Citrus Sinensis ID: 003446
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | 2.2.26 [Sep-21-2011] | |||||||
| O64495 | 775 | Subtilisin-like protease | no | no | 0.796 | 0.841 | 0.325 | 6e-75 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.880 | 0.952 | 0.308 | 4e-74 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.792 | 0.887 | 0.298 | 2e-67 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.811 | 0.887 | 0.287 | 1e-65 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.473 | 0.481 | 0.253 | 2e-19 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.109 | 0.203 | 0.396 | 3e-09 | |
| P20724 | 378 | Alkaline elastase YaB OS= | N/A | no | 0.094 | 0.203 | 0.367 | 4e-09 | |
| Q99405 | 380 | M-protease OS=Bacillus cl | no | no | 0.086 | 0.186 | 0.423 | 4e-09 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.601 | 0.259 | 0.217 | 1e-08 | |
| P27693 | 380 | Alkaline protease OS=Baci | N/A | no | 0.094 | 0.202 | 0.367 | 3e-08 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 283 bits (723), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 251/772 (32%), Positives = 368/772 (47%), Gaps = 120/772 (15%)
Query: 89 LYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLP----QGVW 144
LYS+ + GFA LT ++A+ L +P+V V D ++ T+Y+ +FLGL GVW
Sbjct: 72 LYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVW 131
Query: 145 TQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNI-SHFSGDCETGPRFPLSSCNG 203
++ G+G +IG +DTG+ P PSF + P+I + G C+ G F SSCN
Sbjct: 132 SK----SRFGQGTIIGVLDTGVWPESPSFDDTG--MPSIPRKWKGICQEGESFSSSSCNR 185
Query: 204 KIVSARFFSAGAQAV----ATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFY 259
K++ ARFF G + + N +++S D+ GHG+H AST G++ V G
Sbjct: 186 KLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGA 245
Query: 260 GLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGP-DEPPRDTITM 318
G+A GMAP A IAVYK + +D++AAID A D VD+L+LS+G P D
Sbjct: 246 GVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIA 305
Query: 319 LGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378
+G F A G+ V+ AAGN GP S+V + +PW A T DR +P + L NG
Sbjct: 306 IGTFR-----AMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANG 360
Query: 379 LKLGGV----GLSGPTCGRP---LFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFE 431
L G G GR ++++ + LR G+ PR EE
Sbjct: 361 KLLYGESLYPGKGIKNAGREVEVIYVTGGDKGSEFCLR--GSLPR-----EE-------- 405
Query: 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVP 491
++G +VIC D N S + A G + IL AN+ +P
Sbjct: 406 ---IRGKMVIC---DRGVNGRSEKGEAVKEA---GGVAMIL-ANTEINQEEDSIDVHLLP 455
Query: 492 GILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551
LI T ++L+ Y T +A I G RAP V++FS+RG
Sbjct: 456 ATLIGY--TESVLLKAYVNAT----------VKPKARIIFGGTVIGRSRAPEVAQFSARG 503
Query: 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTG-------CNFALLSGTSMA 604
P NP+ +LKPD+IAPG I AAW L P TG NF ++SGTSM+
Sbjct: 504 PSLA----NPS-ILKPDMIAPGVNIIAAWP--QNLGP--TGLPYDSRRVNFTVMSGTSMS 554
Query: 605 TPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFG 664
PH++GI ALI+ P+W+P I SA+ +TA YD G+ I +G + F G
Sbjct: 555 CPHVSGITALIRSAYPNWSPAAIKSALMTTADLYDRQGKAI-KDGNKPAGV-----FAIG 608
Query: 665 SGLVSATRALDPGLVLSVEFEDYISFLCSLA--DSDPVSIKAATGIWCNHSL-SHPA-NL 720
+G V+ +A++PGLV +++ DYI++LC+L SD ++I + CN L +P +L
Sbjct: 609 AGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAI-THKNVSCNGILRKNPGFSL 667
Query: 721 NLPSVTV--SAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPP----------- 767
N PS+ V + ++ R + NVG+ Y +V P G V + P
Sbjct: 668 NYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTL 727
Query: 768 ----WFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHI--VRIPLSV 813
WF + + N + F+ G++ S N + VR P+SV
Sbjct: 728 SYRVWFVLKKK---------NRGGKVASFAQGQLTWVNSHNLMQRVRSPISV 770
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 256/829 (30%), Positives = 400/829 (48%), Gaps = 108/829 (13%)
Query: 12 SSCAALLVLAISF--IGCFAEERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRL 69
SS A L+L + F + + ++ Y+V + + FDL+S+ Y + +
Sbjct: 7 SSTAFFLLLCLGFCHVSSSSSDQGTYIVHMAKSQM-------PSSFDLHSNWYDSSLRSI 59
Query: 70 MDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLM 129
DS + LY+++ ++GF+ LT +A L P V V + R +L
Sbjct: 60 SDSAEL-------------LYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELH 106
Query: 130 TSYTPQFLGLPQ---GVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHF 186
T+ TP FLGL + ++ + G + +V+G +DTG+ P S+++ F P S +
Sbjct: 107 TTRTPLFLGLDEHTADLFPEAGSYSD----VVVGVLDTGVWPESKSYSDEG-FGPIPSSW 161
Query: 187 SGDCETGPRFPLSSCNGKIVSARFFSAGAQA-VATLNTSVDFLSPFDAVGHGSHVASTAA 245
G CE G F S CN K++ ARFF+ G ++ + ++ S + SP D GHG+H +STAA
Sbjct: 162 KGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAA 221
Query: 246 GNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLS 305
G+ + G+ G A GMAP AR+AVYK + +D++AAID+A D V++L++S
Sbjct: 222 GSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMS 281
Query: 306 IGP--DEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAAC 363
+G + RD + +G F A G+ V +AGN GP+ S++ + +PW A
Sbjct: 282 LGGGMSDYYRDGVA-IGAF-----AAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAG 335
Query: 364 TTDRIYPGSLLLGNGLKLGGVGL-SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIE 422
T DR +P +LGNG GV L G P L + A + NG T I
Sbjct: 336 TLDRDFPALAILGNGKNFTGVSLFKGEAL--PDKLLPFIYAGNASNATNGNLCMTGTLI- 392
Query: 423 ECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-DF 481
P V+G +V+C D N V+ A G +G IL + G +
Sbjct: 393 ---------PEKVKGKIVMC---DRGINARVQKGDVVKAA---GGVGMILANTAANGEEL 437
Query: 482 VAEPIPFAVPGILIPKVSTSEI---ILQYYEQQTHRDERGVAIKFNAQAGIG-EGRVASF 537
VA+ L+P + E I+++Y V N A I G V
Sbjct: 438 VAD-------AHLLPATTVGEKAGDIIRHY----------VTTDPNPTASISILGTVVGV 480
Query: 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTG---CN 594
+ +P+V+ FSSRGP+ S P ++LKPD+IAPG I AAW+ + + +
Sbjct: 481 K-PSPVVAAFSSRGPN----SITP-NILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE 534
Query: 595 FALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITS 654
F ++SGTSM+ PH++G+AAL+K +P W+P I SA+ +TA K G+ ++ +I +
Sbjct: 535 FNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLL----DIAT 590
Query: 655 TYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDP----VSIKAATGIWC 710
ST FD G+G VS T A +PGL+ + EDY+ FLC+L + P VS + T C
Sbjct: 591 GKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYT---C 647
Query: 711 NHSLSHP-ANLNLPS--VTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPP 767
+ S S+ A+LN PS V V V + R++ +VG + G +S+ P
Sbjct: 648 DPSKSYSVADLNYPSFAVNVDGVG-AYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPA 706
Query: 768 WFTIAPQG-TQDLAIQFNV--TQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
+ + F V ++ G SFG I + H+V P+++
Sbjct: 707 VLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDG-KHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 219/734 (29%), Positives = 338/734 (46%), Gaps = 85/734 (11%)
Query: 89 LYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQGVWTQRG 148
L+++K + NGFAV LT +A+K+ + V V + +L T+ + FLG P V +
Sbjct: 70 LHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQ 129
Query: 149 GDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSA 208
+ N IV+G +DTGI P PSF + F P + G CET F CN KI+ A
Sbjct: 130 VESN----IVVGVLDTGIWPESPSFDDEG-FSPPPPKWKGTCETSNNF---RCNRKIIGA 181
Query: 209 RFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPC 268
R + G + D P D GHG+H ASTAAG + G G A G P
Sbjct: 182 RSYHIGRPI-----SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPL 236
Query: 269 ARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLF 328
ARIA YK + + D++AA D A DGVDI++LS+G P + + I
Sbjct: 237 ARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGS---FH 293
Query: 329 ARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSG 388
A G+ +AGN GP T S SPW ++ AA T DR + + +GNG GV ++
Sbjct: 294 AVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSIN- 352
Query: 389 PTCGRPLFLSKLVLARDVILRVNGTFPR-TPQYIEECQYPEAFEPSLVQGSVVICTFSDG 447
T + LV RD+ N F + T ++ + ++ P+L++G +V+C S G
Sbjct: 353 -TFDNQYY--PLVSGRDI---PNTGFDKSTSRFCTD----KSVNPNLLKGKIVVCEASFG 402
Query: 448 FYNQTSTLTAVINTAITLGFMGFILIANSH-YGDFVAEPIPFAVPGILIPKVSTSEIILQ 506
+ +L G G ++ +N+ Y D + P+P +V + ++++
Sbjct: 403 PHEFFKSLD---------GAAGVLMTSNTRDYAD--SYPLPSSV-------LDPNDLLAT 444
Query: 507 YYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLK 566
+ R K AP+V FSSRGP+ R DV+K
Sbjct: 445 LRYIYSIRSPGATIFK----------STTILNASAPVVVSFSSRGPN-----RATKDVIK 489
Query: 567 PDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626
PD+ PG +I AAW V+ + + F ++SGTSM+ PHI GIA +K +NP+W+P
Sbjct: 490 PDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAA 549
Query: 627 IASAISSTATKYDNYGQLIMAEGFEITSTYN-STHFDFGSGLVSATRALDPGLVLSVEFE 685
I SA+ +TA+ + + +N F +GSG V+ +A+ PGLV
Sbjct: 550 IKSALMTTAS--------------PMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANES 595
Query: 686 DYISFLCSLADSDPVSIKAATGIWCNHSLSHPA---NLNLPSVTVSAVAKSLILQ---RS 739
DY+ FLC + +++ TG + + + +LN PS +S Q R+
Sbjct: 596 DYVKFLCGQG-YNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRT 654
Query: 740 LKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVL 799
L +V + TY + P G T+S+ P + G + + V +I F ++
Sbjct: 655 LTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK-SFTLTVRGSIKGFVVSASLV 713
Query: 800 TGSLNHIVRIPLSV 813
H VR P+++
Sbjct: 714 WSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 224/780 (28%), Positives = 355/780 (45%), Gaps = 115/780 (14%)
Query: 65 QTKRLMDSHDRILQS---TLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
T+ + +H +L S + E K+YS+ N FA L+P +AKK+ +V V
Sbjct: 48 NTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVS 107
Query: 122 RDRRAKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEP 181
R++ KL T+ + F+GLP +++ ++IG +DTGI P SF ++ P
Sbjct: 108 RNQYRKLHTTKSWDFVGLPLTAKRHLKAERD----VIIGVLDTGITPDSESFLDHG-LGP 162
Query: 182 NISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVA 241
+ + G C GP + CN KI+ A++F A + SP D GHG+H +
Sbjct: 163 PPAKWKGSC--GPYKNFTGCNNKIIGAKYFKHDGNVPAG-----EVRSPIDIDGHGTHTS 215
Query: 242 STAAGNAGVPVVVDGFFYGLASGMA----PCARIAVYKAMYPTVGTL-ADVIAAIDQATM 296
ST AG +V + YG+A+G A P AR+A+YK + G D++A + A
Sbjct: 216 STVAG----VLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIH 271
Query: 297 DGVDILTLSIGPD--EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYS 354
DGV+I+++SIG + D+I+ +G F A R G+ V +AGN GP+ TV ++
Sbjct: 272 DGVEIISISIGGPIADYSSDSIS-VGSF-----HAMRKGILTVASAGNDGPSSGTVTNHE 325
Query: 355 PWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTF 414
PW + AA DR + + LGNG G+G+S S + ++ V+
Sbjct: 326 PWILTVAASGIDRTFKSKIDLGNGKSFSGMGIS--------MFSPKAKSYPLVSGVDAAK 377
Query: 415 PRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIA 474
+Y+ + ++ + V+G V++C G V +T + G G I+++
Sbjct: 378 NTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGG---------GVESTIKSYGGAGAIIVS 428
Query: 475 NSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRV 534
+ ++ F P + S +II +Y +A A I + R
Sbjct: 429 D----QYLDNAQIFMAPATSV-NSSVGDIIYRYINSTR-----------SASAVIQKTRQ 472
Query: 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDV--LKPDVIAPGHQIWAAWS---PVSALDPM 589
+ AP V+ FSSRGP NP + LKPD+ APG I AA++ ++ LD
Sbjct: 473 VTIP--APFVASFSSRGP-------NPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGD 523
Query: 590 LTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEG 649
F +LSGTSMA PH+AG+AA +K +P WTP I SAI ++A
Sbjct: 524 TQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAK------------- 570
Query: 650 FEITSTYNS-THFDFGSGLVSATRALDPGLVLSVEFEDYISFLCS----------LADSD 698
I+ N F +G G ++ RA PGLV ++ Y+ FLC L +
Sbjct: 571 -PISRRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTR 629
Query: 699 PVSIKAATGIWCNHSLSHPA-NLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHP 757
VS + + SL++P L L S S +A + +R + NVG + Y +V P
Sbjct: 630 SVSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLA---VFRRRVTNVGPPSSVYTATVRAP 686
Query: 758 NGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIV----LTGSLNHIVRIPLSV 813
G +++ P + + + F V + G+IV + S H VR P+ +
Sbjct: 687 KGVEITVEPQSLSFSKASQKR---SFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 194/501 (38%), Gaps = 113/501 (22%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSG----DCETGPR-FPLSSCNGKIVSA 208
G+GI + +DTG+ +HP + N + G D + P+ P G
Sbjct: 180 GKGIKVAIIDTGVEYNHPDL------KKNFGQYKGYDFVDNDYDPKETPTGDPRG----- 228
Query: 209 RFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPC 268
+A HG+HVA T A N G G+AP
Sbjct: 229 -----------------------EATDHGTHVAGTVAAN------------GTIKGVAPD 253
Query: 269 ARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGP--DEPPRDTITMLGIFDVL 325
A + Y+ + P GT +VIA +++A DG D++ LS+G + P T T L
Sbjct: 254 ATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALD----- 308
Query: 326 MLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVG 385
+A GV V + GN GP + W V + + + I G+ L L V
Sbjct: 309 --WAMSEGVVAVTSNGNSGP--------NGWTVGSPGTSREAISVGATQLP--LNEYAVT 356
Query: 386 LSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSV-VICTF 444
+ + + +K DV N I E + FE + G V V+
Sbjct: 357 FGSYSSAKVMGYNK---EDDVKALNNKEVELVEAGIGEAK---DFEGKDLTGKVAVVKRG 410
Query: 445 SDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEII 504
S F ++ + A G +G ++ N ++ I VPG+ +P + S
Sbjct: 411 SIAFVDKA-------DNAKKAGAIGMVVYNN------LSGEIEANVPGMSVPTIKLSLED 457
Query: 505 LQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDV 564
+ E K +GE +VA F R P++ + +
Sbjct: 458 GEKLVSALKAGETKTTFKLTVSKALGE-QVADFSSRGPVMDTW----------------M 500
Query: 565 LKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTP 624
+KPD+ APG I S + DP + GTSMA+PHIAG A+IKQ P W+
Sbjct: 501 IKPDISAPGVNIV---STIPTHDPDHP-YGYGSKQGTSMASPHIAGAVAVIKQAKPKWSV 556
Query: 625 TMIASAISSTA-TKYDNYGQL 644
I +AI +TA T D+ G++
Sbjct: 557 EQIKAAIMNTAVTLKDSDGEV 577
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM----LTGCNFALLS 599
V+ FSSRGP KPD++APG I + SP S +D + G + +S
Sbjct: 329 VASFSSRGPTVYGKE-------KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMS 381
Query: 600 GTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDN 640
GTSMATP AGIAALI Q NP TP + + + K+ +
Sbjct: 382 GTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDKWKD 422
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Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P20724|ELYA_BACYA Alkaline elastase YaB OS=Bacillus sp. (strain YaB) GN=ale PE=1 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + G +A +GTSMATPH+AG+AAL+KQ NPSW+ I
Sbjct: 300 DIVAPG----------VGVQSTVPGNGYASFNGTSMATPHVAGVAALVKQKNPSWSNVQI 349
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT N Q FGSGLV+A A
Sbjct: 350 RNHLKNTATNLGNTTQ-------------------FGSGLVNAEAA 376
|
Digests elastin efficiently, has a substrate preference for Ala in P1 position. Bacillus sp. (strain YaB) (taxid: 72578) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q99405|PRTM_BACSK M-protease OS=Bacillus clausii (strain KSM-K16) GN=aprE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 14/85 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG+AAL+KQ NPSW+ I
Sbjct: 302 DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQI 351
Query: 628 ASAISSTATKYDN---YGQ-LIMAE 648
+ + +TAT N YG L+ AE
Sbjct: 352 RNHLKNTATGLGNTNLYGSGLVNAE 376
|
Bacillus clausii (strain KSM-K16) (taxid: 66692) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 140/644 (21%), Positives = 240/644 (37%), Gaps = 151/644 (23%)
Query: 30 EERDIY---LVLIEGEPLAFHGSDDKRRFDLNSDAY-KGQTKRLMDSHDRILQSTLEIGS 85
+++DIY +V + P + +G+ R D +S A + +T +++ + + + ++
Sbjct: 87 QQQDIYVDVIVQMSAAPASENGT---LRTDYSSTAEIQQETNKVIAAQASVKAAVEQVTQ 143
Query: 86 YNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE-------RDRRAKLMTSYTPQFLG 138
S+ Y VNGF+ + KL+ VK V D +A M +
Sbjct: 144 QTAGESYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTLAKVYYPTDAKANSMANV------ 197
Query: 139 LPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPL 198
Q VW+ K GEG V+ +D+GI+P+H + + ++ D E +F
Sbjct: 198 --QAVWSNY---KYKGEGTVVSVIDSGIDPTHKDMRLSD--DKDVKLTKSDVE---KFTD 247
Query: 199 SSCNGKIVSARF---FSAGAQAVATLNTSVDFLSPFDAVGHGSHVA----STAAGNAGVP 251
++ +G+ +++ F+ + +VD HG HVA + G+
Sbjct: 248 TAKHGRYFNSKVPYGFNYADNNDTITDDTVDEQ-------HGMHVAGIIGANGTGDDPAK 300
Query: 252 VVVDGFFYGLASGMAPCARIAVYKAMY-----PTVGTLADVIAAIDQATMDGVDILTLSI 306
VV G+AP A++ K T G+ A +++AI+ + G D+L +S+
Sbjct: 301 SVV---------GVAPEAQLLAMKVFTNSDTSATTGS-ATLVSAIEDSAKIGADVLNMSL 350
Query: 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV---------------- 350
G D + T+ + A +G V +AGN G + S
Sbjct: 351 GSDSGNQ---TLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMV 407
Query: 351 ----VSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG--GVGLSGPTCGRPLFLSKLVLAR 404
S VA+A T ++ G GL+LG + LS K + +
Sbjct: 408 GTPGTSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQKKFYVVK 467
Query: 405 DVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVIC-----TFSDG-FYNQTSTLTAV 458
D N + + Y + +G + I TF+D Y Q +
Sbjct: 468 DA--SGNLSKGKVADYTADA-----------KGKIAIVKRGELTFADKQKYAQAA----- 509
Query: 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQ--QTHRDE 516
G G I++ N D A P+ P S + Q H D+
Sbjct: 510 -------GAAGLIIVNN----DGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVAAHPDD 558
Query: 517 R---GVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPG 573
+A+ E +++ F P+ ++LS P D+ APG
Sbjct: 559 SLGVKIALTLVPNQKYTEDKMSDFTSYGPV-----------SNLSFKP------DITAPG 601
Query: 574 HQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ 617
IW+ + + +SGTSMA+P IAG AL+KQ
Sbjct: 602 GNIWSTQN----------NNGYTNMSGTSMASPFIAGSQALLKQ 635
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P27693|ELYA_BACAO Alkaline protease OS=Bacillus alcalophilus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 29/106 (27%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D++APG + + + G +A L+GTSMATPH+AG AAL+KQ NPSW+ I
Sbjct: 302 DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 351
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
+ + +TAT + ST+ +GSGLV+A A
Sbjct: 352 RNHLKNTAT------------------SLGSTNL-YGSGLVNAEAA 378
|
Bacillus alcalophilus (taxid: 1445) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | ||||||
| 255554773 | 816 | subtilase, putative [Ricinus communis] g | 0.986 | 0.990 | 0.719 | 0.0 | |
| 359494848 | 822 | PREDICTED: subtilisin-like protease SDD1 | 0.981 | 0.978 | 0.697 | 0.0 | |
| 224115886 | 759 | predicted protein [Populus trichocarpa] | 0.915 | 0.988 | 0.741 | 0.0 | |
| 357480381 | 820 | Serine protease aprX [Medicago truncatul | 0.975 | 0.974 | 0.655 | 0.0 | |
| 356520093 | 819 | PREDICTED: subtilisin-like protease-like | 0.969 | 0.969 | 0.647 | 0.0 | |
| 16444944 | 832 | subtilisin-like serine protease [Arabido | 0.968 | 0.953 | 0.639 | 0.0 | |
| 30696690 | 832 | PA-domain containing subtilase-like prot | 0.968 | 0.953 | 0.636 | 0.0 | |
| 297837185 | 832 | hypothetical protein ARALYDRAFT_893252 [ | 0.969 | 0.954 | 0.634 | 0.0 | |
| 7940291 | 762 | F2401.7 [Arabidopsis thaliana] | 0.915 | 0.984 | 0.659 | 0.0 | |
| 449455457 | 790 | PREDICTED: subtilisin-like protease SDD1 | 0.951 | 0.986 | 0.590 | 0.0 |
| >gi|255554773|ref|XP_002518424.1| subtilase, putative [Ricinus communis] gi|223542269|gb|EEF43811.1| subtilase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 587/816 (71%), Positives = 684/816 (83%), Gaps = 8/816 (0%)
Query: 9 ANSSSCAALLVLAISFIGCFAEERDIYLVLIEGEPLAFHGSDD---KRRFDLNSDAYKGQ 65
A S S +LL++ + + C AEER IYLVL+EG+P+AF G + R+ +LNS+A +
Sbjct: 2 ATSISTYSLLLVFVISVACSAEERSIYLVLMEGQPVAFLGGHEPYTTRKLELNSEASQAH 61
Query: 66 TKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRR 125
+RL+DSHD++LQSTLEIGSY KLYSFK+ VNGFAVH T +QAKKL++AP VK+VERDR
Sbjct: 62 ARRLVDSHDQLLQSTLEIGSYTKLYSFKHIVNGFAVHATHSQAKKLKDAPGVKVVERDRG 121
Query: 126 AKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEP---N 182
AKLMT+YTPQFL L QGVWTQ GGD+NAGEGIVIGF+DTGINP HPSFA YNP P N
Sbjct: 122 AKLMTTYTPQFLELSQGVWTQEGGDRNAGEGIVIGFIDTGINPLHPSFA-YNPLNPFTSN 180
Query: 183 ISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAS 242
ISHFSG CETGPRFP SCNGKIVSARFFSAGAQAV+ LNTS+DFLSP+DAVGHGSHVAS
Sbjct: 181 ISHFSGACETGPRFPAGSCNGKIVSARFFSAGAQAVSPLNTSLDFLSPYDAVGHGSHVAS 240
Query: 243 TAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDIL 302
TAAGNA VPVV +GF+YG ASGMAP ARIAVYKA+YPTVGTL DVIAAIDQAT DGVDI+
Sbjct: 241 TAAGNARVPVVANGFYYGRASGMAPRARIAVYKAIYPTVGTLTDVIAAIDQATKDGVDII 300
Query: 303 TLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAA 362
TLS+GPDEPP DTIT L +FDV MLFA+RAGVFVVQAAGN GP+ STVVSYSPWAV AA
Sbjct: 301 TLSVGPDEPPEDTITFLSVFDVFMLFAQRAGVFVVQAAGNHGPSLSTVVSYSPWAVGVAA 360
Query: 363 CTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIE 422
TTDRIYP SLLLGNG K+GGVGLSGPT G LF KLV A+D + + NGTFPRTPQYIE
Sbjct: 361 STTDRIYPASLLLGNGQKVGGVGLSGPTFGYGLFKYKLVFAQDAV-KANGTFPRTPQYIE 419
Query: 423 ECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFV 482
ECQ+PE+ +P LV+ +VICTFS GFYN TS++TA+I+T+ TL F GF L+AN YGDF+
Sbjct: 420 ECQHPESLDPKLVRRRIVICTFSAGFYNGTSSITAIIDTSRTLRFTGFALVANPSYGDFI 479
Query: 483 AEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542
AEPIPFAVPGI+IPKV+ +EII +YYEQ+ RDERG KF A+ IGEGRVA+FEGRAP
Sbjct: 480 AEPIPFAVPGIMIPKVADAEIISKYYEQEILRDERGFVSKFCARGAIGEGRVAAFEGRAP 539
Query: 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTS 602
IVSRFSSRGPDF D++R P DVLKPD++APGHQIWAAWSP+SALDP+LTG NFALLSGTS
Sbjct: 540 IVSRFSSRGPDFLDINRIPADVLKPDILAPGHQIWAAWSPLSALDPILTGDNFALLSGTS 599
Query: 603 MATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFD 662
MATPHI GIAALIKQ +PSWTP+MIASA+S+TA YDNYG+LI+AEGF+I S Y STHFD
Sbjct: 600 MATPHIVGIAALIKQFHPSWTPSMIASALSTTAGNYDNYGELILAEGFDINSLYPSTHFD 659
Query: 663 FGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNL 722
G+G V+ TRA+DPGLV EF++YISFLCSL DP +KA TG CN SLS PANLNL
Sbjct: 660 LGAGFVNPTRAMDPGLVFPSEFQNYISFLCSLPGIDPAIVKATTGEPCNQSLSSPANLNL 719
Query: 723 PSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQ 782
PSVT+SA+ S ++R++KNVG K ETYL+SV+ PNGTTV+L P WF IAPQGTQ++ I+
Sbjct: 720 PSVTISALRGSQTVERNVKNVGIKPETYLSSVIAPNGTTVNLSPTWFIIAPQGTQNIDIE 779
Query: 783 FNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPVSI 818
F+VT A +FSFG+IVLTGSL+HIVRIPLS+ PV++
Sbjct: 780 FHVTHARNEFSFGQIVLTGSLDHIVRIPLSILPVTV 815
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494848|ref|XP_002267221.2| PREDICTED: subtilisin-like protease SDD1 [Vitis vinifera] gi|297741764|emb|CBI32993.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1177 bits (3044), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/811 (69%), Positives = 680/811 (83%), Gaps = 7/811 (0%)
Query: 14 CAALLVLAISFIGCFAEERDIYLVLIEGEPLAFH-GS---DDKRRFDLNSDAYKGQTKRL 69
CA LL+L ++F+ C AEER +YLVL+EG+P+AFH GS ++ +R D NS+ YK K L
Sbjct: 13 CAVLLLLLMAFMACHAEERGMYLVLMEGDPVAFHRGSGPLEEGKRVDPNSEVYKAHAKHL 72
Query: 70 MDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLM 129
+DSHD++LQ+TL+ GSYNKLYSFK+ VNGF+VH TP+QA KL++AP V LVERDR AKLM
Sbjct: 73 VDSHDQLLQTTLDSGSYNKLYSFKHIVNGFSVHTTPSQANKLKHAPGVTLVERDRGAKLM 132
Query: 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFAN--YNPFEPNISHFS 187
T+YTPQFLGLP+G+W+Q GGD NAGEG+VIGFVDTGINP HPSFA NP+ N SHF
Sbjct: 133 TTYTPQFLGLPEGIWSQEGGDANAGEGLVIGFVDTGINPLHPSFAYDPTNPYTSNTSHFK 192
Query: 188 GDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGN 247
G CE GP FP SSCNGKIVSARFFSAGAQA LNTS DFLSP DAVGHGSHVASTAAGN
Sbjct: 193 GTCEAGPGFPASSCNGKIVSARFFSAGAQAATNLNTSYDFLSPLDAVGHGSHVASTAAGN 252
Query: 248 AGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIG 307
GVPVV++GFFYG ASGMAP ARIAVYKA+YPTVGTL DV++A+DQATMDGVD+LTLSIG
Sbjct: 253 PGVPVVLNGFFYGRASGMAPRARIAVYKAIYPTVGTLTDVVSAMDQATMDGVDVLTLSIG 312
Query: 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDR 367
PD PP DT+T L +FD+ MLFARRAGVFVVQAAGNQGP PSTVVS+SPWAV AAA +TDR
