110 112222
Q ss_pred HHHHHHHHHHC--CC----C-----------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCC
Q 003433 388 ALNMFSEMKFL--GI----G-----------L-----D---RVSYNTVLSIYAKLG-------RFEEALLVCKEMESSGI 435 (820)
Q Consensus 388 A~~~~~~m~~~--~~----~-----------~-----d---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~ 435 (820)
|...+.++... ++ + | + ...|...+..--..+ ..+....+|++.+..-
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~- 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV- 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence 33333322110 10 0 0 0 122333333222211 1233455666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 003433 436 RKDAVTYNALLGGYGKQGKYDEVR-RMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL--------- 505 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------- 505 (820)
+-+...|...+..+.+.|+.++|. .+|++.... ++.+...|...+....+.|++++|.++|+.+++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 456777777777777777777775 888777664 344555666777777777888888888877765310
Q ss_pred CC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhc-CchhhhHHhHHHHh
Q 003433 506 KA------------DVVLYSALIDALCKNGLVESAVSLLDEMTKE-GIRPNVVTYNSIIDAFGRS-ATTECTVDDVERDL 571 (820)
Q Consensus 506 ~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~l 571 (820)
.| ...+|...+....+.|..+.|..+|.++++. +. .....|...+..-.+. ++.+.|..++++++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12 1235777777777777788888888887765 21 1222333222222232 33666666666666
Q ss_pred hhhhh
Q 003433 572 GKQKE 576 (820)
Q Consensus 572 ~~~~~ 576 (820)
+..+.
T Consensus 498 k~~p~ 502 (679)
T 4e6h_A 498 KYFAT 502 (679)
T ss_dssp HHHTT
T ss_pred HHCCC
Confidence 65544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-13 Score=143.57 Aligned_cols=272 Identities=14% Similarity=0.069 Sum_probs=167.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhC----CC-CCCHHHHHH
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAK----NI-SPNVVTYST 374 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ 374 (820)
.+...+...|++++|+..|+++++.+. .+. .++..+...|...|++++|++.|++..+. +. .....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344445555555555555555555421 121 34555555555566666666555554331 00 112345555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL----G-IGLDRVSYNTVLSIYAKLGR-----------------FEEALLVCKEMES 432 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----~-~~~d~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~ 432 (820)
+...|...|++++|+..++++.+. + ......++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666665432 1 01123456666677777777 7777777666533
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 433 S----GI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCV-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 433 ~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
. +. .....++..+...|...|++++|...|++..+... ..+ ..++..+...|...|++++|...|++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 10 11234677777788888888888888887654310 012 23677788888888899988888888765
Q ss_pred CCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhh
Q 003433 503 AGLK-----ADVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLG 572 (820)
Q Consensus 503 ~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~ 572 (820)
.... ....++..+...|...|++++|...|+++++. +..+. ..++..+..+|.+.|++++|+..++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3210 11467778888899999999999999888753 11111 33777888888999999999999888887
Q ss_pred hhhh
Q 003433 573 KQKE 576 (820)
Q Consensus 573 ~~~~ 576 (820)
...+
T Consensus 372 ~~~~ 375 (411)
T 4a1s_A 372 LAXX 375 (411)
T ss_dssp HCCH
T ss_pred HHhh
Confidence 6544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=144.91 Aligned_cols=307 Identities=17% Similarity=0.093 Sum_probs=191.5
Q ss_pred ChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-C
Q 003433 191 DQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSALISAYGRSGYCQEAISVFNSMKRY----NLKP-N 262 (820)
Q Consensus 191 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 262 (820)
.....+...+..+...|++++|...|+++++.+.... ..++..+...|...|++++|+..|++.... +-.+ .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667889999999999999999999998754321 467889999999999999999999987642 1111 1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCC-------------HHHHHHHHHH
Q 003433 263 LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-PD----RITFNSLLAVCSRGGL-------------WEAARNLFNE 324 (820)
Q Consensus 263 ~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~-------------~~~A~~~~~~ 324 (820)
..++..+...+...| ++++|+..++++++.... .+ ..++..+...|...|+ .+++...
T Consensus 87 ~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 87 AKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 345566666666777 777777777766542100 01 2234444444555555 0000000
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003433 325 MVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 325 ~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 399 (820)
+++|++.+++.... +.. ....++..+...|...|++++|+..+++..+..
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444333211 000 012356666667777777777777776665321
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 400 I-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKD----AVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 400 ~-~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
. .++ ..++..+...|...|++++|...+++..+... ..+ ..++..+...|.+.|++++|...|++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 23667777778888888888888877653210 011 4567778888888889988888888875431
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHH
Q 003433 470 V-SPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GL-KADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 470 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~ 526 (820)
. ..+ ..++..+...|...|++++|.+.|++..+. +. .....++..+...+...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 0 112 457778888899999999999999887643 11 112445666666776666553
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-12 Score=136.35 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 713 SAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 713 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
...+..++.+|.+.|++++|..+++++.+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 345788999999999999999999887654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=142.77 Aligned_cols=221 Identities=10% Similarity=0.010 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY-KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLD 533 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 533 (820)
++++...+++.... .+.+...+..+...|...|++ ++|++.|++.++.... +...|..+...|.+.|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56667777766654 245778888888999999999 9999999999887643 68899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHh
Q 003433 534 EMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKA 613 (820)
Q Consensus 534 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (820)
++++. .|+..++..+..++...+.-...
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~-------------------------------------------------- 189 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGD-------------------------------------------------- 189 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHH--------------------------------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChh--------------------------------------------------
Confidence 99985 57777788888777765110000
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc--------CCHHHHHHHHHHHhhcCC---chhHH
Q 003433 614 GQGKKENRCRQEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRC--------NSFEDASMLLEELRLFDN---QVYGV 681 (820)
Q Consensus 614 ~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~--------g~~~eA~~~~~~~~~~~~---~~~~~ 681 (820)
...+++++|++.|++.++ +.| +...|..++.+|... |++++|.+.|+++++.+| .+..+
T Consensus 190 -------~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 190 -------EHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp -------HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred -------hhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 001255567777777766 445 466677888888877 889999999999988888 77776
Q ss_pred HHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHh
Q 003433 682 AHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEG 739 (820)
Q Consensus 682 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 739 (820)
..++...+ ..|++++|+..|+++++++|++ ...+..++.++...|++++|.+.+.+.
T Consensus 261 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 261 HLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66665555 5788999999999999999965 667999999999999999999876544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.44 E-value=5e-11 Score=123.70 Aligned_cols=189 Identities=13% Similarity=0.075 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV-TYNALLGGYGKQGKYDEVRRMFEQ 464 (820)
Q Consensus 386 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 464 (820)
++|..+|++.++.-.+-+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5555555555542112233455555555555555555555555555432 11222 555555555555555666555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 003433 465 MKADCVSPNLLTYSTLIDVYS-KGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRP 542 (820)
Q Consensus 465 m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p 542 (820)
.++.. +.+...|...+.... ..|++++|.++|++.++..+. +...|..++..+.+.|++++|..+|++++... +.|
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 55542 222333332222211 246666666666666554322 55566666666666666666666666666542 233
Q ss_pred --CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 543 --NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 543 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
....|..++....+.|+.++|..++.++++..|+.
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 23455666666666666666666666666655543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=115.30 Aligned_cols=166 Identities=15% Similarity=0.104 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+...|.+.|++++|+..+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34445555555555555555555555554443 3344445555555555555555555555544433 334444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 448 GYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVES 527 (820)
Q Consensus 448 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 527 (820)
.+...++++.|...+.+..... +.+...+..+...|.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 5555555555555555544431 233445555555555555555555555555544332 44555555555555555555
Q ss_pred HHHHHHHHHH
Q 003433 528 AVSLLDEMTK 537 (820)
Q Consensus 528 A~~~~~~m~~ 537 (820)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.4e-12 Score=133.04 Aligned_cols=97 Identities=16% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC-hhHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND-QGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFS 232 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~ 232 (820)
+......+...|++++|+..|++++...+..+. ...++..++..+...|++++|...++++... + ......++.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344455556666666666666666655311100 0234555556666666666666666555432 0 001133444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.+...|...|++++|+..|++..
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 44555555555555555554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-11 Score=114.96 Aligned_cols=172 Identities=14% Similarity=0.065 Sum_probs=154.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 403 DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLID 482 (820)
Q Consensus 403 d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 482 (820)
+..+|..|...|.+.|++++|+..|++.++.. +.+..+|..+..+|.+.|++++|...+.+..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56789999999999999999999999998876 6688999999999999999999999999988763 456778888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 483 VYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 483 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
.+...++++.|...+++..+.... +...+..+...|.+.|++++|++.|+++++.. .-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887654 78899999999999999999999999999853 2256789999999999999999
Q ss_pred hHHhHHHHhhhhhhhh
Q 003433 563 TVDDVERDLGKQKESA 578 (820)
Q Consensus 563 a~~~~~~~l~~~~~~~ 578 (820)
|+..++++++..|+..
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999888653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-10 Score=120.58 Aligned_cols=218 Identities=10% Similarity=0.058 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHcccccCChhHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 173 SKAIQCFAFAVKREERKNDQGKLASAMISILG-------RLGKV-------DLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 173 ~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
++|+.+|++++... |.+..+|..++..+. +.|++ ++|+.+|+++++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 67888999988874 445567777777765 35776 88999999888731234677888888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPN-LV-TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCS-RGGLW 315 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~ 315 (820)
.+.|++++|.++|+++.+. .|+ .. .|..++..+.+.| ++++|..+|+++++.... +...|...+.... ..|+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 8889999999999988874 343 33 7888888888888 888888888888876432 3444443333322 36888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 316 EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISP--NVVTYSTMIDGYAKAGRLDDALNMF 392 (820)
Q Consensus 316 ~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~ 392 (820)
++|..+|+++++.. +.+...|..++..+.+.|++++|+.+|++..... +.| ....|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887653 3457777778888888888888888888877752 233 3556777777777788888888887
Q ss_pred HHHHHC
Q 003433 393 SEMKFL 398 (820)
Q Consensus 393 ~~m~~~ 398 (820)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=135.67 Aligned_cols=209 Identities=12% Similarity=0.031 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW-EAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMA 358 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 358 (820)
++++++.+++..... ..+...+..+...+...|++ ++|++.|+++++.. +.+...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 22555666666666666666 66666666666543 2235566666666666666666666666
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 003433 359 EMPAKNISPNVVTYSTMIDGYAKA---------GRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKL--------GRFE 421 (820)
Q Consensus 359 ~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~--------g~~~ 421 (820)
+..+.. |+...+..+...|... |++++|++.|++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 665542 4445555555555555 55555555555555442 33344455555555444 4444
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003433 422 EALLVCKEMESSGIR---KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQ 495 (820)
Q Consensus 422 ~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 495 (820)
+|+..|++..+.. + .+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444332 1 234444444444444444444444444443331 2223333444444444444444433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=135.15 Aligned_cols=243 Identities=16% Similarity=0.120 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 003433 439 AVTYNALLGGYGKQGKYDEVRRMFEQMKAD-------CVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA------G- 504 (820)
Q Consensus 439 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~- 504 (820)
..++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...|+++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445555666666666666666666665542 11223445666666677777777777777666543 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 505 LKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 505 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
......++..+...|...|++++|+..|+++++. +..|+ ..++..+...+...|++++|+..+++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----- 181 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE----- 181 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence 1123456777778888888888888888887653 22232 33677777788888888887765544333
Q ss_pred hhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh
Q 003433 578 ANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACS 656 (820)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~ 656 (820)
++++... +..|+ ..++..++.+|.
T Consensus 182 ------------------------------------------------------~~~~~~~-~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 182 ------------------------------------------------------IYQTKLG-PDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp ------------------------------------------------------HHHHTSC-TTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 2222110 11232 345778888999
Q ss_pred ccCCHHHHHHHHHHHhhcCCc---------hhHHHHHH--Hh----cc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 003433 657 RCNSFEDASMLLEELRLFDNQ---------VYGVAHGL--LM----GY-RDNIWVQALSLFDEVKLMDSSTASAFYNALT 720 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~---------~~~~~~~~--~~----~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 720 (820)
..|++++|.++|+++.+..+. ........ +. .+ ..+.+.+|...++++...+|. ....+..++
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~la 285 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT-VTTTLKNLG 285 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch-HHHHHHHHH
Confidence 999999999999998753221 10010000 00 01 234455677777777777774 467799999
Q ss_pred HHHhhcCchHHHHHHHHHhhhh
Q 003433 721 DMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 721 ~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
.+|.+.|++++|.++++++.+.
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-12 Score=133.62 Aligned_cols=162 Identities=10% Similarity=0.022 Sum_probs=80.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC--CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-C-----CHHHHH
Q 003433 305 LLAVCSRGGLWEAARNLFNEMVHRG--IDQ---DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-P-----NVVTYS 373 (820)
Q Consensus 305 ll~~~~~~g~~~~A~~~~~~~~~~g--~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p-----~~~~~~ 373 (820)
....+...|++++|...|++..+.- ... ...++..+...|...|++++|+..+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445566666666666666665531 011 1345566666666666666666666554431000 0 123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 003433 374 TMIDGYAKAGRLDDALNMFSEMKFLGI-GLD----RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GI-RKDAVTYN 443 (820)
Q Consensus 374 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~d----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 443 (820)
.+...|...|++++|++.|++..+... ..+ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555666666666666666655543200 011 124455555555555555555555554431 11 12234445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 003433 444 ALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 444 ~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
.+...|.+.|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555555555555443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-11 Score=128.85 Aligned_cols=302 Identities=10% Similarity=-0.060 Sum_probs=141.8
Q ss_pred HHcCCCHHHHHHHHHHHHHccccc--CChhHHHHHHHHH--HHhcCChHHHH-----------HHHHHHHHcCCCCC---
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERK--NDQGKLASAMISI--LGRLGKVDLAK-----------NIFETALNEGYGNT--- 227 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~--- 227 (820)
+.+.+++++|..+++.+...-... ..+...|..++.. ....++++.+. ..++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 445889999999998886643221 2222222332221 11223333333 45555433210000
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCC-C---
Q 003433 228 -VYAFSALISAYGRSGYCQEAISVFNSMKRYNL-KP----NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQ-P--- 297 (820)
Q Consensus 228 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p----~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~-p--- 297 (820)
...+...+..+...|++++|+..|++..+.-. .+ ...+|..+...+...| ++++|+..+++.++.... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccch
Confidence 11122255556666777777777776654200 01 1234555556666666 666666666655532100 0
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH
Q 003433 298 --DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST 374 (820)
Q Consensus 298 --~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 374 (820)
...+++.+..+|...|++++|+..|++.++.... .+.. ....++..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~ 229 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ-------------------------------LMGRTLYN 229 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-------------------------------HHHHHHHH
Confidence 1234444555555555555555555554432000 0000 00124444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFL----GI-GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRKDAVTYNAL 445 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~----~~-~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 445 (820)
+...|...|++++|++.|++..+. +. +....++..+...|.+.|++++|...+++..+. +-+.....+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555555555554431 11 122344555555555555555555555544321 101112224445
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 446 LGGYGKQGK---YDEVRRMFEQMKADCVSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 446 i~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
...|...|+ +++|..++++. +..+ ....+..+...|.+.|++++|...|++..+
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666 55555555544 1111 223455566666666666666666666543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-12 Score=130.75 Aligned_cols=134 Identities=17% Similarity=0.227 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHccc-----ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C-C
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREE-----RKNDQGKLASAMISILGRLGKVDLAKNIFETALNE------G-Y 224 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~ 224 (820)
+.+..+...+...|++++|+.+|+.++.... ..+....++..++.+|...|++++|...|++++.. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3566677778888888888888888776311 12334456677777777788888888777777653 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 003433 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKRY------NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDML 291 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~ 291 (820)
+....++..+...|...|++++|+..|+++.+. +-.| ....+..+...+...| ++++|+++|++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-KYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 223456666666777777777777777666542 1111 1223444444444444 4445544444444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-09 Score=116.64 Aligned_cols=271 Identities=10% Similarity=-0.008 Sum_probs=168.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCC--hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-NT----VYAFS 232 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~ 232 (820)
......+...|++++|+..++.++........ ...++..+...+...|++++|...++++...... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33455667789999999999998876421111 1225667778888899999999999888653111 12 23466
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCC----CHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMKRY----NLK--P-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQP----DRIT 301 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p----~~~~ 301 (820)
.+...+...|++++|.+.+++..+. +.. | ....+..+...+...| ++++|...+++.+...... ...+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 7788888899999999888887642 111 2 2345566677777888 8888888888877542211 2345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHchhCCCCCC---HHHH
Q 003433 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-D-IFTYN----TLLDAICKGAQMDLAFEIMAEMPAKNISPN---VVTY 372 (820)
Q Consensus 302 ~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-~-~~~~~----~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~ 372 (820)
+..+...+...|++++|...+++.......+ + ..... .++..+...|++++|...+++......... ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 6677777788888888888888776531111 1 11111 233446677888888888877765432211 2245
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFL----GIGLDR-VSYNTVLSIYAKLGRFEEALLVCKEME 431 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~d~-~~~~~li~~~~~~g~~~~A~~~~~~~~ 431 (820)
..+...+...|++++|...+++.... +...+. ..+..+..++...|+.++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56666677777777777777665432 111111 134444555556666666666655543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-10 Score=117.94 Aligned_cols=269 Identities=10% Similarity=0.010 Sum_probs=158.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHchhCCC-CCC----HHHHHHHHH
Q 003433 307 AVCSRGGLWEAARNLFNEMVHRGIDQDI----FTYNTLLDAICKGAQMDLAFEIMAEMPAKNI-SPN----VVTYSTMID 377 (820)
Q Consensus 307 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~ 377 (820)
..+...|++++|...+++..+.....+. .+++.+...+...|++++|++.+++...... ..+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3445566666666666666554322222 1345555666666677666666666543200 001 123455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFL----GIG--L-DRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIR----KDAVTYNALL 446 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~----~~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~li 446 (820)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++..+..-. ....++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 677777777777777766542 211 2 2234556667777777777777777776543211 1234566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSP-N-LLTYS----TLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALID 517 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~ 517 (820)
..+...|++++|...+++.......+ + ..... .++..+...|++++|...+++..+..... ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 77777888888888877765431111 1 11111 23344667788888888887776533211 1334566777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 518 ALCKNGLVESAVSLLDEMTKE----GIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~----g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+...|++++|...++++... |..++.. ++..+..++...|+.++|...+++++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 888888888888888877542 2222222 556667777888888888888887776544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-10 Score=108.78 Aligned_cols=213 Identities=8% Similarity=-0.001 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV-VTYNSIIDA 553 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~ 553 (820)
..+..+...|...|++++|+..|++.++....++...+..+..++...|++++|+..|++.++. .|+. .+|..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444444444444444444444444444332234444444444455555555555555555442 2222 244444445
Q ss_pred HhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHH
Q 003433 554 FGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVF 633 (820)
Q Consensus 554 ~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~ 633 (820)
+...|++++|+..++++++..|....+ ...+...+..++.. ....+++++|++.|
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~-----------------~~~~~~~~~~~g~~--------~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATI-----------------EKLYAIYYLKEGQK--------FQQAGNIEKAEENY 140 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHH-----------------HHHHHHHHHHHHHH--------HHHTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHH-----------------HHHHHHHHHHHhHH--------HHHhccHHHHHHHH
Confidence 555555555555554444444432210 01111111111100 11223677788888
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC
Q 003433 634 QKMHKLKIKPN---VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 634 ~~m~~~~~~Pd---~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 710 (820)
++.++ +.|+ ...+..++.+|... +..+++++....+........ ......+.+++|+..++++++++|+
T Consensus 141 ~~al~--~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 141 KHATD--VTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKYAS-EKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHTT--SSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHh--cCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 88876 5676 34577777777544 344455555443333221111 1112356778888888888888885
Q ss_pred cchhHHHHHHHHH
Q 003433 711 TASAFYNALTDML 723 (820)
Q Consensus 711 ~~~~~~~~l~~~~ 723 (820)
+ ......|..+.
T Consensus 213 ~-~~~~~~l~~i~ 224 (228)
T 4i17_A 213 R-TEIKQMQDQVK 224 (228)
T ss_dssp C-HHHHHHHHHHH
T ss_pred C-HHHHHHHHHHH
Confidence 5 55566666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-10 Score=104.42 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
..+..+...+...|++++|++.|+++.+... .+...+..+...|...|++++|...++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444555555666666666666666554422 144555555555555666666666555555442 33444455555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAM 494 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 494 (820)
...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|..+++++.+.. +.+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554432 2344444444444555555555555554444331 223344444444444444444444
Q ss_pred HHHHHHH
Q 003433 495 QIFREFK 501 (820)
Q Consensus 495 ~~~~~m~ 501 (820)
..++++.
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.3e-10 Score=119.18 Aligned_cols=163 Identities=11% Similarity=0.070 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAK----NIS-PNVVTYSTMIDGYAKAGRLDDALNMFSEMKF-----LGIGLDRV 405 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~d~~ 405 (820)
+++.+...|...|++++|++.|++..+. +.. ....++..+..+|...|++++|++.|++..+ .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 4444555555555555555555444321 100 0123455555666666666666666665554 22 22245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVTYNALLGGYGKQGK---YDEVRRMFEQMKADCVSPN-LLTY 477 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~ 477 (820)
++..+...|.+.|++++|...+++..+.. -+.....+..+...|...++ +.+|..++++. +..++ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 55666666666666666666666654421 11123344455555556666 55555555542 11111 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003433 478 STLIDVYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~ 502 (820)
..+...|.+.|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666677777777777777766654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-10 Score=105.49 Aligned_cols=166 Identities=17% Similarity=0.118 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK 486 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 486 (820)
+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444445555555555555555544332 2344555555555555555555555555554431 2344555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHh
Q 003433 487 GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 487 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.|++++|.+.|+++.+... .+...+..++..+...|++++|...|+++.+.. ..+..++..+...+...|++++|+..
T Consensus 89 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666665555555432 245555555666666666666666666655532 22344555666666666666666666
Q ss_pred HHHHhhhhhh
Q 003433 567 VERDLGKQKE 576 (820)
Q Consensus 567 ~~~~l~~~~~ 576 (820)
++++++..++
T Consensus 167 ~~~~~~~~~~ 176 (186)
T 3as5_A 167 FKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHcCCC
Confidence 6666655544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=130.99 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
.+|+.|...|.+.|++++|++.|++.++.. +-+..+|..|..+|.+.|++++|+..|++.++.. +.+...|+.+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344555555555555555555555544442 2234444455555555555555555555444433 23344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
.+.|++++|++.|++.++.. +-+...|+.+..+|.+.|++++|++.|++.++..+. +...|..++..|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 55555555555554444431 223444444444444444444444444444443322 3444444444444444444444
Q ss_pred HHHHHHH
Q 003433 530 SLLDEMT 536 (820)
Q Consensus 530 ~~~~~m~ 536 (820)
+.+++++
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-09 Score=115.84 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=163.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----C-CCC-CHHHH
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGI-DQ----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----N-ISP-NVVTY 372 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g-~~p-~~~~~ 372 (820)
.....+...|++++|+..|+++.+... .+ ...++..+...|...|+++.|+..+++..+. + ..+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455666777777777776654310 11 2456677777777777777777777765532 1 011 24578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFL----GIGL-DRVSYNTVLSIYAKLGRFEEALLVCKEMES-----SGIRKDAVTY 442 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 442 (820)
+.+...|...|++++|++.|++..+. +... ...++..+...|...|++++|+..|++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 88999999999999999999887653 2111 235678889999999999999999998876 33 3347788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKADC----VSPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKA-DVVLYSA 514 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ 514 (820)
..+...|.+.|++++|...+++..+.. .+.....+..+...|...++ +.+|+..+++. +..+ ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999987642 12224456667777778888 77777777763 2222 2346677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
+...|...|++++|...|+++.+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=4e-10 Score=129.37 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 412 (820)
+...|+.|...|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3566777777777777777777777777765332 46677777777777777777777777777653 345667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
+|.+.|++++|++.|++.++.. +.+...|+.+..+|.+.|++++|++.|++.++.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 7777777777777777776654 4556777777777777777777777777776652 3346677777777777777777
Q ss_pred HHHHHHHHHH
Q 003433 493 AMQIFREFKQ 502 (820)
Q Consensus 493 A~~~~~~m~~ 502 (820)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=116.85 Aligned_cols=231 Identities=11% Similarity=0.065 Sum_probs=143.3
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHH
Q 003433 486 KGGLYKEAMQIFREFKQ-------AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE------GIRPN-VVTYNSII 551 (820)
Q Consensus 486 ~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll 551 (820)
..|++++|+..|++.++ .+......++..+...|...|++++|+..|+++++. +-.|+ ..++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554443 221224567888888899999999999999888754 22233 34788899
Q ss_pred HHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHH
Q 003433 552 DAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILG 631 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 631 (820)
.+|...|++++|+..+++++.......+- ... .....+..+...|. ..+++++|+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~---~~~~~~~~la~~~~---------------~~g~~~~A~~ 148 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGK------FHP---DVAKQLNNLALLCQ---------------NQGKAEEVEY 148 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCT------TCH---HHHHHHHHHHHHHH---------------TTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCC------CCh---HHHHHHHHHHHHHH---------------HcCCHHHHHH
Confidence 99999999999999999998864321100 000 00012222222222 2348889999
Q ss_pred HHHHHHHC------CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcC---------CchhHHHHHHHh-----cc-
Q 003433 632 VFQKMHKL------KIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFD---------NQVYGVAHGLLM-----GY- 689 (820)
Q Consensus 632 ~~~~m~~~------~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~---------~~~~~~~~~~~~-----~~- 689 (820)
.|++++.. +-.|+ ..++..++.+|...|++++|.++|+++.+.. +....+...... ..
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 99999874 22443 4568899999999999999999999987541 111111111110 00
Q ss_pred -ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 690 -RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 690 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
....+.++...++.+....| .....+..|+.+|.+.|++++|..+++++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSP-TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CC------------CCCCCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12345556666655554445 3466799999999999999999999988764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-09 Score=105.61 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 335 FTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIY 414 (820)
Q Consensus 335 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~ 414 (820)
..+..+...+.+.|++++|++.|++..+....++...+..+..+|...|++++|++.|++..+.. +-+...+..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 33333444444444444444444444433221233333334444444444444444444444432 22233444444444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 003433 415 AKLGRFEEALLVCKEMESSGIRKDA-------VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN---LLTYSTLIDVY 484 (820)
Q Consensus 415 ~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 484 (820)
...|++++|+..|++..+.. +.+. ..|..+...+.+.|++++|+..|++.++. .|+ ...+..+..+|
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 44444444444444444332 2222 23444555555555666666666555543 232 33444455554
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...| ..+++++...+. .+...|..+. ....+.+++|+..|++.++
T Consensus 164 ~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 3322 223333333321 1333333222 2233446666666666665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-09 Score=109.55 Aligned_cols=163 Identities=9% Similarity=0.005 Sum_probs=98.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHH
Q 003433 413 IYAKLGRFEEALLVCKEMESS----GIRKD-AVTYNALLGGYGKQGKYDEVRRMFEQMKADCVS-PN----LLTYSTLID 482 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~ 482 (820)
.|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555444321 10111 345555666666666666666666655432100 01 346677778
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 003433 483 VYSKG-GLYKEAMQIFREFKQAGLKA-D----VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNV------VTYNSI 550 (820)
Q Consensus 483 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~l 550 (820)
+|... |++++|+..|++.++..... + ..+|..++..|.+.|++++|+..|+++.+....... .+|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 88888888888876532110 1 356778888888999999999999988875322211 156667
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
..++...|++++|+..++++++..|
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7778888888888887777776544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.4e-10 Score=112.33 Aligned_cols=156 Identities=16% Similarity=0.089 Sum_probs=81.0
Q ss_pred hCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC------CCC-CCHHHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVHR-------GIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK------NIS-PNVVTYSTMI 376 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------g~~-p~~~~~~~li 376 (820)
..|++++|+.+|++.++. ..+....++..+...|...|++++|+..|+++.+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 11123455666666666667777776666665532 111 1234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFL------G-IGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS------G-IRKDAVTY 442 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~------~-~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~ 442 (820)
..|...|++++|++.|+++... . .+....++..+...|...|++++|+..++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6666666666666666665443 0 0112344555555555556666666655555432 0 01123344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
..+...|.+.|++++|..+|+++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-09 Score=103.60 Aligned_cols=210 Identities=11% Similarity=0.049 Sum_probs=130.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD---VVLYSALIDALCKNGLVESAVSLLDEMTKEGI-RPN-VVTY 547 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~~~ 547 (820)
+...+-.+...+.+.|++++|+..|+++++..+. + ...+..+..+|.+.|++++|+..|+++++... .|+ ..++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4555556666666777777777777777665422 2 45666677777777777777777777766411 112 2355
Q ss_pred HHHHHHHhh--------cCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccc
Q 003433 548 NSIIDAFGR--------SATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKE 619 (820)
Q Consensus 548 ~~ll~~~~~--------~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (820)
..+..++.+ .|++++|+..++++++..|+.....
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------------------------------------- 134 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD-------------------------------------- 134 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH--------------------------------------
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH--------------------------------------
Confidence 566666666 7777777777777777666542110
Q ss_pred hhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCch---hHHHHHHHhcc-------
Q 003433 620 NRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQV---YGVAHGLLMGY------- 689 (820)
Q Consensus 620 ~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~---~~~~~~~~~~~------- 689 (820)
.++..+..+... -...+..++..|.+.|++++|...|+++++.+|++ ......+...+
T Consensus 135 --------~a~~~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 202 (261)
T 3qky_A 135 --------DATQKIRELRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQS 202 (261)
T ss_dssp --------HHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHHHHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccc
Confidence 011111111000 01125678888999999999999999999887763 23333333222
Q ss_pred ----ccchHHHHHHHHHHHhhcCCCcc--hhHHHHHHHHHhhcCchHHHH
Q 003433 690 ----RDNIWVQALSLFDEVKLMDSSTA--SAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 690 ----~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 733 (820)
..|++++|+..++++++..|++. ...+..+..++.+.|+++++.
T Consensus 203 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 203 VRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 12889999999999999999653 234556666766666665544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-08 Score=105.16 Aligned_cols=97 Identities=7% Similarity=0.040 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----
Q 003433 265 TYNAVIDACGKG-GVDFKHVVEIFDDMLRNGVQP-D----RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDI---- 334 (820)
Q Consensus 265 ~~~~ll~~~~~~-g~~~~~A~~~~~~m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~---- 334 (820)
+|+.+...|... | ++++|+..|++.++..... + ..++..+...+.+.|++++|+..|+++.+.......
T Consensus 119 ~~~~lg~~~~~~lg-~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 119 FKFELGEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 444444455443 5 5555555555554321100 0 234555555555566666666666655554321111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHchh
Q 003433 335 --FTYNTLLDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 335 --~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 362 (820)
..|..+..++...|++++|+..|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1344555555566666666666665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-07 Score=94.26 Aligned_cols=221 Identities=9% Similarity=0.015 Sum_probs=170.0
Q ss_pred CCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc-
Q 003433 169 RGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG--KVDLAKNIFETALNEGYGNTVYAFSALISAY----GRS- 241 (820)
Q Consensus 169 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 241 (820)
....++|+++++.++..+ |....+++.-..++...| +++++++.++.++...+. +..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 334468999999999885 666678888889999998 999999999999987654 677888777666 555
Q ss_pred --CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---
Q 003433 242 --GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL--- 314 (820)
Q Consensus 242 --g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--- 314 (820)
+++++++++++++.+...+ |-.+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~-~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFD-LHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 7889999999999886544 8888888777777777 777 899999999987655 77778777777777766
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 315 ---WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL-AFEIMAEMPAKN--ISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 315 ---~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
++++++.+++++... +.|...|+.+...+.+.|+... +..+.+++.+.+ -..+...+..+.++|.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 888888888888765 4578888888888888877444 445666655432 122667777788888888888888
Q ss_pred HHHHHHHHH
Q 003433 389 LNMFSEMKF 397 (820)
Q Consensus 389 ~~~~~~m~~ 397 (820)
+++++.+.+
T Consensus 278 ~~~~~~l~~ 286 (306)
T 3dra_A 278 RTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888775
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.01 E-value=7.1e-08 Score=96.94 Aligned_cols=143 Identities=8% Similarity=0.025 Sum_probs=63.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 283 VVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 283 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
|+..|++.+..+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444332 22333344444555555555555555555444331 1234444455555555555555555555554
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 362 AKNISP-----NVVTYSTMIDG--YAKAG--RLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 362 ~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 22 12333333333 12222 555555555555443 333222233333455555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=98.70 Aligned_cols=172 Identities=12% Similarity=0.042 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHH----------------HHHHHHhcCChHHHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASA----------------MISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~ 219 (820)
.+.+......+.+.|++++|+..|+.++... |.+..++.. ++.+|.+.|++++|+..|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445556667888999999999999999875 334445555 677777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCCCC
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGG-VDFKHVVEIFDDMLRNGVQPD 298 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~~A~~~~~~m~~~g~~p~ 298 (820)
++..+. +..+|..+..+|...|++++|+..|++..+..+. +..+|..+...+...| ...+.+...+..... ..|.
T Consensus 81 l~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 81 LQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 766433 6667777777777777777777777777664322 4556666666654433 022333444444321 1222
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFT 336 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 336 (820)
...+..+..++...|++++|+..|++.++. .|+...
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 223333344445556666666666666653 344433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=102.87 Aligned_cols=216 Identities=12% Similarity=0.010 Sum_probs=143.4
Q ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHHH
Q 003433 153 LCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG--NTVYA 230 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 230 (820)
..+++.+..+...+.+.|++++|++.|+.++...+..+....++..++.++.+.|++++|+..|+++++..+. ....+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677788888999999999999999999875433333567888999999999999999999999886432 23567
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 231 FSALISAYGR--------SGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITF 302 (820)
Q Consensus 231 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~ 302 (820)
+..+..++.+ .|++++|+..|+++.+.... +...+..+ ..+..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~---------------~~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT---------------QKIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH---------------HHHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH---------------HHHHHHHHH----HHHHH
Confidence 8888889988 99999999999999874322 22222111 111111100 01124
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHchhCCCCCC--
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKG----------AQMDLAFEIMAEMPAKNISPN-- 368 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~----------g~~~~A~~~~~~m~~~g~~p~-- 368 (820)
..+...|.+.|++++|+..|+++++..... ....+..+..+|.+. |++++|+..|+++.+......
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 556677777788888888887777653211 234666677777655 777888888877776532211
Q ss_pred HHHHHHHHHHHHHcCCHHHH
Q 003433 369 VVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 369 ~~~~~~li~~~~~~g~~~~A 388 (820)
..+...+...+.+.++++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 23444555555555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-07 Score=98.42 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003433 315 WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA--Q-----MDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDD 387 (820)
Q Consensus 315 ~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 387 (820)
+..|..+++.+...--..+...|...+..-...+ - .+.+..+|++++... .-+...|...+..+.+.|+.++
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3344555544433100013445655555433221 1 244667888877653 2357778888888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCCH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG---------I---RKDAVTYNALLGGYGKQGKY 455 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~---~~~~~~~~~li~~~~~~g~~ 455 (820)
|..+|++.... +.+...+. .|....+.++. ++.+.+.- . ......|...+..+.+.+..
T Consensus 232 ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~ 302 (493)
T 2uy1_A 232 AKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493)
T ss_dssp HHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCH
Confidence 99999988877 33333332 22222111111 22222110 0 01135577777777778889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDE 534 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 534 (820)
+.|..+|++. ... ..+...|...+..-...+ +.+.|..+|+...+.... +...|...++...+.|+.+.|..+|++
T Consensus 303 ~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 303 ELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp HHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998 321 224444443333222333 699999999999876432 466677788888899999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 535 MTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 535 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
+.+ ....|...++--...|+.+.+..++++++..
T Consensus 380 ~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 380 LEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp SCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 732 4667888887767789998888888887753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-07 Score=95.25 Aligned_cols=184 Identities=10% Similarity=0.010 Sum_probs=97.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 388 ALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 388 A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..|.+.|+.+.|.+++++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 34444445555666666666666666666554431 1244555555666666666666666666665
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 467 ADCVSP-----NLLTYSTLIDVY--SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 467 ~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 34 233444444332 2222 6666666666665532 3322223333356666666666666665543
Q ss_pred C-----CC---CC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 538 E-----GI---RP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 538 ~-----g~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
. .. .| |..++..+|......|+ +|.+++.++.+..|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 00 13 33355455554445554 56666666666666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.4e-08 Score=96.62 Aligned_cols=135 Identities=15% Similarity=0.056 Sum_probs=88.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL 489 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 489 (820)
+...|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++.++.. +.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7777778888888888888777665 5567777788888888888888888888877753 3456777777777765543
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 490 --YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSI 550 (820)
Q Consensus 490 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 550 (820)
...+...++.... ..|....+..+..++...|++++|+..|++.++ +.|+......+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3444555555432 122223344455666677888888888888876 46665544433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.9e-08 Score=86.90 Aligned_cols=123 Identities=21% Similarity=0.279 Sum_probs=49.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 003433 411 LSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLY 490 (820)
Q Consensus 411 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 490 (820)
...+...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+|+++...+ +.+...+..+...|...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCH
Confidence 333333344444444443333322 2233333333444444444444444444433321 22233344444444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 491 KEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 491 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
++|.+.++++.+... .+...+..++..+.+.|++++|...|+++.
T Consensus 86 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 86 DEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 444444444443321 133444444444444444444444444444
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-08 Score=87.09 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45666667777777777777777766553 3455666666777777777777777777766554 445666666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 451 KQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 451 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
+.|++++|..+++++.... +.+...+..++..|.+.|++++|...|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777766542 334566666777777777777777777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.2e-09 Score=119.65 Aligned_cols=153 Identities=12% Similarity=-0.021 Sum_probs=76.1
Q ss_pred HcCCCHHHHHHHHHHHH--------HcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 167 GNRGEWSKAIQCFAFAV--------KREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...|++++|++.|++++ .. .+.+..++..++.++.+.|++++|+..|+++++.++ .+..+|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHH
Confidence 44555555555555555 22 123333455555555555555555555555555432 2455555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 318 (820)
.+.|++++|++.|++..+.... +...|..+..++.+.| ++++ ++.|+++++.... +...|..+..++.+.|++++|
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g-~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAG-NTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHT-CCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC-ChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555543221 3444445555555555 4555 5555555543222 344445555555555555555
Q ss_pred HHHHHHHHH
Q 003433 319 RNLFNEMVH 327 (820)
Q Consensus 319 ~~~~~~~~~ 327 (820)
++.|+++++
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 555554444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.5e-09 Score=97.42 Aligned_cols=118 Identities=7% Similarity=-0.014 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
+++++|++.|++... ..|+ ...+..++..|.+.|++++|++.|+++++.+|.+..+...+...+ ..|++++|+..|
T Consensus 11 ~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 355556666655543 3332 333455666666666666666666666666666666555554444 456666666666
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH-HHHhhhhhh
Q 003433 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV-VLEGKRRQV 744 (820)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 744 (820)
+++++++|++ ...|..++.+|.+.|++++|.+. ++++.+...
T Consensus 89 ~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 89 RRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp HHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 6666666643 44566666666666666655443 355554433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.3e-08 Score=92.69 Aligned_cols=162 Identities=9% Similarity=-0.036 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG----RLDDALNMFSEMKFLGIGLDRVSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~~d~~~~~ 408 (820)
+...+..|...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 33444444444443 3 4444444444444332 333444
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 409 TVLSIYAK----LGRFEEALLVCKEMESSGIR-KDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVSPNLLTYST 479 (820)
Q Consensus 409 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 479 (820)
.|...|.. .+++++|+..|++..+.|.. .+...+..|...|.. .++.++|...|++..+. ..+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 44444433 44444444444444433310 013444444444444 44444455544444443 112233444
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHC
Q 003433 480 LIDVYSKG-G-----LYKEAMQIFREFKQA 503 (820)
Q Consensus 480 li~~~~~~-g-----~~~~A~~~~~~m~~~ 503 (820)
|..+|... | ++++|...|++..+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 44444332 1 444555444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=115.58 Aligned_cols=177 Identities=12% Similarity=-0.012 Sum_probs=147.1
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 380 AKAGRLDDALNMFSEMK--------FLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 380 ~~~g~~~~A~~~~~~m~--------~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 442 4466788889999999999999999999998765 5678899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSL 531 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 531 (820)
.|++++|+..|++.++.. +.+...|..+..+|.+.|++++ ++.|++.++.+.. +...|..+..+|.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998863 4467889999999999999999 9999999987654 788999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHhhcCchhhh
Q 003433 532 LDEMTKEGIRPNV-VTYNSIIDAFGRSATTECT 563 (820)
Q Consensus 532 ~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a 563 (820)
|+++++ +.|+. ..+..+..++...++.+++
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC-------C
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCCCCCC
Confidence 999987 46765 4777888888776654433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.5e-07 Score=91.28 Aligned_cols=176 Identities=10% Similarity=0.006 Sum_probs=127.1
Q ss_pred HHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 003433 352 LAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLG----RFEEALLVC 427 (820)
Q Consensus 352 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g----~~~~A~~~~ 427 (820)
+|++.|++..+.| +...+..|...|...+++++|+++|++..+.| +...+..|...|.. + ++++|+..|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4667777777664 77778888888888888888888888887765 56667777777776 6 788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003433 428 KEMESSGIRKDAVTYNALLGGYGK----QGKYDEVRRMFEQMKADCVS-PNLLTYSTLIDVYSK----GGLYKEAMQIFR 498 (820)
Q Consensus 428 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~ 498 (820)
++..+.| +...+..|...|.. .+++++|+..|++..+.+.. .+...+..|..+|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877644 56677777777776 77888888888887776411 016677777777777 677888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 003433 499 EFKQAGLKADVVLYSALIDALCKN-G-----LVESAVSLLDEMTKEG 539 (820)
Q Consensus 499 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 539 (820)
+..+.+ .+...+..|...|... | +.++|+..|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 887751 2445666677777653 3 7788888888877765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-07 Score=93.38 Aligned_cols=189 Identities=14% Similarity=0.063 Sum_probs=130.5
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--VYAFS 232 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 232 (820)
+++.+..+...+.+.|++++|+..|+.++...+..+....++..++.++.+.|++++|+..|+++++..+... ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3556667788899999999999999999987544443345778899999999999999999999988754322 13555
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 233 ALISAYGR------------------SGYCQEAISVFNSMKRYNLKPNL-VTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 233 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
.+..++.+ .|++++|+..|+++.+.. |+. ..+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~-----------~~~~~~--- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV-----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH-----------HHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH-----------HHHHHH---
Confidence 56666654 456777777777777643 322 1221111000 000000
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCC
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD---IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNI 365 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 365 (820)
......+...|.+.|++++|+..|+++++... .+ ...+..+..+|.+.|+.++|++.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123466778899999999999999988632 12 25688899999999999999999998887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.2e-09 Score=93.57 Aligned_cols=145 Identities=10% Similarity=-0.037 Sum_probs=95.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSG 242 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 242 (820)
...+...|++++|++.|..+.... +.....+..++.+|.+.|++++|++.|+++++..+. +..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 334555677788888877776653 333345566777888888888888888888776433 6777888888888888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEI-FDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
++++|+..|++..+.... +...|..+...+.+.| ++++|.+. ++++++..+. +..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~-~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKND-VTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHC-SSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 888888888877764322 5667777777777777 66555443 4666664332 55566665555555553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.8e-07 Score=90.40 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG--LWEAARNLFNEMVHRGIDQDIFTYNTLLDAI----CKG---AQM 350 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~----~~~---g~~ 350 (820)
.++|++++++++..... +...|+.-..++...| +++++++.++.++... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 35566666666654322 3444555555555555 6666666666666543 22344454444444 333 556
Q ss_pred HHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHH
Q 003433 351 DLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLD--DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR------FEE 422 (820)
Q Consensus 351 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~------~~~ 422 (820)
++++++++++.+...+ +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 6666666666655433 5566666666666666665 6666666666554 3455555555544444444 566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003433 423 ALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE-VRRMFEQMKADC--VSPNLLTYSTLIDVYSKGGLYKEAMQIFRE 499 (820)
Q Consensus 423 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 499 (820)
+++.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++.+|.+.|+.++|.++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666665554 4566666666666666655333 333444433221 123455555666666666666666666666
Q ss_pred HHH
Q 003433 500 FKQ 502 (820)
Q Consensus 500 m~~ 502 (820)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-08 Score=93.66 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE 222 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 222 (820)
+......+.+.|++++|+..|+++++.. |.+..++..++.++.+.|++++|+..|+++...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 3444555555666666666666555543 233345555566666666666666666555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-06 Score=92.11 Aligned_cols=345 Identities=9% Similarity=-0.025 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcC
Q 003433 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGK-VDLAKNIFETALNE-GY-GNTVYAFSALISAYG----RSG 242 (820)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g 242 (820)
++++.+..+|++++..- | +..+|...+....+.+. .+....+|+.++.. |. ..+...|...+..+. ..|
T Consensus 28 ~~~e~~~~iferal~~~---p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC---C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH
Confidence 77888999998888752 2 44577777776666663 45677788887763 32 236678887777654 346
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGK-------------GGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVC 309 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------------~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 309 (820)
+.+.+..+|++.+......-...|......-.. .+ .+..|..+++++...-...+...|...+..-
T Consensus 104 ~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~-~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E 182 (493)
T 2uy1_A 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP-IFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182 (493)
T ss_dssp HHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH-HHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 778888899888874221112222222211100 01 2334444444443210001333555544443
Q ss_pred HhC--CC-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 310 SRG--GL-----WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 310 ~~~--g~-----~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
... |- .+.+..+|++++... +.+...|...+..+.+.|+.+.|..+|++.... +.+...|. .|...
T Consensus 183 ~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~ 255 (493)
T 2uy1_A 183 MENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLV 255 (493)
T ss_dssp HTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHH
T ss_pred hcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhh
Confidence 222 11 345778999988753 556888998999999999999999999999887 22333332 23322
Q ss_pred CCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMKFLG---------I---GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG 450 (820)
Q Consensus 383 g~~~~A~~~~~~m~~~~---------~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 450 (820)
.+.++. ++.+.+.- . ......|...+..+.+.+..+.|..+|++. +.. ..+...|...+..-.
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222222 22222210 0 011245666777777788999999999999 322 234555554333333
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 451 KQG-KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAV 529 (820)
Q Consensus 451 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 529 (820)
..+ +.+.|..+|+...+.. +-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 333 6999999999988753 3345566777888888999999999999972 26788999998888899999999
Q ss_pred HHHHHHHH
Q 003433 530 SLLDEMTK 537 (820)
Q Consensus 530 ~~~~~m~~ 537 (820)
++++++..
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.5e-08 Score=98.31 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 401 GLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 401 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...|.+.|++++|...++++... .|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 3344566677777888888888888888887665 556777888888888888888888888887664 3454433322
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhh
Q 003433 481 -IDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN---VVTYNSIIDAFGR 556 (820)
Q Consensus 481 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 556 (820)
...+...++.++|...|++..+..+. +...+..+...|...|++++|+..|+++++. .|+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 33355667777788888888776643 6778888888888888888888888888874 333 4578888888888
Q ss_pred cCchhhhHHhHHHHhh
Q 003433 557 SATTECTVDDVERDLG 572 (820)
Q Consensus 557 ~g~~~~a~~~~~~~l~ 572 (820)
.|+.++|+..+++++.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888887776654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-08 Score=89.89 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=92.0
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (820)
+.|+ ...+..++..+.+.|++++|...|++++..+|.+...+.++...+ ..|++++|+..|+++++++|++ +..|..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence 6675 446889999999999999999999999999999999888877666 6899999999999999999965 667999
Q ss_pred HHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 719 LTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
++.+|.+.|++++|...++++.+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-08 Score=92.11 Aligned_cols=158 Identities=12% Similarity=0.093 Sum_probs=82.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcC
Q 003433 410 VLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGG 488 (820)
Q Consensus 410 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g 488 (820)
+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|...|+++... .|+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhhc
Confidence 3444555555555555555543332 334455555555555555555555555554433 1233222221111 11111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhH
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDV 567 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 567 (820)
...+|...|++.++..+. +...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|+..+
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222356666666655432 56666666666677777777777777666642221 2346666666666677777666666
Q ss_pred HHHh
Q 003433 568 ERDL 571 (820)
Q Consensus 568 ~~~l 571 (820)
++++
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.3e-08 Score=87.77 Aligned_cols=104 Identities=14% Similarity=-0.042 Sum_probs=92.2
Q ss_pred CCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHH
Q 003433 641 IKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNA 718 (820)
Q Consensus 641 ~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 718 (820)
++|+ ...+...++.|.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|++ ...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHH
Confidence 6776 456889999999999999999999999999999988877776655 6899999999999999999965 667999
Q ss_pred HHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 719 LTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 719 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+|.+|...|++++|.+.++++.+....
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 999999999999999999999877543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.4e-07 Score=90.79 Aligned_cols=204 Identities=9% Similarity=-0.030 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCH--HHHHH
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ--DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNV--VTYST 374 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ 374 (820)
...+..+...+.+.|++++|+..|+++++..... ....+..+..+|.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445555666677777777777777776643111 1345666677777777777777777776665322111 13333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 375 MIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 375 li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
+..++.+.|.. .+ ..|..+...+...|++++|+..|+++++.. +.+...+.+.....
T Consensus 84 ~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 84 RGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH-----
T ss_pred HHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH-----
Confidence 44444332210 00 011222333344667777777777777653 22333332211100
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 455 YDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKAD--VVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 455 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
.+...+. .....+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|++.+
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0001100 1123456778888888888888888887643211 246777888888888888888888
Q ss_pred HHHHHC
Q 003433 533 DEMTKE 538 (820)
Q Consensus 533 ~~m~~~ 538 (820)
+.+...