Sbjct: 313 PDTPPEDTMTFLSVFDIFMLFARRAGVFVVQAAGNQGPGPSTVVSFSPWAVGAAASSTDR 372
Query: 368 IYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYP 427
YP +L+LGNG ++GGVGLSGPT G L KLVLA+D + +VNGTFPRT QY+EECQ+
Sbjct: 373 SYPSTLVLGNGQRIGGVGLSGPTLGNGLLQYKLVLAKDAV-KVNGTFPRTAQYVEECQFA 431
Query: 428 EAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIP 487
EA +P LVQGSVVIC FS GF+N STLTA+I+TA LGFMGF+L+AN +YGDF+AEP+P
Sbjct: 432 EALDPLLVQGSVVICIFSTGFFNGNSTLTAIIDTARALGFMGFVLVANPNYGDFIAEPLP 491
Query: 488 FAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547
F+VPGILIP+V+ ++II QYYEQQT+RD+ G+A++F+ +A IGEGR++ F GRAPIVSRF
Sbjct: 492 FSVPGILIPRVAETQIIAQYYEQQTYRDQTGLAVRFSGRAAIGEGRISFFTGRAPIVSRF 551
Query: 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPH 607
SSRGPDF D SR P DVLKPD++APGHQ+WAAWSP+S LDP+L+G +FALLSGTSMATPH
Sbjct: 552 SSRGPDFIDKSRKPVDVLKPDILAPGHQVWAAWSPISILDPILSGYSFALLSGTSMATPH 611
Query: 608 IAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGL 667
+AGIAALIKQ+NPSWTP+MIASA+S+TAT DN G+ IMAEG++I S Y STHFDFG+G
Sbjct: 612 VAGIAALIKQYNPSWTPSMIASAMSTTATIVDNLGEPIMAEGYDIGSLYLSTHFDFGAGF 671
Query: 668 VSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTV 727
+S A+DPGLVL+ FEDYISFLCSL + +P +I+A TG C L+H ++LNLPSVT+
Sbjct: 672 ISPNHAIDPGLVLTSGFEDYISFLCSLPNVNPATIRAITGGVCTQLLNHLSDLNLPSVTI 731
Query: 728 SAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQ 787
S + +L+++R++KN+G+K ETYL SV+ P G VSL PP FTI PQGTQDL IQ NVTQ
Sbjct: 732 SELRGTLLVRRNVKNIGSKQETYLCSVIPPKGVMVSLNPPSFTIVPQGTQDLEIQLNVTQ 791
Query: 788 AIGDFSFGEIVLTGSLNHIVRIPLSVKPVSI 818
A+ D+SFG I+LTGSLNHIVRIP+SV PVS+
Sbjct: 792 AMEDYSFGGIILTGSLNHIVRIPISVLPVSV 822
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115886|ref|XP_002317149.1| predicted protein [Populus trichocarpa] gi|222860214|gb|EEE97761.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1145 bits (2963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/753 (74%), Positives = 634/753 (84%), Gaps = 3/753 (0%)
Query: 67 KRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRA 126
K L+DSHD++LQS L+ GSYNKLYSFK+ VNGF+VH TP+QA KL+ AP VKLVE+DR A
Sbjct: 6 KHLVDSHDQLLQSNLKTGSYNKLYSFKHIVNGFSVHTTPSQANKLKVAPGVKLVEKDRGA 65
Query: 127 KLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFAN--YNPFEPNIS 184
KLMT+YTPQFLGLPQ VW + GGDKN GEGIVIGFVDTGI P HPSF NPF NIS
Sbjct: 66 KLMTTYTPQFLGLPQEVWAKEGGDKNGGEGIVIGFVDTGITPEHPSFTYDPLNPFTSNIS 125
Query: 185 HFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTA 244
HFSG CETGPRFP SSCNGKIVSAR+FSAGAQA+ATLNTSVDFLSPFDA GHGSHVAS A
Sbjct: 126 HFSGACETGPRFPSSSCNGKIVSARYFSAGAQAIATLNTSVDFLSPFDAAGHGSHVASIA 185
Query: 245 AGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTL 304
AGNAGVPV+VDGF+YG ASGMAP ARIAVYKA+YPTVGT+ DV+AAIDQATMDGVDILTL
Sbjct: 186 AGNAGVPVIVDGFYYGRASGMAPRARIAVYKAVYPTVGTITDVVAAIDQATMDGVDILTL 245
Query: 305 SIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT 364
S+GPDEPP DTIT L +FDV MLFARRAGVFV QAAGN GP STVVSYSPWAV AAC+
Sbjct: 246 SVGPDEPPEDTITFLSVFDVFMLFARRAGVFVAQAAGNHGPDFSTVVSYSPWAVGVAACS 305
Query: 365 TDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEEC 424
TDR YPGSLLLGNGLK+GGVGLSGP+ G FL KLVLA+D + RVNG FPRTP Y+EEC
Sbjct: 306 TDRSYPGSLLLGNGLKVGGVGLSGPSFGDGEFLCKLVLAKDAV-RVNGAFPRTPAYVEEC 364
Query: 425 QYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAE 484
Q+PEA +P +V+G +VIC FS GFYN TS + A+I+TA TLGFMGF +AN YGDF+AE
Sbjct: 365 QFPEALDPIIVRGRIVICVFSAGFYNGTSNINAIIDTARTLGFMGFAFVANPAYGDFIAE 424
Query: 485 PIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIV 544
PIPFAV GI+IPKV+ ++II QYYEQ RDERG I++ A+A I EGRVASF G+APIV
Sbjct: 425 PIPFAVSGIIIPKVADAQIISQYYEQNIQRDERGFVIQYCARAAIREGRVASFVGQAPIV 484
Query: 545 SRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMA 604
SRFSSRGPDF D++RNP DVLKPD++APGHQIWAAWSP+SAL+P+LTG +FALLSGTSMA
Sbjct: 485 SRFSSRGPDFVDINRNPADVLKPDILAPGHQIWAAWSPLSALEPILTGYHFALLSGTSMA 544
Query: 605 TPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFG 664
TPH GIAALIKQ+NPSWTP+MIASAIS+TATKYDNYG++I+AEG + S Y STHFD G
Sbjct: 545 TPHTVGIAALIKQYNPSWTPSMIASAISTTATKYDNYGEVILAEGSYLNSYYPSTHFDSG 604
Query: 665 SGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPS 724
+GLV+ RA+DPGLVL EFED+I+FLCSL D I AATG CN SLSHPANLNLPS
Sbjct: 605 AGLVNPARAIDPGLVLPAEFEDHINFLCSLPGIDWSVINAATGERCNRSLSHPANLNLPS 664
Query: 725 VTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFN 784
VT+S + SL ++RSLKN G++ ETY SV+ PNGT V+L P WF IAPQ QD+ IQF
Sbjct: 665 VTISTLRNSLTVKRSLKNGGSRPETYTCSVISPNGTMVNLSPTWFRIAPQEIQDIEIQFR 724
Query: 785 VTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPVS 817
V QA G+FSFGEIVLTGSLNHIVR+PLSV P+S
Sbjct: 725 VIQAGGEFSFGEIVLTGSLNHIVRLPLSVLPIS 757
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357480381|ref|XP_003610476.1| Serine protease aprX [Medicago truncatula] gi|357497955|ref|XP_003619266.1| Serine protease aprX [Medicago truncatula] gi|355494281|gb|AES75484.1| Serine protease aprX [Medicago truncatula] gi|355511531|gb|AES92673.1| Serine protease aprX [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1086 bits (2808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/804 (65%), Positives = 632/804 (78%), Gaps = 5/804 (0%)
Query: 17 LLVLAISFIGCFAEERDIYLVLIEGEPLAFHGS---DDKRRFDLNSDAYKGQTKRLMDSH 73
+L+ IS CF EER IYLVL+EGE +AFHG+ +D + L A K K L+ SH
Sbjct: 17 ILIFLISITCCFQEERSIYLVLLEGEAVAFHGASQNEDSSKIHLIRGASKAHEKYLLASH 76
Query: 74 DRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYT 133
D +LQSTLE GSYNKL+S+K+ +NGF+VH TP+QAK+L P VKLVE+DR KLMT+YT
Sbjct: 77 DMLLQSTLENGSYNKLHSYKHIINGFSVHTTPSQAKRLRATPGVKLVEKDRGVKLMTTYT 136
Query: 134 PQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETG 193
P FL LP+G+W Q GGDKNAG+GIVIG VD+GINP HPSFA Y PF NISHFSG CETG
Sbjct: 137 PDFLNLPKGLWAQVGGDKNAGDGIVIGIVDSGINPIHPSFA-YQPFTSNISHFSGACETG 195
Query: 194 PRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVV 253
P FP SCNGKI+SA++FSAGAQA T + SVDFLSPFDA GHGSHVAS AAGNAGVPVV
Sbjct: 196 PHFPPGSCNGKIISAKYFSAGAQASPTFDASVDFLSPFDAGGHGSHVASIAAGNAGVPVV 255
Query: 254 VDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPR 313
V+GFFYG ASGMAP ARIAVYKA+YP+ GT+AD +AAI+QA DGVDI++LSIGP+EP +
Sbjct: 256 VNGFFYGQASGMAPRARIAVYKAIYPSGGTMADAVAAIEQAVQDGVDIISLSIGPNEPTK 315
Query: 314 DTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSL 373
DT+T L IFD+ +LFAR+AGV VVQAAGN GP+ STVVS+SPW+V AAC TDR Y S+
Sbjct: 316 DTLTFLNIFDITLLFARKAGVLVVQAAGNNGPSSSTVVSFSPWSVGVAACNTDRHYYSSI 375
Query: 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPS 433
LL NG +GGVGL+GP+ G LVLA+D + ++NGTFPRTP+Y+EECQ+PEA +PS
Sbjct: 376 LLRNGTIVGGVGLTGPSFGNGKVYHTLVLAKDAV-KINGTFPRTPEYLEECQHPEALDPS 434
Query: 434 LVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGI 493
V GS++ICTFS+GF NQTSTL A+I+TA L F GFI AN YGD++AEPIPF +PGI
Sbjct: 435 KVFGSIIICTFSEGFLNQTSTLAAIIDTAKALKFEGFIFTANPSYGDYIAEPIPFGIPGI 494
Query: 494 LIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPD 553
LIP V+ S++I+QYYE+ T RDERG +F A A GEGR ASF+GR+P+VSRFSSRGPD
Sbjct: 495 LIPSVADSKVIMQYYEEHTKRDERGTVTEFGAAASTGEGRDASFKGRSPVVSRFSSRGPD 554
Query: 554 FTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAA 613
D R DVLKPD++APGHQIWAAWSP+SA PMLTG NFALLSGTSMA PH+AGIAA
Sbjct: 555 IIDSKRTLADVLKPDILAPGHQIWAAWSPISAKQPMLTGHNFALLSGTSMAAPHVAGIAA 614
Query: 614 LIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673
LIKQHNPSWTP+MIASAI++T+ KYD G +MAEG+E + + ST F+ G+G+V +R
Sbjct: 615 LIKQHNPSWTPSMIASAITTTSRKYDKLGDPLMAEGYEANTLHPSTPFEHGAGIVDPSRV 674
Query: 674 LDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSAVAKS 733
+PGLVLS ++ED+ISFLCSL + D +I ATG CN +P+NLNLPSVT+SA+ S
Sbjct: 675 NNPGLVLSSDYEDFISFLCSLPNIDTKTITRATGETCNSPFDYPSNLNLPSVTISALKGS 734
Query: 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFS 793
+ L+R++ NVGN TETYL V PN T V+LYP +FTI PQGTQDL IQ NVTQ DFS
Sbjct: 735 IYLKRTVMNVGNSTETYLCGVRAPNRTAVNLYPTFFTITPQGTQDLEIQINVTQPSEDFS 794
Query: 794 FGEIVLTGSLNHIVRIPLSVKPVS 817
FGEIVL GS+NHIVRI LSV PVS
Sbjct: 795 FGEIVLAGSMNHIVRITLSVVPVS 818
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520093|ref|XP_003528700.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/812 (64%), Positives = 645/812 (79%), Gaps = 18/812 (2%)
Query: 17 LLVLAISFIGCFAEERDIYLVLIEGEPLAFH---GSDDKRRFDL----NSDAYKGQTKRL 69
LV+AI+ CF EER IYLVL+EG+ LAFH GS D+ + N +A K T L
Sbjct: 16 FLVVAIT---CFQEERSIYLVLLEGDALAFHDHEGSQDQDSSTIHPNTNREASKAHTNHL 72
Query: 70 MDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLM 129
+ SHD +LQS+LE GSYNKL+S+K+ +NGF+VH TP+QA +L +P VKLVE+DR AK+
Sbjct: 73 LASHDLLLQSSLENGSYNKLHSYKHIINGFSVHTTPSQAARLRRSPGVKLVEKDRGAKMR 132
Query: 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEP---NISHF 186
T+YTP+FL L +G+W Q GG++NAGEG+VIGFVD+GIN HPSFA Y+P P N+S F
Sbjct: 133 TTYTPEFLSLRKGIWAQEGGERNAGEGVVIGFVDSGINALHPSFA-YDPMHPFSSNLSRF 191
Query: 187 SGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG 246
G CETGP FP SSCNGKIV+ARFFSAGA+A TLN S+DFLSPFDA GHGSHVAS AAG
Sbjct: 192 EGACETGPLFPPSSCNGKIVAARFFSAGAEATVTLNASMDFLSPFDADGHGSHVASVAAG 251
Query: 247 NAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSI 306
NAGV VVV+GFFYG ASGMAP ARIAVYKA++P+VGTLADVIAAIDQA +DGVDIL+LS+
Sbjct: 252 NAGVSVVVNGFFYGKASGMAPRARIAVYKAIFPSVGTLADVIAAIDQAVLDGVDILSLSV 311
Query: 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTD 366
GP+EPP T+T L +FD+ +LFAR+AGVFVVQAAGN+GPA S+VVS+SPW+V AACTTD
Sbjct: 312 GPNEPPESTVTFLSMFDISLLFARKAGVFVVQAAGNKGPASSSVVSFSPWSVGVAACTTD 371
Query: 367 RIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQY 426
R YP SLLLGNG L G GLSGPT G L KLVLA+D + ++NGT T +YIEECQ+
Sbjct: 372 RRYPASLLLGNGSVLNGAGLSGPTFGNGSVLHKLVLAKDAV-KINGT---TQEYIEECQH 427
Query: 427 PEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPI 486
PE +P++V GS++ICTFS GF N TSTL A+I T+ LG GFIL+AN +YGD++AEPI
Sbjct: 428 PEVLDPNIVLGSIIICTFSTGFNNGTSTLNAIIGTSKALGLEGFILVANPNYGDYIAEPI 487
Query: 487 PFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546
PFAV GI+IP+V +++ILQYYE+Q RD +G A +F A A +GEGRVASF GR+PIVSR
Sbjct: 488 PFAVSGIMIPRVDDAKVILQYYEEQIKRDRKGTATEFGAMAAVGEGRVASFTGRSPIVSR 547
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
FSSRGPD D+ N DVLKPD++APGHQIWAAW+P+SAL+PML G +FALLSGTSM+TP
Sbjct: 548 FSSRGPDIIDMHNNLADVLKPDILAPGHQIWAAWTPISALEPMLKGHDFALLSGTSMSTP 607
Query: 607 HIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSG 666
H+AGIAALIKQ+NP WTP MIASAIS+T++KYDN G+ +MAEGFE +S ST F++G+G
Sbjct: 608 HVAGIAALIKQYNPLWTPAMIASAISTTSSKYDNLGEHMMAEGFEASSLLPSTPFEYGAG 667
Query: 667 LVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVT 726
VS A+DPGLVLS E +D+ISFLCSL + D +I AATG CNH ++P +LN+PSVT
Sbjct: 668 FVSPNCAIDPGLVLSSEHQDFISFLCSLPNMDTDAIIAATGEQCNHPFAYPFSLNIPSVT 727
Query: 727 VSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVT 786
+SA+ S+ + R+ +VGN TETYL SV PNGT V LYP WFTI+PQGTQDL IQ +V
Sbjct: 728 ISALRGSVSVWRTFMSVGNNTETYLASVQPPNGTKVYLYPTWFTISPQGTQDLEIQLSVI 787
Query: 787 QAIGDFSFGEIVLTGSLNHIVRIPLSVKPVSI 818
Q + +F+FGEIVLTG+LNHIVRI LSV +S+
Sbjct: 788 QPMSNFTFGEIVLTGNLNHIVRITLSVLAISV 819
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|16444944|dbj|BAB70678.1| subtilisin-like serine protease [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/820 (63%), Positives = 626/820 (76%), Gaps = 27/820 (3%)
Query: 17 LLVLAISFIGCFAEERD-----------IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQ 65
+ VL + I AEE+ IY VL+EGEPLAF S + +NS A +
Sbjct: 20 IFVLVVCAILSRAEEKQGKDENNDHIPKIYSVLVEGEPLAFRASTN-----INSKAMALE 74
Query: 66 TKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRR 125
K++ + H+ IL STLE GSY KLYSFK+ +N FAV T +QAKKL VK VE D+
Sbjct: 75 AKKIEEIHEEILGSTLEKGSYTKLYSFKHVINAFAVRTTASQAKKLRKTKGVKAVEEDKG 134
Query: 126 AKLMTSYTPQFLGLPQGVWTQ--RGGDKNAGEGIVIGFVDTGINPSHPSFANY---NPFE 180
KLMT+YTP FL LPQ VW + GD+ AGE IVIGFVDTGINP+HPSFA NP+
Sbjct: 135 VKLMTTYTPDFLELPQQVWPKISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYS 194
Query: 181 PNIS--HFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGS 238
NIS HFSGDCE GP FP SCNGKI+SARFFSAGA+A L++S+D LSPFDA GHGS
Sbjct: 195 SNISRLHFSGDCEIGPLFPPGSCNGKIISARFFSAGARASGALSSSLDILSPFDASGHGS 254
Query: 239 HVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDG 298
HVAS AAGNAGVPV++DGFFYG ASGMAP ARIAVYKA+YP++GTL DVIAAIDQA MDG
Sbjct: 255 HVASIAAGNAGVPVIIDGFFYGRASGMAPRARIAVYKAIYPSIGTLVDVIAAIDQAIMDG 314
Query: 299 VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAV 358
VD+LTLS+GPDEPP D T+LGIFD+ ML AR+AGVFVVQA GN GP+PS+V+SYSPW V
Sbjct: 315 VDVLTLSVGPDEPPVDKPTVLGIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVV 374
Query: 359 AAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTF--PR 416
AA TDR YP SL+L G + GVGLSGPT G PL +LVLA+D + R NG+ P
Sbjct: 375 GVAAGNTDRSYPASLILDGGQTVQGVGLSGPTLGAPLVQHRLVLAKDAV-RTNGSVLQPL 433
Query: 417 TPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANS 476
T + IEECQ PE F+P+ V GS+VICTFSDGFYNQ ST+ A+ TA TLGFMGFILIAN
Sbjct: 434 T-RDIEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTARTLGFMGFILIANP 492
Query: 477 HYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVAS 536
+GD+VAEP+ F+ PGILIP VS ++IIL+YYE++T RD RGVA +F A+A I EGR +
Sbjct: 493 RFGDYVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRDTRGVATQFGARARIDEGRNSI 552
Query: 537 FEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFA 596
F G+AP+VSRFSSRGP F D +R+P DVLKPD++APGHQIW AWS SA DP+LTG +FA
Sbjct: 553 FAGQAPVVSRFSSRGPAFIDANRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFA 612
Query: 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTY 656
+LSGTSMATPHIAGI ALIKQ NPSWTP MIASAIS+TA +YD+ G++I AE +E++ +
Sbjct: 613 ILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSTGEIISAEYYELSRLF 672
Query: 657 NSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSH 716
S HFD G+G V+ RALDPGLVL FEDYISFLCSL + P +I+ ATG+ C +LSH
Sbjct: 673 PSNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNISPATIRDATGVLCTTTLSH 732
Query: 717 PANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGT 776
PANLN PSVT+SA+ +SL+++RS +NV NKTETYL SV+ PNGTTV L P WFT+ PQ T
Sbjct: 733 PANLNHPSVTISALKESLVVRRSFQNVSNKTETYLGSVLPPNGTTVRLTPTWFTVPPQKT 792
Query: 777 QDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816
QDL I+FNVTQ + F+FGE+VLTGSLNHI+RIPLSVK +
Sbjct: 793 QDLDIEFNVTQVLNKFTFGEVVLTGSLNHIIRIPLSVKTI 832
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696690|ref|NP_564793.2| PA-domain containing subtilase-like protein [Arabidopsis thaliana] gi|332195835|gb|AEE33956.1| PA-domain containing subtilase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/820 (63%), Positives = 626/820 (76%), Gaps = 27/820 (3%)
Query: 17 LLVLAISFIGCFAEERD-----------IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQ 65
+ VL + I AEE++ IY +L+EGEPLAF S + +NS A +
Sbjct: 20 IFVLVVCAILSRAEEKEGKGENDDHIPKIYSILVEGEPLAFRASTN-----INSKAMALE 74
Query: 66 TKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRR 125
K++ + HD IL STLE GSY KLYSFK+ +N AV T +QAKKL VK VE D+
Sbjct: 75 AKKIEEIHDEILGSTLEKGSYTKLYSFKHVINAIAVRTTASQAKKLGKTKGVKAVEEDKG 134
Query: 126 AKLMTSYTPQFLGLPQGVWTQ--RGGDKNAGEGIVIGFVDTGINPSHPSFANY---NPFE 180
KLMT+YTP FL LPQ VW + GD+ AGE IVIGFVDTGINP+HPSFA NP+
Sbjct: 135 VKLMTTYTPDFLELPQQVWQKISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYS 194
Query: 181 PNIS--HFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGS 238
N+S HFSGDCE GP FP SCNGKI+SARFFSAGA+A LN+S+D LSPFDA GHGS
Sbjct: 195 SNLSRLHFSGDCEIGPFFPPGSCNGKIISARFFSAGARASGALNSSLDILSPFDASGHGS 254
Query: 239 HVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDG 298
HVAS AAGNAGVPV+VDGFFYG ASGMAP +RIAVYKA+YP++GTL DVIAAIDQA MDG
Sbjct: 255 HVASIAAGNAGVPVIVDGFFYGRASGMAPRSRIAVYKAIYPSIGTLVDVIAAIDQAIMDG 314
Query: 299 VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAV 358
VD+LTLS+GPDEPP D T+LGIFD+ ML AR+AGVFVVQA GN GP+PS+V+SYSPW V
Sbjct: 315 VDVLTLSVGPDEPPVDKPTVLGIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVV 374
Query: 359 AAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTF--PR 416
AA TDR YP L+L G + GVGLSGPT G PL +LVLA+D + R NG+ P
Sbjct: 375 GVAAGNTDRSYPAPLILDGGQTVQGVGLSGPTLGAPLVQHRLVLAKDAV-RTNGSVLQPL 433
Query: 417 TPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANS 476
T + IEECQ PE F+P+ V GS+VICTFSDGFYNQ ST+ A+ TA TLGFMGFILIAN
Sbjct: 434 T-RDIEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTARTLGFMGFILIANP 492
Query: 477 HYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVAS 536
+GD+VAEP+ F+ PGILIP VS ++IIL+YYE++T RD RGVA +F A+A IGEGR +
Sbjct: 493 RFGDYVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRDTRGVATQFGARARIGEGRNSV 552
Query: 537 FEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFA 596
F G+AP+VSRFSSRGP F D +R+P DVLKPD++APGHQIW AWS SA DP+LTG +FA
Sbjct: 553 FAGKAPVVSRFSSRGPAFIDATRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFA 612
Query: 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTY 656
+LSGTSMATPHIAGI ALIKQ NPSWTP MIASAIS+TA +YD+ G++I AE +E++ +
Sbjct: 613 ILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISAEYYELSRLF 672
Query: 657 NSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSH 716
S HFD G+G V+ RALDPGLVL FEDYISFLCSL + P +I+ ATG+ C +LSH
Sbjct: 673 PSNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNISPATIRDATGVLCTTTLSH 732
Query: 717 PANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGT 776
PANLN PSVT+SA+ +SL+++RS ++V NKTETYL SV+ PNGTTV L P WFT+ PQ T
Sbjct: 733 PANLNHPSVTISALKESLVVRRSFQDVSNKTETYLGSVLPPNGTTVRLTPTWFTVPPQKT 792
Query: 777 QDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816
QDL I+FNVTQ + F+FGE+VLTGSLNHI+RIPLSVK +
Sbjct: 793 QDLDIEFNVTQVLNKFTFGEVVLTGSLNHIIRIPLSVKTI 832
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297837185|ref|XP_002886474.1| hypothetical protein ARALYDRAFT_893252 [Arabidopsis lyrata subsp. lyrata] gi|297332315|gb|EFH62733.1| hypothetical protein ARALYDRAFT_893252 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/819 (63%), Positives = 629/819 (76%), Gaps = 25/819 (3%)
Query: 17 LLVLAISFIGCFAEERD-----------IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQ 65
+ VL + I AEE++ IY VL+EGEPLAF S + +NS A +
Sbjct: 20 IFVLIVCSILSRAEEKEGKNENDDHIPKIYSVLVEGEPLAFRASTN-----INSKAMAYE 74
Query: 66 TKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRR 125
K++++ HD IL STLE GSY KLYSFK+ +N FAV T +QAKKL+ VK VE D+
Sbjct: 75 AKKIVEIHDEILGSTLENGSYTKLYSFKHVINAFAVRTTASQAKKLKKTKGVKAVEEDKG 134
Query: 126 AKLMTSYTPQFLGLPQGVWTQ--RGGDKNAGEGIVIGFVDTGINPSHPSFANY---NPFE 180
KLMT+YTP FL LPQ VW + G + AGE IVIGFVDTGINP+HPSFA NP+
Sbjct: 135 VKLMTTYTPDFLELPQQVWPKISSEGGRRAGEDIVIGFVDTGINPTHPSFAALDLTNPYS 194
Query: 181 PNISH--FSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGS 238
N+S FSGDCETGP FP SCNGKI+SARFFSAGA+A LN+S+D LSPFDA GHGS
Sbjct: 195 SNLSRLKFSGDCETGPLFPAGSCNGKIISARFFSAGARASVALNSSLDILSPFDASGHGS 254
Query: 239 HVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDG 298
HVAS AAGNAGVPV+VDGFFYG ASGMAP ARIAVYKA+YP++GTL DVIAAIDQA MDG
Sbjct: 255 HVASIAAGNAGVPVIVDGFFYGQASGMAPRARIAVYKAIYPSIGTLVDVIAAIDQAIMDG 314
Query: 299 VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAV 358
VD+LTLS+GPDEPP D T+LGIFD+ ML AR+AGVFVVQA GN GP+PS+V+SYSPW V
Sbjct: 315 VDVLTLSVGPDEPPVDKPTVLGIFDLSMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWVV 374
Query: 359 AAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTP 418
AA +TDR YP SL+L G + GVGLSGPT G PL +LVLARD + R NG+ +
Sbjct: 375 GVAAGSTDRSYPASLILDGGQTVYGVGLSGPTLGAPLLQHRLVLARDAV-RTNGSVLQPL 433
Query: 419 QY-IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477
+ IEECQ PE F+P+ V G++VICTFSDGFYNQ ST+ A+ TA LGFMGFILIAN
Sbjct: 434 RSDIEECQRPENFDPAAVFGTIVICTFSDGFYNQMSTVRAITQTARNLGFMGFILIANPR 493
Query: 478 YGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASF 537
+GD+VAEP+ F+ PGILIP VS ++IIL+YYE++T+RD+RG+ +F A+ I EGR + F
Sbjct: 494 FGDYVAEPVLFSAPGILIPTVSAAQIILRYYEEKTYRDKRGIVTQFGARGRIDEGRNSVF 553
Query: 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFAL 597
G+AP+VSRFSSRGP F D +RN DVLKPD++APGHQIW AWS SA DP+LTG +FA+
Sbjct: 554 AGKAPVVSRFSSRGPAFIDANRNLLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSFAI 613
Query: 598 LSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYN 657
LSGTSMATPHIAGI ALIKQ NPSWTP MIASAIS+TA +YD+ G++I AE +EI+ +
Sbjct: 614 LSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSSGEVISAESYEISGLFP 673
Query: 658 STHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHP 717
S HFD G+G V+ RALDPGLVL FEDYISFLCSL + +PV+I+AATG+ C +LSHP
Sbjct: 674 SNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNINPVTIRAATGVSCTTALSHP 733
Query: 718 ANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQ 777
ANLN PSVT+SA+ +SL+++RS +NV NKTETYL SV+ PNGTTV L P +FT+ PQ TQ
Sbjct: 734 ANLNHPSVTISALKESLVVRRSFQNVSNKTETYLGSVLPPNGTTVRLTPSYFTVPPQRTQ 793
Query: 778 DLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816
DL I+FN+TQ + F+FGE+VLTGSLNHI+RIPLSVK +
Sbjct: 794 DLDIEFNITQVLTKFTFGEVVLTGSLNHIIRIPLSVKTI 832
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7940291|gb|AAF70850.1|AC003113_17 F2401.7 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1013 bits (2618), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/761 (65%), Positives = 598/761 (78%), Gaps = 11/761 (1%)
Query: 65 QTKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDR 124
+ K++ + HD IL STLE GSY KLYSFK+ +N AV T +QAKKL VK VE D+
Sbjct: 4 EAKKIEEIHDEILGSTLEKGSYTKLYSFKHVINAIAVRTTASQAKKLGKTKGVKAVEEDK 63
Query: 125 RAKLMTSYTPQFLGLPQGVWTQ--RGGDKNAGEGIVIGFVDTGINPSHPSFANY---NPF 179
KLMT+YTP FL LPQ VW + GD+ AGE IVIGFVDTGINP+HPSFA NP+
Sbjct: 64 GVKLMTTYTPDFLELPQQVWQKISNEGDRRAGEDIVIGFVDTGINPTHPSFAALDLTNPY 123
Query: 180 EPNIS--HFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237
N+S HFSGDCE GP FP SCNGKI+SARFFSAGA+A LN+S+D LSPFDA GHG
Sbjct: 124 SSNLSRLHFSGDCEIGPFFPPGSCNGKIISARFFSAGARASGALNSSLDILSPFDASGHG 183
Query: 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMD 297
SHVAS AAGNAGVPV+VDGFFYG ASGMAP +RIAVYKA+YP++GTL DVIAAIDQA MD
Sbjct: 184 SHVASIAAGNAGVPVIVDGFFYGRASGMAPRSRIAVYKAIYPSIGTLVDVIAAIDQAIMD 243
Query: 298 GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWA 357
GVD+LTLS+GPDEPP D T+LGIFD+ ML AR+AGVFVVQA GN GP+PS+V+SYSPW
Sbjct: 244 GVDVLTLSVGPDEPPVDKPTVLGIFDLAMLLARKAGVFVVQAVGNNGPSPSSVLSYSPWV 303
Query: 358 VAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTF--P 415
V AA TDR YP L+L G + GVGLSGPT G PL +LVLA+D + R NG+ P
Sbjct: 304 VGVAAGNTDRSYPAPLILDGGQTVQGVGLSGPTLGAPLVQHRLVLAKDAV-RTNGSVLQP 362
Query: 416 RTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIAN 475
T + IEECQ PE F+P+ V GS+VICTFSDGFYNQ ST+ A+ TA TLGFMGFILIAN
Sbjct: 363 LT-RDIEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTARTLGFMGFILIAN 421
Query: 476 SHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVA 535
+GD+VAEP+ F+ PGILIP VS ++IIL+YYE++T RD RGVA +F A+A IGEGR +
Sbjct: 422 PRFGDYVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRDTRGVATQFGARARIGEGRNS 481
Query: 536 SFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNF 595
F G+AP+VSRFSSRGP F D +R+P DVLKPD++APGHQIW AWS SA DP+LTG +F
Sbjct: 482 VFAGKAPVVSRFSSRGPAFIDATRSPLDVLKPDILAPGHQIWGAWSLPSAFDPILTGRSF 541
Query: 596 ALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITST 655
A+LSGTSMATPHIAGI ALIKQ NPSWTP MIASAIS+TA +YD+ G++I AE +E++
Sbjct: 542 AILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDSNGEIISAEYYELSRL 601
Query: 656 YNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLS 715
+ S HFD G+G V+ RALDPGLVL FEDYISFLCSL + P +I+ ATG+ C +LS
Sbjct: 602 FPSNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNISPATIRDATGVLCTTTLS 661
Query: 716 HPANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQG 775
HPANLN PSVT+SA+ +SL+++RS ++V NKTETYL SV+ PNGTTV L P WFT+ PQ
Sbjct: 662 HPANLNHPSVTISALKESLVVRRSFQDVSNKTETYLGSVLPPNGTTVRLTPTWFTVPPQK 721