T Consensus 208 ~~l~~~ 213 (225)
T 2yhc_A 208 KIIAAN 213 (225)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=96.00 Aligned_cols=164 Identities=10% Similarity=-0.012 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHH-HH
Q 003433 298 DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYST-MI 376 (820)
Q Consensus 298 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li 376 (820)
+...+..+...+...|++++|+..|+++++.. +.+...+..+...|.+.|++++|+..|+++.... |+...... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 45566677777888888888888888888764 3457778888888888888888888888887653 44433322 23
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCC
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKD--AVTYNALLGGYGKQGK 454 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~ 454 (820)
..+.+.++.++|+..|++..... +.+...+..+...|...|++++|+..|+++++.. +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 33566777777888888877764 5567778888888888888888888888887654 222 5677778888888888
Q ss_pred HHHHHHHHHHHH
Q 003433 455 YDEVRRMFEQMK 466 (820)
Q Consensus 455 ~~~A~~~~~~m~ 466 (820)
.++|...|++.+
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 888887777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-06 Score=86.54 Aligned_cols=223 Identities=11% Similarity=0.075 Sum_probs=154.5
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLG-KVDLAKNIFETALNEGYGNTVYAFSALISAYGRS-G- 242 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g- 242 (820)
+...+..++|+++++.++..+ |.+..+++.-..++...| .+++++++++.++...+. +..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n---P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN---PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 344455678999999999885 566678888888888888 599999999999987654 888999988888877 7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 003433 243 YCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFK--------HVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGL 314 (820)
Q Consensus 243 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 314 (820)
++++++++++++.+...+ |..+|+.-.-.+.+.+ .++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~-~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFS-TLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-cccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 899999999999986554 7888877665555544 444 888888888887555 77778877777777765
Q ss_pred -------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHchhCC---
Q 003433 315 -------WEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM--------------------DLAFEIMAEMPAKN--- 364 (820)
Q Consensus 315 -------~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--------------------~~A~~~~~~m~~~g--- 364 (820)
++++++.+++++... +.|...|+-+-..+.+.|+. ....+...++...+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 678888888877764 45677787777777666653 22222222232221
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 365 --ISPNVVTYSTMIDGYAKAGRLDDALNMFSEMK 396 (820)
Q Consensus 365 --~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 396 (820)
-.++...+..|++.|...|+.++|.++++.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 01344555555556655566566666655554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.8e-08 Score=98.60 Aligned_cols=157 Identities=11% Similarity=0.028 Sum_probs=96.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFL----GIGL-DRVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRK--DAVTYNALL 446 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~----~~~~-d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~li 446 (820)
.|...|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++.++. | .+ -..+++.+.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg 123 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAG 123 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 444555555555555544332 1000 0234555666666666666666666655332 1 11 134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSP-N----LLTYSTLIDVYSKGGLYKEAMQIFREFKQA----GLKAD-VVLYSALI 516 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li 516 (820)
.+|.+ |++++|+..|++.++..... + ..+++.+...|.+.|++++|+..|++.++. +..+. ...+..++
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 88888888887765431000 1 356777888888888888888888887653 11111 23566677
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003433 517 DALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~ 536 (820)
..+...|++++|+..|++.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 77788899999999999887
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=105.41 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=108.1
Q ss_pred cCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 347 GAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLV 426 (820)
Q Consensus 347 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~ 426 (820)
.|++++|++.|++..+.... +...|..+...|.+.|++++|++.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 46788888888888765432 56778888888888888888888888888764 44677788888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003433 427 CKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG---GLYKEAMQIFREFKQA 503 (820)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 503 (820)
|++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887765 5567788888888888888888888888887753 34567778888888888 8888888888888876
Q ss_pred CC
Q 003433 504 GL 505 (820)
Q Consensus 504 ~~ 505 (820)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=106.16 Aligned_cols=154 Identities=10% Similarity=-0.082 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003433 312 GGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM 391 (820)
Q Consensus 312 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 391 (820)
.|++++|++.|+++.+.. +.+...+..+...|.+.|++++|++.|++..+.... +...|..+...|...|++++|++.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 346888999999999999999999999999887533 678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 003433 392 FSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ---GKYDEVRRMFEQMKAD 468 (820)
Q Consensus 392 ~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 468 (820)
|++..+.. +.+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+... |+.++|.+.+++.++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5567889999999999999999999999998765 56788899999999999 9999999999998876
Q ss_pred C
Q 003433 469 C 469 (820)
Q Consensus 469 ~ 469 (820)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=96.78 Aligned_cols=120 Identities=9% Similarity=-0.041 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCC-HH
Q 003433 301 TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQ-----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN-VV 370 (820)
Q Consensus 301 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 370 (820)
++..+..+|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|+..|++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44445555555 55655555555554321000 1345556666666666666666666665542 11111 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLD------RVSYNTVLSIYAKLGRFEEALL 425 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d------~~~~~~li~~~~~~g~~~~A~~ 425 (820)
.+..++.++...|++++|+..|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 45555556666677777777776665 3 221 12233444444 4566655555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-07 Score=93.04 Aligned_cols=102 Identities=13% Similarity=-0.001 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSII 551 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 551 (820)
+...+..+...+.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..++++++. .| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4556677777777888888888888887776533 6777778888888888888888888888764 33 455777778
Q ss_pred HHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 552 DAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 552 ~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
.++...|++++|+..++++++..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 88888888888888888887776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9e-06 Score=83.05 Aligned_cols=135 Identities=9% Similarity=0.058 Sum_probs=68.6
Q ss_pred HcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 416 KLGRF-EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGK----------YDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 416 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
+.|.+ ++|+.+++.++... +.+..+|+.--..+...+. +++++.+++.++... +-+..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34443 36677777666554 4445555554444333332 445555555555432 33455555555555
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 485 SKGG--LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL-VESAVSLLDEMTKEGIRPNVVTYNSIIDAF 554 (820)
Q Consensus 485 ~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 554 (820)
.+.| .+++++.+++.+.+..++ |...|+.-...+...|. ++++++.++++++..+. |...|+.....+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 5554 255555555555555443 55555555555555555 35555555555554322 444554444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.1e-08 Score=88.33 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=94.3
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++++. +.|+ ...+..++..+...|++++|...|++++..+|.+..++.++...+ ..|++++|+..|+++++++|
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4566554 5664 456788999999999999999999999999999888877776555 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
++ +..+..++.+|...|++++|.+.++++.+...
T Consensus 87 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 87 XE-PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred CC-chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 65 66789999999999999999999998877654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=82.53 Aligned_cols=170 Identities=12% Similarity=0.065 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 003433 280 FKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGG-LWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG-A-QMDLAFEI 356 (820)
Q Consensus 280 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~-g-~~~~A~~~ 356 (820)
.++|++++++++..... +..+|+.-..++...| .+++++.+++.++... +-+..+|+.-...+.+. + ++++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34555555555554322 3334444444444445 3566666666665543 23455555555555554 4 55666666
Q ss_pred HHHchhCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 003433 357 MAEMPAKNISPNVVTYSTMIDGYAKAGRLD--------DALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR-------FE 421 (820)
Q Consensus 357 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~-------~~ 421 (820)
++++.+...+ |..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence 6666655433 5555555544444444444 6666666666554 4455566655555555554 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003433 422 EALLVCKEMESSGIRKDAVTYNALLGGYGKQGK 454 (820)
Q Consensus 422 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 454 (820)
++++.+++++... +-|...|+.+-..+.+.|+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 6666666666554 4566666665555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.8e-07 Score=77.80 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+......|.+.|++++|++.|+++++.+ |.+..++..++.+|.+.|++++|+..|+++++.++. +..+|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD---PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 456667888888999999999999888874 455668888888899999999999999988887543 6788888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAV 269 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 269 (820)
+|...|++++|++.|++..+..+. +...+..+
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 899999999999999888874322 34444433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.9e-06 Score=85.08 Aligned_cols=91 Identities=18% Similarity=0.078 Sum_probs=41.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFLGI-GLDR----VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR-KD----AVTYNAL 445 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~~~-~~d~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l 445 (820)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|+..|+++.+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666554311 1111 11223444444445555555555555442111 11 1234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003433 446 LGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~ 466 (820)
...|...|++++|...|++++
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=99.77 Aligned_cols=117 Identities=10% Similarity=-0.053 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN----------------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd----------------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
.+++++|+..|++.+. +.|+ ..+|..++.+|.+.|++++|+..|+++++.+|.+..++..+.
T Consensus 160 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg 237 (336)
T 1p5q_A 160 EGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRG 237 (336)
T ss_dssp HTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3588899999999987 4454 478999999999999999999999999999999888877776
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHH-HHHHHHhhhh
Q 003433 687 MGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGA-QLVVLEGKRR 742 (820)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 742 (820)
..+ ..|++++|+..|+++++++|.+ ...+..++.++.+.|++++| ..+++.+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 238 EAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 6889999999999999999965 67799999999999999999 4456665443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-06 Score=81.72 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYA 415 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~ 415 (820)
.+..+...+.+.|++++|++.|++.. .++...|..+...|.+.|++++|++.|++..+.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34456666677777777777777664 3466677777777777777777777777776654 445666777777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 416 KLGRFEEALLVCKEMESSGIRKD----------------AVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
..|++++|+..|++..+.. +.+ ...+..+..+|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777776543 222 256666667777777777777777776664
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=9.3e-06 Score=82.98 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=82.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC----HHHHHHH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGI-DQD----IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN----VVTYSTM 375 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 375 (820)
+..+...|++++|..++++..+... .++ ...+..+...+...|++++|+..|++....... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4556677777777777777766421 111 112334555555566667777776666553211 12 2246666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 003433 376 IDGYAKAGRLDDALNMFSEMKFL-----GIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMESS----GIRKD-AVTYNA 444 (820)
Q Consensus 376 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 444 (820)
...|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|+..+++.++. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666665521 10111 124455555566666666666555554321 11111 344555
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 003433 445 LLGGYGKQG-KYDEVRRMFEQM 465 (820)
Q Consensus 445 li~~~~~~g-~~~~A~~~~~~m 465 (820)
+..+|.+.| .+++|.+.|++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 555555555 245555555544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-06 Score=83.53 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFK---QAGLK-A--DVVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-V 544 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~-p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~ 544 (820)
+++.+...|...|++++|...|++.. +.... + ...+|..++..|.+.|++++|+..+++.++. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 44444445555555555555554443 11100 0 0134445555555555555555555554431 11111 3
Q ss_pred HHHHHHHHHHhhcCchhhh-HHhHHHHhhh
Q 003433 545 VTYNSIIDAFGRSATTECT-VDDVERDLGK 573 (820)
Q Consensus 545 ~~~~~ll~~~~~~g~~~~a-~~~~~~~l~~ 573 (820)
.+|..+..+|.+.|+.++| ...+++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3455555555555555555 4445555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-06 Score=81.57 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
+..+...+...|++++|+..|++.. .++...+..+...|.+.|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3444555556666666666665542 3455555556666666666666666665555443 3445555555555566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 452 QGKYDEVRRMFEQMKADCVSPN----------------LLTYSTLIDVYSKGGLYKEAMQIFREFKQA 503 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 503 (820)
.|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|...|++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666665555432 111 134444555555555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=83.70 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=91.4
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 632 VFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 632 ~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|++++. +.|+ ...+..++..+.+.|++++|...|++++..+|.+..++..+...+ ..|++++|+..|+++++++|
T Consensus 6 ~l~~al~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 6 TLAMLRG--LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ---CCTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHc--CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4444443 5564 445778889999999999999999999999999888877766555 68999999999999999999
Q ss_pred CcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 710 STASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 710 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
.+ +..+..++.+|...|++++|.+.++.+.+...
T Consensus 84 ~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 84 NE-PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp TC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 65 66789999999999999999999998877654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-06 Score=78.18 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG 487 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 487 (820)
..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...|++..+.. +.+...+..+..+|...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 333444444444444444444443332 2234444444444444444444444444444331 22333444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 003433 488 GLYKEAMQIFREFKQ 502 (820)
Q Consensus 488 g~~~~A~~~~~~m~~ 502 (820)
|++++|...|+++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444444
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.2e-05 Score=78.95 Aligned_cols=177 Identities=8% Similarity=0.038 Sum_probs=127.5
Q ss_pred HHHHHcCCCHH-HHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHH
Q 003433 163 LRELGNRGEWS-KAIQCFAFAVKREERKNDQGKLASAMISILGRLGK----------VDLAKNIFETALNEGYGNTVYAF 231 (820)
Q Consensus 163 ~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~ 231 (820)
+....+.|.+. +|+++++.++..+ |.+..+++.-..++...+. +++++.+++.++...+. +..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHH
Confidence 33444566665 7999999999885 5555677666555555544 67888999999887544 88899
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 232 SALISAYGRSGY--CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVD-FKHVVEIFDDMLRNGVQPDRITFNSLLAV 308 (820)
Q Consensus 232 ~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 308 (820)
+.-..++.+.|+ +++++++++++.+...+ |..+|+.-.-.+...| . ++++++.++++++..+. |...|+.....
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~-~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAA-VAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 988888888884 88999999999886654 8888888777777777 5 68899999999887655 77777766665
Q ss_pred HHhC--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 309 CSRG--------------GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKG 347 (820)
Q Consensus 309 ~~~~--------------g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 347 (820)
+.+. +.++++++.+...+... +-|...|+-+-..+.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 5544 34677777777777654 44666666554444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.4e-07 Score=81.27 Aligned_cols=99 Identities=9% Similarity=0.042 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc------hhHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA------SAFYN 717 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~------~~~~~ 717 (820)
..++..|++.|.+.|++++|++.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|+.. ...|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445778999999999999999999999999999888877776665 68999999999999999887542 23578
Q ss_pred HHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 718 ALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 718 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
.+|.+|...|++++|++.+++++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 89999999999999999999887543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-06 Score=85.60 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=123.2
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHH-------HHHHHhcCChHHHHHHHHHHHHc------------CCC---
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAM-------ISILGRLGKVDLAKNIFETALNE------------GYG--- 225 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~--- 225 (820)
+.+++.+|++.|.++...+ |.....|..+ ...+.+.++..++...+...+.. |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 5788889999999888875 4444577766 56666666666666666665541 100
Q ss_pred -----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC--
Q 003433 226 -----NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD-- 298 (820)
Q Consensus 226 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~-- 298 (820)
.-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+ ++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~-r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAE-RWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTT-CHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcC-CHHHHHHHHHHhhccC-CcccH
Confidence 013345567777888888888888888877643 44335555555667777 7888888887554421 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 299 RITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD--IFTYNTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 299 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
...+..+..++...|++++|+..|++.......|. ......+..++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23566677777778888888888877765332132 335566677777777777777777777765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.6e-07 Score=78.71 Aligned_cols=98 Identities=6% Similarity=-0.109 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...|..++..+.+.|++++|...|+++++.+|.+..+..++...+ ..|++++|+..++++++++|.+ ...|..++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence 446778899999999999999999999999999888777766555 6889999999999999999965 67799999999
Q ss_pred hhcCchHHHHHHHHHhhhhh
Q 003433 724 WHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~ 743 (820)
...|++++|...++++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999887765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-06 Score=77.26 Aligned_cols=129 Identities=15% Similarity=0.092 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 370 VTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGY 449 (820)
Q Consensus 370 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 449 (820)
..|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|+..+++..+.. +.+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566666777777777777777766653 3456667777777777777777777777776654 45566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 003433 450 GKQGKYDEVRRMFEQMKADCVSPNLLTYST--LIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 450 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 501 (820)
.+.|++++|...|+++.+.. +.+...+.. ++..+.+.|++++|+..+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776652 223444422 2333555666666666666543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.7e-06 Score=83.58 Aligned_cols=169 Identities=13% Similarity=0.025 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDR------VSYNTVLSIYAKLGRFEEALLVCKEMESSGIR---KD 438 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 438 (820)
....+...+..+...|++++|++.+.+..+.... .. ..+..+...+...|++++|+..+++..+.... +.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456667788899999999999999998876422 22 22445667778889999999999998764311 12
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 003433 439 --AVTYNALLGGYGKQGKYDEVRRMFEQMKADC-VSPN-----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA--- 507 (820)
Q Consensus 439 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--- 507 (820)
..+|+.+...|...|++++|...|++..+.. ..++ ..++..+...|.+.|++++|...+++.++.....
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 4588999999999999999999999987310 0122 2588899999999999999999999998642110
Q ss_pred --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 003433 508 --DVVLYSALIDALCKNGLVESA-VSLLDEMTK 537 (820)
Q Consensus 508 --~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 537 (820)
-..+|..+...|.+.|++++| ...|++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 167889999999999999999 777888774
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.51 E-value=7.1e-06 Score=81.30 Aligned_cols=51 Identities=8% Similarity=-0.032 Sum_probs=29.7
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHchh
Q 003433 311 RGGLWEAARNLFNEMVHRGIDQDIFTYNTL-------LDAICKGAQMDLAFEIMAEMPA 362 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~m~~ 362 (820)
..++...|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+..-..
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~ 75 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ 75 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777777777777653 2345666666 4555555555555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.50 E-value=8.7e-07 Score=90.01 Aligned_cols=93 Identities=15% Similarity=0.009 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+..+...+.+.|++++|+..|+.++... +.+..++..++.+|.+.|++++|+..++++++..+ .+..++..+..+|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3334444444444444444444444432 22233444444444444444444444444444321 1344444444444
Q ss_pred HhcCChhHHHHHHHHHH
Q 003433 239 GRSGYCQEAISVFNSMK 255 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~ 255 (820)
...|++++|+..|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 44444444444444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=8.4e-07 Score=80.19 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=64.8
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
++.+..+...+.+.|++++|++.|++++..+ |.+..++..++.+|...|++++|+..|+++++..+. +..+|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 3445556666777777777777777777663 444556666777777777777777777777665433 556666777
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (820)
.+|.+.|++++|+..|++..+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.7e-06 Score=71.47 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
+..+...|...|++++|..+|+++.+... .+..++..+...|...|++++|...|+++.
T Consensus 46 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 46 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333333333333333333333221 133333333333444444444444444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-07 Score=95.85 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 003433 170 GEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALI 235 (820)
Q Consensus 170 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li 235 (820)
+++++|++.|+...... +.....+..++..|.+.|++++|+..|++++....... ..+|..+.
T Consensus 127 ~~~~~A~~~~~~a~~~~---p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK---LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEECCCCGGGCCHHHH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34555666665554432 33445677788888888888888888888877643321 45666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLW 315 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 315 (820)
.+|.+.|++++|+..|++.++.... +...|..+..++...| ++++|+..|+++++.... +...+..+..++.+.|+.
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVN-DFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654322 4556666666666666 666666666666654322 445555566666666666
Q ss_pred HHH-HHHHHHHH
Q 003433 316 EAA-RNLFNEMV 326 (820)
Q Consensus 316 ~~A-~~~~~~~~ 326 (820)
++| ..+|..|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555 33444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.3e-06 Score=71.21 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFK 501 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~ 501 (820)
++..+...|...|++++|...|+++.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33333333444444444444444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.2e-07 Score=77.80 Aligned_cols=95 Identities=11% Similarity=-0.045 Sum_probs=82.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc
Q 003433 648 FSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (820)
Q Consensus 648 ~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (820)
+..++..+.+.|++++|...|+++++.+|.+...+..+...+ ..|++++|+..++++++++|.+ ...+..|+.+|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence 556778889999999999999999999999888877765555 5889999999999999999965 66799999999999
Q ss_pred CchHHHHHHHHHhhhhh
Q 003433 727 GQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 727 g~~~~A~~~~~~~~~~~ 743 (820)
|++++|...++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.8e-07 Score=81.69 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (820)
+...+..++..|.+.|++++|++.|+++++.+|.+..++.++...+ ..|++++|+..|+++++++|.+ ...|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 4566889999999999999999999999999998888777766555 6889999999999999999965 7779999999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+.|++++|.+.++++.+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHccCHHHHHHHHHHHHHhCC
Confidence 9999999999999999887654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=83.06 Aligned_cols=26 Identities=8% Similarity=-0.137 Sum_probs=12.3
Q ss_pred HHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 548 NSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 548 ~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
..+..++...|++++|+..++++++.
T Consensus 151 ~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 151 RGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34444444445555555444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-06 Score=81.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=76.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003433 416 KLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDV-YSKGGLY--KE 492 (820)
Q Consensus 416 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 492 (820)
..|++++|+..+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665543 4456666666667777777777777777665542 3355566666666 6667776 77
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 493 AMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 493 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
|...|+++.+..+. +...|..+...|...|++++|+..|+++++.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777765432 5666777777777777777777777777764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.5e-06 Score=83.13 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=93.1
Q ss_pred HcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhc
Q 003433 167 GNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE----G-YGNTVYAFSALISAYGRS 241 (820)
Q Consensus 167 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~ 241 (820)
...|++++|.+.++..... +.....++..++..+...|++++|...|++++.. + ......++..+...|...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH---PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTS---TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 4578888888855554332 2345567788888888888888888888887652 1 112345677777788888
Q ss_pred CChhHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRY----NLKP--NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGV-QPD----RITFNSLLAVCS 310 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~----~~~p--~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~ 310 (820)
|++++|.+.|++..+. +-.+ ....+..+...+...| ++++|...+++.+.... ..+ ..++..+...+.
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888888776542 1011 1234555666666666 67777777666653210 001 122345555556
Q ss_pred hCCCHHHHHHHHHHHHH
Q 003433 311 RGGLWEAARNLFNEMVH 327 (820)
Q Consensus 311 ~~g~~~~A~~~~~~~~~ 327 (820)
..|++++|...+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 66666666666555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-06 Score=71.93 Aligned_cols=60 Identities=20% Similarity=0.071 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 536 (820)
.+..+...|...|++++|...+++..+.... +...|..+...|...|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333333333344444444444333332211 23333334444444444444444444443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.9e-06 Score=73.04 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
..+..+...|...|++++|...|++.
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333333333333333333333333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=76.04 Aligned_cols=100 Identities=10% Similarity=-0.092 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDM 722 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 722 (820)
+...+..++..+...|++++|...|++++..+|.+..+...+...+ ..|++++|+..++++++++|.+ ...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHH
Confidence 5778899999999999999999999999999998887776665555 6889999999999999999965 6779999999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|...|++++|...++++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999998877654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-06 Score=81.42 Aligned_cols=123 Identities=6% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA-YGRSGYC 244 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~ 244 (820)
+...|++++|+..|+.++... +.+..++..++.+|...|++++|...|+++.+... .+...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCc
Confidence 345677888888888877764 44456777788888888888888888888877643 366777777777 7777887
Q ss_pred --hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Q 003433 245 --QEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG 294 (820)
Q Consensus 245 --~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g 294 (820)
++|+..|+++.+.... +...+..+...+...| ++++|...|+++++..
T Consensus 96 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN-EITALMLLASDAFMQA-NYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhC
Confidence 8888888887764322 5667777777777788 7888888888877753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.5e-06 Score=72.31 Aligned_cols=60 Identities=15% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003433 406 SYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMK 466 (820)
Q Consensus 406 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 466 (820)
.+..+...+...|++++|+..+++..+.. +.+...+..+...|.+.|++++|...|++..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333334444444444443333322 2223333334444444444444444444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.7e-06 Score=73.15 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQM 465 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m 465 (820)
..+..+..+|.+.|++++|.+.|++.
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33333333344444444444444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-06 Score=77.61 Aligned_cols=98 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 438 DAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALID 517 (820)
Q Consensus 438 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 517 (820)
+...+..+...+.+.|++++|...|++.+... +.+...|..+..+|...|++++|+..|++.++.++. +...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 34555666667777777777777777766542 345666677777777777777777777777665433 5566666777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003433 518 ALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~ 537 (820)
+|...|++++|+..|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=9.3e-06 Score=70.77 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|+.++... +.+..++..++.++.+.|++++|+..|+++++..+. +..+|..+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3456667778888899999999998888874 445568888888888899999999999888887543 677888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
.+|...|++++|+..|++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 8888888888888888888763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-05 Score=88.03 Aligned_cols=175 Identities=10% Similarity=0.054 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 003433 489 LYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL----------VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSA 558 (820)
Q Consensus 489 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 558 (820)
..++|++.++++++.+++ +...|+.-..++...|+ ++++++.++++++...+ +..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345667777777666544 55666665555555555 66666666666654211 3445555444444444
Q ss_pred chhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHH
Q 003433 559 TTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHK 638 (820)
Q Consensus 559 ~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~ 638 (820)
.. ++++++++++++++
T Consensus 122 ~~----------------------------------------------------------------~~~~el~~~~k~l~ 137 (567)
T 1dce_A 122 EP----------------------------------------------------------------NWARELELCARFLE 137 (567)
T ss_dssp SC----------------------------------------------------------------CHHHHHHHHHHHHH
T ss_pred cc----------------------------------------------------------------cHHHHHHHHHHHHh
Confidence 11 23456667777776
Q ss_pred CCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCchhHHHHHHHhcc---------------ccchHHHHHHHHH
Q 003433 639 LKIKPNVVTFSAILNACSRCN-SFEDASMLLEELRLFDNQVYGVAHGLLMGY---------------RDNIWVQALSLFD 702 (820)
Q Consensus 639 ~~~~Pd~~~~~~ll~a~~~~g-~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~A~~~~~ 702 (820)
...+ |..+|+.-..++.+.| .++++.++++++.+.+|.++.+++.....+ ..+.+++|.+.++
T Consensus 138 ~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~ 216 (567)
T 1dce_A 138 ADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQ 216 (567)
T ss_dssp HCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHH
T ss_pred hccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHH
Confidence 3322 6667777777788888 889999999999999999888877643221 1267899999999
Q ss_pred HHhhcCCCcchhHHHHHHHHHhhcCchHH
Q 003433 703 EVKLMDSSTASAFYNALTDMLWHFGQKRG 731 (820)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 731 (820)
++++.+|++ ...|+.+.+++.+.|++++
T Consensus 217 ~ai~~~P~~-~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 217 NAFFTDPND-QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHCSSC-SHHHHHHHHHHSCCCCCSC
T ss_pred HHHhhCCCC-ccHHHHHHHHHhcCCCccc
Confidence 999999976 5669999999999998666
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00013 Score=78.95 Aligned_cols=169 Identities=9% Similarity=-0.053 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 003433 407 YNTVLSIYAKLGRFEEALLVCKEMESSGI-RKDA----VTYNALLGGYGKQGKYDEVRRMFEQMKA----DCVSPN-LLT 476 (820)
Q Consensus 407 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~ 476 (820)
+..|+..|.+.|++++|.+.+..+...-- ..+. .+.+.+...+...|+.++|..++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666666666666666655432100 0111 1223333344455677777777766543 222222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC-C-C--HH
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQA--GL--KA-DVVLYSALIDALCKNGLVESAVSLLDEMTKE--GIR-P-N--VV 545 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~ 545 (820)
+..|...|...|++++|..+++++... +. .+ ...+|..++..|...|++++|..++++.+.. .+. | . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777776532 11 11 2456777777788888888888887776542 111 1 1 13
Q ss_pred HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 546 TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+..+...+...|++++|...+.+++....
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 455556666777888888777777665443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.3e-06 Score=83.50 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
..|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 344444444455555555555555444431 223444445555555555555555555555443322 344444444444
Q ss_pred HHcCCHHHHH
Q 003433 520 CKNGLVESAV 529 (820)
Q Consensus 520 ~~~g~~~~A~ 529 (820)
...|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=72.32 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCC--cchhHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSS--TASAFYNALTD 721 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 721 (820)
...+..++..+...|++++|...|+++.+.+|.+..+...+...+ ..|++++|+..++++++.+|. + ...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence 445778889999999999999999999998888777666655544 578999999999999999996 5 677999999
Q ss_pred HHhhc-CchHHHHHHHHHhhhhh
Q 003433 722 MLWHF-GQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 722 ~~~~~-g~~~~A~~~~~~~~~~~ 743 (820)
+|.+. |++++|.++++.+.+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999998876654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=75.52 Aligned_cols=97 Identities=9% Similarity=-0.044 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-------hhH-----HHHHHHhcc-ccchHHHHHHHHHHHhhc------
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQ-------VYG-----VAHGLLMGY-RDNIWVQALSLFDEVKLM------ 707 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~-----~~~~~~~~~-~~~~~~~A~~~~~~~~~~------ 707 (820)
.+...++.+.+.|++++|...|+++++.+|. +.. ++.+....+ ..|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 4567778888999999999999999988887 333 444444333 568889999999998888
Q ss_pred -CCCcchhHH----HHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 708 -DSSTASAFY----NALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 708 -~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
+|++ ...| +.++.+|...|++++|...++++.+...
T Consensus 93 ~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 93 LNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp TTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9965 5567 8999999999999999999999987654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=83.30 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDA 553 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~ 553 (820)
..|..+..+|.+.|++++|+..+++.++... .+...|..+..+|...|++++|+..|++.++. .| +..++..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 4556666666677777777777776666543 25666666666777777777777777776653 23 34455566666
Q ss_pred HhhcCchhhhH
Q 003433 554 FGRSATTECTV 564 (820)
Q Consensus 554 ~~~~g~~~~a~ 564 (820)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 66655555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=70.03 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--AD----VVLYSA 514 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~~ 514 (820)
.+..+...+.+.|++++|+..|++.++.. +.+...|+.+..+|.+.|++++|++.|++.++.+.. .+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44455555666666666666666655542 334555556666666666666666666655542211 11 134555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+..++...|++++|++.|++.++. .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666666677777777777766652 3454443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-05 Score=65.92 Aligned_cols=99 Identities=14% Similarity=0.062 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+...|++++|++.|+.++... +.+..++..++.++...|++++|...++++.+... .+...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 3456667777888888888888888888764 34455777788888888888888888888877643 3677788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.++...|++++|.+.|++..+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888888887643
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-05 Score=64.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGK 451 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 451 (820)
+..+...+...|++++|+..|++..... +.+...+..+...|...|++++|...+++..+.. +.+...+..+..+|.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444443332 2233444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 003433 452 QGKYDEVRRMFEQMKA 467 (820)
Q Consensus 452 ~g~~~~A~~~~~~m~~ 467 (820)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-05 Score=72.66 Aligned_cols=99 Identities=18% Similarity=0.008 Sum_probs=84.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALI 235 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 235 (820)
.+.+..+...+.+.|++++|++.|++++... +.+..++..++.+|.+.|++++|+..|+++++.... +..+|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4557778888999999999999999999874 455678889999999999999999999999887543 688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC
Q 003433 236 SAYGRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~~~ 258 (820)
.+|.+.|++++|+..|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=9.6e-06 Score=70.17 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=82.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+.+.|++++|+..|+++++.. |.+..++..++.++...|++++|+..|+++++..+. +..++..+..+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 45567778889999999999999999874 555678889999999999999999999999987544 78889999999
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 003433 238 YGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~ 257 (820)
|.+.|++++|+..|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=71.10 Aligned_cols=96 Identities=14% Similarity=0.018 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+.+.|++++|+..|++++..+ |.+..++..++.++.+.|++++|+..|++++..++. +...+..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 345556777888888888888888888774 445567778888888888888888888888877543 6677788888
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 003433 237 AYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~ 256 (820)
+|...|++++|+..|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-05 Score=66.51 Aligned_cols=99 Identities=16% Similarity=0.100 Sum_probs=74.7
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN--TVYAFSA 233 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ 233 (820)
.+.+..+...+...|++++|+..|++++... +.+..++..++.++...|++++|...|+++++.. +. +..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 4556667777888888888888888888764 3345577778888888888888888888887763 33 5777888
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhCC
Q 003433 234 LISAYGRS-GYCQEAISVFNSMKRYN 258 (820)
Q Consensus 234 li~~~~~~-g~~~~A~~~~~~m~~~~ 258 (820)
+..++.+. |++++|++.|++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888877643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.8e-06 Score=75.90 Aligned_cols=100 Identities=10% Similarity=-0.117 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhc------------------CCchhHHHHHHHhcc-ccchHHHHHHHHHHHh
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLF------------------DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVK 705 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~ 705 (820)
...+...++.+.+.|++++|...|.+++.. ++....+..++...+ ..|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345778889999999999999999999876 444445555554444 6889999999999999
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 706 LMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
+++|.+ ...|..+|.+|...|++++|...++++.+....
T Consensus 91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 91 KREETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHSTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred hcCCcc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 999965 667999999999999999999999998877543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-06 Score=93.97 Aligned_cols=110 Identities=8% Similarity=-0.065 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPN----------------VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLL 686 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd----------------~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 686 (820)
.+++++|+..|++.++ +.|+ ...|..++.+|.+.|++++|+..|+++++.+|.+...++.+.
T Consensus 281 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g 358 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358 (457)
T ss_dssp TTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3588899999999987 3443 477999999999999999999999999999999888777776
Q ss_pred hcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHH
Q 003433 687 MGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLV 735 (820)
Q Consensus 687 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 735 (820)
..+ ..+++++|+..|+++++++|++ ...+..++.++.+.|++++|.+.
T Consensus 359 ~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 359 EAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 5889999999999999999965 67799999999999999988754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.16 E-value=3e-05 Score=68.42 Aligned_cols=98 Identities=15% Similarity=0.024 Sum_probs=76.6
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
+++.+..+...+...|++++|+..|..++... +.+..++..++.++...|++++|...|+++++.... +..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 45667777888888888888888888888774 444567788888888888888888888888876533 67788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 003433 235 ISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~ 256 (820)
..+|...|++++|+..|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888887765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=68.35 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK--AD----VVLYS 513 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~----~~~~~ 513 (820)
..|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|+++.+.... ++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555566666666666666666655542 334555666666666666666666666666543211 11 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 514 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDA 553 (820)
Q Consensus 514 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 553 (820)
.+...|...|++++|.+.|+++.+. .|+...+..+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 6777777777777777777777663 3455444444433
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-05 Score=68.64 Aligned_cols=114 Identities=18% Similarity=0.131 Sum_probs=89.4
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSAL 234 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 234 (820)
..+.+..+...+...|++++|++.|+.+++..+.......++..++.++...|++++|+..++++++... .+..++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHH
Confidence 3556777888899999999999999999987522111156888899999999999999999999988743 368889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVI 270 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 270 (820)
..+|...|++++|+..|++..+.... +...+..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEALR 140 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHH
Confidence 99999999999999999999874322 344444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=5.4e-05 Score=65.93 Aligned_cols=99 Identities=11% Similarity=-0.058 Sum_probs=78.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT---VYAFSAL 234 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 234 (820)
.+..+...+...|++++|++.|+.++...+..+....++..++.++.+.|++++|...|+++++..+. + ..++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 44556777888999999999999998875433322257778889999999999999999999886433 4 6778888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 003433 235 ISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 235 i~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
..+|.+.|++++|+..|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999999988864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=65.87 Aligned_cols=99 Identities=16% Similarity=-0.014 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 437 KDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 437 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 512 (820)
.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+...|...|++++|+..+++..+.... +...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 34566666777777777777777777777664 344 466667777777777777777777777665432 56677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
..+..+|...|++++|...|++.++.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-06 Score=73.01 Aligned_cols=86 Identities=10% Similarity=-0.008 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHhhc---CCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHH
Q 003433 658 CNSFEDASMLLEELRLF---DNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 658 ~g~~~eA~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
.|++++|+..|+++++. +|.+..+..++...+ ..|++++|+..++++++.+|++ ...+..++.+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777766 355444444444433 4667777777777777777755 566788888888888888888
Q ss_pred HHHHHhhhhhh
Q 003433 734 LVVLEGKRRQV 744 (820)
Q Consensus 734 ~~~~~~~~~~~ 744 (820)
.+++++.+...
T Consensus 82 ~~~~~al~~~p 92 (117)
T 3k9i_A 82 ELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 88887766543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-05 Score=67.88 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 372 YSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEM 430 (820)
Q Consensus 372 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~ 430 (820)
|..+...+...|++++|+..|++..+.. +.+...+..+...|...|++++|...++++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444444332 223334444444444444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.5e-06 Score=90.89 Aligned_cols=114 Identities=8% Similarity=-0.060 Sum_probs=95.0
Q ss_pred hhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHH
Q 003433 621 RCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQAL 698 (820)
Q Consensus 621 ~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~ 698 (820)
...+++++|++.|++.++ +.|+ ..+|..++.+|.+.|++++|.+.|+++++.+|.+.....++...+ ..|++++|+
T Consensus 17 ~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345688999999999988 5664 778999999999999999999999999999999888777776655 689999999
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHH--HhhcCchHHHHHHHH
Q 003433 699 SLFDEVKLMDSSTASAFYNALTDM--LWHFGQKRGAQLVVL 737 (820)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 737 (820)
..++++++++|++ ...+..++.+ +.+.|++++|.++++
T Consensus 95 ~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999965 5568888888 889999999999987
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=68.96 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=76.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCchh---HHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc--hhHHHHHHHH
Q 003433 649 SAILNACSRCNSFEDASMLLEELRLFDNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA--SAFYNALTDM 722 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 722 (820)
..++..+...|++++|...|+++...+|.+. .+...+...+ ..|++++|+..++++++.+|++. ...+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4566778889999999999999998877765 3444444333 67899999999999999998552 4568889999
Q ss_pred HhhcCchHHHHHHHHHhhhhhh
Q 003433 723 LWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 723 ~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+.|++++|..+++++.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999998876643
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00011 Score=79.72 Aligned_cols=200 Identities=7% Similarity=-0.033 Sum_probs=100.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCCh--------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQ--------------GKLASAMISILGRLGKVDLAKNIFETALNEGYG-N 226 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 226 (820)
-.+.+.+.|++++|++.|..+++......+. ..++..++..|.+.|++++|.+.+..+.+.-.. .
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3555777888889998888888764322211 112344555555555555555555444321000 0
Q ss_pred CH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCCCC
Q 003433 227 TV----YAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR----NGVQPD 298 (820)
Q Consensus 227 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~----~g~~p~ 298 (820)
+. .+.+.+...+...| +++.|..++++... .+..+.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~------------------------------------~~~~a~~~~~~~~~~~~~~~~~~~ 133 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPD------------------------------------SLDDQIFVCEKSIEFAKREKRVFL 133 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCS------------------------------------CHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred chHHHHHHHHHHHHHHhCCC------------------------------------CHHHHHHHHHHHHHHHHHhCccHH
Confidence 00 11222222222333 45555555544432 111111
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC----CCCCC
Q 003433 299 -RITFNSLLAVCSRGGLWEAARNLFNEMVHR--GI---DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK----NISPN 368 (820)
Q Consensus 299 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--g~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~p~ 368 (820)
..++..|...+...|++++|..+++++... +. .....++..++..|...|++++|..++++.... +..+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 213 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQ 213 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchH
Confidence 334555566666666666666666655432 11 111345666666666666666666666654421 11111
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 369 --VVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 369 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
...+..+...+...|++++|...|.+..+
T Consensus 214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 23455556666667777777776666543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.9e-05 Score=69.00 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccc---------------cCChhHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003433 156 ADDYTFLLRELGNRGEWSKAIQCFAFAVKREER---------------KNDQGKLASAMISILGRLGKVDLAKNIFETAL 220 (820)
Q Consensus 156 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 220 (820)
.+.+......+.+.|++++|+..|..++..-.. .+....++..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667888899999999999999999886110 13344678888888999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003433 221 NEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 221 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
+.++ .+..+|..+..+|...|++++|+..|++..+.
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 8753 37888888899999999999999999888874
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.9e-06 Score=89.71 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHH
Q 003433 171 EWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNT--------------VYAFSALIS 236 (820)
Q Consensus 171 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~ 236 (820)
++++|++.|+...... +.....+..++..|.+.|++++|+..|+++++...... ..+|..+..
T Consensus 249 ~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444332 23344666777777777888888877777766432211 344444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR 292 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~ 292 (820)
+|.+.|++++|+..|++.++.... +...|..+..++...| ++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMN-EFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHcc-CHHHHHHHHHHHHH
Confidence 444444444444444444432211 3334444444444444 44444444444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.01 E-value=6.1e-05 Score=67.22 Aligned_cols=102 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKA------D-----VVLYSALIDALCKNGLVESAVSLLDEMTKE-----GI 540 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~ 540 (820)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..|++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666666543221 2 237888888888888888888888888873 12
Q ss_pred CCCHH-HH----HHHHHHHhhcCchhhhHHhHHHHhhhhhhhh
Q 003433 541 RPNVV-TY----NSIIDAFGRSATTECTVDDVERDLGKQKESA 578 (820)
Q Consensus 541 ~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~ 578 (820)
.|+.. .| .....++...|++++|+..++++++..|+..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 67665 78 8889999999999999999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-05 Score=68.50 Aligned_cols=89 Identities=10% Similarity=0.044 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEA 247 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 247 (820)
..|++++|+..|++++..+...+.+..++..++.+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3678999999999999873222455678889999999999999999999999987544 688899999999999999999
Q ss_pred HHHHHHHHhC
Q 003433 248 ISVFNSMKRY 257 (820)
Q Consensus 248 ~~~~~~m~~~ 257 (820)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.1e-05 Score=70.28 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HH
Q 003433 476 TYSTLIDVYSKGGLYKEAMQIFREFKQAGLK-AD----VVLYSALIDALCKNGLVESAVSLLDEMTKE----GIRPN-VV 545 (820)
Q Consensus 476 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~ 545 (820)
++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|...+++..+. +..+. ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555554321000 01 234555555666666666666666655432 11111 22
Q ss_pred HHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 546 TYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
++..+...+...|++++|++.++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666666667777776666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2.3e-05 Score=69.81 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHH----------HHHHHHHHHhhcCCchhHHHHHHHhccc-c
Q 003433 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFE----------DASMLLEELRLFDNQVYGVAHGLLMGYR-D 691 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~----------eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 691 (820)
+.+++|++.+++.++ +.| +...|..++.++...|+++ +|+..|+++++++|+...+++++...+. .
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 467789999998887 566 5677888888888877654 6666666666666655555555544442 1
Q ss_pred -----------chHHHHHHHHHHHhhcCCC
Q 003433 692 -----------NIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 692 -----------~~~~~A~~~~~~~~~~~~~ 710 (820)
+++++|+..|+++++++|+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3556666666666666664
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=8e-05 Score=67.49 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC---hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----CH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND---QGKLASAMISILGRLGKVDLAKNIFETALNEGYG-N----TV 228 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~ 228 (820)
..+..+...+...|++++|++.|++++........ ...++..++..+...|++++|...++++...... . ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34566777788888888888888888765322111 1235667777788888888888888776543100 0 13
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 229 YAFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 229 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.++..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456666666777777777777766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=4.1e-05 Score=83.96 Aligned_cols=118 Identities=15% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555442 2334455555555555555555555555555443 3344455555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDV--YSKGGLYKEAMQIFR 498 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 498 (820)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555544431 1122223333322 444444555554444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.9e-05 Score=82.76 Aligned_cols=141 Identities=9% Similarity=-0.009 Sum_probs=98.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHC---CC---CCCH-HHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchh
Q 003433 518 ALCKNGLVESAVSLLDEMTKE---GI---RPNV-VTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKD 590 (820)
Q Consensus 518 ~~~~~g~~~~A~~~~~~m~~~---g~---~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~ 590 (820)
.+..+|++++|+.++++.++. -+ .|+. .+++.|..+|...|++++|..++++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------------- 376 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR--------------------- 376 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH---------------------
Confidence 355778888888888887642 12 2333 3788899999999999999876554
Q ss_pred hhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 003433 591 VQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLE 669 (820)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~ 669 (820)
|++++++.... -.|+ ..+++.|+..|..+|++++|..+|+
T Consensus 377 --------------------------------------aL~i~~~~lG~-~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~ 417 (490)
T 3n71_A 377 --------------------------------------MVDGYMKLYHH-NNAQLGMAVMRAGLTNWHAGHIEVGHGMIC 417 (490)
T ss_dssp --------------------------------------HHHHHHHHSCT-TCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------------------------HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455544321 2344 4559999999999999999999988
Q ss_pred HHhhcCCchhHHHHHHHhccccchHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhhh
Q 003433 670 ELRLFDNQVYGVAHGLLMGYRDNIWVQALSLFDEVKLMDSS--TASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 746 (820)
+++++ +++.+ +|+ .....++.|...+...|++++|+.++..+++....+
T Consensus 418 ~Al~i--------------------------~~~~l--G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 418 KAYAI--------------------------LLVTH--GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHH--------------------------HHHHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHH--------------------------HHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87631 22211 222 124456778888999999999999999887765443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.4e-05 Score=83.32 Aligned_cols=118 Identities=5% Similarity=-0.099 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKPNVV------------------TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHG 684 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd~~------------------~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 684 (820)
.+++++|+..|++.+. +.|+.. .|..++.+|.+.|++++|+..|+++++.+|.+..++..
T Consensus 192 ~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 269 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFR 269 (338)
T ss_dssp SSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3477889999999877 556654 67777788888888888888888888877777666666
Q ss_pred HHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh-hcCchHHHHHHHHHhhhhh
Q 003433 685 LLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW-HFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 685 ~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~ 743 (820)
+...+ ..|++++|+..|+++++++|.+ ...+..|+.+.. ..++.+++.++++++....
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 65554 5677888888888888888754 555777777633 3455667777776665443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=70.81 Aligned_cols=89 Identities=13% Similarity=-0.022 Sum_probs=73.8
Q ss_pred ccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-cc----------chHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 657 RCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RD----------NIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 657 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+.+.+++|++.++...+.+|.+...+.++...+ .. +.+++|+..|+++++++|+. ...|+.||.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 557899999999999999999988877665443 22 24679999999999999965 6679999999998
Q ss_pred cC-----------chHHHHHHHHHhhhhhhhh
Q 003433 726 FG-----------QKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 726 ~g-----------~~~~A~~~~~~~~~~~~~~ 746 (820)
.| ++++|.++|+++.+.+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 75 8999999999998876543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00013 Score=76.98 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=67.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHccc-------------ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREE-------------RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
.+..+...+.+.|++++|++.|+++++... ..+....++..++.+|.+.|++++|+..++++++...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 456677788888888888888888886211 0122334555666666666666666666666665432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
.+..+|..+..+|.+.|++++|++.|++..+.... +...+..+...+...
T Consensus 305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKI 354 (370)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Confidence 24556666666666666666666666665553211 333444444443333
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.7e-05 Score=65.70 Aligned_cols=93 Identities=13% Similarity=-0.012 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcc-----hhHHH
Q 003433 644 NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTA-----SAFYN 717 (820)
Q Consensus 644 d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~ 717 (820)
+...+..++..+...|++++|.+.|+++++.+|.+..+..++...+ ..|++++|+..++++++++|++. ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567888999999999999999999999999998887777666555 68899999999999999999651 34466
Q ss_pred HHHHHHhhcCchHHHHHHH
Q 003433 718 ALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 718 ~l~~~~~~~g~~~~A~~~~ 736 (820)
.++.++...|++++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7777777777777665544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00065 Score=75.80 Aligned_cols=173 Identities=8% Similarity=-0.017 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 003433 385 LDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGR----------FEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG- 453 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 453 (820)
-++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++++.+.. +.+..+|+.-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 456677777777664 3445566666666666666 888888888888766 677888888888888888
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---------
Q 003433 454 -KYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDALCKN--------- 522 (820)
Q Consensus 454 -~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 522 (820)
+++++++.++++++.. +-|..+|+.-...+.+.| .++++++.++++++.++. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6788999999888864 457788888877788888 888899998888887765 888888887777663
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 523 -----GLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 523 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
+.++++++.+++++.... -|...|..+...+.+.+..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 557899999999987532 256688888888888877555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00019 Score=75.60 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444444445555555555554444432 223444444444444444444444444444443221 333344444444
Q ss_pred HHcCCHH
Q 003433 520 CKNGLVE 526 (820)
Q Consensus 520 ~~~g~~~ 526 (820)
...++.+
T Consensus 352 ~~~~~~~ 358 (370)
T 1ihg_A 352 QKIKAQK 358 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4333333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=64.78 Aligned_cols=81 Identities=17% Similarity=0.100 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhh
Q 003433 663 DASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKR 741 (820)
Q Consensus 663 eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 741 (820)
+|...|+++++.+|.+..+...+...+ ..|++++|+..++++++.+|.. ...|..++.+|...|++++|...++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666655555544433 4566777777777777777754 56688999999999999999999988876
Q ss_pred hhh
Q 003433 742 RQV 744 (820)
Q Consensus 742 ~~~ 744 (820)
...