Query: 776 TQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816
TQDL I+FNVTQ + F+FGE+VLTGSLNHI+RIPLSVK +
Sbjct: 722 TQDLDIEFNVTQVLNKFTFGEVVLTGSLNHIIRIPLSVKTI 762
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455457|ref|XP_004145469.1| PREDICTED: subtilisin-like protease SDD1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/809 (59%), Positives = 601/809 (74%), Gaps = 30/809 (3%)
Query: 18 LVLAISF---IGCF-AEERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSH 73
L ISF + C+ AE+R+I+LV++E + G D+ R + + DSH
Sbjct: 1 LFYVISFDHLVSCYHAEKREIFLVVMEDD-----GGDELRS--------NKEMLLIEDSH 47
Query: 74 DRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYT 133
++L+++++ +Y KL+SFK +NGFAVH TP++A KL A VKLVE DR + MT+YT
Sbjct: 48 KKVLENSIK--NYRKLHSFKKILNGFAVHTTPSEASKLREANGVKLVELDRGVRKMTTYT 105
Query: 134 PQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD---C 190
P+FLGL + + G+GI+IGFVD+GI P+HPSF+N N D C
Sbjct: 106 PEFLGLVKNNNDYKYNYSGGGDGILIGFVDSGIYPTHPSFSN------NFGKEDDDELVC 159
Query: 191 ETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGV 250
E GP FP CNGKIVSARFFSAGAQA A LN+S+DFLSPFDA GHGSHVAS AAGNA V
Sbjct: 160 EEGPLFPKGCCNGKIVSARFFSAGAQAAAVLNSSIDFLSPFDAEGHGSHVASIAAGNAEV 219
Query: 251 PVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDE 310
PV+VDGFFYGLA+G+AP ARIAVYKA+YPTV TL DVI+AIDQA +DGVDIL LS+GP+E
Sbjct: 220 PVIVDGFFYGLATGIAPHARIAVYKAVYPTVATLTDVISAIDQAVIDGVDILALSVGPNE 279
Query: 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYP 370
P T L I+D+ +L A RAG+ VVQAAGN GPA +TVVSYSPWA+ AA TDR+Y
Sbjct: 280 PSDVGFTFLSIYDIAILSATRAGILVVQAAGNNGPARATVVSYSPWAIGVAASGTDRVYS 339
Query: 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAF 430
SLLLGNG K+GGVG+SGP+ G FL KLVLA+D + + P YIEECQ+PEAF
Sbjct: 340 TSLLLGNGQKVGGVGMSGPSLGSEFFLHKLVLAKDATKQNETNYNDIPSYIEECQHPEAF 399
Query: 431 EPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAV 490
+P++VQ S+V+C+FS GF N TS+L A+I+TA L FMGF+LIAN +YGDF+AEPIPF V
Sbjct: 400 DPNIVQNSIVLCSFSQGFLNGTSSLAAIIHTAKQLKFMGFVLIANPNYGDFIAEPIPFRV 459
Query: 491 PGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSR 550
PGIL+P VS +++IL+YYE+ T +DERG+ +F +AGIGEGR+ASF +AP VSRFSSR
Sbjct: 460 PGILVPSVSDTQVILKYYEENTCKDERGMVREFKGKAGIGEGRIASFGNQAPTVSRFSSR 519
Query: 551 GPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610
GPD+ +++R+ DVLKPD++APGHQIWAAWSP+SA +P+L G +FAL+SGTSMA PHI G
Sbjct: 520 GPDYININRSLADVLKPDILAPGHQIWAAWSPLSASEPLLKGYHFALMSGTSMAAPHIVG 579
Query: 611 IAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSA 670
IAALIKQ PSWTP+MIASA+S+TATKYD G LI AEGF + + Y ST FDFG+GLVS
Sbjct: 580 IAALIKQKYPSWTPSMIASAMSTTATKYDMNGDLIQAEGFNLHALYPSTPFDFGAGLVSP 639
Query: 671 TRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSL--SHPANLNLPSVTVS 728
+ ALDPGLV E+ED I+FLCSL DP +K+ATG CN S+ SHPA+LNLPS+T+S
Sbjct: 640 SNALDPGLVFPTEYEDNINFLCSLPGVDPAVVKSATGGQCNASISHSHPADLNLPSITIS 699
Query: 729 AVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQA 788
++ ++QR +KNVG K ETY+ SV+ PNGTTV++ PP FT+A + Q+L IQ T
Sbjct: 700 SLVGHQVVQRRVKNVGGKVETYVWSVIPPNGTTVNINPPVFTVAAEEVQNLEIQIIATHK 759
Query: 789 IGDFSFGEIVLTGSLNHIVRIPLSVKPVS 817
F+FGEI+LTGSLNHI RIPLS+ VS
Sbjct: 760 TDHFTFGEIILTGSLNHIARIPLSILVVS 788
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 819 | ||||||
| TAIR|locus:2027139 | 832 | ALE1 "AT1G62340" [Arabidopsis | 0.947 | 0.932 | 0.640 | 3.4e-267 | |
| TAIR|locus:2059052 | 815 | SLP3 "AT2G19170" [Arabidopsis | 0.952 | 0.957 | 0.426 | 2.9e-167 | |
| TAIR|locus:2126485 | 816 | AT4G30020 "AT4G30020" [Arabido | 0.952 | 0.955 | 0.423 | 9e-164 | |
| UNIPROTKB|Q5Z852 | 820 | P0468G03.18 "Putative meiotic | 0.940 | 0.939 | 0.424 | 1.5e-161 | |
| TAIR|locus:2163446 | 840 | AT5G44530 "AT5G44530" [Arabido | 0.913 | 0.890 | 0.439 | 7.2e-155 | |
| UNIPROTKB|Q0JBB7 | 815 | Os04g0543700 "Os04g0543700 pro | 0.941 | 0.946 | 0.405 | 1.2e-152 | |
| TAIR|locus:2128595 | 856 | AT4G20430 "AT4G20430" [Arabido | 0.910 | 0.871 | 0.411 | 9e-148 | |
| TAIR|locus:2204619 | 832 | AT1G30600 "AT1G30600" [Arabido | 0.942 | 0.927 | 0.403 | 1.1e-140 | |
| UNIPROTKB|Q94EF5 | 849 | P0665A11.6 "Uncharacterized pr | 0.905 | 0.873 | 0.413 | 4.4e-139 | |
| TAIR|locus:2131566 | 764 | SLP2 "AT4G34980" [Arabidopsis | 0.395 | 0.424 | 0.377 | 5.6e-85 |
| TAIR|locus:2027139 ALE1 "AT1G62340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2570 (909.7 bits), Expect = 3.4e-267, P = 3.4e-267
Identities = 507/792 (64%), Positives = 604/792 (76%)
Query: 34 IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIGSYNKLYSFK 93
IY +L+EGEPLAF S + +NS A + K++ + HD IL STLE GSY KLYSFK
Sbjct: 48 IYSILVEGEPLAFRASTN-----INSKAMALEAKKIEEIHDEILGSTLEKGSYTKLYSFK 102
Query: 94 YTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQGVWTQ--RGGDK 151
+ +N AV T +QAKKL VK VE D+ KLMT+YTP FL LPQ VW + GD+
Sbjct: 103 HVINAIAVRTTASQAKKLGKTKGVKAVEEDKGVKLMTTYTPDFLELPQQVWQKISNEGDR 162
Query: 152 NAGEGIVIGFVDTGINPSHPSFANY---NPFEPNIS--HFSGDCETGPRFPLSSCNGKIV 206
AGE IVIGFVDTGINP+HPSFA NP+ N+S HFSGDCE GP FP SCNGKI+
Sbjct: 163 RAGEDIVIGFVDTGINPTHPSFAALDLTNPYSSNLSRLHFSGDCEIGPFFPPGSCNGKII 222
Query: 207 SARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMA 266
SARFFSAGA+A LN+S+D LSPFDA GHGSHVAS AAGNAGVPV+VDGFFYG ASGMA
Sbjct: 223 SARFFSAGARASGALNSSLDILSPFDASGHGSHVASIAAGNAGVPVIVDGFFYGRASGMA 282
Query: 267 PCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLM 326
P +RIAVYKA+YP++GTL DVIAAIDQA MDGVD+LTLS+GPDEPP D T+LGIFD+ M
Sbjct: 283 PRSRIAVYKAIYPSIGTLVDVIAAIDQAIMDGVDVLTLSVGPDEPPVDKPTVLGIFDLAM 342
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPXXXXXXXXXXXXXXXX 386
L AR+AGVFVVQA GN GP+PS+V+SYSPW V AA TDR YP
Sbjct: 343 LLARKAGVFVVQAVGNNGPSPSSVLSYSPWVVGVAAGNTDRSYPAPLILDGGQTVQGVGL 402
Query: 387 XXPTCGRPLFLSKLVLARDVILRVNGTF--PRTPQYIEECQYPEAFEPSLVQGSVVICTF 444
PT G PL +LVLA+D + R NG+ P T IEECQ PE F+P+ V GS+VICTF
Sbjct: 403 SGPTLGAPLVQHRLVLAKDAV-RTNGSVLQPLTRD-IEECQRPENFDPAAVFGSIVICTF 460
Query: 445 SDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEII 504
SDGFYNQ ST+ A+ TA TLGFMGFILIAN +GD+VAEP+ F+ PGILIP VS ++II
Sbjct: 461 SDGFYNQMSTVLAITQTARTLGFMGFILIANPRFGDYVAEPVIFSAPGILIPTVSAAQII 520
Query: 505 LQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDV 564
L+YYE++T RD RGVA +F A+A IGEGR + F G+AP+VSRFSSRGP F D +R+P DV
Sbjct: 521 LRYYEEKTFRDTRGVATQFGARARIGEGRNSVFAGKAPVVSRFSSRGPAFIDATRSPLDV 580
Query: 565 LKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTP 624
LKPD++APGHQIW AWS SA DP+LTG +FA+LSGTSMATPHIAGI ALIKQ NPSWTP
Sbjct: 581 LKPDILAPGHQIWGAWSLPSAFDPILTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTP 640
Query: 625 TMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEF 684
MIASAIS+TA +YD+ G++I AE +E++ + S HFD G+G V+ RALDPGLVL F
Sbjct: 641 AMIASAISTTANEYDSNGEIISAEYYELSRLFPSNHFDHGAGHVNPARALDPGLVLPAGF 700
Query: 685 EDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSAVAKSLILQRSLKNVG 744
EDYISFLCSL + P +I+ ATG+ C +LSHPANLN PSVT+SA+ +SL+++RS ++V
Sbjct: 701 EDYISFLCSLPNISPATIRDATGVLCTTTLSHPANLNHPSVTISALKESLVVRRSFQDVS 760
Query: 745 NKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLN 804
NKTETYL SV+ PNGTTV L P WFT+ PQ TQDL I+FNVTQ + F+FGE+VLTGSLN
Sbjct: 761 NKTETYLGSVLPPNGTTVRLTPTWFTVPPQKTQDLDIEFNVTQVLNKFTFGEVVLTGSLN 820
Query: 805 HIVRIPLSVKPV 816
HI+RIPLSVK +
Sbjct: 821 HIIRIPLSVKTI 832
|
|
| TAIR|locus:2059052 SLP3 "AT2G19170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1627 (577.8 bits), Expect = 2.9e-167, P = 2.9e-167
Identities = 344/806 (42%), Positives = 474/806 (58%)
Query: 24 FIGCFAEERDIYLVLIEGEPL-AFHGSDD---------KRRFDLNSDAYKGQTKRLMDSH 73
F+ A ++Y+V +EG+P+ ++ G ++ + D +S+ + L H
Sbjct: 11 FVLLVAVTAEVYIVTMEGDPIISYKGGENGFEATAVESDEKIDTSSELVTVYARHLERKH 70
Query: 74 DRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYT 133
D IL E GSY KLYS+K+ +NGFA H++P QA+ L AP V+ V++D + + +T++T
Sbjct: 71 DMILGMLFEEGSYKKLYSYKHLINGFAAHVSPEQAETLRRAPGVRSVDKDWKVRRLTTHT 130
Query: 134 PQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYN--PFEPNISHFSGDCE 191
P+FLGLP VW GG AGE IVIGFVD+GI P HPSFA+++ P+ P + H+ G CE
Sbjct: 131 PEFLGLPTDVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFASHHRLPYGP-LPHYKGKCE 189
Query: 192 TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVP 251
P S CN KIV A+ F+ A+A N +D+ SP D GHGSH A+ AAGN G+P
Sbjct: 190 EDPHTKKSFCNRKIVGAQHFAEAAKAAGAFNPDIDYASPMDGDGHGSHTAAIAAGNNGIP 249
Query: 252 VVVDGFFYGLASGMAPCARIAVYKAMYPTVGT-LADVIAAIDQATMDGVDILTLSIGPDE 310
+ + G+ +G ASGMAP ARIAVYKA+Y G +ADV+AAIDQA DGVDIL+LS+GP+
Sbjct: 250 LRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNS 309
Query: 311 PPRDT-ITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIY 369
PP T T L FD +L A +AGVFV QAAGN GP P T+VSYSPW AA DR Y
Sbjct: 310 PPTTTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRY 369
Query: 370 PXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEA 429
PT RP L LV A DV+L + P +CQ PE
Sbjct: 370 KNHLTLGNGKMLAGMGLSPPT--RPHRLYTLVSANDVLLD-SSVSKYNPS---DCQRPEV 423
Query: 430 FEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFA 489
F LV+G++++C +S F T+++ V+ TA LG GF+L+ + +P+P A
Sbjct: 424 FNKKLVEGNILLCGYSFNFVVGTASIKKVVATAKHLGAAGFVLVVENVSPGTKFDPVPSA 483
Query: 490 VPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSS 549
+PGILI VS S ++ YY T RD G F A+ IG+G AP V+ FS+
Sbjct: 484 IPGILITDVSKSMDLIDYYNASTSRDWTGRVKSFKAEGSIGDGLAPVLHKSAPQVALFSA 543
Query: 550 RGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIA 609
RGP+ D S D+LKPD++APG+ IWAAW P +P G FAL+SGTSMA PHIA
Sbjct: 544 RGPNTKDFSFQDADLLKPDILAPGYLIWAAWCPNGTDEPNYVGEGFALISGTSMAAPHIA 603
Query: 610 GIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF---EITSTYNSTHFDFGSG 666
GIAAL+KQ +P W+P I SA+ +T+T D G+L+ A+ + E + +T FD+GSG
Sbjct: 604 GIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRLLQAQQYSDTEAVTLVKATPFDYGSG 663
Query: 667 LVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVT 726
V+ + ALDPGL+ +EDY+ FLC+ I+ T CN+ + HP+N N PS+
Sbjct: 664 HVNPSAALDPGLIFDAGYEDYLGFLCTTPGISAHEIRNYTNTACNYDMKHPSNFNAPSIA 723
Query: 727 VSAVAKSLILQRSLKNVGNKTETY-LTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNV 785
VS + + + R + NV ETY +T+ + P+ + + PP T+ P T+ ++ V
Sbjct: 724 VSHLVGTQTVTRKVTNVAEVEETYTITARMQPS-IAIEVNPPAMTLRPGATRTFSVTMTV 782
Query: 786 TQAIGDFSFGEIVLTGSLNHIVRIPL 811
G +SFGE+ L GS H VRIP+
Sbjct: 783 RSVSGVYSFGEVKLKGSRGHKVRIPV 808
|
|
| TAIR|locus:2126485 AT4G30020 "AT4G30020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
Identities = 342/808 (42%), Positives = 467/808 (57%)
Query: 24 FIGCFAE-ERDIYLVLIEGEPL-AFHGSDD---------KRRFDLNSDAYKGQTKRLMDS 72
F CF +IY+V +EGEP+ ++ G D+ + D S+ + L
Sbjct: 10 FFTCFLTVTAEIYIVTMEGEPIISYKGGDNGFEATAVESDEKIDTTSELVTSYARHLERK 69
Query: 73 HDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSY 132
HD +L GSY KLYS+K+ +NGFA H++P QA+ L AP VK V+RD + + +T++
Sbjct: 70 HDMLLGMLFVEGSYKKLYSYKHLINGFAAHVSPDQAEMLRRAPGVKSVDRDWKVRKLTTH 129
Query: 133 TPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYN---PFEPNISHFSGD 189
TPQFLGLP VW GG AGE IVIGF+D+GI P HPSFA+++ P+ P+ S + G
Sbjct: 130 TPQFLGLPTDVWPTGGGYDRAGEDIVIGFIDSGIFPHHPSFASHHTTVPYGPHPS-YKGK 188
Query: 190 CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAG 249
CE P +S CNGKI+ A+ F+ A+A N +DF SP D GHGSH A+ AAGN G
Sbjct: 189 CEEDPHTKISFCNGKIIGAQHFAEAAKAAGAFNPDIDFASPMDGDGHGSHTAAIAAGNNG 248
Query: 250 VPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGT-LADVIAAIDQATMDGVDILTLSIGP 308
+PV + G+ +G ASGMAP ARIAVYKA+Y G +ADV+AAIDQA DGVDIL+LS+GP
Sbjct: 249 IPVRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 308
Query: 309 DEPPRDT-ITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDR 367
+ PP T T L FD +L A +AGVFV QAAGN GP P T+VSYSPW AA DR
Sbjct: 309 NSPPATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDR 368
Query: 368 IYPXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYP 427
Y T RP K+V A DV+L +G P +CQ P
Sbjct: 369 RYKNHLTLGNGKMLAGIGLSPST--RPHRSYKMVSANDVLLGSSG-MKYNPS---DCQKP 422
Query: 428 EAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIP 487
E LV+G++++C +S F ++++ V TA LG GF+L+ + +P+P
Sbjct: 423 EVLNKKLVEGNILLCGYSFNFVAGSASIKKVAETAKHLGAAGFVLVVENVSPGTKFDPVP 482
Query: 488 FAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547
+PGILI VS S ++ YY T RD G F A+ IG+G AP V+ F
Sbjct: 483 SCIPGILITDVSKSMDLIDYYNVTTSRDWMGRVKDFKAEGSIGDGLEPILHKSAPEVALF 542
Query: 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPH 607
S+RGP+ D S D+LKPD++APG IW+AWS + G FAL+SGTSMA PH
Sbjct: 543 SARGPNTKDFSFQDADLLKPDILAPGSLIWSAWSANGTDEANYIGEGFALISGTSMAAPH 602
Query: 608 IAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYN---STHFDFG 664
IAGIAAL+KQ +P W+P I SA+ +T+T D G+ + A+ + T T +T FD+G
Sbjct: 603 IAGIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRPLQAQQYSETETVTLVKATPFDYG 662
Query: 665 SGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPS 724
SG V+ + ALDPGL+ +EDYI FLC+ D IK T CN + HP+N N PS
Sbjct: 663 SGHVNPSAALDPGLIFDAGYEDYIGFLCTTPGIDAHEIKNFTNTPCNFKMVHPSNFNTPS 722
Query: 725 VTVSAVAKSLILQRSLKNVGNKTETY-LTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQF 783
+ +S + ++ + R + NV + ETY +TS + P + + PP T+ ++ ++
Sbjct: 723 IAISHLVRTQTVTRRVTNVAEEEETYTITSRMEP-AIAIEVSPPAMTVRAGASRTFSVTL 781
Query: 784 NVTQAIGDFSFGEIVLTGSLNHIVRIPL 811
V G +SFG++ L GS H V +P+
Sbjct: 782 TVRSVTGAYSFGQVTLKGSRGHKVTLPV 809
|
|
| UNIPROTKB|Q5Z852 P0468G03.18 "Putative meiotic serine proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1573 (558.8 bits), Expect = 1.5e-161, P = 1.5e-161
Identities = 340/801 (42%), Positives = 468/801 (58%)
Query: 33 DIYLVLIEGEPL-AFHGS---------DDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLE 82
D+Y+V +EGEP+ ++ G D ++ S+A + L HD++L S L
Sbjct: 23 DVYIVTMEGEPVVSYRGGVEGFPATAIDLDEDMEITSEAVTSYSLHLRRYHDKLLDSLLV 82
Query: 83 IGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQG 142
G+Y KLYS+ + +NGFAVH++P QA+ L AP VK VERD + + +T++TPQFLGLP G
Sbjct: 83 EGTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHVERDMKIQKLTTHTPQFLGLPTG 142
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANY--NPFEPNISHFSGDCETGPRFPLSS 200
VW GG AGE +VIGFVD+GI P HPSF+ + +P+ P + H+ G CE P S
Sbjct: 143 VWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDPYGP-VPHYKGKCEMDPVTRRSF 201
Query: 201 CNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYG 260
CNGKIV A+ F+ A A N VDF SP D GHGSH A+ AAGN G+PV + G +G
Sbjct: 202 CNGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFG 261
Query: 261 LASGMAPCARIAVYKAMYPTVGT-LADVIAAIDQATMDGVDILTLSIGPDEPPRDT-ITM 318
ASGMAP ARIAVYK +Y G ++DV+AAIDQA DGVDIL LS+GP+ PP T T
Sbjct: 262 KASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDGVDILNLSVGPNSPPTATRTTF 321
Query: 319 LGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPXXXXXXXX 378
L FD +L A +AGVFV QAAGN GP P T+VS+SPW AA DR Y
Sbjct: 322 LNPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWITTVAAGVDDRRYKNHLVLGNG 381
Query: 379 XXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIE-ECQYPEAFEPSLVQG 437
T F L+ A D +L + T +Y +CQ PE +QG
Sbjct: 382 KLLPGLGVSPATHENKSF--SLISAADALLGSSAT-----KYSALDCQRPELLNKRKIQG 434
Query: 438 SVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPK 497
+++C +S + + T+++ V TA +LG GFI+ + Y +P+P ++PGILI
Sbjct: 435 KILLCGYSFNYISGTASIKKVSETARSLGAAGFIVAVENSYPGTKFDPVPVSMPGILITD 494
Query: 498 VSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDL 557
VS ++ ++ YY T RD G A F A A I +G + AP V+ FSSRGPD D
Sbjct: 495 VSRTKDLIDYYNSSTIRDWAGRATTFQATAAIADGLAPTLYNSAPQVALFSSRGPDVKDF 554
Query: 558 SRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ 617
S DVLKPD++APG+ IWAAW+P + G FA++SGTSMA PHIAGIAALIKQ
Sbjct: 555 SFQDADVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSMAAPHIAGIAALIKQ 614
Query: 618 HNPSWTPTMIASAISSTATKYDNYGQLIMAEGF---EITSTYNSTHFDFGSGLVSATRAL 674
NP W+P+ I SA+ +T+ D + A+ + EI + +T FD+GSG V+ AL
Sbjct: 615 KNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTLTRATPFDYGSGAVNPKAAL 674
Query: 675 DPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLS---HPANLNLPSVTVSAVA 731
DPGLVL +DYI+FLCS+ D + + TG C+ S P +LN+PS+T+S +
Sbjct: 675 DPGLVLDATHQDYITFLCSIPDVEHSEVSNITGSTCSSSSKVQQRPYDLNIPSITISQLR 734
Query: 732 KSLILQRSLKNVGNKTETY-LTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIG 790
+ ++R++ +V + ETY + + + P + + PP T+ P ++++ G
Sbjct: 735 GTQTVKRTVTSVAAEAETYTIMTRMSPE-IALEVSPPALTVLPGASREITATLTARSVTG 793
Query: 791 DFSFGEIVLTGSLNHIVRIPL 811
+SFGEI + G H+VRIP+
Sbjct: 794 TYSFGEITMKGDRGHLVRIPV 814
|
|
| TAIR|locus:2163446 AT5G44530 "AT5G44530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 338/769 (43%), Positives = 446/769 (57%)
Query: 58 NSDAYKGQTK--RLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAP 115
NS G++K ++ SHD L+ TL+ Y KLYS+ Y +NGFA+ + QA+KL
Sbjct: 73 NSRKRHGKSKIPSVVQSHDSFLRKTLKGEKYIKLYSYHYLINGFALFINSQQAEKLSMRK 132
Query: 116 QVKLVERDRRAKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFAN 175
+V + D + T+YTPQF+GLPQG W + GG + AGEG++IGF+DTGI+P+HPSF N
Sbjct: 133 EVANIVLDYSVRTATTYTPQFMGLPQGAWVKEGGFEIAGEGVIIGFIDTGIDPNHPSF-N 191
Query: 176 YNPFE---PNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFD 232
N + P HFSG CE P FP SCN K++ AR F+ A N+S D+ SPFD
Sbjct: 192 DNDSKRSYPIPKHFSGVCEVTPDFPSGSCNKKLIGARHFAQSAVTRGIFNSSEDYASPFD 251
Query: 233 AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLA-DVIAAI 291
GHG+H AS AAGN GVPV+V +G ASG+AP A I+VYKA+Y + G A DV+AAI
Sbjct: 252 GDGHGTHTASVAAGNHGVPVIVSNHNFGYASGIAPRAFISVYKALYKSFGGFAADVVAAI 311
Query: 292 DQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVV 351
DQA DGVDIL+LSI P+ P T D+ +L A +AG+FVVQAAGN GPAP T+
Sbjct: 312 DQAAQDGVDILSLSITPNRKPPGVATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKTMS 371
Query: 352 SYSPWAVAAAACTTDRIYPXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVN 411
S+SPW A + DR+Y PT ++ K++ A + N
Sbjct: 372 SFSPWIFTVGASSHDRVYSNSLTLGNNVTIPGMGFAIPTDSGKMY--KMISAFHALN--N 427
Query: 412 GTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFI 471
T Y+ ECQ E F+ V G ++IC++S F ST+ ++ A L G I
Sbjct: 428 STSVDKDMYVGECQDYENFDQDRVSGKLLICSYSARFVLGLSTIKQALDVAKNLSATGVI 487
Query: 472 LIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAI-KFNAQAGIG 530
+ + F P P +PGI+IP V S+ +L+YY RD I F A A I
Sbjct: 488 FYIDPYVLGFEINPTPMDMPGIIIPSVEDSKTLLKYYNSSIQRDVTTKEIVSFGAVAAIE 547
Query: 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPML 590
G A+F RAP V +S+RGPD D S N DVLKP+++APG+ IW AWS S
Sbjct: 548 GGLNANFSNRAPKVMYYSARGPDPEDNSFNDADVLKPNLVAPGNSIWGAWSSASTDSTEF 607
Query: 591 TGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
G FA++SGTSMA PH+AG+AALIKQ P +TP+ I+SA+S+TA DN G IMA+
Sbjct: 608 EGEKFAMMSGTSMAAPHVAGVAALIKQSYPQFTPSTISSALSTTALLNDNKGSPIMAQRT 667
Query: 651 EIT---STYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATG 707
S Y +T D GSG V+AT ALDPGLV FEDYISFLC + SD V TG
Sbjct: 668 YSNPDQSLYTATPSDMGSGFVNATAALDPGLVFDTSFEDYISFLCGINGSDTVVFNY-TG 726
Query: 708 IWC--NHSLSHPANLNLPSVTVSAVAKSLILQRSLKNV-GNKTETYLTSVVHPNGTTVSL 764
C N++ +LNLPS+TVS ++ + QRS++N+ GN ETY P G ++ +
Sbjct: 727 FRCPANNTPVSGFDLNLPSITVSTLSGTQTFQRSMRNIAGN--ETYNVGWSPPYGVSMKV 784
Query: 765 YPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
P F+IA Q L++ VT+ SFG I L G+ HIV IP++V
Sbjct: 785 SPTQFSIAMGENQVLSVTLTVTKNSSSSSFGRIGLFGNTGHIVNIPVTV 833
|
|
| UNIPROTKB|Q0JBB7 Os04g0543700 "Os04g0543700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1489 (529.2 bits), Expect = 1.2e-152, P = 1.2e-152
Identities = 320/790 (40%), Positives = 455/790 (57%)
Query: 34 IYLVLIEGEPLAFHGSDDKRRF-DLNSDAYKGQTKRLMDSHDRILQSTLEIGSYNKLYSF 92
+++V++E +P+ S K+ + YK T HD L S L GSY KLYS+
Sbjct: 35 VFMVVMEDDPIISPKSSQKKVMRGEEAQKYKAMTTT---KHDIFLDSFLPAGSYKKLYSY 91
Query: 93 KYTVNGFAVHLTPTQA-KKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQGVWTQRGGDK 151
+ +NGFA++ +A K L A V+L++ D + MT+YTP+++G VW GG +
Sbjct: 92 THLLNGFAIYAKSEKAIKTLSGAKGVRLIQEDIKMAKMTTYTPRYIGA-NVVWPLLGGAE 150
Query: 152 NAGEGIVIGFVDTGINPSHPSF-ANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARF 210
AG+G+VIG VDTGI+PS+PSF + + +P + F G C+TG RFP SCNGKIV AR+
Sbjct: 151 KAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPPPASFKGTCQTGERFPPDSCNGKIVGARW 210
Query: 211 FSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR 270
F+ QA N ++ + SP+D GHGSH ASTAAGN P + G+ +G ASG+AP A
Sbjct: 211 FARAGQATGEFNATMHYASPYDPDGHGSHTASTAAGNFHTPAISKGYNFGHASGVAPGAH 270
Query: 271 IAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFAR 330
+A+YKA Y G ++DVIAA+D+A DGVDI++LS+GP + L + + +L A
Sbjct: 271 LAIYKAAYSFGGYMSDVIAAVDKAVEDGVDIISLSLGPTTITSGPASFLNLLETQLLLAT 330
Query: 331 RAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPXXXXXXXXXXXXXXXXXXPT 390
+AG+ VVQA GN GP ++VVS+SPW + A TTDR Y T
Sbjct: 331 KAGISVVQAVGNGGPDANSVVSFSPWITSVGASTTDRKYNKSIIIGNGQVFSCGGLSPST 390
Query: 391 CGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450
G ++ L LA DV N T + CQ P+ F SLVQG V+IC F Y
Sbjct: 391 PGETMY--PLALADDVC-NTNSTGGSS-----NCQDPDVFIRSLVQGKVIICMFVSSNYY 442
Query: 451 QTSTLTAVINTAITLGFMGFILI-ANSHYGDFVAEP-IPFAVPGILIPKVSTSEIILQYY 508
+ L +++T +G G I+ +S D P P ++P ++ + ++ +L+YY
Sbjct: 443 EGDFLAGIVDTIQKIGAAGVIITDRSSSDSDIEYHPTFPTSIPSAIVVNSADAQALLEYY 502
Query: 509 EQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPD 568
+ RD+ G KF A I +GR A + AP+V+ +SSRGPD D+ DVLKP+
Sbjct: 503 DDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPVVAEYSSRGPDVDDMQMQAADVLKPN 562
Query: 569 VIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIA 628
V+APGH IW AWSP S G ++A+LSGTSMATPH+AG+ ALI+Q +P W+P M+
Sbjct: 563 VMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMATPHVAGVVALIRQRHPKWSPAMVM 622
Query: 629 SAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYI 688
SAI +TA D G+ +MA + +T FD G+G ++A RA+DPGLV + DY+
Sbjct: 623 SAIMTTADVTDRSGRPLMARR-DGGVLERATPFDMGAGAINAARAVDPGLVFDAGYRDYL 681
Query: 689 SFLCSLADSDPVSIKAATGIWCNHSLSH-PANLNLPSVTVSAVAKSLILQRSLKNVGNKT 747
FLC++ D ++ A G+ C S + ++LN PSVTV+++ S + R + +VG +
Sbjct: 682 QFLCAVPGVDDAAVLRAVGVPCPPSRARWCSDLNAPSVTVASLVGSRRVDRRVTSVGAEN 741
Query: 748 ETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIV 807
ETY+ V P+G V + P F +AP T L I N T FSFGE+VL G H V
Sbjct: 742 ETYMAHVQAPDGVAVRVSPDTFAVAPGATATLRIVLNTTAPGNTFSFGEVVLRGDKKHTV 801
Query: 808 RIPLSVKPVS 817
RIPL+V P +
Sbjct: 802 RIPLAVFPAA 811
|
|
| TAIR|locus:2128595 AT4G20430 "AT4G20430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
Identities = 314/763 (41%), Positives = 446/763 (58%)
Query: 62 YKGQTKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
++ + + +HD +L++ L+ Y KLYSF Y +NGFAV ++ QA+ L +V +
Sbjct: 92 WRSRRSAIAQAHDSLLRNALKGEKYIKLYSFHYLINGFAVFVSSQQAETLSRRREVANIV 151
Query: 122 RDRRAKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFE- 180
D + T+YTPQF+GLP+G W + GG + AGEGIVIGF+DTGI+P+HPSF + +
Sbjct: 152 LDFSVRTATTYTPQFMGLPKGAWVKEGGYETAGEGIVIGFIDTGIDPTHPSFNGTDTSQR 211
Query: 181 --PNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGS 238
P +HFSG CE P FP SCN K+V AR F+ A N+S D+ SPFD GHG+
Sbjct: 212 QYPIPNHFSGVCEVTPDFPSGSCNRKLVGARHFAQSAITRGIFNSSEDYASPFDGDGHGT 271
Query: 239 HVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLA-DVIAAIDQATMD 297
H AS AAGN GV VV G +G ASG+AP A I+VYKA+Y + G A DV+AAIDQA D
Sbjct: 272 HTASIAAGNHGVSAVVSGHNFGSASGIAPRAHISVYKALYKSFGGFAADVVAAIDQAAQD 331
Query: 298 GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWA 357
GVDIL+LSI P+ P T D+ ML A +AG+FVVQAAGN GP+P ++ S+SPW
Sbjct: 332 GVDILSLSITPNRRPPGVATFFNPLDMAMLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWI 391
Query: 358 VAAAACTTDRIYPXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRT 417
A + DR Y T + ++ A D + + +
Sbjct: 392 FTVGAASHDRDYSNSIVLGNNVSIPGVGLALRTDEGKKYT--MISALDALKNKSSVVDKD 449
Query: 418 PQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477
Y+ ECQ +F+ +++G+++IC++S F ST+ + A L G + + +
Sbjct: 450 -MYVGECQDYGSFDKDVIRGNLLICSYSIRFVLGLSTIKQALAVAKNLSAKGVVFYMDPY 508