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.78 E-value=8e-05 Score=77.58 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+.+.|++++|+..|++++... +.+.. +...|+.+++...+. ..+|..+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~--------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM--------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH--------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh--------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 345667777888899999999998888763 22210 111222222221110 124555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLW 315 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~ 315 (820)
+|.+.|++++|+..|++.++... .+...|..+..++...| ++++|+..|+++++.... +...+..|... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g-~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELG-QMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT-CHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554321 14455555555555555 555555555555443211 22333333333 1233445
Q ss_pred HHHHHHHHHHHH
Q 003433 316 EAARNLFNEMVH 327 (820)
Q Consensus 316 ~~A~~~~~~~~~ 327 (820)
+.+..+|..|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00097 Score=58.85 Aligned_cols=110 Identities=12% Similarity=-0.058 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003433 419 RFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAM 494 (820)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 494 (820)
++++|++.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555555555555554 22222 4455555555555666666655543 55555556555555 55666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003433 495 QIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEG 539 (820)
Q Consensus 495 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 539 (820)
+.|++..+.| +...+..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666665543 45555556666655 566666666666666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=59.01 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...+..++..|...|++++|...|++++..+|.+..+...+...+ ..|++++|+..++++++++|.+ ...+..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 456778888999999999999999999988887776666555444 5788999999999999998865 66688888888
Q ss_pred hhcC
Q 003433 724 WHFG 727 (820)
Q Consensus 724 ~~~g 727 (820)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00018 Score=78.30 Aligned_cols=91 Identities=9% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHcCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHH
Q 003433 165 ELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVYAFS 232 (820)
Q Consensus 165 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~ 232 (820)
.+..+|++++|+.++++++.. +...+....+++.|+.+|..+|++++|+.++++++.. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355667777777777776652 2223444556677777777777777777777666532 1 111244566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 003433 233 ALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 233 ~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
.|...|...|++++|..+|++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666777777776666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0011 Score=58.60 Aligned_cols=110 Identities=11% Similarity=-0.050 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003433 279 DFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAF 354 (820)
Q Consensus 279 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~ 354 (820)
++++|+++|++..+.|. ++.. |...|...+.+++|.++|++..+.| +...+..|..+|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34455555555554441 1221 3344444444555555555555443 44444445555544 44555555
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 003433 355 EIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLG 399 (820)
Q Consensus 355 ~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 399 (820)
++|++..+.| +...+..|...|.. .+++++|+++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555544443 34444445445544 445555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00045 Score=57.94 Aligned_cols=91 Identities=20% Similarity=0.167 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-------HH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-------VV 545 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 545 (820)
+...+..+...+...|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|+++++. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4566777888888888899999888888876543 6788888888899999999999999998874 454 44
Q ss_pred HHHHHHHHHhhcCchhhhHHh
Q 003433 546 TYNSIIDAFGRSATTECTVDD 566 (820)
Q Consensus 546 ~~~~ll~~~~~~g~~~~a~~~ 566 (820)
.+..+..++...|+.++|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 666667777777777776553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=58.60 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=47.1
Q ss_pred CchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 676 NQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 676 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
|.+..+...+...+ ..|++++|+..|+++++++|.+ ...|..++.+|.+.|++++|.+.++++.+...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34444444433333 4566666666677777777754 55689999999999999999999998876543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0014 Score=52.42 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALIS 236 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 236 (820)
+.+..+...+...|++++|+..|++++... +.+..++..++.++.+.|++++|+..|+++.+..+ .+..++..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 345556666667777777777777776653 33344566667777777777777777777666532 24555665555
Q ss_pred HHHh
Q 003433 237 AYGR 240 (820)
Q Consensus 237 ~~~~ 240 (820)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00067 Score=57.56 Aligned_cols=79 Identities=14% Similarity=0.011 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003433 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (820)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (820)
+|++.|+.+++.. +.+..++..++.+|...|++++|+..|+++++..+ .+..+|..+..+|...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4667777777663 44456777788888888888888888888877643 3577778888888888888888888887
Q ss_pred HHh
Q 003433 254 MKR 256 (820)
Q Consensus 254 m~~ 256 (820)
..+
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.018 Score=56.38 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcc-----CCHHHHHHHHHHHhhcCCch-hHHHHHHHhcc-c-c
Q 003433 623 RQEILCILGVFQKMHKLKIKPN---VVTFSAILNACSRC-----NSFEDASMLLEELRLFDNQV-YGVAHGLLMGY-R-D 691 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd---~~~~~~ll~a~~~~-----g~~~eA~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~ 691 (820)
.....+|..++++.++ ++|+ ...|..|+..|.+. |+.++|+++|+++++++|+. ..+...+...+ . .
T Consensus 176 l~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 176 PDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred HHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 3456667777777777 6666 44577777777774 77777777777777777643 33333332222 2 4
Q ss_pred chHHHHHHHHHHHhhcCCC
Q 003433 692 NIWVQALSLFDEVKLMDSS 710 (820)
Q Consensus 692 ~~~~~A~~~~~~~~~~~~~ 710 (820)
++.++|...+++++..+|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 6667777777777766664
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0016 Score=69.63 Aligned_cols=91 Identities=7% Similarity=0.054 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHH---CCCCC---C-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHH
Q 003433 625 EILCILGVFQKMHK---LKIKP---N-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQA 697 (820)
Q Consensus 625 ~~~~Al~~~~~m~~---~~~~P---d-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 697 (820)
++++|+.++++.++ .-+.| + ..+++.|+.+|...|++++|..++++++++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------------- 369 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------------------- 369 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------------------
Confidence 56778888877764 11233 3 456999999999999999999999887621
Q ss_pred HHHHHHHhh-cCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 698 LSLFDEVKL-MDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 698 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
+++.+= ..| +....|+.|+.+|..+|++++|+.+++++.+.
T Consensus 370 ---~~~~lG~~Hp-~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 370 ---YSKHYPVYSL-NVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp ---HHHHSCSSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHcCCCCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 122211 122 23556999999999999999999999888654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=53.32 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 473 NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 473 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...+..+...|.+.|++++|+..|+++++.++. +...|..+..+|...|++++|++.|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666677777666666665433 455666666667777777777776666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.015 Score=59.39 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 003433 262 NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHR 328 (820)
Q Consensus 262 ~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 328 (820)
+..+|..+...+...| ++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 276 ~a~~~~alal~~l~~g-d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKG-KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444444343344 5555555555555542 44444444555555555555555555555553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00096 Score=54.65 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHhhcCCchhH-HHHHHHhcc-ccchHHHHHHHHHHHhhcCCCc
Q 003433 651 ILNACSRCNSFEDASMLLEELRLFDNQVYG-VAHGLLMGY-RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 651 ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
.+..+.+.|++++|.+.|+++++.+|.+.. +...+...+ ..|++++|+..|+++++++|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 344555666666666666666666665554 444433333 3556666666666666666644
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0022 Score=68.50 Aligned_cols=89 Identities=7% Similarity=-0.065 Sum_probs=63.9
Q ss_pred cCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHHHHHHHH
Q 003433 168 NRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVYAFSALI 235 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~li 235 (820)
..|++++|+.++++++.. +...+....+++.|+.+|..+|++++|+.++++++.. | .+....+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457788888888887763 3334445667788888888888888888888887642 2 112345677888
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 003433 236 SAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 236 ~~~~~~g~~~~A~~~~~~m~~ 256 (820)
..|...|++++|+.+|++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.001 Score=54.53 Aligned_cols=80 Identities=9% Similarity=0.128 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccccchHHHHHHH
Q 003433 623 RQEILCILGVFQKMHKLKIKP-NVV-TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYRDNIWVQALSL 700 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~P-d~~-~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 700 (820)
.+++++|+..|++.++ ..| +.. .+..++.+|...|++++|.+.|+++++.+|.+..+... +.+.+|...
T Consensus 13 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~a~~~ 83 (99)
T 2kc7_A 13 QGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------KMVMDILNF 83 (99)
T ss_dssp HTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHHHH
Confidence 3578899999999988 456 456 88899999999999999999999999999987665422 467888888
Q ss_pred HHHHhhcCCCc
Q 003433 701 FDEVKLMDSST 711 (820)
Q Consensus 701 ~~~~~~~~~~~ 711 (820)
|+++.+.+|.+
T Consensus 84 ~~~~~~~~p~~ 94 (99)
T 2kc7_A 84 YNKDMYNQLEH 94 (99)
T ss_dssp HCCTTHHHHCC
T ss_pred HHHHhccCccc
Confidence 88888777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0044 Score=66.25 Aligned_cols=94 Identities=11% Similarity=0.015 Sum_probs=53.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHc-----ccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCCHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKR-----EERKNDQGKLASAMISILGRLGKVDLAKNIFETALNE-----G--YGNTVY 229 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~ 229 (820)
.+..+.+.|++++|++++++++.. +...+....+++.++.+|...|++++|+.++++++.. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344455666777777777666642 2222333455666666666667777666666665431 1 111234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 003433 230 AFSALISAYGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 230 ~~~~li~~~~~~g~~~~A~~~~~~m~ 255 (820)
+++.|...|...|++++|+.+|++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 56666666666666666666666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0033 Score=67.22 Aligned_cols=91 Identities=9% Similarity=-0.087 Sum_probs=61.4
Q ss_pred HHHHhccCCHHHHHHHHHHHhhc-----CCchh---HHHHHHHhcc-ccchHHHHHHHHHHHhhc-----CCCc--chhH
Q 003433 652 LNACSRCNSFEDASMLLEELRLF-----DNQVY---GVAHGLLMGY-RDNIWVQALSLFDEVKLM-----DSST--ASAF 715 (820)
Q Consensus 652 l~a~~~~g~~~eA~~~~~~~~~~-----~~~~~---~~~~~~~~~~-~~~~~~~A~~~~~~~~~~-----~~~~--~~~~ 715 (820)
+..+.+.|++++|..+++++++. .+++. .+.+++...| .+|+|++|+.++++++++ ++++ ....
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667888888888777643 22222 2233344344 467788888888877652 3322 3556
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 716 YNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 716 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
|+.|+.+|..+|++++|+.+++++.+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 899999999999999999999887654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0086 Score=52.58 Aligned_cols=83 Identities=17% Similarity=0.064 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHhhcC-C-chhHHHHHHHhcc-ccchHHHHHHHH
Q 003433 628 CILGVFQKMHKLKIKPNVVTFSAILNACSRCN---SFEDASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLF 701 (820)
Q Consensus 628 ~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g---~~~eA~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~A~~~~ 701 (820)
.+.+.|.+....|. ++..+...+..++.+.+ ++++|+.+|+++.+.+ | ..-..++.+..++ +.+++++|++++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34556666655554 57777667888888887 6668888888888766 4 3344445554443 677888888888
Q ss_pred HHHhhcCCCc
Q 003433 702 DEVKLMDSST 711 (820)
Q Consensus 702 ~~~~~~~~~~ 711 (820)
+++++++|++
T Consensus 95 ~~lL~ieP~n 104 (152)
T 1pc2_A 95 RGLLQTEPQN 104 (152)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHhcCCCC
Confidence 8888888854
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.036 Score=56.64 Aligned_cols=73 Identities=15% Similarity=0.049 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTY 547 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 547 (820)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|+++.. +.|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 4456666666655655677777777777776654 5666666666666777777777777776666 35555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.17 Score=59.24 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 003433 303 NSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKA 382 (820)
Q Consensus 303 ~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 382 (820)
..++..+.+.|..++|.++.+.-. .-.....+.|++++|+++.+.+. +...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHc
Confidence 555666666777777665542111 11334456677777777765442 556777777777777
Q ss_pred CCHHHHHHHHHHHH
Q 003433 383 GRLDDALNMFSEMK 396 (820)
Q Consensus 383 g~~~~A~~~~~~m~ 396 (820)
|+++.|.+.|.++.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 77777777776553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0073 Score=59.09 Aligned_cols=86 Identities=16% Similarity=0.028 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHhhcCCch-hH-HHHHHHhccc------cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc-CchH
Q 003433 660 SFEDASMLLEELRLFDNQV-YG-VAHGLLMGYR------DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF-GQKR 730 (820)
Q Consensus 660 ~~~eA~~~~~~~~~~~~~~-~~-~~~~~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 730 (820)
...+|..++++++++||.. .+ ....+..-|. .|+.++|+++|+++++++|+.+...+..+++.|++. |+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5678899999999999983 22 2222222232 489999999999999999976678899999999985 9999
Q ss_pred HHHHHHHHhhhhhhh
Q 003433 731 GAQLVVLEGKRRQVW 745 (820)
Q Consensus 731 ~A~~~~~~~~~~~~~ 745 (820)
+|.+++++++.-...
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999998876554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0061 Score=49.14 Aligned_cols=52 Identities=6% Similarity=-0.146 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhhh
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
..++|..+++++++++|++ +.....||.++++.|++++|+.+|+++.+....
T Consensus 24 ~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 24 MTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577888888888888855 566888888888888888888888887766543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0095 Score=52.32 Aligned_cols=86 Identities=7% Similarity=-0.030 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-c---cchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHhhcCchHHHH
Q 003433 659 NSFEDASMLLEELRLFDNQVYGVAHGLLMGY-R---DNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQ 733 (820)
Q Consensus 659 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 733 (820)
+.+..+++.|.+....++.+..+..++.+.+ + ..+.++|+.+++++++.+ |......+..|+-.|++.|++++|+
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 3456677778877777777777777776655 2 447889999999999998 6455777888999999999999999
Q ss_pred HHHHHhhhhhh
Q 003433 734 LVVLEGKRRQV 744 (820)
Q Consensus 734 ~~~~~~~~~~~ 744 (820)
++++.+++...
T Consensus 92 ~y~~~lL~ieP 102 (152)
T 1pc2_A 92 KYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCC
Confidence 99999887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.055 Score=63.55 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 373 STMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQ 452 (820)
Q Consensus 373 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 452 (820)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555555666666666665442110 1122344567777776664322 3566777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLL 532 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 532 (820)
|+++.|.+.|.++.. |..+...|...|+.+...++.+.....|. ++.-..+|.+.|++++|+++|
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776532 23344444445555555555444444331 122233345555555555554
Q ss_pred HHH
Q 003433 533 DEM 535 (820)
Q Consensus 533 ~~m 535 (820)
.++
T Consensus 760 ~~~ 762 (814)
T 3mkq_A 760 IKS 762 (814)
T ss_dssp HHT
T ss_pred HHc
Confidence 443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.07 Score=43.89 Aligned_cols=70 Identities=13% Similarity=0.055 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccc----cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 155 GADDYTFLLRELGNRGEWSKAIQCFAFAVKREER----KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 155 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
+++.+..|...+.+.+++..|+..|+.+++.... ......++..++.++.+.|+++.|...++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4667778889999999999999999988875321 123455778888888888888888888888887643
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.067 Score=42.89 Aligned_cols=63 Identities=24% Similarity=0.041 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 003433 194 KLASAMISILGRLGK---VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRY 257 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 257 (820)
.++..++.++...++ .++|..+++++++.++. ++.++..+...+.+.|++++|+..|+++.+.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444443333 45566666665555432 4555555555566666666666666665543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.12 Score=42.42 Aligned_cols=70 Identities=7% Similarity=-0.091 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 508 DVVLYSALIDALCKNGLVESAVSLLDEMTKEG------IRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 508 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+..-+..|+..+.+.|+++.|...|+++++.- -.+...++..|..++.+.|++++|+..++++++..|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 33444455666666666666666666655420 01233456666666666666666666666666655543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.96 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=44.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL 389 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 389 (820)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.++-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3445555555554433 1344555555555555555555555555442 223333444445554444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003433 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVC 427 (820)
Q Consensus 390 ~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~ 427 (820)
++-+.....|- ++.-...+.-.|+++++.++|
T Consensus 81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHH
Confidence 44333333320 222233333445555555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.91 E-value=6.6 Score=45.39 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=9.7
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 003433 413 IYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~ 432 (820)
+|+..|+.....+++..+.+
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 44455555444445555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.46 Score=42.75 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=23.5
Q ss_pred HHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003433 344 ICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEM 395 (820)
Q Consensus 344 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 395 (820)
..+.|+++.|.++.+++. +...|..|.+.....|+++-|.+.|.+.
T Consensus 15 AL~lg~l~~A~e~a~~l~------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN------DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC------CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHhC------CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344555555555544431 4445555555555555555555555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.86 E-value=4.9 Score=42.73 Aligned_cols=60 Identities=7% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHhhhhhhhhhhhhccchhhhhcchhHHHHHHHHHHHHHH
Q 003433 715 FYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENVWSESCLDLHLMSSGAARAMVHAWLLNIH 776 (820)
Q Consensus 715 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~~w~~~~~ 776 (820)
.+..|+..+.- ..++++.++..|...|.-.+-.-...|-|++....+....+..|-.++.
T Consensus 361 ~l~~la~lL~l--~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~ 420 (445)
T 4b4t_P 361 TLLRLNELLDL--TESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD 420 (445)
T ss_dssp EHHHHHHHHTS--CHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------------------
T ss_pred eHHHHHHHhCc--CHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHH
Confidence 36667777654 4678888888887666543322222344554444455566778865554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.083 Score=44.51 Aligned_cols=83 Identities=6% Similarity=-0.071 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHhcc----ccchHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHhhcCchHHHHHHH
Q 003433 662 EDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMD-SSTASAFYNALTDMLWHFGQKRGAQLVV 736 (820)
Q Consensus 662 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 736 (820)
..+++.|.+....++.+..+..++.+++ ...+..+++.+++.+++.+ |.........|+-.+++.|+|++|++++
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444444333333334444443333 1234445666666666655 4334555666666777777777777776
Q ss_pred HHhhhhhh
Q 003433 737 LEGKRRQV 744 (820)
Q Consensus 737 ~~~~~~~~ 744 (820)
+..++...
T Consensus 98 ~~lL~~eP 105 (126)
T 1nzn_A 98 RGLLQTEP 105 (126)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 66655443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.4 Score=41.40 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=78.1
Q ss_pred CCChhhHHHHHHHHHcCCCH------HHHHHHHHHHHHcccccC--C---hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 153 LCGADDYTFLLRELGNRGEW------SKAIQCFAFAVKREERKN--D---QGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 153 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
+.++|.|-..+..+-+.|+. ++.+++|+++...-+... . ...++...+. +...++.++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 45688888888888888988 889999999987532110 0 1111211121 2344788888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003433 222 EGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDA 272 (820)
Q Consensus 222 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 272 (820)
..-.- ..+|......-.+.|++..|.+++.+.+..+.+| .......|..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHh
Confidence 53332 7778877788888888888888888888776664 3334444443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.32 Score=40.91 Aligned_cols=82 Identities=18% Similarity=0.072 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHhhcC-C-chhHHHHHHHhcc-ccchHHHHHHHHH
Q 003433 629 ILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFED---ASMLLEELRLFD-N-QVYGVAHGLLMGY-RDNIWVQALSLFD 702 (820)
Q Consensus 629 Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~e---A~~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~~~A~~~~~ 702 (820)
+.+.|.+....|. ++..+--.+..++.+.....+ ++.+++++...+ | .....++.+..++ +.|++.+|+..++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3344554444343 566666678888888887766 999999988765 3 3344444444444 7899999999999
Q ss_pred HHhhcCCCc
Q 003433 703 EVKLMDSST 711 (820)
Q Consensus 703 ~~~~~~~~~ 711 (820)
.+++.+|.+
T Consensus 99 ~lL~~eP~n 107 (126)
T 1nzn_A 99 GLLQTEPQN 107 (126)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 999999965
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=2.8 Score=35.38 Aligned_cols=138 Identities=11% Similarity=0.108 Sum_probs=66.1
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003433 310 SRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDAL 389 (820)
Q Consensus 310 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 389 (820)
.-.|.+++..++..+..+. .+..-||-.|--....-+-+...++++.+-+. .|.. ..|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 3456666666666666653 24455555554444444555555555544332 1211 122222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003433 390 NMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADC 469 (820)
Q Consensus 390 ~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 469 (820)
..+-.+ ..+..-+..-++.+...|+-|+-.+++..+... .++++.....+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222221 112222333444555556666555555554322 24555555556666666666666666666655555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.43 E-value=6.1 Score=45.63 Aligned_cols=351 Identities=12% Similarity=0.050 Sum_probs=201.0
Q ss_pred hHHHHHHHHHcCCCHHHH-HH-HHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKA-IQ-CFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEG--YGNTVYAFSA 233 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A-~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 233 (820)
....+.+++.+.|--.+. +. ...|.-+. .+....-....-+....|+.++++.+++..+..+ -.+.+..-..
T Consensus 341 ~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~----~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAl 416 (963)
T 4ady_A 341 TAVSVANGFMHAGTTDNSFIKANLPWLGKA----QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL 416 (963)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHCHHHHHHC----CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhcchhhhhcc----chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHH
Confidence 345578889888854333 22 22465543 2333444455556778899999999999887532 1223344455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHH--HH-
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYNL-------KPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRIT--FN- 303 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~--~~- 303 (820)
+.-+....|..+++++++.......- .+.+..-.++.-+++-.|-.-+++.+.+..++... +..+ ..
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~Aa 493 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAA 493 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 55667777777788888877664211 01122233343344434422367778887777642 2222 22
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHchhCCCCCCHH-HHH---HHH
Q 003433 304 -SLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAI--CKGAQMDLAFEIMAEMPAKNISPNVV-TYS---TMI 376 (820)
Q Consensus 304 -~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~---~li 376 (820)
+|...+...|+-+....++..+.+. .+..+...++-++ .-.|+.+.+..+++.+... .|.. -|. ++.
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alg 567 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 3344456778888888888887764 2344444444444 4678888888888887764 2332 233 344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-
Q 003433 377 DGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKY- 455 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~- 455 (820)
-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .+.+.--.++.-+....|..
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 56788899888888999888752 2233333333334555677677777777666544 34444333444444444443
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--C-------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCH
Q 003433 456 DEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG--G-------LYKEAMQIFREFKQA-GLKADVVLYSALIDALCKNGLV 525 (820)
Q Consensus 456 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g-------~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~ 525 (820)
.++..++..+.. .+|..+-..-+.++... | ++...++.+...... .-.++...-..+..+....|.-
T Consensus 646 ~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 646 QSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 678888888875 34555544344343322 2 345555544444432 2223455556666777777654
Q ss_pred H
Q 003433 526 E 526 (820)
Q Consensus 526 ~ 526 (820)
.
T Consensus 723 n 723 (963)
T 4ady_A 723 N 723 (963)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.11 E-value=2.5 Score=35.69 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN 364 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 364 (820)
..+...+..+..+|.-|+-.+++..+... .+++....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33344444444555555555544443221 23344444445555555555555555554444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.93 E-value=1.6 Score=37.67 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 003433 436 RKDAVTYNALLGGYGKQGKY------DEVRRMFEQMKADCVSPNLL----TYSTLID---VYSKGGLYKEAMQIFREFKQ 502 (820)
Q Consensus 436 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~ 502 (820)
+.|..+|-..+....+.|+. ++.+++|++.... ++|+.. .|--|-- .+...++.++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44566666666666666666 6777777776654 444321 1111111 11234788889999998876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 503 AGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 503 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
.+-+- ...|......-.++|++..|.+++.+.+..+..| ...+.+.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 53333 7778777888889999999999999998876553 334444333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.63 E-value=1.4 Score=37.67 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHhccCCH---HHHHHHHHHHhhcCCc-hhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 642 KPNVVTFSAILNACSRCNSF---EDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~---~eA~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|+..+--.+..++.++... .+++.+++++...+|. .-..++.+..++ +.|++.+|+++.+.+++.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34544444455555555432 3445555554433331 112222222222 34444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.13 E-value=0.0073 Score=62.88 Aligned_cols=218 Identities=14% Similarity=0.208 Sum_probs=140.9
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSA 233 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 233 (820)
.+|..|..++....+.|.+++-++.+..+.+.. . ...+=+.|+-+|++.+++.+-.+++. .||+.-...
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-k---e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~ 149 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-R---ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQ 149 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-C---STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-c---ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHH
Confidence 356778888888889999998888876655442 1 12344678888998888776443321 245545566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC--------------------CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 234 LISAYGRSGYCQEAISVFNSMKRYN--------------------LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~~~--------------------~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
+++-+...|.++.|.-+|..+.... -.-+..||-.+-.+|...+ ++.-|.-.--.++-.
T Consensus 150 VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~-EfrLAqicGLniIvh 228 (624)
T 3lvg_A 150 VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK-EFRLAQMCGLHIVVH 228 (624)
T ss_dssp HHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC-TTTTTTHHHHHHHCC
T ss_pred HHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch-HHHHHHHhcchhccc
Confidence 7777777777777777766543211 0235678888888888888 777665544444421
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhC-CCC------
Q 003433 294 GVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAK-NIS------ 366 (820)
Q Consensus 294 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~------ 366 (820)
+| -...|+..|-..|.+++-+.+++..+... ......|+-|.-.|+|- +.++-.+.++..-.+ +++
T Consensus 229 ---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 229 ---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp ---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred ---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 11 22345666778888998888888876431 34677888888888876 445555555443322 111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 367 PNVVTYSTMIDGYAKAGRLDDALN 390 (820)
Q Consensus 367 p~~~~~~~li~~~~~~g~~~~A~~ 390 (820)
-....|.-++-.|.+-.+++.|..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhhHHHHHHHHhcchhHHHHHH
Confidence 123468888888888888887754
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.66 E-value=1.4 Score=49.88 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCCCCCHH---
Q 003433 232 SALISAYGRSGY-CQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-------NGVQPDRI--- 300 (820)
Q Consensus 232 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-------~g~~p~~~--- 300 (820)
..|+..+...|+ ++.|+.+|+++.+....-+......++..+...+.+--+|.+++.+.++ .-...+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555555 4678888888776432212222223333333322122345555544432 11111111
Q ss_pred -------HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHch
Q 003433 301 -------TFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361 (820)
Q Consensus 301 -------~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 361 (820)
....-...|...|+++.|+.+-++.+... +.+-.+|..|..+|.+.|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12222345667889999999988888763 4457788999999999999999998888875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.33 E-value=3.3 Score=46.88 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhC------CCCC-CHH
Q 003433 194 KLASAMISILGRLGK-VDLAKNIFETALNEGYGNTVYAFSALISAYGRSGY-CQEAISVFNSMKRY------NLKP-NLV 264 (820)
Q Consensus 194 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~------~~~p-~~~ 264 (820)
.+...++..+...|+ .+.|..+|+++.+..+..++.....++..+.+.++ --+|++++.+..+. ...+ +..