Query: 478 YGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAI-KFNAQAGIGEGRVAS 536
F P P +PGI+IP S+++L+YY RD I +F A A I G+ A+
Sbjct: 509 VLGFQINPTPMDMPGIIIPSAEDSKVLLKYYNSSLVRDGTTKEIVRFGAVAAIAGGQNAN 568
Query: 537 FEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFA 596
F RAP + +S+RGPD D N D+LKP+++APG+ IW AWS + G +FA
Sbjct: 569 FSNRAPKIMYYSARGPDPQDSLFNDADILKPNLVAPGNSIWGAWSSAATESTEFEGESFA 628
Query: 597 LLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEIT--S 654
++SGTSMA PH+AG+AAL+KQ ++P+ IASA+S+T+ +DN G+ IMA+
Sbjct: 629 MMSGTSMAAPHVAGVAALVKQKFRKFSPSAIASALSTTSVLFDNKGEAIMAQRAYANPDQ 688
Query: 655 TYN-STHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWC--N 711
T + +T FD G+G V+AT ALDPGL+ FEDY+SFLC + S PV TG C N
Sbjct: 689 TISPATPFDMGNGFVNATAALDPGLIFDTSFEDYMSFLCGINGSAPVVFNY-TGTNCLRN 747
Query: 712 HSLSHPANLNLPSVTVSAVAKSLILQRSLKNV-GNKTETYLTSVVHPNGTTVSLYPPWFT 770
++ ++LNLPS+TVS + + +QR + N+ GN ETY S++ P +++ P F+
Sbjct: 748 NATISGSDLNLPSITVSKLNNTRTVQRLMTNIAGN--ETYTVSLITPFDVLINVSPTQFS 805
Query: 771 IAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
IA T+ L++ + SFG I L G+ HIVRIP+SV
Sbjct: 806 IASGETKLLSVILTAKRNSSISSFGGIKLLGNAGHIVRIPVSV 848
|
|
| TAIR|locus:2204619 AT1G30600 "AT1G30600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 322/799 (40%), Positives = 452/799 (56%)
Query: 34 IYLVLIEGEP-LAFHG---SDDKRRFDL-NSDAYK--GQTKRLMDSHDRILQSTLEIGSY 86
+Y+V ++ P + F G SD K +S Y+ ++ ++ HD +L++ L +Y
Sbjct: 36 VYIVTLKDRPSVHFSGRESSDSKHSLTATSSQIYRTLNRSASIIRVHDSLLRNVLRKENY 95
Query: 87 NKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQGVWTQ 146
KLYS+ Y +NGF+ LT QA +L +V+ V D + T++TPQFLGLP+G W +
Sbjct: 96 LKLYSYHYLINGFSAVLTRKQADRLAAREEVENVVLDFLVEKATTHTPQFLGLPRGAWLR 155
Query: 147 RGGDKNAGEGIVIGFVDTGINPSHPSFAN-YNPFEPNIS-HFSGDCETGPRFPLSSCNGK 204
GG + AGEG+VIGF+DTGI+P+HPSF++ + ++ HF+G CE FP SCN K
Sbjct: 156 DGGSEYAGEGVVIGFIDTGIDPTHPSFSDKISGHTYSVPPHFTGVCEVTIGFPPGSCNRK 215
Query: 205 IVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASG 264
++ AR F+ A + LN+S D SPFD GHG+H AS AAGN G+PVVV G G ASG
Sbjct: 216 LIGARHFAESALSRGVLNSSQDDASPFDGEGHGTHTASVAAGNHGIPVVVAGHRLGNASG 275
Query: 265 MAPCARIAVYKAMYPTVGTLA-DVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFD 323
MAP A IA+YKA+Y G A D+IAAIDQA DGVDI+ LSI P+ P T D
Sbjct: 276 MAPRAHIAIYKALYKRFGGFAADIIAAIDQAAQDGVDIINLSITPNRRPPGIATFFNPID 335
Query: 324 VLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPXXXXXXXXXXXXX 383
+ +L A +AG+FVVQAAGN GPAP ++ S+SPW A + DR+Y
Sbjct: 336 MALLSAVKAGIFVVQAAGNTGPAPKSMSSFSPWIFTVGATSHDRVYSNSIILGNNVTIPG 395
Query: 384 XXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICT 443
T + KLVLA LR NGT Y+ ECQ +F+ LVQG +++C+
Sbjct: 396 VGLASGT----RIMHKLVLATHA-LR-NGTTVMDAIYVGECQDSSSFDQKLVQGKILVCS 449
Query: 444 FSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEI 503
++ F ST+ + TA L G + + F P +PGILI S+
Sbjct: 450 YTVRFILGVSTIKQALLTAKNLTAAGLVFYIDPSATGFQMTSSPMDIPGILISSPQDSQA 509
Query: 504 ILQYYEQQTHRDERGVAIKFNAQ-AGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPT 562
+L+YY R+ I +A A I G ++ AP V FS+RGPD D S
Sbjct: 510 LLRYYNSSLLRENGSGKIVGSASVAKIVGGMRPTYGITAPKVMYFSARGPDPEDDSFVDA 569
Query: 563 DVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSW 622
D++KP+++APG+ IW AWSP+ G FA+ SGTSM+ PH+ GIAALIKQ P +
Sbjct: 570 DIMKPNLVAPGNAIWGAWSPLGIGTNDFQGERFAMESGTSMSAPHVTGIAALIKQKFPHF 629
Query: 623 TPTMIASAISSTATKYDNYGQLIMAEGFEIT---STYNSTHFDFGSGLVSATRALDPGLV 679
TP IASA+S+TA+ D G+ IMA+ + S +T FD GSG V+AT ALDPGL+
Sbjct: 630 TPAAIASALSTTASLSDRKGEHIMAQRTVLNPDISQSPATPFDMGSGFVNATAALDPGLI 689
Query: 680 LSVEFEDYISFLCSLADSDPVSIKAATGIWC---NHSLSHPANLNLPSVTVSAVAKSLIL 736
+ + +Y+ FLC + S PV + TG C N SL+ ++LNLPSVT++ + + +
Sbjct: 690 FDIGYNEYMKFLCGINGSSPVVLNY-TGESCSSYNSSLA-ASDLNLPSVTIAKLVGTRAV 747
Query: 737 QRSLKNVGNKT--ETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSF 794
R + N+ ETY+ + P+ +V + P FTI T+ L++ F + + SF
Sbjct: 748 LRWVTNIATTATNETYIVGWMAPDSVSVKVSPAKFTIGNGQTRVLSLVFRAMKNVSMASF 807
Query: 795 GEIVLTGSLNHIVRIPLSV 813
G I L G H+V IP++V
Sbjct: 808 GRIGLFGDRGHVVNIPVAV 826
|
|
| UNIPROTKB|Q94EF5 P0665A11.6 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 314/760 (41%), Positives = 425/760 (55%)
Query: 62 YKGQTKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVE 121
Y RL +S +L+ TL Y KLYS++Y +NGFAV +TP QA++L +V V
Sbjct: 92 YGSYLVRLQNS---LLKRTLRGERYIKLYSYRYLINGFAVVITPQQAERLSMTKEVANVM 148
Query: 122 RDRRAKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFAN--YNPF 179
D + T++TP+FLGLPQG W Q GG + AG+G+V+G +DTGI+P+HPSFA+
Sbjct: 149 LDFSVRTATTHTPEFLGLPQGAWVQEGGPQCAGQGVVVGLIDTGIDPTHPSFADDLITDS 208
Query: 180 EPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSH 239
P +H+SG CE FP SCN K+V AR F+A A N S D SP D+ GHG+H
Sbjct: 209 YPVPAHYSGICEVTNDFPSGSCNRKLVGARHFAASAITRGVFNASQDHASPSDSDGHGTH 268
Query: 240 VASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLA-DVIAAIDQATMDG 298
AS AAGN G+PVVV G +G ASGMAP A IAVYKA+Y + G A DV+AAIDQA D
Sbjct: 269 TASIAAGNHGIPVVVAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAIDQAAEDN 328
Query: 299 VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAV 358
VDI++LSI P+ P T D+ +L A +AG+FVVQAAGN GP+P ++ SYSPW
Sbjct: 329 VDIISLSITPNRRPPGLATFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSYSPWIF 388
Query: 359 AAAACTTDRIYPXXXXXXXXXXXXXXXXXXPTCGRPLFLSKLVLARDVILRVNGTFPRTP 418
A DR Y T G +F LV A L+ N P T
Sbjct: 389 TVGASAHDREYNNYVVLGNNLTITGVGLAPGTDGDSMFT--LVAAPHA-LKNNVASP-TE 444
Query: 419 QYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY 478
+ ECQ + L++G +++C++S F S++ ++TA + G I +
Sbjct: 445 MSLGECQDSSHLDEDLIRGKILVCSYSIRFVLGLSSVKQALDTAKNVSAAGVIFYLDPFV 504
Query: 479 GDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAI-KFNAQAGIGEGRVASF 537
F P P +PG++IP S++ L YY + RDE I F A A I G+ ++
Sbjct: 505 IGFQLNPTPMDMPGLIIPSSDDSKVFLNYYNESLVRDETSNKIVSFGAIAKILGGQNPNY 564
Query: 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFAL 597
AP V +S+RGPD D S D+LKP++IAPG IW AWS + G +FA+
Sbjct: 565 GISAPKVMFYSARGPDPEDNSLANADILKPNLIAPGSSIWGAWSSLGLDSAEFAGESFAI 624
Query: 598 LSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAE---GFEITS 654
+SGTSMA PH+AG+AAL+KQ P ++P I SA+S+T + D G IMA+ G ++
Sbjct: 625 ISGTSMAAPHVAGLAALVKQKFPYFSPAAIGSALSTTTSLSDREGNPIMAQRTYGNPNST 684
Query: 655 TYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSL 714
+T FD G+G V+AT ALDPGL+ ++D+ SFLC + S PV + TG C+ S
Sbjct: 685 QSPATPFDMGNGFVNATAALDPGLIFDSSYDDFFSFLCGINGSAPV-VMNYTGNSCSSSA 743
Query: 715 SHPANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQ 774
A+LNLPS+T++ + +S + R++ NV + E Y S P G VS P F I P
Sbjct: 744 MTGADLNLPSITIAVLNQSRTITRTVTNVASD-ERYTVSYSAPYGVAVSASPAQFFI-PS 801
Query: 775 GT-QDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSV 813
G Q + N T SFG + G H V IP SV
Sbjct: 802 GQRQQVTFVVNATMNGTSASFGSVGFYGDKGHRVMIPFSV 841
|
|
| TAIR|locus:2131566 SLP2 "AT4G34980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 5.6e-85, Sum P(2) = 5.6e-85
Identities = 131/347 (37%), Positives = 190/347 (54%)
Query: 34 IYLVLIEGEP-LAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIGSYNKLYSF 92
I L+L P ++F S + F D G + +H ST E +++
Sbjct: 6 IVLLLFLSFPFISFAASQAAKTFIFRIDG--GSMPSIFPTHYH-WYST-EFAEESRIVHV 61
Query: 93 KYTV-NGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLP--QGVWTQRGG 149
+TV +GF+ +TP +A L N P V V DRR +L T+ +PQFLGL +G+W++
Sbjct: 62 YHTVFHGFSAVVTPDEADNLRNHPAVLAVFEDRRRELHTTRSPQFLGLQNQKGLWSE--- 118
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
+ G ++IG DTGI P SF++ N P + G CE+G RF +CN KI+ AR
Sbjct: 119 -SDYGSDVIIGVFDTGIWPERRSFSDLN-LGPIPKRWRGVCESGARFSPRNCNRKIIGAR 176
Query: 210 FFSAGAQA--VATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAP 267
FF+ G QA + +N +V+FLSP DA GHG+H +STAAG + G+ G+A G+AP
Sbjct: 177 FFAKGQQAAVIGGINKTVEFLSPRDADGHGTHTSSTAAGRHAFKASMSGYASGVAKGVAP 236
Query: 268 CARIAVYKAMYPTVGTL-ADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLM 326
ARIA YK + G L +D++AA D A DGVD++++SIG D IT D +
Sbjct: 237 KARIAAYKVCWKDSGCLDSDILAAFDAAVRDGVDVISISIGGG----DGITSPYYLDPIA 292
Query: 327 LFARRA---GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYP 370
+ + A G+FV +AGN+GP +V + +PW A T DR +P
Sbjct: 293 IGSYGAASKGIFVSSSAGNEGPNGMSVTNLAPWVTTVGASTIDRNFP 339
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 819 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-91 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-29 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 6e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 5e-21 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-18 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-18 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-16 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 4e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 6e-15 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 4e-13 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-12 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-12 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 5e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-12 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-11 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 2e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 3e-11 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-11 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 7e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-10 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 1e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 4e-10 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-10 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 7e-10 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 7e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 7e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 1e-08 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 3e-08 | |
| pfam06280 | 110 | pfam06280, DUF1034, Fn3-like domain (DUF1034) | 6e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 3e-06 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-06 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 8e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 8e-06 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 1e-05 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-05 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-05 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 3e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 1e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 3e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 3e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 4e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 5e-04 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 6e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 8e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 8e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 0.001 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 289 bits (743), Expect = 2e-91
Identities = 112/239 (46%), Positives = 140/239 (58%), Gaps = 6/239 (2%)
Query: 127 KLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHF 186
+L T+ +P FLGLP G NAGEGI+IG +DTGI P HPSFA+ P +
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG-GPYPHTW 60
Query: 187 SGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG 246
GDC TG F SCN K++ AR+FS G A N+ ++ SP D GHG+H ASTAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 247 NAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVG-TLADVIAAIDQATMDGVDILTLS 305
N V V GF +G ASG+AP ARIAVYK +P G +D++AAIDQA DGVD+++ S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 306 IGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT 364
IG P + L A AG+FV +AGN GP STV + +PW AA T
Sbjct: 181 IGGGSPD----PYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST 235
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 3e-29
Identities = 38/72 (52%), Positives = 50/72 (69%)
Query: 565 LKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTP 624
LKPD+ APG I AAW+P A G +FA +SGTSMA+PH+AG+AAL+K +P W+P
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSP 295
Query: 625 TMIASAISSTAT 636
I SA+ +TA
Sbjct: 296 AAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 6e-24
Identities = 67/225 (29%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G+G+ + +DTGI+ +HP GP FP N K+ F
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLG------------------GPGFP----NDKVKGGYDFVD 38
Query: 214 GAQAVATLNTSVDFLSPFDAV---GHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR 270
L A GHG+HVA AGN + G +AP A
Sbjct: 39 DDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVGTIKG--------VAPKAD 90
Query: 271 IAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFA 329
+ YK + P GT +IAAI+QA DG+D++ LS+G D + I + A
Sbjct: 91 LYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAINN-----A 145
Query: 330 RRAGVFVVQAAGNQGPAPSTV----VSYSPWAVAAAACTTDRIYP 370
+AGV VV AAGN GPAP T+ + S V A+
Sbjct: 146 VKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADVAEAD 190
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 26/134 (19%)
Query: 540 RAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599
A V SSRGP +KPD++APG I + +G +A +S
Sbjct: 188 EADTVGPSSSRGP------PTSDSAIKPDIVAPGVDIMSTAPG--------SGTGYARMS 233
Query: 600 GTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNST 659
GTSMA PH+AG AAL+KQ +P W+P I +A+ +TA + +
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYD------------SDGVVYP 281
Query: 660 HFDFGSGLVSATRA 673
G+G V A RA
Sbjct: 282 VSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 5e-21
Identities = 58/222 (26%), Positives = 83/222 (37%), Gaps = 58/222 (26%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G+GI + +DTGI+ HP F I A F
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDG---------------------------RIIRFADFV-- 31
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
NT +P+D GHG+HVA AG+ G G+AP A +
Sbjct: 32 --------NTVNGRTTPYDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVG 76
Query: 274 YKAMYPTV-GTLADVIAAID----QATMDGVDILTLSIG--PDEPPRDTITMLGIFDVLM 326
K + + G+ +D+IA ID + ++ LS+G PD + +
Sbjct: 77 VKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAV----E 132
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVS--YSPWAVAAAACTTD 366
AG+ VV AAGN GP P T+ S SP + A +
Sbjct: 133 R-LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDN 173
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 2e-18
Identities = 55/215 (25%), Positives = 79/215 (36%), Gaps = 52/215 (24%)
Query: 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216
+ + +DTG++P HP F G
Sbjct: 1 VTVAVIDTGVDPDHPDLDG----------------------------------LFGGGDG 26
Query: 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKA 276
+ P D GHG+HVA A +A V G+AP A++ K
Sbjct: 27 GNDDDDNENGPTDPDDGNGHGTHVAGIIAASANNGGGV---------GVAPGAKLIPVKV 77
Query: 277 MYPT-VGTLADVIAAIDQATMD-GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGV 334
+ G+ +D+ AAID A D G D++ LS+G P + + + + GV
Sbjct: 78 LDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSAL----SEAIDYALAKLGV 133
Query: 335 FVVQAAGNQGPAPSTVVSY---SPWAVAAAACTTD 366
VV AAGN GP T + Y SP +A A D
Sbjct: 134 LVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 54/159 (33%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 527 AGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL 586
+G G VAS + S FSS GP +L LKPDV APG I + +
Sbjct: 177 SGRGVIAVASVD------SYFSSWGPTN-ELY------LKPDVAAPGGNILSTY------ 217
Query: 587 DPMLTGCNFALLSGTSMATPHIAGIAALIKQ-HNPSWTPTMIASAISSTATKYDNYGQLI 645
L G +A+LSGTSMATP++AG AAL+ Q + +P + ++STA L
Sbjct: 218 --PLAGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAK------PLP 269
Query: 646 MAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEF 684
++G + G+GLV+A +AL LS
Sbjct: 270 WSDG-TSALPDLAPVAQQGAGLVNAYKALYATTTLSPSS 307
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 41/201 (20%), Positives = 67/201 (33%), Gaps = 45/201 (22%)
Query: 158 VIGFVDTGINPSHPSFA-NYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216
+G +DTGI+ +HP + Y + P NG
Sbjct: 1 TVGVLDTGIDVNHPDLSGRYIGLAYRNG-YDFVDNDPDPTPDDDNNG------------- 46
Query: 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKA 276
HG+HVA A G AP A++ K
Sbjct: 47 -------------------HGTHVAGIIAAGDNNGSGGVGV--------APNAKLESVKV 79
Query: 277 MYPTVGTLADVIAAIDQATM--DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGV 334
+ + GT +++ AI+ A + + ++ +S+GP + P + I ++ + A G
Sbjct: 80 LPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPPSS-WSSAIDELAVNGADNKGS 138
Query: 335 FVVQAAGNQGPAPSTVVSYSP 355
V AAGN G P
Sbjct: 139 LFVVAAGNGGDYADNNPVSDP 159
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 38/94 (40%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Query: 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTS 602
+S FSSRGP +KPDV+APG I + SP + G + +SGTS
Sbjct: 179 GISYFSSRGP-------TGDGRIKPDVVAPGENIVSCRSPGGNPGAGV-GSGYFEMSGTS 230
Query: 603 MATPHIAGIAALIKQHNPSWTPTMIASAISSTAT 636
MATPH++G AL+ Q NP TP + + TAT
Sbjct: 231 MATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 6e-15
Identities = 61/196 (31%), Positives = 80/196 (40%), Gaps = 47/196 (23%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G+G+ + VDTGI+ +HP+ G C GP K+ F
Sbjct: 12 GKGVKVAVVDTGIDYTHPAL--------------GGC-FGPGC-------KVAGGYDF-V 48
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
G T N V P D GHG+HVA A N GF +G+AP A +
Sbjct: 49 GDDYDGT-NPPVPDDDPMDCQGHGTHVAGIIAANPNAY----GF-----TGVAPEATLGA 98
Query: 274 YKAMYPTVGTLADVI-AAIDQATMDGVDILTLSIG-PDEPPRDTITMLGIFDVLMLFARR 331
Y+ + T D I AA +A DG D++T S+G P D ++ A R
Sbjct: 99 YRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSEDPWAVV---------ASR 149
Query: 332 ---AGVFVVQAAGNQG 344
AGV V AAGN G
Sbjct: 150 IVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 540 RAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599
+ V+ FSSRGP T R +KPD++APG I +A S + + + S
Sbjct: 197 NSDTVASFSSRGP--TYDGR-----IKPDLVAPGTGILSARSGGGGIGD-TSDSAYTSKS 248
Query: 600 GTSMATPHIAGIAALIKQH 618
GTSMATP +AG AAL++Q+
Sbjct: 249 GTSMATPLVAGAAALLRQY 267
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 35/131 (26%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCN--FALLSGTSMA 604
FS+ G P D +KPD++APG I ++ G + SGTSMA
Sbjct: 180 FSNYGG--------PVDGIKPDIVAPGGNILSSGP---------GGDLGGYDSHSGTSMA 222
Query: 605 TPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFG 664
P +AG AAL+ NPS TP + + + +TAT + G FG
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLD----------------RSFG 266
Query: 665 SGLVSATRALD 675
GL++ +A+
Sbjct: 267 YGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-13
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 32/127 (25%)
Query: 534 VASFEGR-----APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
VAS + +S FSS GP DL LKPD+ APG I++ +
Sbjct: 219 VASANKKVPNPNGGQMSGFSSWGPT-PDLD------LKPDITAPGGNIYST-VNDNTYGY 270
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQH----NPSWTPTMIASAI------SSTATKY 638
M SGTSMA+PH+AG +AL+KQ P + + + ++T
Sbjct: 271 M---------SGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLD 321
Query: 639 DNYGQLI 645
+
Sbjct: 322 SEDTKTY 328
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 23/88 (26%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606
FSS GP+ ++ APG I + + ++A LSGTSMATP
Sbjct: 165 FSSTGPE-------------VELAAPGVDILSTY----------PNNDYAYLSGTSMATP 201
Query: 607 HIAGIAALIKQHNPSWTPTMIASAISST 634
H+AG+AAL+ P T + A++ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 57/221 (25%), Positives = 84/221 (38%), Gaps = 55/221 (24%)
Query: 148 GGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVS 207
D G G+ + VDTG++P+HP K V
Sbjct: 21 AWDITGGSGVTVAVVDTGVDPTHPDLLK---------------------------VKFVL 53
Query: 208 ARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAP 267
F ++ D D GHG+HVA A +G G+A G+AP
Sbjct: 54 GYDF---------VDNDSD---AMDDNGHGTHVAGIIAAATN-----NG--TGVA-GVAP 93
Query: 268 CARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLM 326
A+I K + G+LAD+ I A G ++ LS+G + + +
Sbjct: 94 KAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTA------LQEAI- 146
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDR 367
+A GV VV AAGN+G + + + P A+A AA D
Sbjct: 147 NYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 17/82 (20%)
Query: 540 RAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599
R +++ FSSRGP + +KPD+ APG I +A G + S
Sbjct: 183 RNDVLADFSSRGP-------STYGRIKPDISAPGVNIRSAV----------PGGGYGSSS 225
Query: 600 GTSMATPHIAGIAALIKQHNPS 621
GTSMA PH+AG+AAL+ NPS
Sbjct: 226 GTSMAAPHVAGVAALLWSANPS 247
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 55/217 (25%), Positives = 74/217 (34%), Gaps = 56/217 (25%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G G+ +G +D+GI+ SHP FA G++ A ++ A
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFA----------------------------GRVSEASYYVA 33
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
A N D HG+HVA A DG G+AP A +
Sbjct: 34 VNDAGYASNGDGD--------SHGTHVAGVIAAAR------DGGG---MHGVAPDATLYS 76
Query: 274 YKAMYPTVGTL--ADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGI--------FD 323
+A T AD+ AA D GV I+ S G + T
Sbjct: 77 ARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLL 136
Query: 324 VLMLFARRAGVFVVQAAGNQGPA-PSTVVSYSPWAVA 359
+ A AG V AAGN G A PS + P+
Sbjct: 137 AALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEP 173
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPML 590
+ A F + S P + KPDV APG +++A +
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPD------SPPDEYTKPDVAAPGVDVYSARQGANG----- 209
Query: 591 TGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTA 635
+ LSGTSMA PH+AG+AAL+ +P +P I A++ TA
Sbjct: 210 -DGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 59/217 (27%), Positives = 80/217 (36%), Gaps = 74/217 (34%)
Query: 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215
G+ + +DTGI+ SHP IV F+
Sbjct: 1 GVKVAVIDTGIDSSHPDLKL----------------------------NIVGGANFTGD- 31
Query: 216 QAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVY 274
D D GHG+HVA AA + GV VV G+AP A +
Sbjct: 32 ----------DNNDYQDGNGHGTHVAGIIAALDNGVGVV----------GVAPEADLYAV 71
Query: 275 KAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAG 333
K + GT +D+IA I+ A +G+DI+ +S+G + A AG
Sbjct: 72 KVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSP---ALREAIK----KAYAAG 124
Query: 334 VFVVQAAGNQG--------PA--PSTVVSYSPWAVAA 360
+ VV AAGN G PA PS + AV A
Sbjct: 125 ILVVAAAGNSGNGDSSYDYPAKYPSVI------AVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-11
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 70 MDSHDRILQSTLEIGS-YNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKL 128
SH S+ E + + LYS+K+ NGFA LT +A+KL P V+ VE D+ +L
Sbjct: 16 FSSHKSWHASSKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQVVEL 75
Query: 129 M 129
Sbjct: 76 H 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 46/147 (31%), Positives = 55/147 (37%), Gaps = 31/147 (21%)
Query: 535 ASFEGRAPIVSRFSSRGPD----FTDLSRNPTDVL--KPDVIAPGHQIWAAWSPVSALDP 588
A G P + G R PT + KPDV AP V D
Sbjct: 153 AVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDG----VNGTVD-GDG 207
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAE 648
NF GTS A PH AG+AAL+ NP TP I A+ STA +
Sbjct: 208 D-GPPNF---FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALD-------MGEP 256
Query: 649 GFEITSTYNSTHFDFGSGLVSATRALD 675
G++ GSGLV A RA+
Sbjct: 257 GYD---------NASGSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-11
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625
D+ APG I ++ + G +A LSGTSMA P +AG+AAL+ NP TP
Sbjct: 181 GVDIAAPGGDILSSPTTG--------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPA 232
Query: 626 MIASAISST 634
+ +A+ ST