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 455677777777777 58899999999887543333333444544444432 22455555544321 1111 211
Q ss_pred ----------HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 003433 265 ----------TYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMV 326 (820)
Q Consensus 265 ----------~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 326 (820)
..+.-..-+...| +++.|+++-++.+...+ -+-.+|..|..+|...|+++.|+-.+..+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~-~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRG-DYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccC-cHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111223355677 99999999999998633 368899999999999999999998887763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.68 E-value=1.6 Score=36.89 Aligned_cols=68 Identities=7% Similarity=-0.034 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhccCCH---HHHHHHHHHHhhcCCc-hhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCC
Q 003433 642 KPNVVTFSAILNACSRCNSF---EDASMLLEELRLFDNQ-VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDS 709 (820)
Q Consensus 642 ~Pd~~~~~~ll~a~~~~g~~---~eA~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~ 709 (820)
.|...|--.+..++.+.... .+|+.+++++...++. .-..++.+..++ +.|++.+|+++.+.+++.+|
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34444433455555555433 3455555555443331 122222222222 34444444444444444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.17 E-value=1.4e-05 Score=82.73 Aligned_cols=205 Identities=11% Similarity=0.122 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSI 413 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~ 413 (820)
..+|..|..++.+.+++.+|++.|-+.. |...|..+|.+..+.|.+++-+.++...++. ..+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHH
Confidence 4467777888777777777777664332 5566777888888888888888877666554 2333444677778
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003433 414 YAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEA 493 (820)
Q Consensus 414 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 493 (820)
|++.++..+-.+++ . .||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHH
Confidence 88888765433322 1 35665666777778888888877777765432 33455566677777776
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhh
Q 003433 494 MQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGK 573 (820)
Q Consensus 494 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~ 573 (820)
.+.-++. .++.||-.+-.+|...+.+.-|...--.++-. +| -...|+.-|-..|.+++-+.+++.+++.
T Consensus 190 VdaArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 190 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 6543322 36778988889999999888776655555421 22 2334667788889999988888887754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=8.4 Score=40.06 Aligned_cols=118 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred cCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003433 168 NRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV-DLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQE 246 (820)
Q Consensus 168 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 246 (820)
..|+.+.|.+.+..++..-....-.. .. ...+ .....-+++.. ..+...++..+...|++++
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~-~~---------~~~w~~~~r~~l~~~~-------~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDD-LR---------DFQFVEPFATALVEDK-------VLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGG-GT---------TSTTHHHHHHHHHHHH-------HHHHHHHHHHHHHTTCHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCC-CC---------chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCHHH
Confidence 45788899999988887421111000 00 0111 11122222221 1244556777778888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 247 AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFNS 304 (820)
Q Consensus 247 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 304 (820)
|+..++.+.....- +...|..+|.++.+.| +..+|++.|+.+.+ .|+.|...+-..
T Consensus 190 a~~~l~~~~~~~P~-~E~~~~~lm~al~~~G-r~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 190 VIAELEALTFEHPY-REPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 88887777654322 6777888888888888 78888888877653 478887766543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.36 E-value=6.4 Score=40.95 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003433 478 STLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYNS 549 (820)
Q Consensus 478 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 549 (820)
..++..+...|+.++|...+..+....+ .+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455666667777777777777666543 3666777777777777777777777776543 377777665433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=45 Score=36.84 Aligned_cols=361 Identities=11% Similarity=0.033 Sum_probs=187.8
Q ss_pred cchHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHH
Q 003433 139 DVSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFET 218 (820)
Q Consensus 139 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 218 (820)
...+...+...+.-+.....-..-+..+.+.++|...+.+|.. .+.+...-.....+....|+-.+|......
T Consensus 55 ~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~ 127 (618)
T 1qsa_A 55 AVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKE 127 (618)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 3444445544432221112223366777788888887775542 234444555677778888998888887777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC---
Q 003433 219 ALNEGYGNTVYAFSALISAYGRSGYCQE--AISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN--- 293 (820)
Q Consensus 219 ~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~--- 293 (820)
+-..|.. ....+..|+..+.+.|.+.. ...-++.+...| +...-..++..+ . . +.....+.+..+.+.
T Consensus 128 lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~-~~~~~a~~~~al~~~p~~ 200 (618)
T 1qsa_A 128 LWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-A-DYQTIASAIISLANNPNT 200 (618)
T ss_dssp HHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-G-GGHHHHHHHHHHHHCGGG
T ss_pred HHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-H-HHHHHHHHHHHHHhChHh
Confidence 7665533 45567788888887776544 333333333322 222222222211 0 0 111111111111111
Q ss_pred ------CCCCCHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHc
Q 003433 294 ------GVQPDRITFNS---LLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNT----LLDAICKGAQMDLAFEIMAEM 360 (820)
Q Consensus 294 ------g~~p~~~~~~~---ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~----ll~~~~~~g~~~~A~~~~~~m 360 (820)
.+.++...-.. .+.-+.+ .+.+.|...+....+.. ..+...... ++..+...+...++...+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~ 278 (618)
T 1qsa_A 201 VLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (618)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhc
Confidence 01222221111 1222223 37889999998886543 223333322 232333345356677777765
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 361 PAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAV 440 (820)
Q Consensus 361 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 440 (820)
.... .+.....-.+....+.|+++.|...|..|.... .......--+..++...|+.++|..+|..+.+. .
T Consensus 279 ~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--- 349 (618)
T 1qsa_A 279 IMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--- 349 (618)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---
T ss_pred cccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---
Confidence 5443 233333344445567799999999998886532 123444455667778889999999999988741 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSP---NLLT---YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSA 514 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 514 (820)
+|..++. ..+.|..-.. ......+ .... ...-+..+...|....|...+..+.+. .+......
T Consensus 350 ~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~ 418 (618)
T 1qsa_A 350 GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ 418 (618)
T ss_dssp SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHH
Confidence 2333221 1222221000 0000000 1111 112344566788899998888887764 24444445
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 003433 515 LIDALCKNGLVESAVSLLDEM 535 (820)
Q Consensus 515 li~~~~~~g~~~~A~~~~~~m 535 (820)
+.......|..+.++....+.
T Consensus 419 la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 419 LARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChHHHHHHHHHH
Confidence 555566778888777655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.17 E-value=33 Score=34.34 Aligned_cols=168 Identities=14% Similarity=0.075 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMF----SEMKFLGIGLDRVSYNTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~d~~~~~~li 411 (820)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++- +-+.+.++++|......|+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455666778888888888765422 1234455555544443 4444556677777666666
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 412 SIYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 412 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
..+.....-+ .=..+.++++ +.| ..-|+.....+...|.+.+++.+|...|- . |..+...++..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6665544311 1112222221 112 23466777777888888888888877763 1 2233334554443333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
...+...+ .|...-.+ +--|.-.++...|..+|+...+
T Consensus 178 ~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 33222111 11111122 2235566677777776666553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.73 E-value=15 Score=44.45 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNL----LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALI 516 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 516 (820)
-|.-++..+.+.|.++.+.++-...++.....+. ..|..+...+...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3455555566666666666555554432211111 1355556666666666666666655554322 234444455
Q ss_pred HHHHHcCC------------HHHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHhhcCchhhhHHh-HHHHh
Q 003433 517 DALCKNGL------------VESAVSLLDEMTK-E-GIRPNVVTYNSIIDAFGRSATTECTVDD-VERDL 571 (820)
Q Consensus 517 ~~~~~~g~------------~~~A~~~~~~m~~-~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~-~~~~l 571 (820)
..+|..|. .++..+++..-.+ . .+.....-|..|-.-....|++..|-.+ |+++.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 54444443 3344444433211 1 1111112344444445677787776654 44433
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=84.36 E-value=34 Score=33.90 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHH
Q 003433 336 TYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNM----FSEMKFLGIGLDRVSYNTVL 411 (820)
Q Consensus 336 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~d~~~~~~li 411 (820)
.|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+++++......|+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445566667778888888887654321 24455665555443 44445567777777777777
Q ss_pred HHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 412 SIYAKLGRFE-EALLVCKEME----SSG--IRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVY 484 (820)
Q Consensus 412 ~~~~~~g~~~-~A~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 484 (820)
..+.....-+ .=.+++++++ +.| ..-|+..+..+...|.+.|++.+|+..|-.- -.-|...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHH
Confidence 6665533211 1122223322 222 1236777888888888888888888766521 011344444443333
Q ss_pred Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 485 SKG---GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 485 ~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
... |...++--+.- . .+-.|.-.|+...|..+|+...+
T Consensus 176 ~~~~~~~~~~e~dlf~~--------------R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 176 LCQVDDIEDSTVAEFFS--------------R-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHTTCCCHHHHHHHHH--------------H-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHH--------------H-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 332 43333221111 1 12235566777777777776653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.63 E-value=15 Score=32.42 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=35.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCC------hhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKND------QGKLASAMISILGRLGKVDLAKNIFETALN 221 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 221 (820)
-++.+...+.|+.|+-+.+.++......++ -..++..+++++...|++..|...|++++.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566667777777766665543221111 112445667777777777777777777643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.61 E-value=11 Score=31.89 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.|+..+--.+..++.+..+ ..+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444433 234555555554443211233334444455555555555555555554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.36 E-value=23 Score=42.77 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
...++..+...+.++.|.++..+... +......++.++..+|++++|...|.++.. |...+....
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-------DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC-------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh-------
Confidence 33455556666666666655444321 112224466667777777777777766522 111000000
Q ss_pred HhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhC
Q 003433 239 GRSGYCQEAISVFNSMKRYN--LKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDR----ITFNSLLAVCSRG 312 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~ 312 (820)
..... +..+.... ...-..-|..++..+-+.+ .++.+.++-...++....-+. ..|..+.+.+...
T Consensus 880 ---~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~-~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l 951 (1139)
T 4fhn_B 880 ---AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEES-AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 951 (1139)
T ss_dssp ---SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhcc----cccccccccccccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh
Confidence 00000 00011000 0112234555556666666 566666665555543211121 1355566666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHchh-C-CCCCCHHHHHHHHHH
Q 003433 313 GLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQM------------DLAFEIMAEMPA-K-NISPNVVTYSTMIDG 378 (820)
Q Consensus 313 g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~------------~~A~~~~~~m~~-~-g~~p~~~~~~~li~~ 378 (820)
|++++|...+-.+...... ......|+..+|..|+. ++..+++....+ . .+.....-|..|-.-
T Consensus 952 ~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ 1029 (1139)
T 4fhn_B 952 GKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSW 1029 (1139)
T ss_dssp CCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhh
Confidence 6666666666666554322 34445555555554433 333344432111 1 011112335666666
Q ss_pred HHHcCCHHHHHHH-HHHHH
Q 003433 379 YAKAGRLDDALNM-FSEMK 396 (820)
Q Consensus 379 ~~~~g~~~~A~~~-~~~m~ 396 (820)
+...|++.+|-.+ |+.+.
T Consensus 1030 ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1030 RYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred hhccCChHHHHHHHHHHHH
Confidence 6777887766554 44443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.81 E-value=22 Score=30.44 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 471 SPNLLTYSTLIDVYSKGGL---YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 471 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
.++..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555556665543 345566666665544322233334455566667777777776666666
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.69 E-value=52 Score=34.71 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHH
Q 003433 443 NALLGGYGKQGKYDEVRRMFEQMKAD--CVSPN---LLTYSTLIDVYSKGGLYKEAMQIFREFKQ----AGLKAD--VVL 511 (820)
Q Consensus 443 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~ 511 (820)
..|...|...|++.+|..++..+... +.... ...+...+..|...+++..|..+++++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44666677777777777777766421 11111 23455556677777777777777776532 111112 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 512 YSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 512 ~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55666667777777777777766653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.00 E-value=54 Score=33.79 Aligned_cols=92 Identities=13% Similarity=-0.007 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHchhC--CCCCCHHHHHH--
Q 003433 304 SLLAVCSRGGLWEAARNLFNEMVHRGIDQD-----IFTYNTLLDAICKGAQMDLAFEIMAEMPAK--NISPNVVTYST-- 374 (820)
Q Consensus 304 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~-- 374 (820)
-|+..|...|++.+|.+++.++.+.--..| ..++..-+.+|...+++.++...+...... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777777777777766655310111 334455556666677777776666554321 11122221111
Q ss_pred --HHHHHH-HcCCHHHHHHHHHHH
Q 003433 375 --MIDGYA-KAGRLDDALNMFSEM 395 (820)
Q Consensus 375 --li~~~~-~~g~~~~A~~~~~~m 395 (820)
-.-.+. ..+++.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112234 566677776666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 820 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 0.002
Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 6/164 (3%)
Query: 302 FNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMP 361
+ +L V +++ A + + + L + +DLA +
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR-- 262
Query: 362 AKNISPNVV-TYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRF 420
A + P+ Y + + + G + +A + ++ S N + +I + G
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNI 321
Query: 421 EEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQ 464
EEA+ + ++ + A ++ L +QGK E +++
Sbjct: 322 EEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKE 364
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 820 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.23 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.48 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.45 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.44 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.28 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.22 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.12 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.05 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.04 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.94 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.88 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.45 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.31 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.32 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.89 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.83 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.25 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=4.3e-22 Score=212.26 Aligned_cols=383 Identities=15% Similarity=0.138 Sum_probs=318.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003433 162 LLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRS 241 (820)
Q Consensus 162 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 241 (820)
+...+.+.|++++|++.|+++++.. |.+..++..++.+|.+.|++++|+..|+++++..+ .+..+|..++.+|.+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE---PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKER 80 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhh
Confidence 5566788999999999999999874 55567889999999999999999999999998754 3788999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 003433 242 GYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNL 321 (820)
Q Consensus 242 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 321 (820)
|++++|+..+....+.... +...+..........+ ....+............. ...............+....+...
T Consensus 81 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAG-DMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccccccc-cccccccccccccccccc-cccccccccccccccchhhhhHHH
Confidence 9999999999999875433 4444444444444444 445555555555544333 455555666777888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 003433 322 FNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIG 401 (820)
Q Consensus 322 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (820)
+....... +.+...+..+...+...|++++|...+++..+.... +..+|..+...+...|++++|+..+++..... +
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 234 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-h
Confidence 98887764 446788888999999999999999999998876433 67789999999999999999999999998875 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 402 LDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLI 481 (820)
Q Consensus 402 ~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 481 (820)
.+...+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+.+.|++++|.+.++..... .+.+...+..+.
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHH
Confidence 677888889999999999999999999998876 567889999999999999999999999998776 366788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCc
Q 003433 482 DVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSIIDAFGRSAT 559 (820)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~ 559 (820)
..|.+.|++++|++.|++.++..+. +..+|..+...|.+.|++++|+..|+++++. .|+ ..+|..+..+|.+.||
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999887543 6788999999999999999999999999984 565 5588999988887774
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1e-21 Score=209.18 Aligned_cols=378 Identities=14% Similarity=0.123 Sum_probs=226.1
Q ss_pred HHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 273 CGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDL 352 (820)
Q Consensus 273 ~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 352 (820)
+.+.| ++++|++.|+++++.... +...+..+..+|.+.|++++|+..|+++++.. +.+..++..+..+|.+.|++++
T Consensus 9 ~~~~G-~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAG-DFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcC-CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 34445 555555555555543221 34445555555555555555555555555542 2234555555555555666666
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 353 AFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 353 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
|++.+......... +...+..........+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhc
Confidence 66555555544222 33333344444444444444444444433332 22333333444445555556666665555544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003433 433 SGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLY 512 (820)
Q Consensus 433 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 512 (820)
.. +.+...+..+...+...|++++|...+++.++.. +-+...|..+...|...|++++|...+++....+. .+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHH
Confidence 33 3445556666666666666666666666665542 23455666666666666666666666666665543 255566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhh
Q 003433 513 SALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDV 591 (820)
Q Consensus 513 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 591 (820)
..+...+.+.|++++|+..|+++++. .| +..+|..+..++...|++++|+.
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~-------------------------- 292 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAED-------------------------- 292 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHH--------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH--------------------------
Confidence 66666666677777777777666653 23 33456666666666665555443
Q ss_pred hhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 003433 592 QEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEEL 671 (820)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~ 671 (820)
.|++.... ...+...+..++..+.+.|++++|.+.|+++
T Consensus 293 ----------------------------------------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 331 (388)
T d1w3ba_ 293 ----------------------------------------CYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp ----------------------------------------HHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ----------------------------------------HHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444331 1225566778888889999999999999999
Q ss_pred hhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc
Q 003433 672 RLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (820)
++.+|++..+...+...+ ..|++++|+..|+++++++|++ +..|..||.+|.+.|+
T Consensus 332 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence 998888877776665555 6788999999999999999965 6679999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.7e-14 Score=146.23 Aligned_cols=245 Identities=11% Similarity=0.004 Sum_probs=163.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003433 445 LLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGL 524 (820)
Q Consensus 445 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 524 (820)
....+.+.|++++|+..|+++++.. +-+..+|..+..+|...|++++|...|++.++..+. +...|..++..|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence 4555666777777777777766652 334566666666777777777777777766665433 55666666666667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHH
Q 003433 525 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKV 604 (820)
Q Consensus 525 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (820)
+++|.+.++++... .|+................... ...
T Consensus 103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~----- 141 (323)
T d1fcha_ 103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGP----------------------------------SKR----- 141 (323)
T ss_dssp HHHHHHHHHHHHHT--STTTGGGCC-------------------------------------------------C-----
T ss_pred ccccccchhhHHHh--ccchHHHHHhhhhhhhhccccc----------------------------------chh-----
Confidence 77777766666653 2221110000000000000000 000
Q ss_pred HHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHH
Q 003433 605 FGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLK-IKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAH 683 (820)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~-~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 683 (820)
........+...+|++.|++.+... -..+..++..++..+...|++++|+..|++++..+|.+..++.
T Consensus 142 -----------~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 210 (323)
T d1fcha_ 142 -----------ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 210 (323)
T ss_dssp -----------TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------hHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchh
Confidence 0000112235667888998887632 2235677889999999999999999999999999998887776
Q ss_pred HHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhhh
Q 003433 684 GLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQV 744 (820)
Q Consensus 684 ~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 744 (820)
.+...+ ..|++++|+..|+++++++|++ +..|..||.+|.+.|++++|+..++++++...
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p 271 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALELQPGY-IRSRYNLGISCINLGAHREAVEHFLEALNMQR 271 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHHhhcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 665555 6899999999999999999965 66799999999999999999999999887644
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.8e-13 Score=137.68 Aligned_cols=273 Identities=14% Similarity=0.057 Sum_probs=159.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
.......+.+.|++++|+..|+.+++.+ |.+..++..++.++...|++++|...|+++++..+. +...|..++..|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 97 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF 97 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccc
Confidence 3456777889999999999999999885 555678999999999999999999999999987543 788999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 003433 239 GRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAA 318 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 318 (820)
...|++++|++.++++.... |+............... +.......+..+...+.+.+|
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~a 155 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGA--------------------GLGPSKRILGSLLSDSLFLEV 155 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHH
T ss_pred cccccccccccchhhHHHhc--cchHHHHHhhhhhhhhc--------------------ccccchhhHHHHHHhhHHHHH
Confidence 99999999999999988643 32111000000000000 000000011112222334445
Q ss_pred HHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 319 RNLFNEMVHRGI-DQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKF 397 (820)
Q Consensus 319 ~~~~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 397 (820)
...|.++++... ..+..++..+...+...|++++|+..|++....... +..+|..+...|.+.|++++|++.|++..+
T Consensus 156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 234 (323)
T d1fcha_ 156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALE 234 (323)
T ss_dssp HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHH
Confidence 555555444321 123445555555555555555555555555443222 344555555555555555555555555554
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003433 398 LGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESS----------GIRKDAVTYNALLGGYGKQGKYDEVR 459 (820)
Q Consensus 398 ~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~li~~~~~~g~~~~A~ 459 (820)
.. +-+..++..+..+|.+.|++++|+..|++.++. ........|..+-.++...|+.+.+.
T Consensus 235 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 235 LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred Hh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 42 233445555555555556666665555554331 11233445555555555555555443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.4e-10 Score=117.91 Aligned_cols=131 Identities=6% Similarity=-0.010 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 441 TYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG-LYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 441 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|+..++..++..++ +..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 34444444555555555555555555542 233444555555555443 355555555555554433 455555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 520 CKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 520 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
.+.|++++|+..|+++++. .| +..+|..+..++.+.|++++|++.++++++..|
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p 177 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 177 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT
T ss_pred HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC
Confidence 5555555555555555553 22 344555555555555555555554444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=3.5e-11 Score=124.02 Aligned_cols=264 Identities=9% Similarity=-0.025 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 419 RFEEALLVCKEMESSGIRKDAVTYNALLGG----------YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGG 488 (820)
Q Consensus 419 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 488 (820)
..++|+++++++++.. +-+...|+..-.. +...|++++|+.+++..++.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 3467777777766544 3344445433222 233455788888898887763 446777777777777665
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHH
Q 003433 489 --LYKEAMQIFREFKQAGLKADVVLYSA-LIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVD 565 (820)
Q Consensus 489 --~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 565 (820)
++++|+..++++.+.... +...|.. ....+...|..++|+..++++++.+.. +...|..+..++.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 488999999999886543 5666544 446677789999999999998886432 66788889999999999998877
Q ss_pred hHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCC-C
Q 003433 566 DVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKP-N 644 (820)
Q Consensus 566 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~P-d 644 (820)
.+.++++..+..... ...+.. .+ ..+++...+.+.+. ..| +
T Consensus 200 ~~~~~~~~~~~~~~~---------------------~~~~~~-----l~----------~~~~a~~~~~~~l~--~~~~~ 241 (334)
T d1dcea1 200 QGRLPENVLLKELEL---------------------VQNAFF-----TD----------PNDQSAWFYHRWLL--GRAEP 241 (334)
T ss_dssp CCSSCHHHHHHHHHH---------------------HHHHHH-----HC----------SSCSHHHHHHHHHH--SCCCC
T ss_pred HHHHhHHhHHHHHHH---------------------HHHHHH-----hc----------chhHHHHHHHHHHH--hCcch
Confidence 666555554432111 011110 11 12236666777665 333 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...+..++..+...|+.++|...|.+....+|....+...+...+ ..|++++|+..+++++++||. ...+|+.|++.+
T Consensus 242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~~ 320 (334)
T d1dcea1 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSKF 320 (334)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHHH
Confidence 444566777777888889999999888888887776666655555 578889999999999999984 466788887766
Q ss_pred hh
Q 003433 724 WH 725 (820)
Q Consensus 724 ~~ 725 (820)
.-
T Consensus 321 ~~ 322 (334)
T d1dcea1 321 LL 322 (334)
T ss_dssp HH
T ss_pred hH
Confidence 53
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.9e-10 Score=113.67 Aligned_cols=233 Identities=10% Similarity=0.035 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 334 IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAG-RLDDALNMFSEMKFLGIGLDRVSYNTVLS 412 (820)
Q Consensus 334 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~d~~~~~~li~ 412 (820)
...++.+...+.+.+.+++|+++++++++..+. +...|+....++...| ++++|++.+++..+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 344555666666667777777777777765433 5556666666666655 3677777777766654 445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGL--- 489 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--- 489 (820)
.+.+.|++++|+..++++++.. +.+...|..+...+.+.|++++|++.|+++++.+ +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence 7777777777777777776655 5567777777777777777777777777777653 3356666666666555444
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhhc--Cchhhh
Q 003433 490 ---YKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP-NVVTYNSIIDAFGRS--ATTECT 563 (820)
Q Consensus 490 ---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~--g~~~~a 563 (820)
+++|++.+.++++..+. +...|+.+...+.. ...+++.+.++...+....+ +...+..++..|... +..+.+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 57788888887776543 67777766655443 34577777777776532222 344566666666433 444455
Q ss_pred HHhHHHHhh
Q 003433 564 VDDVERDLG 572 (820)
Q Consensus 564 ~~~~~~~l~ 572 (820)
...+.++++
T Consensus 277 ~~~~~ka~~ 285 (315)
T d2h6fa1 277 EDILNKALE 285 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1e-08 Score=105.65 Aligned_cols=274 Identities=11% Similarity=-0.002 Sum_probs=191.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC--hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--C---CCHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKND--QGKLASAMISILGRLGKVDLAKNIFETALNEGY--G---NTVYA 230 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~ 230 (820)
........+...|++++|+++|++++...+..+. ...++..++.++...|++++|+..|+++..... . ....+
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3444566678899999999999999886532221 134677788999999999999999998865311 1 12345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----CCCCH
Q 003433 231 FSALISAYGRSGYCQEAISVFNSMKRY----NLK--PN-LVTYNAVIDACGKGGVDFKHVVEIFDDMLRNG----VQPDR 299 (820)
Q Consensus 231 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g----~~p~~ 299 (820)
+..+...+...|++..|...+.+.... +.. +. ...+..+...+...| +++.+...+....... .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-RLDEAEASARSGIEVLSSYQPQQQL 172 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc-chhhhHHHHHHHHHHhhhhhhhhHH
Confidence 677788899999999999988876531 111 11 234556667778888 8999999998887542 22234
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCC---HH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRG--IDQ----DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPN---VV 370 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g--~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~ 370 (820)
.++..+...+...++...+...+.+..... ... ....+..+...+...|++++|...+++........+ ..