Sbjct: 233 QVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG I + G + +SGTSMATPH+AG AAL+ NP+ T I
Sbjct: 201 DLAAPGVDILSTSP----------GGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQI 250
Query: 628 ASAISSTAT 636
AI S+A
Sbjct: 251 KDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCN--FALLSGTSMATPHIAGIAALIKQHNPSWTPT 625
D+ APG I +AW G + A LSGTSMA PH+AG+AA + P +P
Sbjct: 194 DIFAPGVDILSAWI----------GSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPA 243
Query: 626 MIASAISSTATK 637
+ + + + ATK
Sbjct: 244 EVKARLLNLATK 255
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-11
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 45/194 (23%)
Query: 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216
+ + +D+GI+P HP N +IS +S + + G +
Sbjct: 2 VTVAVIDSGIDPDHPDLKN------SISSYSKNLVPKGGY----------------DGKE 39
Query: 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKA 276
A T + + D +GHG+ VA A N + G+AP I Y+
Sbjct: 40 AGETGDIN----DIVDKLGHGTAVAGQIAANGNI------------KGVAPGIGIVSYRV 83
Query: 277 M-YPTVGTLADVIAAIDQATMDGVDILTLSIG-----PDEPPRDTITMLGIFDVLMLFAR 330
+ +I AI A DGVD++ LS+G E D + + +A+
Sbjct: 84 FGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN-YAK 142
Query: 331 RAGVFVVQAAGNQG 344
G VV AAGN G
Sbjct: 143 SKGSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 53/247 (21%), Positives = 78/247 (31%), Gaps = 52/247 (21%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G+G ++G DTG++ +H F + N + N+ H KIV S
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLFH-----------------RKIVRYDSLS- 47
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
+ D GHG+HVA AG D L G+AP A++
Sbjct: 48 --------------DTKDDVDGHGTHVAGIIAGKG-----NDSSSISLYKGVAPKAKLYF 88
Query: 274 YKAMYPTVGTLADVIAAIDQATMD--GVDILTLSIGPDEPPR-DTITMLGIFDVLMLFAR 330
+ + + M G I + S G + +D FA
Sbjct: 89 QDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARA--YD---QFAY 143
Query: 331 RA-GVFVVQAAGNQGPAPSTVVSYSPWA---VAAAACTTDRIYPGSLLLGNGLKLGGVGL 386
+ V +AGN G S + A + A + G LG V
Sbjct: 144 NNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVAS 203
Query: 387 S---GPT 390
GPT
Sbjct: 204 FSSRGPT 210
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 56/228 (24%), Positives = 81/228 (35%), Gaps = 68/228 (29%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
+W + G GEG+V+ +D+G++P+H +F L +
Sbjct: 2 LWDKGGYK---GEGMVVAVIDSGVDPTHDAFR-----------------------LDDDS 35
Query: 203 GKIVSARFFSAGAQAVAT----LNTSVDF-----------LSPFDAVGHGSHVASTAAGN 247
S F + +A N V F L D HG HVA AGN
Sbjct: 36 KAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDEDDGSSHGMHVAGIVAGN 95
Query: 248 AGVPVVVDGFFYGLASGMAPCARIAVYK----AMYPTVGTLADVIAAIDQATMDGVDILT 303
+G G+AP A++ K + AI+ A G D++
Sbjct: 96 GDEEDNGEGI-----KGVAPEAQLLAMKVFSNPEGGSTYD-DAYAKAIEDAVKLGADVIN 149
Query: 304 LSIG-------PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+S+G D+P + I AR AGV VV AAGN G
Sbjct: 150 MSLGSTAGFVDLDDPEQQAIK----------RAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 38/192 (19%)
Query: 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215
+V+ +DTG++ +HP + P +G + G NG +
Sbjct: 3 DVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDG--------NGYV---------- 44
Query: 216 QAVATLNTSVDFLSPFDAVGHGSHVAST--AAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
+ N + P D GHG+HVA A GN G+ + G+A +I
Sbjct: 45 DDIYGWNFVNNDNDPMDDNGHGTHVAGIIGAVGNNGIGIA----------GVAWNVKIMP 94
Query: 274 YKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRA 332
K + GT +D I AID A G I+ S G P + + D + A A
Sbjct: 95 LKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQ------ALRDAIAR-AIDA 147
Query: 333 GVFVVQAAGNQG 344
G+ V AAGN G
Sbjct: 148 GILFVAAAGNDG 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-10
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 534 VASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGC 593
V ++ ++ FS RGP +KPD+ APG I A G
Sbjct: 349 VGAYNQNNNSIAIFSGRGP-------TRDGRIKPDIAAPGVNILTA----------SPGG 391
Query: 594 NFALLSGTSMATPHIAGIAALIKQ------HNPSWTPTMIASAISSTATKYDNY 641
+ SGTS+A +AG AL+ Q ++P I + + A +
Sbjct: 392 GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGD 445
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 52/213 (24%), Positives = 72/213 (33%), Gaps = 58/213 (27%)
Query: 154 GEGIVIGFVDTGINPSHPSF-ANYNPFEPN-ISHFSGDCETGPRFPLSSCNGKIVSARFF 211
G GIV+ +DTG++ +HP+ Y + H +F
Sbjct: 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADH---------------------DYNWF 39
Query: 212 SAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR- 270
P+D GHG+H T GN G G G+AP AR
Sbjct: 40 DPVGNTPL----------PYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARW 80
Query: 271 IAVYKAMYPTVGTLADVIAAID---QATMDGVDILTLSIGPD-------EPPRDTITMLG 320
IA +A+ G AD + T + + PD P D +
Sbjct: 81 IAC-RALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQP 139
Query: 321 IFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY 353
R AG+F V AAGN GP ST+ +
Sbjct: 140 AVAAW----RAAGIFPVFAAGNDGPRCSTLNAP 168
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 54/206 (26%)
Query: 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215
G+ + +DTG++ HP A G++ F
Sbjct: 1 GVTVAVLDTGVDADHPDLA----------------------------GRVAQWADF---- 28
Query: 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYK 275
N + FDA GHG+HV+ T G G G+ G+AP A + K
Sbjct: 29 ----DENRRISATEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGK 75
Query: 276 AMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVF 335
+ G+L+ +IA ++ A D++++S+G D + + + + + G
Sbjct: 76 VLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLE-----EAVEALSNQTGAL 130
Query: 336 VVQAAGNQGPAPSTVVSYSPWAVAAA 361
V +AGN+G S SP + AA
Sbjct: 131 FVVSAGNEGHGTSG----SPGSAYAA 152
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV APG I + ++A +SGTSMATPH+AG+AAL+ P + + +
Sbjct: 200 DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEV 248
Query: 628 ASAISSTATK 637
A+ TA
Sbjct: 249 RDALKKTADD 258
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 55/231 (23%), Positives = 83/231 (35%), Gaps = 72/231 (31%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G G+ + +DTGI+ +HP+FA G+ ++ + F
Sbjct: 7 GAGVRVAVLDTGIDLTHPAFA----------------------------GRDITTKSFVG 38
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
G D GHG+H A T G V G YG+A G A IA+
Sbjct: 39 GE-------------DVQDGHGHGTHCAGTIFGRD-----VPGPRYGVARG----AEIAL 76
Query: 274 YKAMY-PTVGTLADVIAAIDQATMDGVDILTLSIGPDEP-------PRDTIT-------- 317
+ G ++A I A +G D++++S+G D P P
Sbjct: 77 IGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYR 136
Query: 318 -MLGIFDVLM-----LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAA 362
+FD LM A G +V AAGN+ P+ + A +A
Sbjct: 137 QRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSA 187
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 21/104 (20%)
Query: 532 GRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLT 591
G V + +A FSS GP R LKPDV+A G I+
Sbjct: 178 GAVDANGNKAS----FSSIGPTA--DGR-----LKPDVMALGTGIYVINGDG-------- 218
Query: 592 GCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTA 635
N +GTS + P IAG+ A + Q +P+WT I AI +A
Sbjct: 219 --NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-08
Identities = 26/137 (18%), Positives = 42/137 (30%), Gaps = 21/137 (15%)
Query: 372 SLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFE 431
+ LGNG + G L + K + C P + +
Sbjct: 1 VVTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------------GDVDASLCL-PGSLD 46
Query: 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVP 491
PS V+G +V+C ++ A + G G IL + G V +P
Sbjct: 47 PSKVKGKIVLCDRGGN-----TSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD-AHVLP 100
Query: 492 GILIPKVSTSEIILQYY 508
+ + IL Y
Sbjct: 101 AVHVDY-EDGTAILSYI 116
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|218971 pfam06280, DUF1034, Fn3-like domain (DUF1034) | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-08
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 11/99 (11%)
Query: 716 HPANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQG 775
H + TVS L +V + TE YL G ++ PP T+ G
Sbjct: 17 HNLGNKAVTYTVSH-------LGVLTDVVDTTEGYLILASADPGAALTFSPPTVTVPAGG 69
Query: 776 TQDLAIQFNVTQ---AIGDFSFGEIVLTGSLNH-IVRIP 810
+ + + + A G F G + GS + +P
Sbjct: 70 SATVTVTLTLPSGFDANGYFLEGFVTFKGSDGSPSLSVP 108
|
This family consists of several domains of unknown function which are present in several bacterial and plant peptidases. This domain is found in conjunction with pfam00082, pfam02225 and is often found with pfam00746. This domain has a structure similar to an Fn3 domain. Length = 110 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 19/104 (18%)
Query: 567 PDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626
D+ APG I +A G + +SGTSMATPH+AG+AAL + P
Sbjct: 213 VDIAAPGVDIVSAA----------PGGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRA 262
Query: 627 IASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSA 670
+A+ + + +L A + + G GL A
Sbjct: 263 LAALLQA---------RLTAARTTQFAPGLDLPDRGVGLGLAPA 297
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 568 DVIAPG----HQIWAAWSPVSALD-PMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSW 622
DV APG + P S G + L GTSMA PH+AG+AAL+K NPS
Sbjct: 214 DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSL 273
Query: 623 TPTMIASAISST 634
TP I S + ST
Sbjct: 274 TPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 571 APGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASA 630
APG I++ G + +SGTS A PH++G AAL+ Q P T +
Sbjct: 210 APGENIYSTDP--------DGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQT 261
Query: 631 ISSTAT 636
+ +TAT
Sbjct: 262 LLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSP------VSALDPMLTGCNFAL 597
+S FS+ G DL+ D L D W L G +A
Sbjct: 203 LSSFSNYGNSRIDLAAPGGDFLLLDQYGKE-----KWVNNGLMTKEQILTTAPEGG-YAY 256
Query: 598 LSGTSMATPHIAGIAALIKQHNPSWTPTM 626
+ GTS+A P ++G ALI NP P
Sbjct: 257 MYGTSLAAPKVSGALALIIDKNPLKKPPD 285
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 53/224 (23%), Positives = 75/224 (33%), Gaps = 65/224 (29%)
Query: 154 GEGIVIGFVDTGINPSHPSF----------------ANYNPFEPNISHFSGDCETGPRFP 197
G+G+++G +DTGI+ HP F P E
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAA 62
Query: 198 LSSCN-GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDG 256
L+S N IV +R D GHG+HVA AAGN
Sbjct: 63 LASDNPYDIVPSR----------------------DENGHGTHVAGIAAGN---GDNNPD 97
Query: 257 FFYGLASGMAPCARIAVYK---AMYPTVGTLADVIAAIDQATMDGVDILT---------- 303
F G+AP A + V K A DV + M + L
Sbjct: 98 F-----KGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPL 152
Query: 304 ---LSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
+S+G + D ++L + +R G+ VV AGN+G
Sbjct: 153 VINISLGTNFGSHDGTSLLE--RYIDAISRLRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 8e-06
Identities = 56/236 (23%), Positives = 76/236 (32%), Gaps = 81/236 (34%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
D + G G+ + +DTGI +H F G+ +
Sbjct: 20 DSSTGSGVDVYVLDTGIRTTHVEF----------------------------GGRAIWGA 51
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
F G D GHG+HVA T G YG+A
Sbjct: 52 DFVGGDPDS-------------DCNGHGTHVAGTVGGKT----------YGVAKK---AN 85
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGVD-----ILTLSIGPDEPPRDTITMLGIFD 323
+AV K + GTL+ +IA ++ D + +S+G D
Sbjct: 86 LVAV-KVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGAST--------ALD 136
Query: 324 VLMLFARRAGVFVVQAAGNQG-PAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
+ A AGV VV AAGN A +YSP A A A T D S
Sbjct: 137 AAVAAAVNAGVVVVVAAGNSNQDAC----NYSP-ASAPEAITVGATDSDDARASFS 187
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 567 PDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626
D+ APG I +L P G A SGTS A P ++G AAL++ P T
Sbjct: 200 VDLAAPGENI-------VSLSPGGDG--LATTSGTSFAAPFVSGTAALVRSRFPDLTAAQ 250
Query: 627 IASAISSTA 635
+ I +TA
Sbjct: 251 VRRRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 568 DVIAPG-HQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPS 621
D+ APG I + + G N+ LSGTSMA PH++G+AAL+ P
Sbjct: 209 DIAAPGVGTILSTVPKLDGDG----GGNYEYLSGTSMAAPHVSGVAALVLSKFPD 259
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 48/225 (21%), Positives = 73/225 (32%), Gaps = 77/225 (34%)
Query: 159 IGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAV 218
+G +DTGI+ +HP+ + I F GA A
Sbjct: 3 VGMIDTGIDTAHPALSA---------------------------VVIARLFFAGPGAPAP 35
Query: 219 ATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARI----AVY 274
+ HG+ VAS AG G+ P A +
Sbjct: 36 SA---------------HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFG 69
Query: 275 KAMYPTVGTLADVIAAIDQATMDGVDILTLSI-GPDEPPRDTITMLGIFDVLMLFARRAG 333
+A + + A+D GV ++ +S+ GP + + A G
Sbjct: 70 RAGGGEGASALALARALDWLAEQGVRVVNISLAGPPNA---------LLAAAVAAAAARG 120
Query: 334 VFVVQAAGNQGPA--PSTVVSY-SPWAVAAAACTTD---RIYPGS 372
+ +V AAGN GPA P +Y AV A D R+Y +
Sbjct: 121 MVLVAAAGNDGPAAPPLYPAAYPGVIAVTA----VDARGRLYREA 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 34/98 (34%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAA---WSPVSALDPMLTGCNFALLSGTSM 603
+SSRGP + KPD+ A G WA ALD F L GTSM
Sbjct: 224 WSSRGP-------SIAGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEA---FDLFGGTSM 273
Query: 604 ATPHIAGIAALI------KQHNPSWTPTMIASAISSTA 635
ATP AG AAL+ K+ + P ++ + + STA
Sbjct: 274 ATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
++RFSSRG +L V KPD++ G ++ S L GC LSGTS+
Sbjct: 166 IARFSSRGMTTWELPGGYGRV-KPDIVTYGSGVYG-----SKLK---GGCR--ALSGTSV 214
Query: 604 ATPHIAGIAAL----IKQHNPSWTPTMIASAISSTATK 637
A+P +AG AL + + P + A+ +AT+
Sbjct: 215 ASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATR 252
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-05
Identities = 52/220 (23%), Positives = 73/220 (33%), Gaps = 36/220 (16%)
Query: 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFF 211
G GI++ VDTG++ +HP + +G N +
Sbjct: 7 TGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNG--------YNFVPNVGDI----- 53
Query: 212 SAGAQAVATLNTSVDFLSPFDAVGHGSHVAST--AAGNAGVPVVVDGFFYGLASGMAPCA 269
D GHG+HVA T A N G V G+A G
Sbjct: 54 --------------DNDVSVGG-GHGTHVAGTIAAVNNNGGGVGGIAGAGGVAPG-VKIM 97
Query: 270 RIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFA 329
I ++ Y V AAI A +G IL S G + + FD + A
Sbjct: 98 SIQIFAGRYY--VGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENA 155
Query: 330 RRA---GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTD 366
+ G VV +AGN + P +A AA T+
Sbjct: 156 GGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN 195
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (106), Expect = 1e-04
Identities = 50/234 (21%), Positives = 72/234 (30%), Gaps = 57/234 (24%)
Query: 149 GDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSA 208
G G+G+ + +DTG++ SHP A +
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDLAGSAVAGGDFV------------------------ 171
Query: 209 RFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPC 268
D GHG+HVA T A V G+A G
Sbjct: 172 --------------DGDPEPPFLDDNGHGTHVAGTI---AAVIFDNGAGVAGVAPG---- 210
Query: 269 ARIAVYKAMYPTVG--TLADVIAAIDQATMDG--VDILTLSIGPDEPPRDTITMLGIFDV 324
A++ + K + G L+DV I+ A G D++ LS+G + +
Sbjct: 211 AKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALA- 269
Query: 325 LMLFARRAGVFVVQAAGNQGPA-----PSTVVSYSPWAVAAAACTTDRIYPGSL 373
A GV +V AAGN G + SY V A S
Sbjct: 270 --AAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASF 321
|
Length = 508 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPH 607
SSRGP L + APG A + V P T L++GTSM++P+
Sbjct: 333 SSRGP-------TADGALGVSISAPG----GAIASV----PNWTLQGSQLMNGTSMSSPN 377
Query: 608 IAGIAALI----KQHNPSWTPTMIASAISSTATK 637
G AL+ K +TP + A+ +TA K
Sbjct: 378 ACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (103), Expect = 3e-04
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
V+ FS+ G D+ APG I + S V+ L G ++ LSGTSM
Sbjct: 318 VASFSNDGSPTG-----------VDIAAPGVNILSL-SAVNTLPGD--GADYVTLSGTSM 363
Query: 604 ATPHIAGIAALIKQHNP-SWTPTMIASAISSTA 635
A PH++G+AAL+ NP TP + + I +TA
Sbjct: 364 AAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
DV APG +I++ + SGTSMA P ++G+AALI + P+ T +
Sbjct: 233 DVFAPGERIYST----------TPDNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEV 282
Query: 628 ASAISSTAT 636
I +
Sbjct: 283 KQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 18/106 (16%)
Query: 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP 588
I S + RA +S+ G D++APG IW + +
Sbjct: 155 IAVAATDSNDARAS----YSNYGNYV-------------DLVAPGVGIWTTGTGRGSA-G 196
Query: 589 MLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISST 634
G + SGTS A+P AG+AALI NP+ TP + ++ST
Sbjct: 197 DYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 211 FSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAA--GNAGVPVVVDGFFYGLASGMAPC 268
S + V N + D GHG+ A AA GN G+ V +G+AP
Sbjct: 17 LSGKPKLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGV----------AGVAPG 66
Query: 269 ARI-AVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGP-DEPPRDTITMLGIFDVLM 326
A++ V A +D+ AI A +G D+++ S G D + +
Sbjct: 67 AKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAAT--- 123
Query: 327 LFAR-RAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT 364
+ R G V+ AAGN G + S+ + +P +A AA
Sbjct: 124 -YGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 64/253 (25%), Positives = 93/253 (36%), Gaps = 57/253 (22%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRF--PLSSCNGKIVSARFF 211
GEG+VI VDTG++ SHP Y G+ +F G F+
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIY-----------GNFSWKLKFDYKAYLLPGMDKWGGFY 49
Query: 212 SAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYG--LASGMAPCA 269
+ F HG+ AS AAG G + G L G+AP A
Sbjct: 50 V--------------IMYDFF--SHGTSCASVAAGR-GKMEYNLYGYTGKFLIRGIAPDA 92
Query: 270 RIAVYKAMYPTVGTLA-------DVIAAIDQATMDG---VDILTLSIG-------PDEPP 312
+IA KA++ A D + G VD+++ S G P
Sbjct: 93 KIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPG 152
Query: 313 RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS--YSPWAVAAAACTTDRIYP 370
D ++ + D L+ + GV +V AAGN GP T+ + + A++ A T+ Y
Sbjct: 153 LDISSL--VIDALVTY---TGVPIVSAAGNGGPGYGTITAPGAASLAISVGA-ATNFDYR 206
Query: 371 GSLLLGNGLKLGG 383
L G G
Sbjct: 207 PFYLFGYLPGGSG 219
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 31/132 (23%)
Query: 236 HGSHVAST--AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQ 293
HG+HVA T A N GV V +G+A ARI + + GTL+D++ +
Sbjct: 73 HGTHVAGTIAAVTNNGVGV----------AGVAWGARILPVRVLGKCGGTLSDIVDGMRW 122
Query: 294 A---TMDGV-------DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQ 343
A + GV ++ LS+G D + TM + R GV VV AAGN+
Sbjct: 123 AAGLPVPGVPVNPNPAKVINLSLGGDGAC--SATMQNAIND----VRARGVLVVVAAGNE 176
Query: 344 GPAPSTVVSYSP 355
G S+ +P
Sbjct: 177 G---SSASVDAP 185
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 26/124 (20%)
Query: 236 HGSHVASTAAGN-AGVPVVVDGFFYGLASGMAPCARIAVYK-------AMYPTVGTLADV 287
HG+HVA AA + P +G+AP A+I K +M + +
Sbjct: 187 HGTHVAGIAAAHFPEEPER---------NGVAPGAQIVSIKIGDTRLGSMETGTALVRAM 237
Query: 288 IAAIDQATMDGVDILTLSIGPDEPPRDTITMLG-IFDVLMLFARRAGVFVVQAAGNQGPA 346
IAAI+ D++ +S G ++ G I +++ + GV V +AGN GPA
Sbjct: 238 IAAIET----KCDLINMSYGEATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPA 289
Query: 347 PSTV 350
STV
Sbjct: 290 LSTV 293
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYP---------TVG 282
D GHG+ VA AG G DGF SG+AP ARI + VG
Sbjct: 49 DCDGHGTLVAGIIAGRPGEG---DGF-----SGVAPDARILPIRQTSAAFEPDEGTSGVG 100
Query: 283 TLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGN 342
L + AI +A G D++ +S+ P + + +A GV VV AAGN
Sbjct: 101 DLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVR-YALDKGVVVVAAAGN 159
Query: 343 QG-PAPSTVVSYSPW 356
G T V Y W
Sbjct: 160 TGGDGQKTTVVYPAW 174
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 595 FALLSGTSMATPHIAGIAALIKQHNPS 621
+ L+GTSMA PH+A IA+LI NPS
Sbjct: 550 YRKLNGTSMAAPHVAAIASLILSINPS 576
|
Length = 639 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.97 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.83 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.71 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 99.29 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.86 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.8 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.79 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.29 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.26 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.23 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.22 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.06 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.05 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.02 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.02 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.99 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.95 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.93 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.92 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.89 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.89 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.86 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.82 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.77 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.42 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.71 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 96.18 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 95.81 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 95.76 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 95.67 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 95.35 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 95.31 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 95.15 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 95.06 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 93.36 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 92.06 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 91.94 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 91.14 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 90.3 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 89.93 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 89.33 | |
| PF05506 | 89 | DUF756: Domain of unknown function (DUF756); Inter | 88.39 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 87.83 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 87.45 | |
| smart00635 | 81 | BID_2 Bacterial Ig-like domain 2. | 82.58 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 82.3 | |
| PF00635 | 109 | Motile_Sperm: MSP (Major sperm protein) domain; In | 82.11 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-51 Score=443.78 Aligned_cols=231 Identities=48% Similarity=0.759 Sum_probs=189.4
Q ss_pred ccccccCCCCccCCCcccccc-cCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCc
Q 003446 126 AKLMTSYTPQFLGLPQGVWTQ-RGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGK 204 (819)
Q Consensus 126 ~~~~~~~~~~~~g~~~~~w~~-~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~k 204 (819)
+++++++++.+++++. .|.. .+..+++|+||+|||||||||++||+|.+. ........|.+.|..+..+....||+|
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADV-GGGPYPHTWPGDCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccC-CCCCCCCCCCCcccCCCCcCccCcCCe
Confidence 4677889999999987 8876 455689999999999999999999999986 112223389999999988888889999
Q ss_pred eEEEEEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-CCC
Q 003446 205 IVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGT 283 (819)
Q Consensus 205 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g~~ 283 (819)
+++.++|.++.......+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++.. .+.