T Consensus 173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 252 (366)
T d1hz4a_ 173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 252 (366)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence 556666777788889988888887765431 111 133456667778888999999999888776433222 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 371 TYSTMIDGYAKAGRLDDALNMFSEMKF----LGIGLD-RVSYNTVLSIYAKLGRFEEALLVCKEMES 432 (820)
Q Consensus 371 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~d-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 432 (820)
.+..+...|...|++++|...++++.. .+..++ ..++..+...|.+.|++++|.+.+++.++
T Consensus 253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 253 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566678888889999999988887753 232332 34567777888888888888888877643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.5e-08 Score=104.24 Aligned_cols=270 Identities=10% Similarity=0.013 Sum_probs=170.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCC-CC----HHHHHHHH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQD----IFTYNTLLDAICKGAQMDLAFEIMAEMPAKNIS-PN----VVTYSTMI 376 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li 376 (820)
...+...|++++|++++++.++.....+ ...++.+...|...|++++|+..|++..+.... ++ ..++..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445667777777777777666431111 235556666777777777777777665532100 11 23455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 003433 377 DGYAKAGRLDDALNMFSEMKFL----GIGL---DRVSYNTVLSIYAKLGRFEEALLVCKEMESSG----IRKDAVTYNAL 445 (820)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~----~~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l 445 (820)
..+...|++..+...+.+.... +... ....+..+...+...|+++.+...+....... .......+..+
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6777778877777777765431 1111 12345556677778888888888887765432 12234555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 003433 446 LGGYGKQGKYDEVRRMFEQMKADC--VSPN----LLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKA---DVVLYSALI 516 (820)
Q Consensus 446 i~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li 516 (820)
...+...++..++...+.+..... .... ...+..+...+...|++++|...++...+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 677777888888887777654321 1111 2344556667778888888888888776543221 245566678
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----CCCCCCHH-HHHHHHHHHhhcCchhhhHHhHHHHhhhhh
Q 003433 517 DALCKNGLVESAVSLLDEMTK----EGIRPNVV-TYNSIIDAFGRSATTECTVDDVERDLGKQK 575 (820)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~ 575 (820)
..+...|++++|...+++++. .+..|+.. ++..+..+|.+.|++++|++.++++++...
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 888889999999988888763 24444443 677788888899999999888887776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=7.4e-09 Score=104.65 Aligned_cols=221 Identities=10% Similarity=0.029 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHcccccCChhHHHHHHHHHHH--------------hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 172 WSKAIQCFAFAVKREERKNDQGKLASAMISILG--------------RLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 172 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+++..+|++++...+ ....+|..-+..+- ..+..++|..+|+++++...+.+...|...+..
T Consensus 32 ~~Rv~~vyerAl~~~~---~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 32 TKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456677888877642 23335544444332 223457788888888865455567788888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAV-CSRGGLWE 316 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~ 316 (820)
+.+.|+++.|..+|+++.+.........|...+..+.+.| +++.|.++|+++++.+.. +...|...+.. +...|+.+
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~-~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-GIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHH
Confidence 8888888888888888887544334557888888888888 888888888888876543 33334333332 34567888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 317 AARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKN-ISPN--VVTYSTMIDGYAKAGRLDDALNMFS 393 (820)
Q Consensus 317 ~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~ 393 (820)
.|..+|+.+++. .+.+...|...++.+.+.|+++.|..+|++..... ..|+ ...|...+..-...|+.+.+.++++
T Consensus 187 ~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 187 VAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888775 34467778888888888888888888888876643 2222 3467777777777788888888877
Q ss_pred HHHHC
Q 003433 394 EMKFL 398 (820)
Q Consensus 394 ~m~~~ 398 (820)
++.+.
T Consensus 266 r~~~~ 270 (308)
T d2onda1 266 RRFTA 270 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77553
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=7.8e-10 Score=113.65 Aligned_cols=257 Identities=9% Similarity=-0.080 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHH----------HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 385 LDDALNMFSEMKFLGIGLDR-VSYNTVL----------SIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQG 453 (820)
Q Consensus 385 ~~~A~~~~~~m~~~~~~~d~-~~~~~li----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 453 (820)
.++|++++++..+. .|+. ..|+..- ..+...|++++|+.+++...+.. +.+...|..+..++...+
T Consensus 45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 35666666666554 2332 2332222 12344556888999999888765 667888888887777765
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003433 454 K--YDEVRRMFEQMKADCVSPNLLTYS-TLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVS 530 (820)
Q Consensus 454 ~--~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 530 (820)
+ +++|...+.++++.. +.+...+. .+...+...+.+++|+..++.+++.++. +...|+.+...+.+.|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 4 889999999988763 34566654 4456777889999999999999888764 88999999999999999998877
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhhhhhhhhhccCchhhhhhccchHHHHHHHHHHHH
Q 003433 531 LLDEMTKEGIRPNVVTYNSIIDAFGRSATTECTVDDVERDLGKQKESANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVA 610 (820)
Q Consensus 531 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (820)
.+++..+. .|+. ..+...+...+..+++...+.+++...+.... .+..+...+.
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~-----------------~~~~l~~~~~---- 253 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF-----------------RCELSVEKST---- 253 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS-----------------SCCCCHHHHH----
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhh-----------------HHHHHHHHHH----
Confidence 76665542 2222 22334455667777888877777766554321 1111122222
Q ss_pred HHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHH
Q 003433 611 EKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGL 685 (820)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 685 (820)
..++..+|+..|.+... ..|+ ..++..++.+|...|++++|.++|+++.+.||.....+..+
T Consensus 254 -----------~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 254 -----------VLQSELESCKELQELEP--ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp -----------HHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred -----------HHhhHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 12367789999888765 5564 56688999999999999999999999999999876655544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=2.3e-08 Score=100.90 Aligned_cols=187 Identities=11% Similarity=0.050 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003433 349 QMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCK 428 (820)
Q Consensus 349 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~ 428 (820)
..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++.+........+|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566666666665433335556666666666777777777777776655322223456666666666777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 003433 429 EMESSGIRKDAVTYNALLGG-YGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGL-K 506 (820)
Q Consensus 429 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 506 (820)
++++.+ +.+...|...+.. +...|+.+.|..+|+.++.. .+.+...|...+..+.+.|+++.|..+|++.++... .
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 766554 3333444333332 23346667777777766654 234556666666666677777777777777665432 2
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 507 A--DVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 507 p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
| ....|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 234566666666666777777777666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=2e-09 Score=105.85 Aligned_cols=153 Identities=15% Similarity=0.040 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHccc-ccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003433 171 EWSKAIQCFAFAVKREE-RKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAIS 249 (820)
Q Consensus 171 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 249 (820)
+.+.|+.-+++++.... ..+....++..++.+|.+.|++++|+..|++++...+ .++.+|+.++.+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 44555555555554321 1122344666677777777777777777777777643 367777777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 003433 250 VFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVH 327 (820)
Q Consensus 250 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 327 (820)
.|+++.+.... +..+|..+..++...| ++++|.+.|++.++.... +......+...+.+.+..+.+..+......
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGG-RDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHh-hHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 77777764322 4556666777777777 777777777777765322 344333334444445554445444444444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=5.5e-09 Score=102.64 Aligned_cols=29 Identities=17% Similarity=0.004 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003433 510 VLYSALIDALCKNGLVESAVSLLDEMTKE 538 (820)
Q Consensus 510 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 538 (820)
.+|..+...|...|++++|++.|++.+..
T Consensus 210 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 210 ETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 35556677777777777777777777764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=8.5e-08 Score=80.56 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=83.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcC
Q 003433 649 SAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFG 727 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 727 (820)
..-++.+...|++++|+..|+++++.+|.+..++.++...+ ..|++++|+..++++++++|.+ +..|..++.+|...|
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHcc
Confidence 34578888999999999999999999999988877776665 5889999999999999999966 666999999999999
Q ss_pred chHHHHHHHHHhhhhhhh
Q 003433 728 QKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 728 ~~~~A~~~~~~~~~~~~~ 745 (820)
++++|...++++.+....
T Consensus 86 ~~~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEAN 103 (117)
T ss_dssp CHHHHHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999998876553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=5e-05 Score=73.66 Aligned_cols=221 Identities=12% Similarity=0.016 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHchhCCCCCCHHHHHHH
Q 003433 300 ITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICK----GAQMDLAFEIMAEMPAKNISPNVVTYSTM 375 (820)
Q Consensus 300 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 375 (820)
..+..|...+.+.+++++|++.|++..+.| +...+..|..+|.. ..+...|...++.....+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344445555555566666666666665544 44444445555544 345555555555555443 33333333
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 376 IDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 376 i~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+..... ..+...+..|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhhh
Confidence 333332 2345555555555555431 1222222222221 2234444444444443 233444444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003433 448 GYGK----QGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDAL 519 (820)
Q Consensus 448 ~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 519 (820)
.|.. ..+...+...++...+.| +......|...|.. ..++++|+..|++..+.| +...+..|...|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y 224 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 224 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence 4443 233444444444444432 34444444444433 334555555555554443 333444444444
Q ss_pred HH----cCCHHHHHHHHHHHHHC
Q 003433 520 CK----NGLVESAVSLLDEMTKE 538 (820)
Q Consensus 520 ~~----~g~~~~A~~~~~~m~~~ 538 (820)
.+ ..+.++|.+.|++..+.
T Consensus 225 ~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 225 YNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHC
Confidence 32 12344455555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=8e-07 Score=88.32 Aligned_cols=163 Identities=9% Similarity=0.060 Sum_probs=78.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 003433 200 ISILGRLGKVDLAKNIFETALNE----GY-GNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLK-PN----LVTYNAV 269 (820)
Q Consensus 200 ~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 269 (820)
+.+|..+|++++|...|.++... +- ..-..+|..+..+|.+.|++++|++.+++..+.-.. .+ ..++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34455566666666666655432 00 011245555666666666666666666554321000 01 2233333
Q ss_pred HHHHH-cCCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHH
Q 003433 270 IDACG-KGGVDFKHVVEIFDDMLRN----GVQP-DRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQD------IFTY 337 (820)
Q Consensus 270 l~~~~-~~g~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~------~~~~ 337 (820)
...|. ..| ++++|++.|++..+. +..+ -..++..+...+...|++++|...|+++........ ...+
T Consensus 124 ~~~~~~~~~-~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 124 GEILENDLH-DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHhHhhHHH-HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 43442 235 666666666655421 1000 123345555666666666666666666655421111 0122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHchhC
Q 003433 338 NTLLDAICKGAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 338 ~~ll~~~~~~g~~~~A~~~~~~m~~~ 363 (820)
..++..+...|+++.|...|++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33344445556666666666665544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=1e-07 Score=89.22 Aligned_cols=100 Identities=11% Similarity=-0.062 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 003433 643 PNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTD 721 (820)
Q Consensus 643 Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 721 (820)
|+...+...++.|.+.|++++|+..|+++++.+|.+..++.++...+ +.|++++|+..|+++++++|++ ...|..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHH
Confidence 67777888899999999999999999999999999988887776666 6889999999999999999965 666888999
Q ss_pred HHhhcCchHHHHHHHHHhhhhh
Q 003433 722 MLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 722 ~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
+|.+.|++++|...++++.+..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=2.5e-06 Score=84.59 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=147.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccc---cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCH
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREER---KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG-----NTV 228 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 228 (820)
+.|......|...++|++|++.|.++...... .+....+|..++.+|.+.|++++|...++++...... ...
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 45777888899999999999999999874321 2233567899999999999999999999988653111 114
Q ss_pred HHHHHHHHHHH-hcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCC----
Q 003433 229 YAFSALISAYG-RSGYCQEAISVFNSMKRY----NLKP-NLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPD---- 298 (820)
Q Consensus 229 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~---- 298 (820)
.++..++..|- ..|++++|++.|++..+. +-.+ -..+|..+...+...| ++++|+..|+++........
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g-~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-QYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC-hHHHHHHHHHHHHHhCccchhhhh
Confidence 56667777774 469999999999987532 1111 1345788889999999 99999999999987632221
Q ss_pred -H-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHh--cCCHHHHHHHHHHchhC
Q 003433 299 -R-ITFNSLLAVCSRGGLWEAARNLFNEMVHRGID-Q---DIFTYNTLLDAICK--GAQMDLAFEIMAEMPAK 363 (820)
Q Consensus 299 -~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~-~---~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~ 363 (820)
. ..+..++..+...|+++.|...+++..+.... + .......|+.++.. .+.+++|+..|+++.+.
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 1 22344555677899999999999998775321 1 12345566666655 34588898888877754
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00025 Score=68.51 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003433 333 DIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAK----AGRLDDALNMFSEMKFLGIGLDRVSYN 408 (820)
Q Consensus 333 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~d~~~~~ 408 (820)
|+..+..|...+.+.+++++|++.|++..+.| |...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45667778888999999999999999998876 77788888888877 668999999999988876 444555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 409 TVLSIYAK----LGRFEEALLVCKEMESSGIRKDAVTYNALLGGYG----KQGKYDEVRRMFEQMKADCVSPNLLTYSTL 480 (820)
Q Consensus 409 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 480 (820)
.|...+.. ..+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 55555543 4678999999999888662 333333433443 345678888888887775 477888888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 481 IDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGLVESAVSLLDEMTKEGIRPNVVTYNSIID 552 (820)
Q Consensus 481 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 552 (820)
...|.. ..+...+...++...+.| +...+..|...|.. ..+.++|+..|++..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 888886 457888889999888864 67777778777776 568999999999999876 5667777777
Q ss_pred HHhh----cCchhhhHHhHHHHhhhhhh
Q 003433 553 AFGR----SATTECTVDDVERDLGKQKE 576 (820)
Q Consensus 553 ~~~~----~g~~~~a~~~~~~~l~~~~~ 576 (820)
.|.+ ..+.++|++.++++.....+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 7764 34788999999988876544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.3e-06 Score=71.49 Aligned_cols=95 Identities=15% Similarity=0.047 Sum_probs=81.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYG 239 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 239 (820)
..-...+.+.|++++|+.+|.++++.+ |.+..++..++.++.+.|++++|+..++.+++.++ .+...|..++.++.
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHH
Confidence 335667888999999999999999874 55667889999999999999999999999998764 47889999999999
Q ss_pred hcCChhHHHHHHHHHHhCC
Q 003433 240 RSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 240 ~~g~~~~A~~~~~~m~~~~ 258 (820)
..|++++|+..|++..+..
T Consensus 83 ~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 9999999999999998743
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.1e-06 Score=77.88 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=74.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 413 IYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKE 492 (820)
Q Consensus 413 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 492 (820)
.+...|++++|++.|.++. +++..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3445566666665555432 3455555556666666666666666666655542 3345555566666666666666
Q ss_pred HHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003433 493 AMQIFREFKQAGL--------------KA-DVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRP 542 (820)
Q Consensus 493 A~~~~~~m~~~~~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 542 (820)
|++.|++.+.... .. ...++..+..++.+.|++++|.+.|+++++....+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 6666665543210 00 13456667778888999999999988888754443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=3.5e-06 Score=77.43 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=66.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003433 378 GYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
.+...|++++|++.|.++. +++..+|..+..+|...|++++|++.|++.++.+ +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3444455555555444321 3344444445555555555555555555554443 3344555555555555555555
Q ss_pred HHHHHHHHHHCC--------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003433 458 VRRMFEQMKADC--------------VSP-NLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLK 506 (820)
Q Consensus 458 A~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 506 (820)
|...|++.+... ... ...++..+..+|.+.|++++|.+.|+...+....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 555555544321 000 1245556777888888888888888887765443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.44 E-value=3.6e-07 Score=75.83 Aligned_cols=89 Identities=10% Similarity=-0.022 Sum_probs=78.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCc
Q 003433 650 AILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQ 728 (820)
Q Consensus 650 ~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 728 (820)
.++..+.+.|++++|...|++++..+|.+..+...+...+ +.+++++|+..++++++++|.+ ...+..|+.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHHHCCC
Confidence 5677888999999999999999999999888777766555 6889999999999999999966 6779999999999999
Q ss_pred hHHHHHHHHHh
Q 003433 729 KRGAQLVVLEG 739 (820)
Q Consensus 729 ~~~A~~~~~~~ 739 (820)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.7e-07 Score=77.64 Aligned_cols=97 Identities=9% Similarity=-0.013 Sum_probs=82.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc----ccchHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHH
Q 003433 649 SAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY----RDNIWVQALSLFDEVKLMDSSTA-SAFYNALTDML 723 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 723 (820)
..|++.+...+++++|++.|++++..+|.+..+..++...+ ..+++++|+.+++++++.+|.+. ...+..||.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788888999999999999999999999999888886654 35678899999999999988543 34688899999
Q ss_pred hhcCchHHHHHHHHHhhhhhhh
Q 003433 724 WHFGQKRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 724 ~~~g~~~~A~~~~~~~~~~~~~ 745 (820)
.+.|++++|+++++++++....
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHHHHHHhCcC
Confidence 9999999999999999877653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=4.5e-06 Score=74.16 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=79.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAY 238 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 238 (820)
+......|.+.|++++|+..|.++++.+ |.+..+|..++.+|...|++++|+..|+++++..+ .+..+|..++.+|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc---hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHH
Confidence 4445667888999999999999998874 55667888899999999999999999999988754 3778888899999
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 003433 239 GRSGYCQEAISVFNSMKRYN 258 (820)
Q Consensus 239 ~~~g~~~~A~~~~~~m~~~~ 258 (820)
...|++++|+..|++..+..
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVK 108 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999888743
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=9.4e-06 Score=71.98 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=42.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003433 447 GGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVE 526 (820)
Q Consensus 447 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 526 (820)
..|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+++++.++. +...|..++.+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHH
Confidence 33444444444544444444432 233444444455555555555555555555444322 3444544555555555555
Q ss_pred HHHHHHHHHHH
Q 003433 527 SAVSLLDEMTK 537 (820)
Q Consensus 527 ~A~~~~~~m~~ 537 (820)
+|+..|++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.28 E-value=3.3e-06 Score=78.45 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003433 472 PNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN-VVTYNSI 550 (820)
Q Consensus 472 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 550 (820)
|+...+...+..|.+.|++++|+..|++.++..+. +...|..++.+|.+.|++++|+..|+++++. .|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 55566666777777788888888888777776543 6777777788888888888888888887763 454 4477777
Q ss_pred HHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 551 IDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 551 l~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
..+|.+.|++++|+..++++++..|+.
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 888888888888888888777766643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.25 E-value=3.7e-06 Score=69.46 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
.+..+...+.+.|++++|+..|++++... |.+..++..++.++.+.|++++|+..|+++++..+. +..+|..+...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~ 93 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 93 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc---cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHH
Confidence 34456777888999999999999999874 555678899999999999999999999999887543 78899999999
Q ss_pred HHhcCChhHHHHHHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMK 255 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~ 255 (820)
|...|++++|++.|++.+
T Consensus 94 y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 94 HTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=1.6e-06 Score=73.80 Aligned_cols=96 Identities=8% Similarity=0.053 Sum_probs=79.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcch------hHHHHH
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTAS------AFYNAL 719 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l 719 (820)
.+-.+++.|.+.|++++|+..|+++++.+|.+..+..++...+ ..|+|++|+..++++++++|.+.. ..|..+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999888877776665 678999999999999998875532 356678
Q ss_pred HHHHhhcCchHHHHHHHHHhhhh
Q 003433 720 TDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 720 ~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
++++...|++++|.+++.++...
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 88888899999999998877543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=7.5e-06 Score=73.49 Aligned_cols=85 Identities=11% Similarity=-0.063 Sum_probs=71.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+|+.++.+|.+.|++++|...+++++..+|.+..++..+...+ ..|++++|+..|+++++++|++ ..+...+..++.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 5677888999999999999999999999999888877776655 5889999999999999999965 7778888888777
Q ss_pred cCchHHH
Q 003433 726 FGQKRGA 732 (820)
Q Consensus 726 ~g~~~~A 732 (820)
.++..+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.15 E-value=6.2e-06 Score=74.05 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 003433 645 VVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDML 723 (820)
Q Consensus 645 ~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 723 (820)
...|..++.+|.+.|++++|+..|+++++.+|.+..++..+...+ ..|++++|+..|+++++++|++ ..++..|..++
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 445778888999999999999999999999999888777776665 5789999999999999999965 66688888777
Q ss_pred hhcCchHHH
Q 003433 724 WHFGQKRGA 732 (820)
Q Consensus 724 ~~~g~~~~A 732 (820)
.+..+..++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.00083 Score=66.22 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003433 197 SAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKG 276 (820)
Q Consensus 197 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 276 (820)
..++..|.+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+.- +..+|..+...+.+.
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDG 82 (336)
T ss_dssp -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhC
Confidence 3455556666666666666654421 4455566666666666666665442 455666666666655
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003433 277 GVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGA 348 (820)
Q Consensus 277 g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 348 (820)
. ....+ .+.......+......++..|-..|.+++...+++..... -..+...++.|+..|++.+
T Consensus 83 ~-e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 83 K-EFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp T-CHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred c-HHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 5 44322 1222223335555556666676777777777777665533 1345566666777776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.12 E-value=3.1e-05 Score=69.15 Aligned_cols=92 Identities=9% Similarity=-0.088 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhh
Q 003433 647 TFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWH 725 (820)
Q Consensus 647 ~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (820)
+|+.+..+|.+.|++++|+..+++++..+|.+..........+ ..|++++|+..|+++++++|++ ..+...+..+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 5677888899999999999999999999999988877776665 5789999999999999999965 6778888888777
Q ss_pred cCchHH-HHHHHHHh
Q 003433 726 FGQKRG-AQLVVLEG 739 (820)
Q Consensus 726 ~g~~~~-A~~~~~~~ 739 (820)
.++..+ ..+++..+
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 665543 34444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=9.4e-07 Score=95.08 Aligned_cols=228 Identities=10% Similarity=-0.012 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003433 174 KAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNS 253 (820)
Q Consensus 174 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 253 (820)
+|.+.|+++++..+ +...++..+..++...|++++| |++++..++. ....++.....+ ...+..+++.++.
T Consensus 4 eA~q~~~qA~~l~p---~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKA---DMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHG---GGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHH
Confidence 68888998887653 3333556677788888888776 6777654211 112222221111 1225567777777
Q ss_pred HHhCCCCCCHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 003433 254 MKRYNLKPNLVTYNAVIDAC--GKGGVDFKHVVEIFDDMLRNGVQPDRITFNSLLAVCSRGGLWEAARNLFNEMVHRGID 331 (820)
Q Consensus 254 m~~~~~~p~~~~~~~ll~~~--~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~ 331 (820)
..+....++..-....+..+ ...+ .++.++..++...+.. ..+...+..+...+.+.|+.++|...+....+..
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~-~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASG-FYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHH-HHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 76543333322222211111 1122 3445544444433321 1244556667777777888888877776665532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003433 332 QDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVL 411 (820)
Q Consensus 332 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li 411 (820)
...++..|...+...|++++|+..|++..+.... +...|+.|...|...|+..+|+..|.+..... +|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 1345666777788888888888888887766432 45678888888888888888888888877665 55666777776
Q ss_pred HHHHHc
Q 003433 412 SIYAKL 417 (820)
Q Consensus 412 ~~~~~~ 417 (820)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=5.5e-06 Score=72.02 Aligned_cols=87 Identities=13% Similarity=-0.043 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-----------ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhc
Q 003433 658 CNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-----------RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLWHF 726 (820)
Q Consensus 658 ~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 726 (820)
.+.+++|++.|+.+++.+|++..++.++...+ ..+.+++|+..|+++++++|++ ...|+.+|.+|...
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHHHHHc
Confidence 33445555555555555554444443332221 1245789999999999999966 66688899999877
Q ss_pred Cc-----------hHHHHHHHHHhhhhhhh
Q 003433 727 GQ-----------KRGAQLVVLEGKRRQVW 745 (820)
Q Consensus 727 g~-----------~~~A~~~~~~~~~~~~~ 745 (820)
|+ +++|.+.++++.+....
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 64 57788888877766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.04 E-value=1.1e-05 Score=70.12 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc----------cCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc-
Q 003433 623 RQEILCILGVFQKMHKLKIKPN-VVTFSAILNACSR----------CNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR- 690 (820)
Q Consensus 623 ~~~~~~Al~~~~~m~~~~~~Pd-~~~~~~ll~a~~~----------~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~- 690 (820)
.+.+++|+..|++.++ +.|+ ..++..++.+|.. .+.+++|++.|+++++++|.+....+++...+.