T Consensus 79 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~ 158 (307)
T cd04852 79 LIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCF 158 (307)
T ss_pred EEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCcc
Confidence 9999999876433222223344567789999999999999998765555555566678899999999999999984 488
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEcc
Q 003446 284 LADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAA 362 (819)
Q Consensus 284 ~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA 362 (819)
.+++++||++|++++++|||||||.... ..+.+.++.++..+.++|++||+||||+|+...+.++..||+++|||
T Consensus 159 ~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga 233 (307)
T cd04852 159 GSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233 (307)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEe
Confidence 8999999999999999999999998643 22446788888999999999999999999877777778888888875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=449.83 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=121.9
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCC-CCCCCCCCCCCccccCCCCCCCCCCCc--eEEEEEcccchhhccccCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYN-PFEPNISHFSGDCETGPRFPLSSCNGK--IVSARFFSAGAQAVATLNTSVDF 227 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~-~~~~~~~~~~~~~~~g~~~~~~~~n~k--i~g~~~~~~~~~~~~~~~~~~~~ 227 (819)
+.+|+||+|||||||||++||||.++. .....+...++... ..|+. -+.+++|+++ .
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDd--------D~nG~vdd~~G~nfVd~------------~ 371 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDD--------DNNGNVDDEYGANFVNN------------D 371 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhcccccccccCcccccc--------ccCCcccccccccccCC------------C
Confidence 478999999999999999999999871 10100000111110 01111 1234555532 2
Q ss_pred CCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCC
Q 003446 228 LSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSI 306 (819)
Q Consensus 228 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~Sl 306 (819)
.+|.|.+||||||||||||...++ ..+.||||+|+|+++|+++..| +..+++++||+||++.|++||||||
T Consensus 372 ~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 372 GGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 457899999999999999975322 2368999999999999999877 8889999999999999999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 347 (819)
|+.. +...+..|+++|.++||+||+||||+|...
T Consensus 444 G~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~ 477 (639)
T PTZ00262 444 SFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTK 477 (639)
T ss_pred ccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCc
Confidence 9743 235788999999999999999999998653
|
|
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=417.56 Aligned_cols=290 Identities=30% Similarity=0.351 Sum_probs=190.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|||||||||++||||.++... .|...++ +.++++.+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~-----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF-----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC-----CcccccC---------cCCCccCCcCCCCC-----------ccCCCCCc
Confidence 89999999999999999999865100 1111000 00112222222211 11346789
Q ss_pred CCCccccccccccCCCcccccccc-cccccccccCCCeEEEEEeecCCC-CCHHHHHH-------HHHHH--HhCCCcEE
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGF-FYGLASGMAPCARIAVYKAMYPTV-GTLADVIA-------AIDQA--TMDGVDIL 302 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~-------ai~~a--~~~g~dVI 302 (819)
+||||||||||||.........++ ....+.||||+|+|+++|++...+ .....+.. +++|+ .+++++||
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VI 135 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVI 135 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEE
Confidence 999999999999975321110000 112468999999999999997543 32222222 34444 36899999
Q ss_pred EeCCCCCCCC-CCccccccHHHHHHHHH-HhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 303 TLSIGPDEPP-RDTITMLGIFDVLMLFA-RRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 303 n~SlG~~~~~-~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
|||||..... .....-.+..+.+++.+ .++||++|+||||+|+... ..|+.++++|+|||++.....+
T Consensus 136 N~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-------- 207 (311)
T cd07497 136 SNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-------- 207 (311)
T ss_pred EecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc--------
Confidence 9999975422 11000112333333332 4899999999999998643 3466789999999975321100
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
.|... .|
T Consensus 208 ------------------~~~~~---------------------~~---------------------------------- 214 (311)
T cd07497 208 ------------------FYLFG---------------------YL---------------------------------- 214 (311)
T ss_pred ------------------hhhhc---------------------cc----------------------------------
Confidence 00000 00
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
.
T Consensus 215 -------------------------------------------------------------------------------~ 215 (311)
T cd07497 215 -------------------------------------------------------------------------------P 215 (311)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
...+.++.||||||+.+ +++||||+|||++|+++.+.............|..++|||||||||||++|||+|+
T Consensus 216 ~~~~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~ 288 (311)
T cd07497 216 GGSGDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISA 288 (311)
T ss_pred CCCCCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHH
Confidence 11246899999999986 79999999999999998764432111112347999999999999999999999998
Q ss_pred CC------CCCHHHHHHHHHhcc
Q 003446 619 NP------SWTPTMIASAISSTA 635 (819)
Q Consensus 619 ~P------~~sp~~ik~~L~~TA 635 (819)
+| .++|++||++|++||
T Consensus 289 ~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 289 LKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hhhhcCCCCCCHHHHHHHHHhcC
Confidence 76 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=405.89 Aligned_cols=244 Identities=27% Similarity=0.366 Sum_probs=193.8
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||||||.+||+|.+... ..+|.. ....
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~-----------------------------~~~~~~-------------~~~~ 41 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE-----------------------------RTNWTN-------------EKTL 41 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc-----------------------------ccccCC-------------CCCC
Confidence 8999999999999999999999985310 011111 1234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..||||||||||+|+.. ...||||+|+|+.+|++.+.+ +..+.++++++||+++++||||||||..
T Consensus 42 ~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~ 110 (255)
T cd07479 42 DDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGP 110 (255)
T ss_pred CCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCC
Confidence 5778999999999999742 247999999999999998876 6678899999999999999999999975
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC--cccCCcceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST--VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
.. ....+.+++.++.++|++||+||||+|+...+ .|+..+++|+|||+..
T Consensus 111 ~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~---------------------- 162 (255)
T cd07479 111 DF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF---------------------- 162 (255)
T ss_pred CC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc----------------------
Confidence 32 22456677888899999999999999975433 4556678888876321
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
.+.++.|
T Consensus 163 -------------------------------------------------------------------------~~~~~~~ 169 (255)
T cd07479 163 -------------------------------------------------------------------------DDNIARF 169 (255)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1346788
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC----CCC
Q 003446 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP----SWT 623 (819)
Q Consensus 548 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~~s 623 (819)
||+|++.... +...+++||||.|||.+|+++.. ++.|..++|||||||||||++|||+|++| .++
T Consensus 170 S~~g~~~~~~-p~~~g~~~~di~apG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~ 238 (255)
T cd07479 170 SSRGMTTWEL-PGGYGRVKPDIVTYGSGVYGSKL----------KGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLIN 238 (255)
T ss_pred cCCCCCcccc-cCCCCCcCccEEecCCCeecccc----------CCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCC
Confidence 9999653110 00126789999999999998763 34789999999999999999999999998 689
Q ss_pred HHHHHHHHHhcccccc
Q 003446 624 PTMIASAISSTATKYD 639 (819)
Q Consensus 624 p~~ik~~L~~TA~~~~ 639 (819)
|.+||++|++||+++.
T Consensus 239 p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 239 PASMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHHHhhcccCC
Confidence 9999999999998763
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=432.66 Aligned_cols=430 Identities=21% Similarity=0.242 Sum_probs=237.5
Q ss_pred CCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccc-hhhccccCCCCCCCCC
Q 003446 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAG-AQAVATLNTSVDFLSP 230 (819)
Q Consensus 152 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~-~~~~~~~~~~~~~~~~ 230 (819)
++|+||+|||||||||+.||+|...++..+.+..|++....+.... ...++..+... ...........+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhcCCccccCcC
Confidence 4799999999999999999999988888888889999877543211 12222222221 1011011111222445
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-----------CCHHHHHHHHHHHHhC--
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-----------GTLADVIAAIDQATMD-- 297 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-- 297 (819)
.|.+||||||||||||+...+ ..+.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 689999999999999986421 3468999999999999998865 4678999999999975
Q ss_pred ---CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeE
Q 003446 298 ---GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSL 373 (819)
Q Consensus 298 ---g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~ 373 (819)
.+.|||||||...++. ...+.++++++.+..+ |++||+||||+|....+.... +... ...-.-.+
T Consensus 147 ~~~~p~VInlSlG~~~g~~---~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~----~~~~----~~~~~ie~ 215 (455)
T cd07478 147 ELNKPLVINISLGTNFGSH---DGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGG----IVPN----GETKTVEL 215 (455)
T ss_pred HhCCCeEEEEccCcCCCCC---CCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeee----eccC----CceEEEEE
Confidence 3579999999876552 1236788888887776 999999999999854333210 0000 00000111
Q ss_pred EeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCcc
Q 003446 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTS 453 (819)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~ 453 (819)
.++.++......+....+ ..+.+..-........... ..... ...+....-..+|.+..+......|..
T Consensus 216 ~v~~~~~~~~~eiW~~~~----d~~~v~i~sP~Ge~~~~i~----~~~~~---~~~~~~~~~~t~i~v~y~~~~~~~g~~ 284 (455)
T cd07478 216 NVGEGEKGFNLEIWGDFP----DRFSVSIISPSGESSGRIN----PGIGG---SESYKFVFEGTTVYVYYYLPEPYTGDQ 284 (455)
T ss_pred EECCCCcceEEEEecCCC----CEEEEEEECCCCCccCccC----cCCCc---ceeEEEEECCeEEEEEEcCCCCCCCCe
Confidence 122211110000000000 0111100000000000000 00000 000000001112222222111111111
Q ss_pred chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccce
Q 003446 454 TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGR 533 (819)
Q Consensus 454 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (819)
.+.....+ ...|-.-+.++......+ ....++|.-.+...+. .++... ...++++.... ....
T Consensus 285 ~i~i~~~~-~~~GiW~i~~~~~~~~~g----~~~~Wlp~~~~~~~~t-----~f~~~~-----~~~tit~Pa~~--~~vi 347 (455)
T cd07478 285 LIFIRFKN-IKPGIWKIRLTGVSITDG----RFDAWLPSRGLLSENT-----RFLEPD-----PYTTLTIPGTA--RSVI 347 (455)
T ss_pred EEEEEccC-CCccceEEEEEeccCCCc----eEEEEecCcCcCCCCC-----EeecCC-----CCceEecCCCC--CCcE
Confidence 11111111 112333333333221111 1122233222211100 000000 00111111100 0000
Q ss_pred e-eeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHH
Q 003446 534 V-ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIA 612 (819)
Q Consensus 534 ~-~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 612 (819)
. ..+....+.++.||||||+.+ +++||||+|||++|+++++ ++.|..++|||||||||||++
T Consensus 348 tVga~~~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap~vaG~a 410 (455)
T cd07478 348 TVGAYNQNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAAIVAGAC 410 (455)
T ss_pred EEEEEeCCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHHHHHHHH
Confidence 1 112233457999999999987 6999999999999999985 458999999999999999999
Q ss_pred HHHHHhC------CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccc
Q 003446 613 ALIKQHN------PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSG 666 (819)
Q Consensus 613 ALl~q~~------P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG 666 (819)
|||+|++ |.|++++||++|++||++.. ...+++++||||
T Consensus 411 ALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~---------------~~~~pn~~~GyG 455 (455)
T cd07478 411 ALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP---------------GDEYPNPEWGYG 455 (455)
T ss_pred HHHHHhchhccCCCCCCHHHHHHHHHHhCccCC---------------CCCCCCCCCCCC
Confidence 9999975 56799999999999998874 124567889998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=406.75 Aligned_cols=271 Identities=27% Similarity=0.241 Sum_probs=201.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||||||.+||++.+...+ ++.+...+.. .....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~------------------------~l~~~~~~~~------------~~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG------------------------DLPGNVNVLG------------DLDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC------------------------CCCcceeecc------------ccCCC
Confidence 57999999999999999998855432000 1111111110 01234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
.|.++|||||||||+ ||||+|+|+.+|+.. ..+++++||+|++++|++|||||||...
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~----~~~~i~~ai~~a~~~g~~Vin~S~g~~~ 102 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG----GELDFAAAIRALAAAGADIIVDDIGYLN 102 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC----CHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 578899999999983 899999999988743 4788999999999999999999999754
Q ss_pred CCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCC
Q 003446 311 PPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSG 388 (819)
Q Consensus 311 ~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~ 388 (819)
.+. .....+..+++++.++ |++||+||||+|.... ..|+..|++|+|||++.+.....
T Consensus 103 ~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------- 162 (275)
T cd05562 103 EPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAF----------------- 162 (275)
T ss_pred CCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccc-----------------
Confidence 321 1224678888888887 9999999999998543 34678899999999754321000
Q ss_pred CCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCce
Q 003446 389 PTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFM 468 (819)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 468 (819)
..|. + .
T Consensus 163 ---------------------------------~s~~-------------------------~---------------~- 168 (275)
T cd05562 163 ---------------------------------GSDP-------------------------A---------------P- 168 (275)
T ss_pred ---------------------------------cccc-------------------------c---------------c-
Confidence 0000 0 0
Q ss_pred EEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeeccc
Q 003446 469 GFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFS 548 (819)
Q Consensus 469 g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FS 548 (819)
.......+.||
T Consensus 169 ---------------------------------------------------------------------~~~~s~~~~~~ 179 (275)
T cd05562 169 ---------------------------------------------------------------------GGTPSSFDPVG 179 (275)
T ss_pred ---------------------------------------------------------------------CCCcccccCCc
Confidence 00001345678
Q ss_pred ccCCCCCCCCCCCCCCCCCccccCCC-eEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHH
Q 003446 549 SRGPDFTDLSRNPTDVLKPDVIAPGH-QIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627 (819)
Q Consensus 549 S~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~i 627 (819)
++||+.+ +++||||+|||+ ++.+++ .++.|..++|||||||||||++|||+|++|+|++.||
T Consensus 180 ~~~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v 242 (275)
T cd05562 180 IRLPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADI 242 (275)
T ss_pred ccCcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8999875 589999999975 445443 3458999999999999999999999999999999999
Q ss_pred HHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 628 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|++|++||+++...+ .+..||||+||+.+|++
T Consensus 243 ~~~L~~tA~~~~~~g----------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 243 RDALRSTALDMGEPG----------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHhCcccCCCC----------------CCCCcCcCcccHHHHhh
Confidence 999999998874322 34679999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=415.64 Aligned_cols=314 Identities=28% Similarity=0.358 Sum_probs=230.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCcc----ccCCCCCCCCCCCceEEEEEcccchhhc
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDC----ETGPRFPLSSCNGKIVSARFFSAGAQAV 218 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~----~~g~~~~~~~~n~ki~g~~~~~~~~~~~ 218 (819)
+|++. .++|+||+|||||||||++||+|.+...... .|++.+ .........+++.+++++++|.+...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA---KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND-- 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc---ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC--
Confidence 67762 2489999999999999999999998722211 111001 11122334567889999999986510
Q ss_pred cccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecC--CC-CCHHHHHHHHHHHH
Q 003446 219 ATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYP--TV-GTLADVIAAIDQAT 295 (819)
Q Consensus 219 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~--~g-~~~~~i~~ai~~a~ 295 (819)
+.....|..+|||||||||+|...... ....+.||||+|+|+.+|+++. .+ .....+++++++++
T Consensus 74 -------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~ 141 (346)
T cd07475 74 -------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAV 141 (346)
T ss_pred -------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHH
Confidence 111144788999999999999864311 1134689999999999999974 33 67788999999999
Q ss_pred hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcc----------------cCCcceEE
Q 003446 296 MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVV----------------SYSPWAVA 359 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~vit 359 (819)
+.|++|||||||...... .....+..+++++.++|++||+||||+|....... ...+++|+
T Consensus 142 ~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~ 218 (346)
T cd07475 142 KLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLT 218 (346)
T ss_pred HcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceE
Confidence 999999999999865432 34567888999999999999999999986543211 11122222
Q ss_pred EccccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceE
Q 003446 360 AAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSV 439 (819)
Q Consensus 360 VgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gki 439 (819)
||++..
T Consensus 219 Vga~~~-------------------------------------------------------------------------- 224 (346)
T cd07475 219 VASANK-------------------------------------------------------------------------- 224 (346)
T ss_pred Eeeccc--------------------------------------------------------------------------
Confidence 222110
Q ss_pred EEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcc
Q 003446 440 VICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGV 519 (819)
Q Consensus 440 v~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 519 (819)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecc
Q 003446 520 AIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599 (819)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~s 599 (819)
.......+.++.||+|||+.. .++||||+|||.+|+++.. ++.|..++
T Consensus 225 ---------------~~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~~----------~~~~~~~~ 272 (346)
T cd07475 225 ---------------KVPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTVN----------DNTYGYMS 272 (346)
T ss_pred ---------------ccCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEecC----------CCceEeeC
Confidence 000112356889999999986 6899999999999999873 45799999
Q ss_pred cccchhhHHHHHHHHHHHh----CCCCCHHH----HHHHHHhcccccccCCCccccccccccccCCCCCccccccccccc
Q 003446 600 GTSMATPHIAGIAALIKQH----NPSWTPTM----IASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSAT 671 (819)
Q Consensus 600 GTSMAaP~VAG~aALl~q~----~P~~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~ 671 (819)
|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+..... .....+.+.++|+|+||+.
T Consensus 273 GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~----------~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 273 GTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE----------DTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC----------CCCccCCccccCcchhcHH
Confidence 9999999999999999997 79999877 7889999998532111 1345667888999999999
Q ss_pred ccCC
Q 003446 672 RALD 675 (819)
Q Consensus 672 ~Al~ 675 (819)
+|++
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=401.18 Aligned_cols=295 Identities=33% Similarity=0.385 Sum_probs=224.8
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|+. +++|+||+|||||+|||++||+|.++.... .++.+.++|..+... ..+
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~----------------------~~~~~~~d~~~~~~~--~~~ 56 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG----------------------CKVAGGYDFVGDDYD--GTN 56 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC----------------------ceeccccccCCcccc--ccc
Confidence 6776 899999999999999999999999862110 123333333322110 011
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 301 (819)
...+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|+++..+ ...+.++++++||++++++|
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~i 127 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADV 127 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 1223356678899999999999998642 2358999999999999998766 66777899999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC---CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
||||||....+. ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 128 In~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------- 188 (312)
T cd07489 128 ITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------- 188 (312)
T ss_pred EEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------
Confidence 999999865432 256777888899999999999999986432 2233445555555310
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
+.||+|||+.+ ...||||+|||++|+++++.. .+.|..++|||||||+|||++|||+|+
T Consensus 189 ------~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~ 247 (312)
T cd07489 189 ------SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQA 247 (312)
T ss_pred ------CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHh
Confidence 45789999886 589999999999999998642 236999999999999999999999999
Q ss_pred C-CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCCCeEEe
Q 003446 619 N-PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLS 681 (819)
Q Consensus 619 ~-P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~~lv~d 681 (819)
+ |.+++.+||++|++||.++...+..- ....+++...+|+|+||+.+|++..-.++
T Consensus 248 ~~~~~~~~~v~~~l~~ta~~~~~~~~~~-------~~~~~~~~~~~G~G~vn~~~a~~~~~~~~ 304 (312)
T cd07489 248 RHGKLSPAELRDLLASTAKPLPWSDGTS-------ALPDLAPVAQQGAGLVNAYKALYATTTLS 304 (312)
T ss_pred cCCCCCHHHHHHHHHHhCccccccCCCc-------cccCCCCHhhcCcceeeHHHHhcCCcccc
Confidence 9 99999999999999999876443210 01113567889999999999999765443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=388.67 Aligned_cols=249 Identities=28% Similarity=0.321 Sum_probs=201.2
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||+|||++||+|.+.. ... ...+..
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~--~~~-------------------------~~~~~~--------- 41 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGAN--LTP-------------------------LFTYAA--------- 41 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCc--ccc-------------------------ccCccc---------
Confidence 5766 899999999999999999999999751 000 000000
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCc
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVD 300 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~d 300 (819)
......|..+|||||||||+|+... .+.||||+|+|+.+|++...+ ....++++||+||+++|++
T Consensus 42 ---~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~ 108 (267)
T cd07476 42 ---AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAH 108 (267)
T ss_pred ---cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 0123456789999999999987531 357999999999999998754 3467899999999999999
Q ss_pred EEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeE
Q 003446 301 ILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLK 380 (819)
Q Consensus 301 VIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~ 380 (819)
|||||||..... ......+.+++++|.++|++||+||||+|......|+..|++|+|||+..+
T Consensus 109 VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 171 (267)
T cd07476 109 IINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------- 171 (267)
T ss_pred EEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------
Confidence 999999975422 123467889999999999999999999998777778888999999874210
Q ss_pred EeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHH
Q 003446 381 LGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVIN 460 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~ 460 (819)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCC
Q 003446 461 TAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGR 540 (819)
Q Consensus 461 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC
Q 003446 541 APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP 620 (819)
Q Consensus 541 ~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 620 (819)
+.++.||+||+.. .||||+|||.+|+++.+ ++.|..++|||||||||||++|||+|++|
T Consensus 172 -~~~~~~s~~g~~~----------~~~~l~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aALl~s~~~ 230 (267)
T cd07476 172 -GLPLKFSNWGADY----------RKKGILAPGENILGAAL----------GGEVVRRSGTSFAAAIVAGIAALLLSLQL 230 (267)
T ss_pred -CCeeeecCCCCCC----------CCceEEecCCCceeecC----------CCCeEEeccHHHHHHHHHHHHHHHHHhhh
Confidence 2356789999764 47899999999999874 45899999999999999999999999988
Q ss_pred C----CCHHHHHHHHHhcccccccCC
Q 003446 621 S----WTPTMIASAISSTATKYDNYG 642 (819)
Q Consensus 621 ~----~sp~~ik~~L~~TA~~~~~~g 642 (819)
. ++|++||++|++||+++...+
T Consensus 231 ~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 231 RRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred hhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 7 899999999999999986443
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=393.29 Aligned_cols=267 Identities=24% Similarity=0.315 Sum_probs=187.9
Q ss_pred CCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCce--EEEEEcccchhhc-----cccC-----
Q 003446 155 EGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKI--VSARFFSAGAQAV-----ATLN----- 222 (819)
Q Consensus 155 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki--~g~~~~~~~~~~~-----~~~~----- 222 (819)
|+|+|||||||||++||||++. .|....+...+-..+..|+.+ +++++|....... ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~--------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK--------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh--------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999987 333222210000011112211 3455554311000 0000
Q ss_pred -CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcE
Q 003446 223 -TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dV 301 (819)
...+...+.+..+|||||||||+|...++ ..+.||||+|+|+.+|++.......+++++||+||++.|++|
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcE
Confidence 01122345578999999999999975432 236799999999999998654467789999999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCccc-----------CCcceEEEccccccceee
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS-----------YSPWAVAAAACTTDRIYP 370 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-----------~~p~vitVgAs~~~~~~~ 370 (819)
||||||..... ....++.++++|.++|+++|+||||+|.+....+. ..+++|+|||+..
T Consensus 145 iN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~----- 214 (291)
T cd07483 145 INMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSK----- 214 (291)
T ss_pred EEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccc-----
Confidence 99999965322 12467888999999999999999999864321110 1122333332110
Q ss_pred eeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC
Q 003446 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450 (819)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~ 450 (819)
T Consensus 215 -------------------------------------------------------------------------------- 214 (291)
T cd07483 215 -------------------------------------------------------------------------------- 214 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeec
Q 003446 451 QTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIG 530 (819)
Q Consensus 451 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (819)
T Consensus 215 -------------------------------------------------------------------------------- 214 (291)
T cd07483 215 -------------------------------------------------------------------------------- 214 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHH
Q 003446 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610 (819)
Q Consensus 531 ~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 610 (819)
......++.||++|+. +|||.|||.+|+++.+ ++.|..++|||||||||||
T Consensus 215 -------~~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG 265 (291)
T cd07483 215 -------KYENNLVANFSNYGKK------------NVDVFAPGERIYSTTP----------DNEYETDSGTSMAAPVVSG 265 (291)
T ss_pred -------cCCcccccccCCCCCC------------ceEEEeCCCCeEeccC----------cCCeEeeccHHHHHHHHHH
Confidence 0001247889999974 3499999999999873 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 611 IAALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 611 ~aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
++|||+|++|+|++.|||++|++||.
T Consensus 266 ~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 266 VAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=390.22 Aligned_cols=288 Identities=37% Similarity=0.512 Sum_probs=217.2
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC---CCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN---TSVDFLSP 230 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~---~~~~~~~~ 230 (819)
|+||+|||||+||+++||+|.+.. +.++++..+++|........... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC----------------------CCCCceeeeeECccCCCCcccccccccccccCCC
Confidence 899999999999999999999651 12345666666654311100000 00011224
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..+|||||||+|+|...+. ..+.||||+|+|+.+|+++..+ +...+++++|+|+++++++|||||||..
T Consensus 59 ~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~ 130 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSS 130 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 568899999999999885431 3467999999999999998554 7888999999999999999999999975
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc--ccCCcceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV--VSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
... ..+.+..+++++.++|+++|+||||+|...... ++..+++|+|||+.....
T Consensus 131 ~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------- 186 (295)
T cd07474 131 VNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------- 186 (295)
T ss_pred CCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-------------------
Confidence 432 236788889999999999999999998765543 566889999998531000
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
........|
T Consensus 187 -----------------------------------------------------------------------~~~~~~~~~ 195 (295)
T cd07474 187 -----------------------------------------------------------------------AEADTVGPS 195 (295)
T ss_pred -----------------------------------------------------------------------CCCCceecc
Confidence 000123334
Q ss_pred ccc-CCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHH
Q 003446 548 SSR-GPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626 (819)
Q Consensus 548 SS~-Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 626 (819)
+++ |+... ..+||||+|||++|++++... ++.|..++|||||||+|||++|||+|++|+|++++
T Consensus 196 ~s~~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~ 260 (295)
T cd07474 196 SSRGPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQ 260 (295)
T ss_pred CCCCCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 444 45443 689999999999999998542 24799999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCccccccccccccCCCCCccccccccccccc
Q 003446 627 IASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRA 673 (819)
Q Consensus 627 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~A 673 (819)
||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 261 v~~~L~~tA~~~~~~~~------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 261 IKAALMNTAKPLYDSDG------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHhhCcccccCCC------------CcCChhccCcceeccccC
Confidence 99999999998765432 122456899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=384.21 Aligned_cols=336 Identities=24% Similarity=0.355 Sum_probs=256.8
Q ss_pred CCCCCcEEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhhccC---------------cccEEEEe
Q 003446 28 FAEERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIG---------------SYNKLYSF 92 (819)
Q Consensus 28 ~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~~~~ 92 (819)
....+++|||.|+..+ ..+.++.+.++++..|..-...+.... ..+..+..
T Consensus 76 ~~~~~~~YiV~f~~~~--------------~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i 141 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDA--------------SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDI 141 (501)
T ss_pred hcccccceEEEeCCCc--------------cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhccccccccc
Confidence 3456789999999554 234455666666666554332211111 13334444
Q ss_pred ee-eeeEEEEEcCHHHHHHHhcCCCceEEEeCccccccc-----cCCCCccCCCc---------ccccccCCCCCCCCCe
Q 003446 93 KY-TVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMT-----SYTPQFLGLPQ---------GVWTQRGGDKNAGEGI 157 (819)
Q Consensus 93 ~~-~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~-----~~~~~~~g~~~---------~~w~~~~~~~~~G~gv 157 (819)
.. +|+|+...++.+.+..++..|-++.++++..++... ......|++.+ ..|...-..-..|+||
T Consensus 142 ~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gv 221 (501)
T KOG1153|consen 142 GGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGV 221 (501)
T ss_pred ccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCe
Confidence 44 788899999999999999999999999998877654 22233455532 1233222223589999
Q ss_pred EEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCCc
Q 003446 158 VIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 237 (819)
..+|+||||+.+||||.++. .|. .| ++ +.....|++|||
T Consensus 222 taYv~DTGVni~H~dFegRa-------~wG-a~-----i~----------------------------~~~~~~D~nGHG 260 (501)
T KOG1153|consen 222 TAYVLDTGVNIEHPDFEGRA-------IWG-AT-----IP----------------------------PKDGDEDCNGHG 260 (501)
T ss_pred EEEEecccccccccccccce-------ecc-cc-----cC----------------------------CCCcccccCCCc
Confidence 99999999999999999981 221 11 00 013346899999
Q ss_pred cccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC---------CCcEEEeCCC
Q 003446 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD---------GVDILTLSIG 307 (819)
Q Consensus 238 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG 307 (819)
|||||+|++.. .|||.+++|+++||+.++| +..+++++++|++++. +..|.|||+|
T Consensus 261 TH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 261 THVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred ceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 99999999984 5999999999999999999 9999999999999987 4579999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
+... -+++.|++.|.+.||++++||||+..+.+ +.|+.+..+|||||++..
T Consensus 327 g~~S--------~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------- 378 (501)
T KOG1153|consen 327 GFRS--------AALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------- 378 (501)
T ss_pred Cccc--------HHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------
Confidence 8643 58999999999999999999999998765 456778899999986311
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
+.++.
T Consensus 379 ---------------------------------------------------------------------------D~iA~ 383 (501)
T KOG1153|consen 379 ---------------------------------------------------------------------------DTIAF 383 (501)
T ss_pred ---------------------------------------------------------------------------cchhh
Confidence 36899
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCC-----
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPS----- 621 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~----- 621 (819)
||+||+++ ||.|||++|+|+|.+.. ..-.++||||||+|||||++|.+++.+|.
T Consensus 384 FSN~G~CV-------------diFAPGv~IlSs~iGs~--------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f 442 (501)
T KOG1153|consen 384 FSNWGKCV-------------DIFAPGVNILSSWIGSN--------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSF 442 (501)
T ss_pred hcCcccee-------------eeecCchhhhhhhhcCc--------cchheeecccccCcchhhhHHHhhhcCCCChHHh
Confidence 99999999 89999999999997543 36689999999999999999999999883
Q ss_pred ----CCHHHHHHHHHhccc
Q 003446 622 ----WTPTMIASAISSTAT 636 (819)
Q Consensus 622 ----~sp~~ik~~L~~TA~ 636 (819)
.+|.++|..+..-..
T Consensus 443 ~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 443 ANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhccCChHHhhhhhhcccc
Confidence 378888877775443
|
|
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=379.34 Aligned_cols=226 Identities=27% Similarity=0.440 Sum_probs=183.9
Q ss_pred eEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 157 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
|+|||||||||.+||+|.++ ++..+++.. ..+.|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~----------------------------~~~~~~~~~--------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV----------------------------VIARLFFAG--------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccC----------------------------ccccccCCC--------------CCCCCCCCC
Confidence 78999999999999999875 111111110 134567899
Q ss_pred ccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC----CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 003446 237 GSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV----GTLADVIAAIDQATMDGVDILTLSIGPDEPP 312 (819)
Q Consensus 237 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 312 (819)
||||||||+|.... ..||||+|+|+.+|++...+ ++..++++||+||++.|++|||||||+..
T Consensus 39 GT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 99999999997531 16999999999999998642 66788999999999999999999999642
Q ss_pred CCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCC
Q 003446 313 RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTC 391 (819)
Q Consensus 313 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 391 (819)
...++.+++++.++|++||+||||+|... ..+|+..+++|+|||++.+
T Consensus 106 ------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------- 154 (239)
T cd05561 106 ------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------- 154 (239)
T ss_pred ------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------
Confidence 25788899999999999999999999753 3456667888888763210
Q ss_pred CCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEE
Q 003446 392 GRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFI 471 (819)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 471 (819)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccC
Q 003446 472 LIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551 (819)
Q Consensus 472 ~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~G 551 (819)
+.++.||++|
T Consensus 155 ----------------------------------------------------------------------~~~~~~s~~g 164 (239)
T cd05561 155 ----------------------------------------------------------------------GRLYREANRG 164 (239)
T ss_pred ----------------------------------------------------------------------CCccccCCCC
Confidence 2456789999
Q ss_pred CCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003446 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAI 631 (819)
Q Consensus 552 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L 631 (819)
+.. ||.|||.+|+++.+ ++.|..++|||||||||||++|||+|++| ++++|||++|
T Consensus 165 ~~~-------------di~ApG~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L 220 (239)
T cd05561 165 AHV-------------DFAAPGVDVWVAAP----------GGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARL 220 (239)
T ss_pred Ccc-------------eEEccccceecccC----------CCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 865 89999999999763 45899999999999999999999999999 9999999999
Q ss_pred HhcccccccCC
Q 003446 632 SSTATKYDNYG 642 (819)
Q Consensus 632 ~~TA~~~~~~g 642 (819)
++||+++...+
T Consensus 221 ~~ta~~~g~~~ 231 (239)
T cd05561 221 AATAKDLGPPG 231 (239)
T ss_pred HHHhhccCCCC
Confidence 99998775443
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=379.87 Aligned_cols=246 Identities=29% Similarity=0.364 Sum_probs=197.4
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC-CCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS-PFDAV 234 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 234 (819)
||+||||||||+++||+|... .+ ..+.++.+.++|.+.. .. ..|.+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~--------~~-------------~~~~~i~~~~~~~~~~------------~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK--------HL-------------FKNLRILGEYDFVDNS------------NNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhh--------cc-------------ccCCceeeeecCccCC------------CCCCCCCC
Confidence 799999999999999999532 00 1234678888887641 22 35788
Q ss_pred CCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC---CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 003446 235 GHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV---GTLADVIAAIDQATMDGVDILTLSIGPDEP 311 (819)
Q Consensus 235 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 311 (819)
+|||||||||+|+.. +.+.||||+|+|+.+|+..... ....+++.|++|+.+.|++|||||||....
T Consensus 48 ~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~ 117 (261)
T cd07493 48 DHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTF 117 (261)
T ss_pred CchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCC
Confidence 999999999999753 2357999999999999876533 345678999999999999999999997654
Q ss_pred CCC--------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC---CCcccCCcceEEEccccccceeeeeEEeCCCeE
Q 003446 312 PRD--------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP---STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLK 380 (819)
Q Consensus 312 ~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~ 380 (819)
... .......+.++++++.++|+++|+||||+|... ...|+..+++|+|||...+
T Consensus 118 ~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~-------------- 183 (261)
T cd07493 118 DNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN-------------- 183 (261)
T ss_pred CCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC--------------
Confidence 311 111234678899999999999999999999863 4456677888888863210
Q ss_pred EeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHH
Q 003446 381 LGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVIN 460 (819)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~ 460 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCC
Q 003446 461 TAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGR 540 (819)
Q Consensus 461 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC
Q 003446 541 APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP 620 (819)
Q Consensus 541 ~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 620 (819)
+.++.||++||+.+ +++||||+|||.+|++.. .++.|..++|||||||||||++|||+|++|
T Consensus 184 -~~~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p 245 (261)
T cd07493 184 -GNKASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHP 245 (261)
T ss_pred -CCCCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCC
Confidence 24678999999886 689999999999999854 245799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccc
Q 003446 621 SWTPTMIASAISSTAT 636 (819)
Q Consensus 621 ~~sp~~ik~~L~~TA~ 636 (819)
+|++.|||++|++||+
T Consensus 246 ~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 246 NWTNLQIKEAILKSAS 261 (261)
T ss_pred CCCHHHHHHHHHHhcC
Confidence 9999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=378.37 Aligned_cols=247 Identities=34% Similarity=0.446 Sum_probs=194.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|||||+||+++||+|.+.... |.. . ++...+.+. +.......|.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~------~~~---~-----------~~~~~~~~~---------d~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG------WGG---G-----------SADHDYNWF---------DPVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc------cCC---C-----------Ccccccccc---------cCCCCCCCCCCC
Confidence 89999999999999999999986111 000 0 000000110 111112456788
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh------------CCCcE
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM------------DGVDI 301 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dV 301 (819)
.+|||||||||+|.... +...||||+|+|+.+|+++..++...+++++++|+++ .|++|
T Consensus 52 ~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~I 122 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDV 122 (264)
T ss_pred CCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeE
Confidence 99999999999987532 1237999999999999999877888899999999975 78999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC---cccCCcceEEEccccccceeeeeEEeCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST---VVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
||||||.... ....+..+++.+.++|++||+||||++..... .|+..+++|+|||++.
T Consensus 123 in~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------- 183 (264)
T cd07481 123 INNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------- 183 (264)
T ss_pred EEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------
Confidence 9999997543 23567778889999999999999999875432 4566778888876321
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
.+.++.||++||... ++.||||+|||.+|+++++ ++.|..++|||||||+|||++|||+|+
T Consensus 184 --~~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~ 244 (264)
T cd07481 184 --NDVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSA 244 (264)
T ss_pred --CCCCccccCCCCCCC-------CCcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 134678999999986 6899999999999999984 357999999999999999999999999
Q ss_pred CCC--CCHHHHHHHHHhccc
Q 003446 619 NPS--WTPTMIASAISSTAT 636 (819)
Q Consensus 619 ~P~--~sp~~ik~~L~~TA~ 636 (819)
+|+ ++++|||++|++||+
T Consensus 245 ~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 245 NPSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCCCHHHHHHHHHHhcC
Confidence 999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-43 Score=380.86 Aligned_cols=220 Identities=30% Similarity=0.331 Sum_probs=165.4
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCC---CHHHHHHHHHHHHhCCCcEEEeCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVG---TLADVIAAIDQATMDGVDILTLSIG 307 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~i~~ai~~a~~~g~dVIn~SlG 307 (819)
.|+++|||||||||||+..++ ..+.||||+|+|+++|+++...+ ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 367899999999999985321 34689999999999999875432 2356899999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHH-HHHhCCcEEEEeCCCCCCCCCCc--cc-CCcceEEEccccccceeeeeEEeCCCeEEee
Q 003446 308 PDEPPRDTITMLGIFDVLML-FARRAGVFVVQAAGNQGPAPSTV--VS-YSPWAVAAAACTTDRIYPGSLLLGNGLKLGG 383 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~ 383 (819)
........ ..+.+++. .+.++||++|+||||+|+...++ |+ ..+++|+|||+.......
T Consensus 254 ~~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~------------- 316 (412)
T cd04857 254 EATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMA------------- 316 (412)
T ss_pred cCCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccc-------------
Confidence 86543211 12333343 44578999999999999876654 32 468999999864221000
Q ss_pred ecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHH
Q 003446 384 VGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAI 463 (819)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~ 463 (819)
..|.+
T Consensus 317 ------------~~y~~--------------------------------------------------------------- 321 (412)
T cd04857 317 ------------AEYSL--------------------------------------------------------------- 321 (412)
T ss_pred ------------ccccc---------------------------------------------------------------
Confidence 00000
Q ss_pred hcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCe
Q 003446 464 TLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPI 543 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
.....+.
T Consensus 322 -------------------------------------------------------------------------~~~~~~~ 328 (412)
T cd04857 322 -------------------------------------------------------------------------REKLPGN 328 (412)
T ss_pred -------------------------------------------------------------------------ccccCCc
Confidence 0001245
Q ss_pred eecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hC
Q 003446 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HN 619 (819)
Q Consensus 544 ~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~ 619 (819)
++.||||||+.+ +.+||||+|||+.|.|+-. . ....|..|+|||||||||||++|||++ .+
T Consensus 329 ~~~fSSrGP~~d-------G~~~pdI~APG~~I~s~p~-~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~ 393 (412)
T cd04857 329 QYTWSSRGPTAD-------GALGVSISAPGGAIASVPN-W-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEG 393 (412)
T ss_pred cccccccCCccc-------CCcCceEEeCCCcEEEccc-C-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcC
Confidence 899999999997 7999999999999988521 1 234789999999999999999999985 47
Q ss_pred CCCCHHHHHHHHHhccccc
Q 003446 620 PSWTPTMIASAISSTATKY 638 (819)
Q Consensus 620 P~~sp~~ik~~L~~TA~~~ 638 (819)
|+|+|.+||++|++||+++
T Consensus 394 ~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 394 IPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCHHHHHHHHHHhCccC
Confidence 8999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=369.83 Aligned_cols=257 Identities=35% Similarity=0.495 Sum_probs=203.4
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
|+||+|+|||+||+++||+|.+.... . +.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----~-----------------------~~~~~~---------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----F-----------------------ADFVNT---------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----c-----------------------cccccc---------ccCCCCCCCC
Confidence 89999999999999999999986110 0 000000 0112445677
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC----CCcEEEeCCCC
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD----GVDILTLSIGP 308 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~ 308 (819)
.+|||||||+|+|..... .+.+.||||+|+|+.+|+++..+ +..+++++||+|+++. +++|||||||.
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~ 116 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGA 116 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCC
Confidence 899999999999985421 13468999999999999999876 7788999999999998 99999999998
Q ss_pred CCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 309 DEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 309 ~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
.... ....+.+.++++++.++|++||+||||++.... ..|+..+++|+|||+..+..
T Consensus 117 ~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 117 PPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred CCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 6542 234578889999999999999999999998765 45667889999997532210
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
....++.
T Consensus 176 -------------------------------------------------------------------------~~~~~~~ 182 (264)
T cd07487 176 -------------------------------------------------------------------------HDDGISY 182 (264)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 0013678
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHH
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTM 626 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ 626 (819)
||++||+.+ +++||||+|||++|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+
T Consensus 183 ~s~~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 254 (264)
T cd07487 183 FSSRGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDE 254 (264)
T ss_pred cccCCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHH
Confidence 999999986 699999999999999986543111 112345899999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 003446 627 IASAISSTAT 636 (819)
Q Consensus 627 ik~~L~~TA~ 636 (819)
||++|++||+
T Consensus 255 ik~~L~~tA~ 264 (264)
T cd07487 255 VKCILRDTAT 264 (264)
T ss_pred HHHHHHhhcC
Confidence 9999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=369.15 Aligned_cols=162 Identities=24% Similarity=0.295 Sum_probs=123.3
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
.+++.+ +|+. +++|+||+||||||||+..|| |... .+.+ ++ .+..+
T Consensus 7 ~l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~--------~~~~---------------~~----~~~~~- 52 (298)
T cd07494 7 LLNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESR--------GYQV---------------RV----VLAPG- 52 (298)
T ss_pred hcChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcC--------Cccc---------------ee----ecCCC-
Confidence 456555 7876 899999999999999999998 6654 1110 00 00000
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT 295 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~ 295 (819)
......|++||||||||++ .||||+|+|+.+|++++ ..+++++||+||+
T Consensus 53 ----------~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ----------ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAI 101 (298)
T ss_pred ----------CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHH
Confidence 1133567889999999864 48999999999999875 4567899999999
Q ss_pred hCCCcEEEeCCCCCCCCCC------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccc
Q 003446 296 MDGVDILTLSIGPDEPPRD------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTT 365 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~ 365 (819)
+++++|||||||.....+. .....+.+++++++|.++|++||+||||++. .+|+..|++|+|||+..
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 9999999999998643221 0112456889999999999999999999974 46888999999998643
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=365.43 Aligned_cols=260 Identities=29% Similarity=0.334 Sum_probs=197.4
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCC-C-CCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccc
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANY-N-PFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVAT 220 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~ 220 (819)
+|.. +++|+||+|+|||||||++||+|.+. . ..+.+ ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 6777 89999999999999999999999986 1 11110 000000000
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCC
Q 003446 221 LNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGV 299 (819)
Q Consensus 221 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 299 (819)
+.........|..+|||||||||+|+........|.. ...|+||+|+|+.+|++...+ ...++++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0000113445678999999999999754322111111 235799999999999999865 677889999999999999
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhC-------CcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeee
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRA-------GVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGS 372 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~ 372 (819)
+|||||||.... ..+...+..+++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997542 12345677888888888 9999999999998776667778889999864210
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccc
Q 003446 453 STLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEG 532 (819)
Q Consensus 453 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (819)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCC-eEEEeecCCCCCCCCcCCCcceecccccchhhHHHHH
Q 003446 533 RVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGH-QIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611 (819)
Q Consensus 533 ~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 611 (819)
+.++.||++|+.. ||+|||. .|+++++.... ...+.|..++|||||||+|||+
T Consensus 196 ---------~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~ 249 (273)
T cd07485 196 ---------DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGV 249 (273)
T ss_pred ---------CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHH
Confidence 2456899999876 8999999 99988764321 1234799999999999999999
Q ss_pred HHHHHHhCCC-CCHHHHHHHHHhc
Q 003446 612 AALIKQHNPS-WTPTMIASAISST 634 (819)
Q Consensus 612 aALl~q~~P~-~sp~~ik~~L~~T 634 (819)
+|||+|++|. |+|+|||++|++|
T Consensus 250 aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 250 AALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=373.05 Aligned_cols=261 Identities=25% Similarity=0.245 Sum_probs=187.2
Q ss_pred EEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCCc
Q 003446 158 VIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 237 (819)
+|||||||||.+||+|.+.. .....+... + ..+.|.+|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~----------------------------~~~~~~~~~-----------~-~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL----------------------------AEDDLDSDE-----------P-GWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh----------------------------ccccccccC-----------C-CCcCCCCCCh
Confidence 79999999999999999761 101111100 0 1156889999
Q ss_pred cccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-----CCHHHHHHHHHHHHhCC---CcEEEeCCCCC
Q 003446 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-----GTLADVIAAIDQATMDG---VDILTLSIGPD 309 (819)
Q Consensus 238 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 309 (819)
|||||||++.... .....|+||+|+|+.+|++...| ...+++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 9999999875421 12357999999999999999864 45678999999999853 48999999986
Q ss_pred CCCCCccccccHHHHHHH-HHHhCCcEEEEeCCCCCCCCCC------------cccCCcceEEEccccccceeeeeEEeC
Q 003446 310 EPPRDTITMLGIFDVLML-FARRAGVFVVQAAGNQGPAPST------------VVSYSPWAVAAAACTTDRIYPGSLLLG 376 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgAs~~~~~~~~~~~~~ 376 (819)
...... ....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.....
T Consensus 114 ~~~~~~--~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~----- 186 (291)
T cd04847 114 LPIDDG--RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITD----- 186 (291)
T ss_pred CCccCC--CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCC-----
Confidence 543211 1124455554 4568999999999999987543 2456789999998754321000
Q ss_pred CCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchH
Q 003446 377 NGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLT 456 (819)
Q Consensus 377 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~ 456 (819)
| . . . +
T Consensus 187 ---------------------~-------------------------s----~--------------~------~----- 191 (291)
T cd04847 187 ---------------------R-------------------------A----R--------------Y------S----- 191 (291)
T ss_pred ---------------------c-------------------------c----c--------------c------c-----
Confidence 0 0 0 0 0
Q ss_pred HHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeee
Q 003446 457 AVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVAS 536 (819)
Q Consensus 457 ~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (819)
T Consensus 192 -------------------------------------------------------------------------------- 191 (291)
T cd04847 192 -------------------------------------------------------------------------------- 191 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC--------CCCcCCCcceecccccchhhHH
Q 003446 537 FEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL--------DPMLTGCNFALLSGTSMATPHI 608 (819)
Q Consensus 537 ~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~V 608 (819)
.......+.||||||... +.+||||+|||++|.+..+..... .....++.|..++|||||||||
T Consensus 192 -~~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~V 263 (291)
T cd04847 192 -AVGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLA 263 (291)
T ss_pred -ccccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHH
Confidence 000011334999999986 799999999999998865321100 0011345899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 609 AGIAALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 609 AG~aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
||++|||+|++|+++|++||++|++||+
T Consensus 264 ag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 264 ARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=368.88 Aligned_cols=263 Identities=31% Similarity=0.366 Sum_probs=192.0
Q ss_pred CeEEEEecceeccCCCCCCCCC-CCCCCCCC----CCCccc-cCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYN-PFEPNISH----FSGDCE-TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~-~~~~~~~~----~~~~~~-~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
||+|||||||||++||+|.++. .++..+.. .++.-. .....+..+.+++.. .........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~ 66 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDV--------------PPGGFCGSG 66 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCCCCCCcccccccccc--------------cccccccCC
Confidence 7999999999999999999872 22221110 000000 000000011111100 000111234
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH----------hCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT----------MDGV 299 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~----------~~g~ 299 (819)
..+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..++..+++++|++|++ .+++
T Consensus 67 ~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 67 VSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 4567899999999999975421 235799999999999999987788899999999998 4578
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
+|||||||..... ...+..+++.+.++|++||+||||++... ...|+..+++|+|||++.+
T Consensus 139 ~Iin~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 200 (285)
T cd07496 139 KVINLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------ 200 (285)
T ss_pred eEEEeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC------------
Confidence 9999999975431 35788899999999999999999999876 5567778889999874211
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC-----CCCcCCCcceecccccchhhHHHHHHH
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL-----DPMLTGCNFALLSGTSMATPHIAGIAA 613 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aA 613 (819)
+.++.||++|+.. ||+|||++|.++....... ........|..++|||||||+|||++|
T Consensus 201 ---~~~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aA 264 (285)
T cd07496 201 ---GQRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAA 264 (285)
T ss_pred ---CCcccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHH
Confidence 2467899999976 8999999999887543210 111234578999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhc
Q 003446 614 LIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 614 Ll~q~~P~~sp~~ik~~L~~T 634 (819)
||+|++|+|++++||++|++|
T Consensus 265 lv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 265 LMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=359.72 Aligned_cols=228 Identities=33% Similarity=0.482 Sum_probs=191.9
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||+||+++||+|.++ +...+++... ...
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~----------------------------~~~~~~~~~~-------------~~~ 59 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGR----------------------------AIWGADFVGG-------------DPD 59 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCC----------------------------eeeeeecCCC-------------CCC
Confidence 69999999999999999999999875 2223333321 225
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCC-----CcEEEe
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDG-----VDILTL 304 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-----~dVIn~ 304 (819)
.|..+|||||||||+++. .||||+|+|+.+|+++..+ +..++++++++|++++. ++||||
T Consensus 60 ~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~ 125 (255)
T cd04077 60 SDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANM 125 (255)
T ss_pred CCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEe
Confidence 678899999999999863 5999999999999999876 77889999999999874 899999
Q ss_pred CCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEEccccccceeeeeEEeCCCeEEee
Q 003446 305 SIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGG 383 (819)
Q Consensus 305 SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~ 383 (819)
|||... ...+..+++++.++|+++|+||||+|... ...|+..+++|+|||++.+
T Consensus 126 S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~----------------- 180 (255)
T cd04077 126 SLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD----------------- 180 (255)
T ss_pred CCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-----------------
Confidence 999753 25788889999999999999999999765 3556678899999874211
Q ss_pred ecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHH
Q 003446 384 VGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAI 463 (819)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~ 463 (819)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCe
Q 003446 464 TLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPI 543 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
+.
T Consensus 181 ------------------------------------------------------------------------------~~ 182 (255)
T cd04077 181 ------------------------------------------------------------------------------DA 182 (255)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 23
Q ss_pred eecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCC
Q 003446 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWT 623 (819)
Q Consensus 544 ~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s 623 (819)
++.||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++
T Consensus 183 ~~~~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~ 241 (255)
T cd04077 183 RASFSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLS 241 (255)
T ss_pred ccCcccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCC
Confidence 57789999876 899999999998753 134899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccc
Q 003446 624 PTMIASAISSTATK 637 (819)
Q Consensus 624 p~~ik~~L~~TA~~ 637 (819)
+++||++|++||++
T Consensus 242 ~~~v~~~L~~tA~~ 255 (255)
T cd04077 242 PAEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHHhhccC
Confidence 99999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=360.02 Aligned_cols=246 Identities=34% Similarity=0.501 Sum_probs=202.3
Q ss_pred CCccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEccc
Q 003446 134 PQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213 (819)
Q Consensus 134 ~~~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~ 213 (819)
...++.+. +|.. + +|+||+|+|||+||+++||+|... ++...+++.+
T Consensus 13 ~~~~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~---------------------------~~~~~~~~~~ 59 (260)
T cd07484 13 LDQIGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKV---------------------------KFVLGYDFVD 59 (260)
T ss_pred ccccChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccC---------------------------CcccceeccC
Confidence 34455554 8887 3 999999999999999999998543 2223333332
Q ss_pred chhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHH
Q 003446 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAID 292 (819)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~ 292 (819)
. ...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...+++++|+
T Consensus 60 ~------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~ 119 (260)
T cd07484 60 N------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIR 119 (260)
T ss_pred C------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHH
Confidence 1 1335678899999999999875322 2357999999999999998866 77889999999
Q ss_pred HHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeee
Q 003446 293 QATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGS 372 (819)
Q Consensus 293 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~ 372 (819)
++++.|++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+.+.+
T Consensus 120 ~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------ 186 (260)
T cd07484 120 YAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------ 186 (260)
T ss_pred HHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------
Confidence 999999999999999753 3367888999999999999999999999887888888999999864211
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccc
Q 003446 453 STLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEG 532 (819)
Q Consensus 453 ~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHH
Q 003446 533 RVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIA 612 (819)
Q Consensus 533 ~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 612 (819)
+.++.||++|+.. |+.|||.+|+++.+ .+.|..++|||||||+|||++
T Consensus 187 ---------~~~~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~ 234 (260)
T cd07484 187 ---------DKRASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVA 234 (260)
T ss_pred ---------CCcCCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHH
Confidence 2356788999765 89999999999874 347999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhccccc
Q 003446 613 ALIKQHNPSWTPTMIASAISSTATKY 638 (819)
Q Consensus 613 ALl~q~~P~~sp~~ik~~L~~TA~~~ 638 (819)
|||+|++| |++.+||++|++||+++
T Consensus 235 Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 235 ALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999 99999999999999865
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=358.27 Aligned_cols=253 Identities=28% Similarity=0.418 Sum_probs=189.3
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||+|||++||+|.+.. ....+|... ...+.....|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~~~--------~~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV----------------------------AQWADFDEN--------RRISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc----------------------------CCceeccCC--------CCCCCCCCCCCCC
Confidence 7999999999999999998751 111112110 0011234557789
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCc
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDT 315 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 315 (819)
|||||||||+|+... +...||||+|+|+.+|++...++..++++++|+|+++.+++|||||||.....
T Consensus 45 HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--- 112 (254)
T cd07490 45 HGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--- 112 (254)
T ss_pred cHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---
Confidence 999999999998541 23579999999999999988777889999999999999999999999976432
Q ss_pred cccccHHHHHHHHHHh-CCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCCCC
Q 003446 316 ITMLGIFDVLMLFARR-AGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRP 394 (819)
Q Consensus 316 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 394 (819)
.+.+..+++.+.+ +|++||+||||+|......|+..+++|+|||++.+.....
T Consensus 113 ---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------- 166 (254)
T cd07490 113 ---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW----------------------- 166 (254)
T ss_pred ---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------
Confidence 3456666666655 6999999999999887777888999999998654321000
Q ss_pred CceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEe
Q 003446 395 LFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIA 474 (819)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 474 (819)
...+
T Consensus 167 --------------------------~s~~-------------------------------------------------- 170 (254)
T cd07490 167 --------------------------FSSF-------------------------------------------------- 170 (254)
T ss_pred --------------------------ccCC--------------------------------------------------
Confidence 0000
Q ss_pred cCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 475 NSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 475 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
........+.+|..
T Consensus 171 ------------------------------------------------------------------g~~~~~~~~~~~~~ 184 (254)
T cd07490 171 ------------------------------------------------------------------GSSGASLVSAPDSP 184 (254)
T ss_pred ------------------------------------------------------------------cccccccccCCCCC
Confidence 00011122333333
Q ss_pred CCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003446 555 TDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 555 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 634 (819)
.. ...||||.|||.+|+++..... .++.|..++|||||||+|||++|||+|++|+|++.+||++|++|
T Consensus 185 ~~------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~t 252 (254)
T cd07490 185 PD------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTET 252 (254)
T ss_pred cc------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 21 4689999999999999653211 34589999999999999999999999999999999999999999
Q ss_pred cc
Q 003446 635 AT 636 (819)
Q Consensus 635 A~ 636 (819)
|+
T Consensus 253 A~ 254 (254)
T cd07490 253 AY 254 (254)
T ss_pred cC
Confidence 84
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=358.47 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=106.3
Q ss_pred CCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhh
Q 003446 138 GLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQA 217 (819)
Q Consensus 138 g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~ 217 (819)
++++ +|+.. +..|+||+|+|||+|||.+||||.++.- . ..