T Consensus 10 ~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3478899999999998 6774 6678888888874 355689999999999999999988887765441
Q ss_pred -----------cchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 691 -----------DNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 691 -----------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
.+.+++|...|+++++++|++ ..++..|+...-
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~k 131 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAK 131 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHT
T ss_pred cccchhhHHHHHHhHHHhhhhhhcccccCCCH-HHHHHHHHHHHH
Confidence 246789999999999999965 666666665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.1e-05 Score=67.41 Aligned_cols=99 Identities=14% Similarity=-0.012 Sum_probs=68.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003433 161 FLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKV---DLAKNIFETALNEGYGNT-VYAFSALIS 236 (820)
Q Consensus 161 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~-~~~~~~li~ 236 (820)
.++..+...+++++|.+.|+.++..+ |.+..++..++.++.+.++. ++|+.+|++++..+..++ ..+|..|+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45666777778888888888888774 44445667777777765444 458888888776543332 346777788
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 003433 237 AYGRSGYCQEAISVFNSMKRYNLKPNLV 264 (820)
Q Consensus 237 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 264 (820)
+|.+.|++++|++.|+++++. .|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~--~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQT--EPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--CcCCH
Confidence 888888888888888888773 45433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.01 E-value=1.7e-05 Score=69.67 Aligned_cols=79 Identities=6% Similarity=-0.050 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHHHHHHh
Q 003433 646 VTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNALTDMLW 724 (820)
Q Consensus 646 ~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 724 (820)
.+|+.++.+|.+.|++++|.+.++++++.+|.+..++......+ ..|++++|+..|+++++++|++ ..+...+..+.-
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence 46778889999999999999999999999998888777776665 5789999999999999999965 555666666554
Q ss_pred h
Q 003433 725 H 725 (820)
Q Consensus 725 ~ 725 (820)
+
T Consensus 147 k 147 (153)
T d2fbna1 147 K 147 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=6.7e-05 Score=67.00 Aligned_cols=97 Identities=12% Similarity=-0.052 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC------------hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREERKND------------QGKLASAMISILGRLGKVDLAKNIFETALNEGYGN 226 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 226 (820)
+......+.+.|++++|+..|..++........ ...++..++.+|.+.|++++|+..++.++..++.
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~- 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc-
Confidence 444567788999999999999999875322111 1123444555555555555555555555554322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 227 TVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 227 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
++.+|..++.+|...|++++|+..|++..+
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555555555555555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=1.1e-06 Score=94.58 Aligned_cols=226 Identities=9% Similarity=-0.014 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCHHHHHHHHHH
Q 003433 211 LAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLV-TYNAVIDACGKGGVDFKHVVEIFDD 289 (820)
Q Consensus 211 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~~A~~~~~~ 289 (820)
+|.+.|+++.+.... .+.++..+..+|...|++++| |++++.. .|+.. .++. ...+.+. .+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw~~--~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLWNH--AFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHHHH--HTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHHHH--HHHHHHHHHHH
Confidence 677888888764221 345666777788888888776 6666542 22211 1111 1111111 24566677776
Q ss_pred HHHCCCCCCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCC
Q 003433 290 MLRNGVQPDRITFNSLLA--VCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISP 367 (820)
Q Consensus 290 m~~~g~~p~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p 367 (820)
..+....++..-....+. .....+.++.++..+....+.. ..+...+..+...+.+.|+.++|...+++.....
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 665433333222211111 1122334444444444333321 2234556666777777777777776665554321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003433 368 NVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLG 447 (820)
Q Consensus 368 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 447 (820)
...++..+...+...|++++|+..|++..+.. +-+...|+.|...|...|+..+|+..|.+.+... +|...++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 12455666777777777777777777776663 3445677777777777777777777777776655 456666666666
Q ss_pred HHHh
Q 003433 448 GYGK 451 (820)
Q Consensus 448 ~~~~ 451 (820)
.|.+
T Consensus 229 ~~~~ 232 (497)
T d1ya0a1 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=0.0063 Score=59.72 Aligned_cols=279 Identities=10% Similarity=0.073 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRNGVQPDRITFNSL 305 (820)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~g~~p~~~~~~~l 305 (820)
+|..--..++..|.+.|.++.|..+|..+.. |..++..+.+.+ ++..|.+++.+.- +..+|..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~-~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLG-EYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTT-CHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhc-cHHHHHHHHHHcC------CHHHHHHH
Confidence 4555566778888899999999999987754 567788888888 8999988887652 67788888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCH
Q 003433 306 LAVCSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRL 385 (820)
Q Consensus 306 l~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 385 (820)
...+.+......+. +.......+......++..|-..|.+++.+.+++...... ..+...++.++..|++.+.
T Consensus 76 ~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~- 148 (336)
T d1b89a_ 76 CFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP- 148 (336)
T ss_dssp HHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-
T ss_pred HHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-
Confidence 88888887765542 2233334466667789999999999999999999876432 3477788899999988653
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 003433 386 DDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSG--------IRKDAVTYNALLGGYGKQGKYDE 457 (820)
Q Consensus 386 ~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~ 457 (820)
++-.+.++.. +..-|. ..++..|-+.+.+.++.-++.++.... ..++..-...++..+.+..+.+.
T Consensus 149 ~kl~e~l~~~---s~~y~~---~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~ 222 (336)
T d1b89a_ 149 QKMREHLELF---WSRVNI---PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL 222 (336)
T ss_dssp HHHHHHHHHH---STTSCH---HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH
T ss_pred HHHHHHHHhc---cccCCH---HHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH
Confidence 3333333322 112222 223444444444444444443331100 01121112223333333333333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 458 VRRMFEQMKADCVSPNLLTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 458 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|-.++..|.... .+-...++..+... -|. ..++..+-+.+++......++....
T Consensus 223 -------------------~~~~i~~yL~~~-p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 223 -------------------YYRAIQFYLEFK-PLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp -------------------HHHHHHHHHHHC-GGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHcC-HHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 333333333211 11111222222111 111 2344455566666667777766655
Q ss_pred CCCCCCHHHHHHHHHHHhhcCchhh
Q 003433 538 EGIRPNVVTYNSIIDAFGRSATTEC 562 (820)
Q Consensus 538 ~g~~p~~~~~~~ll~~~~~~g~~~~ 562 (820)
.| +..+.++|.+.|...++++.
T Consensus 277 ~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 277 HN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHH
T ss_pred cC---hHHHHHHHHHHHhCcchhHH
Confidence 44 44678888888888887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.88 E-value=0.00011 Score=65.38 Aligned_cols=99 Identities=11% Similarity=-0.094 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCC------------hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003433 157 DDYTFLLRELGNRGEWSKAIQCFAFAVKREERKND------------QGKLASAMISILGRLGKVDLAKNIFETALNEGY 224 (820)
Q Consensus 157 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 224 (820)
+.+......+.+.|++.+|+..|..++..-..... ...++..+..+|.+.|++++|+..++.+++..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34555778899999999999999998863211111 112344455566666666666666666665543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 225 GNTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 225 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
.+..+|..+..+|...|++++|+..|+++.+
T Consensus 96 -~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 96 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556666666666666666666666666665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=0.00023 Score=62.08 Aligned_cols=68 Identities=21% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003433 475 LTYSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVV 545 (820)
Q Consensus 475 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 545 (820)
.+|+.+..+|.+.|++++|++.++..++.++. ++.+|..++.+|...|++++|+..|++.++. .|+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~ 135 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNL 135 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCH
Confidence 46677888888888888888888888887643 7788888888888888888888888888874 45444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=9.8e-05 Score=62.25 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=69.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-----HHHHHH
Q 003433 160 TFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGN-T-----VYAFSA 233 (820)
Q Consensus 160 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-----~~~~~~ 233 (820)
..+...+.+.|+|++|++.|.+++..+ |.+..++..++.+|.+.|++++|+..++++++..... . ..+|..
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 346677888888888888888888874 4556678888888888888888888888877642110 1 246667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 003433 234 LISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 234 li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
+...+...+++++|++.|++...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 77777788888888888877665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.71 E-value=0.00028 Score=63.14 Aligned_cols=128 Identities=11% Similarity=0.071 Sum_probs=82.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003433 158 DYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISA 237 (820)
Q Consensus 158 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 237 (820)
........+...|++++|.+.|..++......... .....+.+...-..+... ....+..++..
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~ 76 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVED----KVLAHTAKAEA 76 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34456677889999999999999999863211110 000001111111111111 24567777888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003433 238 YGRSGYCQEAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLR-----NGVQPDRITFN 303 (820)
Q Consensus 238 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 303 (820)
+.+.|++++|+..++++.+.... +...|..++.++.+.| +.++|++.|+++.+ .|+.|...+-.
T Consensus 77 ~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~G-r~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 77 EIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSD-RQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 88888888888888888775433 6777888888888888 88888888887643 57888766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.69 E-value=0.00026 Score=63.00 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcccc-------------cCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003433 159 YTFLLRELGNRGEWSKAIQCFAFAVKREER-------------KNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYG 225 (820)
Q Consensus 159 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 225 (820)
+......+...|++++|++.|.++++.... .+....++..+..++.+.|++++|+..++++++..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p- 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-
Confidence 444566788899999999999988753210 011122333444444444444444444444444332
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 226 NTVYAFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 226 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
.++.+|..++.+|.+.|++++|+..|++..+
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 2344444444444444444444444444444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.45 E-value=0.0016 Score=58.01 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003433 408 NTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSKG 487 (820)
Q Consensus 408 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 487 (820)
..........|++++|...|.+.+..- +... +......+-+...-..+... ....+..++..+.+.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 344457778899999999998887642 1110 00011111111111222211 345677889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 003433 488 GLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTK-----EGIRPNVVTYN 548 (820)
Q Consensus 488 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 548 (820)
|++++|+..++++++..+. +...|..++.+|.+.|+.++|++.|+++.+ .|+.|...+-.
T Consensus 81 g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~ 145 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 145 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 9999999999999998764 899999999999999999999999999854 49999876533
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00028 Score=61.71 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHhhcCchhhhHHhHHHHhhhhhhh
Q 003433 511 LYSAL--IDALCKNGLVESAVSLLDEMTKEG-IRPN----------VVTYNSIIDAFGRSATTECTVDDVERDLGKQKES 577 (820)
Q Consensus 511 ~~~~l--i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~l~~~~~~ 577 (820)
+|..+ +..+.+.|++++|+..|++.++.. -.|+ ...|+.+..+|.+.|++++|+..+++++..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~---- 84 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 84 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc----
Confidence 44444 445667788888888888887521 0111 357788888999999999888765555543
Q ss_pred hhhhhhhccCchhhhhhccchHHHHHHHHHHHHHHhcCCccchhhhhhHHHHHHHHHHHHHCCCCCC-----HHHHHHHH
Q 003433 578 ANLDAMCSQDDKDVQEAGRTDNQIIKVFGQLVAEKAGQGKKENRCRQEILCILGVFQKMHKLKIKPN-----VVTFSAIL 652 (820)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~m~~~~~~Pd-----~~~~~~ll 652 (820)
+.+... ..++ ...+..++
T Consensus 85 -------------------------------------------------------~~~~~~--~~~~~~~~~~~a~~~~g 107 (156)
T d2hr2a1 85 -------------------------------------------------------FNRRGE--LNQDEGKLWISAVYSRA 107 (156)
T ss_dssp -------------------------------------------------------HHHHCC--TTSTHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------cccccc--ccccccchhHHHHhhhH
Confidence 332211 1111 22467889
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCC
Q 003433 653 NACSRCNSFEDASMLLEELRLFDN 676 (820)
Q Consensus 653 ~a~~~~g~~~eA~~~~~~~~~~~~ 676 (820)
.+|...|++++|.+.|++++++.+
T Consensus 108 ~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 108 LALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999886543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=0.00013 Score=69.90 Aligned_cols=123 Identities=14% Similarity=0.067 Sum_probs=71.1
Q ss_pred HHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003433 166 LGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVYAFSALISAYGRSGYCQ 245 (820)
Q Consensus 166 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 245 (820)
..+.|++++|+..|+.+++.. |.+...+..++.+|+..|++++|.+.|+.+.+..+. +...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccH
Confidence 456788888888888888773 556667788888888888888888888888776432 4555555555544333333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Q 003433 246 EAISVFNSMKRYNLKPNLVTYNAVIDACGKGGVDFKHVVEIFDDMLRN 293 (820)
Q Consensus 246 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~~A~~~~~~m~~~ 293 (820)
++...+......+-.++...+......+...| +.++|.++++++.+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~g-d~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEEL 128 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhc
Confidence 32222111111111112223333344455556 666666666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.35 E-value=0.00017 Score=69.09 Aligned_cols=117 Identities=10% Similarity=-0.043 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhccc-cchHHHHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKP-NVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGYR-DNIWVQALSLF 701 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~P-d~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~ 701 (820)
|++++|+..|++.++ .+| |...+..++..|+..|++++|.+.|+.+.+.+|+.......+...+. .+...++....
T Consensus 10 G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~ 87 (264)
T d1zbpa1 10 GQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 87 (264)
T ss_dssp TCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHh
Confidence 578899999999998 667 56779999999999999999999999999999987766544432221 22222222222
Q ss_pred HHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhh
Q 003433 702 DEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRR 742 (820)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 742 (820)
.+.....+.+....+...+.++.+.|++++|...+.++.+.
T Consensus 88 ~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22122222233455666788899999999999999887655
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.00081 Score=52.79 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=60.3
Q ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHccccc----CChhHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003433 154 CGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERK----NDQGKLASAMISILGRLGKVDLAKNIFETALNEGYGNTVY 229 (820)
Q Consensus 154 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 229 (820)
.+++++..+...+.+.|++++|+..|+++++..... .....++..++.++.+.|++++|+..++++++..+. +..
T Consensus 3 Lsaddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~ 81 (95)
T d1tjca_ 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQR 81 (95)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHH
Confidence 356777788999999999999999999988754321 223456778888888888888888888888887543 455
Q ss_pred HHHHH
Q 003433 230 AFSAL 234 (820)
Q Consensus 230 ~~~~l 234 (820)
+++.+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.0016 Score=56.62 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=66.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcccccCC---------hhHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCC-
Q 003433 163 LRELGNRGEWSKAIQCFAFAVKREERKND---------QGKLASAMISILGRLGKVDLAKNIFETALNEG-----YGNT- 227 (820)
Q Consensus 163 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~- 227 (820)
...+.+.|++++|++.|++++......++ ...+|+.++.+|.+.|++++|...++++++.. ..++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 55566789999999999999986543322 23567788888888888888888888876521 1111
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 003433 228 ----VYAFSALISAYGRSGYCQEAISVFNSMKR 256 (820)
Q Consensus 228 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 256 (820)
..+++.+..+|...|++++|+..|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566677778888888888888777653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00054 Score=53.86 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=40.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHhhcCCc-------hhHHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCcchhHHHHH
Q 003433 649 SAILNACSRCNSFEDASMLLEELRLFDNQ-------VYGVAHGLLMGY-RDNIWVQALSLFDEVKLMDSSTASAFYNAL 719 (820)
Q Consensus 649 ~~ll~a~~~~g~~~eA~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 719 (820)
-.++..+.+.|++++|...|+++++..+. ...+..++...+ +.|++++|+..++++++++|++ ...++.+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-~~a~~Nl 86 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRANGNL 86 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-HHHHHHH
Confidence 36777778888888888888777644221 122333333333 4566666666666666666644 3334444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.39 E-value=0.029 Score=46.58 Aligned_cols=113 Identities=8% Similarity=-0.033 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCchhHHHHHHHhcc-----ccchHHHHH
Q 003433 624 QEILCILGVFQKMHKLKIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNQVYGVAHGLLMGY-----RDNIWVQAL 698 (820)
Q Consensus 624 ~~~~~Al~~~~~m~~~~~~Pd~~~~~~ll~a~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~A~ 698 (820)
+|+++|+..|++..+.| +......|+ .....+.++|.++|++..+.+.... ...+...+ -..+.++|.
T Consensus 7 kd~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a--~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELNSGNG--CRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhcccchhh--hhhHHHhhhhccccchhhHHHH
Confidence 48889999999998876 333333443 3445789999999999876654332 22222212 245789999
Q ss_pred HHHHHHhhcCCCcchhHHHHHHHHHhh----cCchHHHHHHHHHhhhhhhhh
Q 003433 699 SLFDEVKLMDSSTASAFYNALTDMLWH----FGQKRGAQLVVLEGKRRQVWE 746 (820)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 746 (820)
..|+++.+.+. +.....|+.+|.+ ..+.++|.++++++.+.|...
T Consensus 80 ~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~ 128 (133)
T d1klxa_ 80 QYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED 128 (133)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence 99999998765 4457889999887 458999999999998887654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.97 E-value=0.11 Score=42.98 Aligned_cols=81 Identities=12% Similarity=-0.042 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 003433 453 GKYDEVRRMFEQMKADCVSPNLLTYSTLIDVYSK----GGLYKEAMQIFREFKQAGLKADVVLYSALIDALCK----NGL 524 (820)
Q Consensus 453 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 524 (820)
.+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555543 44444444444443 234566666666665543 34444445544444 235
Q ss_pred HHHHHHHHHHHHHCC
Q 003433 525 VESAVSLLDEMTKEG 539 (820)
Q Consensus 525 ~~~A~~~~~~m~~~g 539 (820)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 556666666655544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=1.8 Score=43.83 Aligned_cols=171 Identities=9% Similarity=0.000 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003433 382 AGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRM 461 (820)
Q Consensus 382 ~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 461 (820)
.+..+.+..++......+ .+......++......+++..+...+..|.... .....-..=+..++...|+.++|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555666665555442 233333334444455666666666666553221 11223333455666667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003433 462 FEQMKADCVSPNLLTYSTLIDVYSKGGL-YKEAMQIFREFKQAGLKADVVL---YSALIDALCKNGLVESAVSLLDEMTK 537 (820)
Q Consensus 462 ~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 537 (820)
|..+... ++ -|.-|. +- +.|. +.-.. .-..... ..... -..-+..+...|+..+|...+..+..
T Consensus 342 ~~~~a~~---~~--fYG~LA-a~-~Lg~~~~~~~----~~~~~~~-~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 342 LHQLMQQ---RG--FYPMVA-AQ-RIGEEYELKI----DKAPQNV-DSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHHHHTS---CS--HHHHHH-HH-HTTCCCCCCC----CCCCSCC-CCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcC---CC--hHHHHH-HH-HcCCCCCCCc----CCCCccH-HHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 7766532 23 122211 11 1111 00000 0000000 00000 01124456677777777777777764
Q ss_pred CCCCCCHHHHHHHHHHHhhcCchhhhHHhHHHH
Q 003433 538 EGIRPNVVTYNSIIDAFGRSATTECTVDDVERD 570 (820)
Q Consensus 538 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 570 (820)
. . +......+.....+.|.++.|+....++
T Consensus 410 ~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 410 S-K--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp T-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred C-C--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 3 2 4445556666667777777777665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.89 E-value=0.029 Score=45.03 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhcCCCcchhHHHHHHHHHhhcCchHHHHHHHHHhhhhh
Q 003433 693 IWVQALSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQ 743 (820)
Q Consensus 693 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 743 (820)
++++|+.+++++++.+|......+..|+-+|++.|++++|+++++.+++..
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 344555555555555543333344555556666666666666665555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.83 E-value=0.17 Score=40.47 Aligned_cols=69 Identities=9% Similarity=-0.031 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHhcc---CCHHHHHHHHHHHhhcCCchh-HHHHHHHhcc-ccchHHHHHHHHHHHhhcCCCc
Q 003433 643 PNVVTFSAILNACSRC---NSFEDASMLLEELRLFDNQVY-GVAHGLLMGY-RDNIWVQALSLFDEVKLMDSST 711 (820)
Q Consensus 643 Pd~~~~~~ll~a~~~~---g~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~ 711 (820)
|...|--..+.++.++ .+.++|+.+|+++...+|... ..++.+..++ +.|++++|+.+++++++++|.+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 4455544556666655 456789999999887777653 5666666665 6889999999999999999965
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.89 E-value=1.6 Score=34.17 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=79.0
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003433 309 CSRGGLWEAARNLFNEMVHRGIDQDIFTYNTLLDAICKGAQMDLAFEIMAEMPAKNISPNVVTYSTMIDGYAKAGRLDDA 388 (820)
Q Consensus 309 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 388 (820)
+.-.|.+++..++..+..+. .+..-||-.+--....-+-+...++++.+-+. .|.. ..+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHH
Confidence 34567788888888777764 35566666666665666666666666665432 1211 12222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003433 389 LNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDAVTYNALLGGYGKQGKYDEVRRMFEQMKAD 468 (820)
Q Consensus 389 ~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 468 (820)
...+-.+ .-+..-+..-++...+.|+-+.-.++++.+.+.+ .+++...-.+..+|.+.|...++-+++.+.-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222211 1122333444556666677776666766665544 566666666777777777777777777777666
Q ss_pred CC
Q 003433 469 CV 470 (820)
Q Consensus 469 ~~ 470 (820)
|+
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 64
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.06 E-value=6.7 Score=39.22 Aligned_cols=361 Identities=10% Similarity=0.011 Sum_probs=198.5
Q ss_pred chHHHHHHhhcccCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHcccccCChhHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003433 140 VSLGDILKKFEFKLCGADDYTFLLRELGNRGEWSKAIQCFAFAVKREERKNDQGKLASAMISILGRLGKVDLAKNIFETA 219 (820)
Q Consensus 140 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 219 (820)
..+...+...+.-+.....-..-+..+.+.++|++.+..|. ..+.+...-...+.+....|+.++|...+..+
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-------~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l 128 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-------EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL 128 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-------SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34445554443222212222335677888899887665442 12344445556778888899999998888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHH--HHHHHHHhCC-----------CCC-CHHHHHHHHHHHHcCCCCHHHHHH
Q 003433 220 LNEGYGNTVYAFSALISAYGRSGYCQEAI--SVFNSMKRYN-----------LKP-NLVTYNAVIDACGKGGVDFKHVVE 285 (820)
Q Consensus 220 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~~-----------~~p-~~~~~~~ll~~~~~~g~~~~~A~~ 285 (820)
-..|.. ....+..+...+.+.|.+.... +-++.+...| +.+ ........+.....- ..+..
T Consensus 129 W~~~~~-~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p----~~~~~ 203 (450)
T d1qsaa1 129 WLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP----NTVLT 203 (450)
T ss_dssp HSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG----GGHHH
T ss_pred HhcCCC-CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh----HhHHH
Confidence 665432 3334455555555544433221 2222222211 001 112222222222211 11111
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHH
Q 003433 286 IFDDMLRNGVQPDRITFNSLLAVCSR--GGLWEAARNLFNEMVHRGIDQDIFTYNTLL----DAICKGAQMDLAFEIMAE 359 (820)
Q Consensus 286 ~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~g~~~~~~~~~~ll----~~~~~~g~~~~A~~~~~~ 359 (820)
.. .. ...+......+..++.+ ..+.+.|..++........ .+..-+..+- ..+...+..+.+..++..
T Consensus 204 ~~---~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~ 277 (450)
T d1qsaa1 204 FA---RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD 277 (450)
T ss_dssp HH---HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred HH---hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 11 11 12233333333333333 3578888888888776432 2222222222 233345677888888887
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003433 360 MPAKNISPNVVTYSTMIDGYAKAGRLDDALNMFSEMKFLGIGLDRVSYNTVLSIYAKLGRFEEALLVCKEMESSGIRKDA 439 (820)
Q Consensus 360 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~d~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 439 (820)
....+. +......++......+++..+...+..|.... .-...-.--+..++...|+.++|...|..+.. .++
T Consensus 278 ~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~- 350 (450)
T d1qsaa1 278 AIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG- 350 (450)
T ss_dssp HHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS-
T ss_pred hccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC-
Confidence 776543 44444445566677899999999998875432 22344556677889999999999999998864 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003433 440 VTYNALLGGYGKQGKYDEVRRMFEQMKADCVSPN-LLT---YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSAL 515 (820)
Q Consensus 440 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 515 (820)
|..++.+- +.|..-. +-..-.. ..+. ... -..-+..+...|...+|...|..+... .+......+
T Consensus 351 --fYG~LAa~-~Lg~~~~---~~~~~~~--~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~l 419 (450)
T d1qsaa1 351 --FYPMVAAQ-RIGEEYE---LKIDKAP--QNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQL 419 (450)
T ss_dssp --HHHHHHHH-HTTCCCC---CCCCCCC--SCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHH
T ss_pred --hHHHHHHH-HcCCCCC---CCcCCCC--ccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHH
Confidence 33333221 1221000 0000000 0000 000 012345567889999999999988764 366677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 003433 516 IDALCKNGLVESAVSLLDEMT 536 (820)
Q Consensus 516 i~~~~~~g~~~~A~~~~~~m~ 536 (820)
.....+.|.++.|+....+..
T Consensus 420 a~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 420 ARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCCChhHHHHHHHHHH
Confidence 888899999999998877764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.25 E-value=2.6 Score=32.97 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003433 477 YSTLIDVYSKGGLYKEAMQIFREFKQAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGI 540 (820)
Q Consensus 477 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 540 (820)
++.-++.+.++|+-+.-.++++.+.+.+ ++++...-.+..+|-+.|...++-+++.++-+.|+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344445555555555555555544422 34555555555555555555555555555555543
|