T Consensus 3 ~~~~-aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~-----~--------------------------~~----- 42 (277)
T cd04843 3 NARY-AWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGI-----T--------------------------LI----- 42 (277)
T ss_pred ChHH-HHHhc---CCCCCcEEEEEecCCCCCCChhhccccc-----c--------------------------cc-----
Confidence 4444 78874 2458999999999999999999997610 0 00
Q ss_pred ccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh-
Q 003446 218 VATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM- 296 (819)
Q Consensus 218 ~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~- 296 (819)
....+.|+++|||||||||+|..+ + ..+.||||+|+|+.+|+++ .++++++|+||++
T Consensus 43 --------~~~~~~d~~gHGT~VAGiIaa~~n------~---~G~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~ 100 (277)
T cd04843 43 --------SGLTDQADSDHGTAVLGIIVAKDN------G---IGVTGIAHGAQAAVVSSTR-----VSNTADAILDAADY 100 (277)
T ss_pred --------CCCCCCCCCCCcchhheeeeeecC------C---CceeeeccCCEEEEEEecC-----CCCHHHHHHHHHhc
Confidence 001145778999999999998642 1 1257999999999999986 2345666666666
Q ss_pred ---CCCcEEEeCCCCCCCCCC--ccccccHHHHHHHHHHhCCcEEEEeCCCCCCC
Q 003446 297 ---DGVDILTLSIGPDEPPRD--TITMLGIFDVLMLFARRAGVFVVQAAGNQGPA 346 (819)
Q Consensus 297 ---~g~dVIn~SlG~~~~~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~ 346 (819)
.++.+||||||....... .....+.+..++++|.++|+++|+||||++..
T Consensus 101 ~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~ 155 (277)
T cd04843 101 LSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQD 155 (277)
T ss_pred cCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCcc
Confidence 345679999998642210 01234566778999999999999999999874
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.39 Aligned_cols=277 Identities=26% Similarity=0.293 Sum_probs=201.4
Q ss_pred CCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 150 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
.+++|+||+|||||||||++||+|.+.... ...+.++++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~-----------------~~~~~~~~~~~~~~~~~---------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN-----------------KTNLFHRKIVRYDSLSD---------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC-----------------cCccCcccEEEeeccCC---------------C
Confidence 379999999999999999999999875110 01122344544443332 1
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVDILTLSIG 307 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 307 (819)
..|..+|||||||||+|....... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G 124 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWG 124 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCC
Confidence 227899999999999998643210 11468999999999999998765 55667899999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHH-h-CCcEEEEeCCCCCCCCC---CcccCCcceEEEccccccceeeeeEEeCCCeEEe
Q 003446 308 PDEPPRDTITMLGIFDVLMLFAR-R-AGVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG 382 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~ 382 (819)
..... .......++.++. + +|++||+||||+|.... ..|+..+++|+|||++......
T Consensus 125 ~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------ 187 (293)
T cd04842 125 SPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------ 187 (293)
T ss_pred CCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------
Confidence 86431 1133444444443 3 79999999999998765 5677889999999875432100
Q ss_pred eecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHH
Q 003446 383 GVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTA 462 (819)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~ 462 (819)
...|..
T Consensus 188 --------------------------------------~~~~~~------------------------------------ 193 (293)
T cd04842 188 --------------------------------------GEGGLG------------------------------------ 193 (293)
T ss_pred --------------------------------------cccccc------------------------------------
Confidence 000000
Q ss_pred HhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCC
Q 003446 463 ITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542 (819)
Q Consensus 463 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
.....+
T Consensus 194 --------------------------------------------------------------------------~~~~~~ 199 (293)
T cd04842 194 --------------------------------------------------------------------------QSDNSD 199 (293)
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 001124
Q ss_pred eeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhC---
Q 003446 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHN--- 619 (819)
Q Consensus 543 ~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~--- 619 (819)
.++.||++||+.. +++||||+|||++|+++...... ........|...+|||||||||||++|||+|++
T Consensus 200 ~~~~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~ 271 (293)
T cd04842 200 TVASFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGGG-IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDG 271 (293)
T ss_pred ccccccCcCCCCC-------CCcCCCEECCCCCeEeccCCCCC-CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999986 69999999999999999754210 011134579999999999999999999999985
Q ss_pred --C---CCCHHHHHHHHHhccc
Q 003446 620 --P---SWTPTMIASAISSTAT 636 (819)
Q Consensus 620 --P---~~sp~~ik~~L~~TA~ 636 (819)
| .+++.++|++|++||+
T Consensus 272 ~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 272 YYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCCCcCcCHHHHHHHHHhcCC
Confidence 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=360.19 Aligned_cols=147 Identities=30% Similarity=0.476 Sum_probs=110.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||+|||.+||+|.+.. +..++|.+. ..+
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~----------------------------~~~~~~~~~-------------~~~ 42 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRD----------------------------ITTKSFVGG-------------EDV 42 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCc----------------------------ccCcccCCC-------------CCC
Confidence 699999999999999999999999761 111122211 224
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|.++|||||||||+|+... +...||||+|+|+.+|++...+ +...++++||+||++.|++|||||||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 67899999999999997542 2246999999999999998755 6777899999999999999999999985
Q ss_pred CC------CCCccccccHHHHHHHHH---------------HhCCcEEEEeCCCCCCCC
Q 003446 310 EP------PRDTITMLGIFDVLMLFA---------------RRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 310 ~~------~~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 347 (819)
.. +.........++.+.+.+ .++|++||+||||++...
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 114 FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 41 111111223344444444 789999999999998643
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=350.43 Aligned_cols=240 Identities=28% Similarity=0.414 Sum_probs=190.2
Q ss_pred eEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 157 IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 157 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
|+|||||+||+++||+|.+. .+ +...+++.. +...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~---~~-----------------------~~~~~~~~~------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK---PK-----------------------LVPGWNFVS------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccC---cC-----------------------ccCCccccC------------CCCCCCCCCCC
Confidence 68999999999999999974 00 111111111 11234678999
Q ss_pred ccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCc
Q 003446 237 GSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRDT 315 (819)
Q Consensus 237 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 315 (819)
||||||||+|+..+. ..+.||||+|+|+.+|++...+ +..+++.++++|+++.+++|||||||.....
T Consensus 43 GT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--- 111 (242)
T cd07498 43 GTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST--- 111 (242)
T ss_pred HHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC---
Confidence 999999999975321 2357999999999999998765 6788899999999999999999999976432
Q ss_pred cccccHHHHHHHHHHh-CCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCCCC
Q 003446 316 ITMLGIFDVLMLFARR-AGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRP 394 (819)
Q Consensus 316 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 394 (819)
..+...++.+++.+.+ +|+++|+||||+|......++..+++|+|||++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------- 163 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------- 163 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------
Confidence 2345678888889988 99999999999998776677888999999974211
Q ss_pred CceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEe
Q 003446 395 LFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIA 474 (819)
Q Consensus 395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 474 (819)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 475 NSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 475 ~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
+.++.||+|||..
T Consensus 164 -------------------------------------------------------------------~~~~~~s~~g~~~ 176 (242)
T cd07498 164 -------------------------------------------------------------------DARASYSNYGNYV 176 (242)
T ss_pred -------------------------------------------------------------------CCccCcCCCCCCe
Confidence 2357889999876
Q ss_pred CCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 003446 555 TDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISST 634 (819)
Q Consensus 555 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 634 (819)
|++|||+++.+....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 -------------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 -------------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred -------------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999887543211 111235678999999999999999999999999999999999999975
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=348.72 Aligned_cols=249 Identities=31% Similarity=0.374 Sum_probs=188.2
Q ss_pred CCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCc---cccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCC
Q 003446 155 EGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD---CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPF 231 (819)
Q Consensus 155 ~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~---~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 231 (819)
+||+|||||||||++||+|.++ .|... +..+.+......-++ ...++|. .+..++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN--------MWVNPGEIPGNGIDDDGNGYVDD-IYGWNFV------------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc--------cccCcccccccCcccCCCCcccC-CCccccc------------CCCCCCC
Confidence 6899999999999999999987 23211 111111000000000 1111111 1224567
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
|..+|||||||||+|..... ..+.||||+|+|+.+|++...+ +...+++++++|+++.+++|||+|||...
T Consensus 61 d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~ 132 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGG 132 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 88999999999999975422 2357999999999999999877 78889999999999999999999999753
Q ss_pred CCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC---Cccc--CCcceEEEccccccceeeeeEEeCCCeEEeeec
Q 003446 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS---TVVS--YSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVG 385 (819)
Q Consensus 311 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~--~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~ 385 (819)
. ...+..+++++.++|++||+||||+|.... .++. ..+++|+||+.+.
T Consensus 133 ~-------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------------- 185 (259)
T cd07473 133 P-------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------------- 185 (259)
T ss_pred C-------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------------
Confidence 2 367888889999999999999999987532 2232 2356666665311
Q ss_pred CCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhc
Q 003446 386 LSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITL 465 (819)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~ 465 (819)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeee
Q 003446 466 GFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVS 545 (819)
Q Consensus 466 Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 545 (819)
.+.++
T Consensus 186 ---------------------------------------------------------------------------~~~~~ 190 (259)
T cd07473 186 ---------------------------------------------------------------------------NDALA 190 (259)
T ss_pred ---------------------------------------------------------------------------CCCcC
Confidence 12456
Q ss_pred cccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHH
Q 003446 546 RFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625 (819)
Q Consensus 546 ~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~ 625 (819)
.||++||.. ||+.|||.++++.. .++.|..++|||||||+|||++|||+|++|.++++
T Consensus 191 ~~s~~g~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~ 248 (259)
T cd07473 191 SFSNYGKKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAA 248 (259)
T ss_pred cccCCCCCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHH
Confidence 689999753 49999999999965 34589999999999999999999999999999999
Q ss_pred HHHHHHHhccc
Q 003446 626 MIASAISSTAT 636 (819)
Q Consensus 626 ~ik~~L~~TA~ 636 (819)
+||++|++||+
T Consensus 249 ~v~~~L~~tA~ 259 (259)
T cd07473 249 QIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHhCC
Confidence 99999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=340.95 Aligned_cols=226 Identities=35% Similarity=0.519 Sum_probs=185.8
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||+||+++||+|.+. +...++|... ....+.|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~----------------------------~~~~~~~~~~-----------~~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN----------------------------IVGGANFTGD-----------DNNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc----------------------------ccCcccccCC-----------CCCCCCCCCC
Confidence 799999999999999999875 1112222211 0024457789
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCC
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 314 (819)
|||||||+|++.... ..+.|+||+|+|+.+|+++..+ +...+++++++|+++.|++|||||||....
T Consensus 42 HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~~--- 109 (229)
T cd07477 42 HGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSD--- 109 (229)
T ss_pred CHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCCC---
Confidence 999999999997532 1357999999999999999876 677899999999999999999999997532
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc--ccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCC
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV--VSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCG 392 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 392 (819)
...+..+++.+.++|+++|+||||++...... |+..+++|+||+++.+
T Consensus 110 ----~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------- 159 (229)
T cd07477 110 ----SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------- 159 (229)
T ss_pred ----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------
Confidence 25677888899999999999999999876654 7778899999874311
Q ss_pred CCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEE
Q 003446 393 RPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFIL 472 (819)
Q Consensus 393 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 472 (819)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCC
Q 003446 473 IANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGP 552 (819)
Q Consensus 473 ~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp 552 (819)
+.++.||++|+
T Consensus 160 ---------------------------------------------------------------------~~~~~~s~~g~ 170 (229)
T cd07477 160 ---------------------------------------------------------------------NNRASFSSTGP 170 (229)
T ss_pred ---------------------------------------------------------------------CCcCCccCCCC
Confidence 23557899998
Q ss_pred CCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003446 553 DFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAIS 632 (819)
Q Consensus 553 ~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~ 632 (819)
.. |+.|||.+|+++++ .+.|..++|||||||+|||++|||+|++|+++|.+||++|+
T Consensus 171 ~~-------------~~~apg~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~ 227 (229)
T cd07477 171 EV-------------ELAAPGVDILSTYP----------NNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALN 227 (229)
T ss_pred Cc-------------eEEeCCCCeEEecC----------CCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 65 89999999999874 35789999999999999999999999999999999999999
Q ss_pred hc
Q 003446 633 ST 634 (819)
Q Consensus 633 ~T 634 (819)
+|
T Consensus 228 ~t 229 (229)
T cd07477 228 KT 229 (229)
T ss_pred hC
Confidence 76
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=344.35 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=118.3
Q ss_pred CCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCC
Q 003446 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDA 233 (819)
Q Consensus 154 G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 233 (819)
+++|+|||||||||++||+|.++ +..+++|.... .+.........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~----------------------------i~~~~~~~~~~-----~~~~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK----------------------------IIGGKSFSPYE-----GDGNKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc----------------------------cccCCCCCCCC-----CCcccCCCCCCCC
Confidence 78999999999999999999976 11111121110 0000011223468
Q ss_pred CCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-------CCHHHHHHHHHHHHhCCCcEEEeCC
Q 003446 234 VGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-------GTLADVIAAIDQATMDGVDILTLSI 306 (819)
Q Consensus 234 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIn~Sl 306 (819)
+||||||||||+ |+||+|+|+.+|+++..+ +....+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999984 689999999999998744 3567899999999999999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-Cc--ccCCcceEEEccc
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TV--VSYSPWAVAAAAC 363 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~--~~~~p~vitVgAs 363 (819)
|....... ......++.++++|.++|++||+||||+|.... .+ ++..|++|+|||+
T Consensus 111 g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 111 TIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred eccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 97543210 123468899999999999999999999998764 32 4557889999874
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=350.76 Aligned_cols=153 Identities=27% Similarity=0.407 Sum_probs=110.0
Q ss_pred CeEEEEecceeccCCCCCCCCCC-CCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNP-FEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAV 234 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~-~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 234 (819)
.|+|||||||||++||+|.+... ....+ ... ..+... ......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~-------~~~---------------~~~~~~-----~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL-------VPK---------------GGYDGK-----EAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc-------ccC---------------CCcCCc-----cccccCCCCcCCCCC
Confidence 38999999999999999997511 10000 000 000000 000011123456789
Q ss_pred CCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC
Q 003446 235 GHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPR 313 (819)
Q Consensus 235 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 313 (819)
||||||||+|+|+.. ..||||+|+|+.+|+++..+ ....+++++|+||++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999998742 35999999999999998876 48889999999999999999999999754332
Q ss_pred Cc----cccccHHHHHHHHHHhCCcEEEEeCCCCCCCC
Q 003446 314 DT----ITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 314 ~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 347 (819)
.. ....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 12235677888889999999999999999753
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=353.37 Aligned_cols=276 Identities=32% Similarity=0.488 Sum_probs=208.8
Q ss_pred EEEEecceeccCCCCCC-CCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCC
Q 003446 158 VIGFVDTGINPSHPSFA-NYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 236 (819)
+|||||||||++||+|. ++. ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------------------EEEEEEEEEETTTTB---------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCCc-----------------------ccccccceeeccCCC---------CCcCccccCCCc
Confidence 69999999999999999 540 012344566666541 112445678899
Q ss_pred ccccccccccCC-CcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH-hCCCcEEEeCCCCCCCCCC
Q 003446 237 GSHVASTAAGNA-GVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT-MDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 237 GThVAGiiag~~-~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~~~~~ 314 (819)
||||||+|+|.. ..+ ..+.|+||+|+|+.+|++...+....++++++++++ +.+++|||||||..... .
T Consensus 49 GT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~-~ 119 (282)
T PF00082_consen 49 GTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP-P 119 (282)
T ss_dssp HHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESS-S
T ss_pred cchhhhhccccccccc--------cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccc-c
Confidence 999999999985 211 235899999999999998877677888999999999 89999999999873211 1
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC---cccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCC
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST---VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTC 391 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 391 (819)
.....+.+..+++.+.++|+++|+||||+|..... .|...+++|+||++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------- 174 (282)
T PF00082_consen 120 DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------- 174 (282)
T ss_dssp HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------------
T ss_pred ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc-------------------------
Confidence 11234556778889999999999999999876543 44555777777753210
Q ss_pred CCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEE
Q 003446 392 GRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFI 471 (819)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 471 (819)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccC
Q 003446 472 LIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551 (819)
Q Consensus 472 ~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~G 551 (819)
+.++.||++|
T Consensus 175 ----------------------------------------------------------------------~~~~~~s~~g 184 (282)
T PF00082_consen 175 ----------------------------------------------------------------------GQPASYSNYG 184 (282)
T ss_dssp ----------------------------------------------------------------------SSBSTTSSBS
T ss_pred ----------------------------------------------------------------------cccccccccc
Confidence 2357889997
Q ss_pred CCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003446 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAI 631 (819)
Q Consensus 552 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L 631 (819)
+... .+++||||+|||.+|+++++... ...|..++|||||||+|||++|||+|++|+|++.+||.+|
T Consensus 185 ~~~~------~~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l 251 (282)
T PF00082_consen 185 GPSD------DGRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALL 251 (282)
T ss_dssp TTET------TCTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred cccc------ccccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 6653 26899999999999999885321 1358899999999999999999999999999999999999
Q ss_pred HhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 632 SSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 632 ~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++||.++...+ .......||+|+||+.+|++
T Consensus 252 ~~ta~~~~~~~-------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 252 INTADDLGSTN-------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHSBESSETT-------------SSSSHHHHTTSBE-HHHHHH
T ss_pred HHhCcccCcCC-------------CCCCCCCccCChhCHHHHhC
Confidence 99999886221 12345678999999999974
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=347.10 Aligned_cols=171 Identities=21% Similarity=0.236 Sum_probs=113.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|+|||||||++||+|.++... ...++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~--------------------------~~~~~~~~~-------- 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP--------------------------EASYDFNDN-------- 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc--------------------------cccccccCC--------
Confidence 7776 79999999999999999999999976110 011112111
Q ss_pred CCCCCCCC--CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCc
Q 003446 223 TSVDFLSP--FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVD 300 (819)
Q Consensus 223 ~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~d 300 (819)
.....+ .|..+|||||||||+|+.... ....||||+|+|+.+|+++.. .....+..++.++.+ .++
T Consensus 73 --~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~ 140 (297)
T cd04059 73 --DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YID 140 (297)
T ss_pred --CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-cccHHHHHHHhcccC-Cce
Confidence 000122 277899999999999985321 124799999999999998765 333445566666554 459
Q ss_pred EEEeCCCCCCCCCCccccccHHHHHHHHHHh-----CCcEEEEeCCCCCCCCCC----cccCCcceEEEccc
Q 003446 301 ILTLSIGPDEPPRDTITMLGIFDVLMLFARR-----AGVFVVQAAGNQGPAPST----VVSYSPWAVAAAAC 363 (819)
Q Consensus 301 VIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgAs 363 (819)
|||||||..............+..+++++.+ +|++||+||||+|..... .+...+++|+|||+
T Consensus 141 Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~ 212 (297)
T cd04059 141 IYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAV 212 (297)
T ss_pred EEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEee
Confidence 9999999764321111122344455555544 699999999999973221 12345677777764
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=328.46 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=114.5
Q ss_pred CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCC
Q 003446 156 GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVG 235 (819)
Q Consensus 156 gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~g 235 (819)
||+|||||||||++||+|.++.... +.+... ....+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~----------------------------~~~~~~-------~~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG----------------------------EVTIDL-------EIIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc----------------------------cccccc-------ccccCCCCCCCCCC
Confidence 7999999999999999999861110 000000 00011234567889
Q ss_pred CccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCC
Q 003446 236 HGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPDEPPRD 314 (819)
Q Consensus 236 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~ 314 (819)
|||||||||++. +|+++|+.+|+++..+ +..+++++||+|++++|++|||||||.....
T Consensus 46 HGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-- 105 (222)
T cd07492 46 HGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-- 105 (222)
T ss_pred cHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC--
Confidence 999999999753 5999999999998876 7788899999999999999999999975421
Q ss_pred ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccc
Q 003446 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAAC 363 (819)
Q Consensus 315 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs 363 (819)
....+..+++++.++|+++|+||||++.... .|+..+++|+|++.
T Consensus 106 ---~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 ---DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred ---cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2356788888999999999999999987543 36667888888863
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=327.45 Aligned_cols=246 Identities=30% Similarity=0.365 Sum_probs=185.0
Q ss_pred CCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCC
Q 003446 153 AGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFD 232 (819)
Q Consensus 153 ~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d 232 (819)
+|+||+|+|||+||+.+||+|.+....... +.. ..........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~----------------------------~~~--------~~~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASY----------------------------YVA--------VNDAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccc----------------------------ccc--------cccccCCCCCC
Confidence 699999999999999999999987111000 000 00000133457
Q ss_pred CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 003446 233 AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVDILTLSIGPDE 310 (819)
Q Consensus 233 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 310 (819)
.++|||||||+|+|+... ....|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||...
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~ 115 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNP 115 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCC
Confidence 789999999999998542 3468999999999999998764 55677899999999999999999999865
Q ss_pred CCCC--------ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc---------ccCCcceEEEccccccceeeeeE
Q 003446 311 PPRD--------TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTV---------VSYSPWAVAAAACTTDRIYPGSL 373 (819)
Q Consensus 311 ~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgAs~~~~~~~~~~ 373 (819)
.... .......+..+++.+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~------- 188 (267)
T cd04848 116 AIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN------- 188 (267)
T ss_pred cccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-------
Confidence 3311 012456778888899999999999999998754332 1234566666654221
Q ss_pred EeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCcc
Q 003446 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTS 453 (819)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~ 453 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccce
Q 003446 454 TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGR 533 (819)
Q Consensus 454 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCeeec--ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHH
Q 003446 534 VASFEGRAPIVSR--FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611 (819)
Q Consensus 534 ~~~~~~~~~~~a~--FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 611 (819)
+.... ||++|+... .+++.|||.+|+++.+. .+..|..++|||||||+|||+
T Consensus 189 --------~~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~ 242 (267)
T cd04848 189 --------GTIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGA 242 (267)
T ss_pred --------CCcccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHH
Confidence 11222 477776542 34799999999998752 134789999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhccc
Q 003446 612 AALIKQHNPSWTPTMIASAISSTAT 636 (819)
Q Consensus 612 aALl~q~~P~~sp~~ik~~L~~TA~ 636 (819)
+|||+|++|+|+++|||++|++||+
T Consensus 243 ~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 243 AALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=311.12 Aligned_cols=262 Identities=24% Similarity=0.341 Sum_probs=204.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
|++|++|+|||.|||+.-+||-|+.-.+.+ .|. ++ ..-
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnvKERT----NWT-------------------------NE-------------~tL 234 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNVKERT----NWT-------------------------NE-------------DTL 234 (1033)
T ss_pred cccCCceEEEEeecccccCCccccchhhhc----CCc-------------------------Cc-------------ccc
Confidence 899999999999999999999999752111 221 11 234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
.|..||||.|||+|||... -.|.||+++|+++|||.+.. .+.+.++.|++||+....||+|+|+|++
T Consensus 235 dD~lgHGTFVAGvia~~~e------------c~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP 302 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRNE------------CLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP 302 (1033)
T ss_pred ccCcccceeEeeeeccchh------------hcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc
Confidence 4678999999999999852 36999999999999999866 7889999999999999999999999986
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCC--cceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYS--PWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~--p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
. +...++-.-+.+.....|++|.|+||+||-..+..+++ ..||.||.
T Consensus 303 D------fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGG------------------------- 351 (1033)
T KOG4266|consen 303 D------FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGG------------------------- 351 (1033)
T ss_pred c------cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecc-------------------------
Confidence 3 34456666677788999999999999998655443321 12222221
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
.+..+.++.|
T Consensus 352 ----------------------------------------------------------------------IdfdD~IA~F 361 (1033)
T KOG4266|consen 352 ----------------------------------------------------------------------IDFDDHIASF 361 (1033)
T ss_pred ----------------------------------------------------------------------ccccchhhhh
Confidence 1112579999
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hCCCCC
Q 003446 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HNPSWT 623 (819)
Q Consensus 548 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~s 623 (819)
||||-+.-.+ +..-|+.||||++-|.+|..... ..+...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWEL-P~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWEL-PHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceeec-CCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 9999765321 11337999999999999986542 23678999999999999999999977 233368
Q ss_pred HHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 624 PTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 624 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|+-+|.+|+..|.+++... -+.||+|++|+.++.+
T Consensus 431 PASmKQaLiegA~kLpg~N-----------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPN-----------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCc-----------------hhhccCcchhHHHHHH
Confidence 9999999999999886432 2679999999998875
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=324.66 Aligned_cols=239 Identities=29% Similarity=0.354 Sum_probs=179.4
Q ss_pred CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-C--CCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 003446 233 AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-V--GTLADVIAAIDQATMDGVDILTLSIGPD 309 (819)
Q Consensus 233 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 309 (819)
...||||||||++|+.... ....||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999997543 245799999999999997653 2 3344689999999999999999999988
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCccc---CCcceEEEccccccceeeeeEEeCCCeEEeeecC
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS---YSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGL 386 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~ 386 (819)
..++... +.++.+-+.+-+.||++|+||||+||.-.++++ ....+|.|||........
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~---------------- 441 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ---------------- 441 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH----------------
Confidence 7775433 344444445568899999999999998777654 345788888743221100
Q ss_pred CCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcC
Q 003446 387 SGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLG 466 (819)
Q Consensus 387 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~G 466 (819)
..|.+
T Consensus 442 ---------a~y~~------------------------------------------------------------------ 446 (1304)
T KOG1114|consen 442 ---------AEYSV------------------------------------------------------------------ 446 (1304)
T ss_pred ---------hhhhh------------------------------------------------------------------
Confidence 00000
Q ss_pred ceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeec
Q 003446 467 FMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSR 546 (819)
Q Consensus 467 a~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 546 (819)
.......+..
T Consensus 447 ----------------------------------------------------------------------~e~vp~~~Yt 456 (1304)
T KOG1114|consen 447 ----------------------------------------------------------------------REPVPSNPYT 456 (1304)
T ss_pred ----------------------------------------------------------------------hccCCCCccc
Confidence 0001134678
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH----hCCCC
Q 003446 547 FSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HNPSW 622 (819)
Q Consensus 547 FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~ 622 (819)
+|||||+.| |.+--.|.|||+.|.|-- .. .-..-..|.|||||+|+++|.+|||++ .+-.|
T Consensus 457 WsSRgP~~D-------G~lGVsi~APggAiAsVP-~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~y 521 (1304)
T KOG1114|consen 457 WSSRGPCLD-------GDLGVSISAPGGAIASVP-QY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPY 521 (1304)
T ss_pred cccCCCCcC-------CCcceEEecCCccccCCc-hh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCC
Confidence 899999998 678889999999997642 11 122457899999999999999999976 46789
Q ss_pred CHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 623 TPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 623 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
||..||.+|++||.+++.. .+|.||.|+|++++|.+
T Consensus 522 tpysVrrAlenTa~~l~~i-----------------d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 522 TPYSVRRALENTATKLGDI-----------------DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred cHHHHHHHHHhcccccCcc-----------------chhccCcceeehhHHHH
Confidence 9999999999999988532 35889999999999986
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-32 Score=284.24 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHH--HhCCCcEEEeCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQA--TMDGVDILTLSIG 307 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIn~SlG 307 (819)
..|.++|||||||||||.. |++|+|+|+..++... ..+.+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 4478999999999999973 5679999987555222 233466777888 6789999999999
Q ss_pred CCCCCCC--ccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCC-----CCcccCCcceEEEcccc
Q 003446 308 PDEPPRD--TITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAP-----STVVSYSPWAVAAAACT 364 (819)
Q Consensus 308 ~~~~~~~--~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgAs~ 364 (819)
....... .......+..+++.+.++ |+++|+||||+|... ...+..++++|+|||++
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 7644310 001224567778777666 999999999999853 22355678889999754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=264.57 Aligned_cols=122 Identities=35% Similarity=0.477 Sum_probs=100.3
Q ss_pred CCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH-hCCCcEEEeCC
Q 003446 229 SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT-MDGVDILTLSI 306 (819)
Q Consensus 229 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~Sl 306 (819)
...+..+||||||++|++..... ...|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34567899999999999986432 126999999999999998766 67788999999999 89999999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhC-CcEEEEeCCCCCCCCC---CcccCCcceEEEcccc
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRA-GVFVVQAAGNQGPAPS---TVVSYSPWAVAAAACT 364 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgAs~ 364 (819)
|..... ....+..++..+.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 986432 235677778888887 9999999999998776 4677789999999753
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-23 Score=240.52 Aligned_cols=148 Identities=31% Similarity=0.401 Sum_probs=113.4
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+|++|+|||+||+..||+|.+.... .++|.+. .+....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~----------------------------~~~~~~~----------~~~~~~ 179 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVA----------------------------GGDFVDG----------DPEPPF 179 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccccc----------------------------ccccccC----------CCCCCC
Confidence 68999999999999999999999986110 0122211 000124
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCC-C-CCHHHHHHHHHHHHhCC--CcEEEeCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-V-GTLADVIAAIDQATMDG--VDILTLSI 306 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~dVIn~Sl 306 (819)
.|.++|||||+|++++.... +.....|++|+++++.+|++... | +..++++.+++++++.+ +++||||+
T Consensus 180 ~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~ 252 (508)
T COG1404 180 LDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSL 252 (508)
T ss_pred CCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecC
Confidence 68899999999999984210 01235799999999999999976 5 77788899999999999 99999999
Q ss_pred CCCCCCCCccccccHHHHHHHHHHhCC-cEEEEeCCCCCCCC
Q 003446 307 GPDEPPRDTITMLGIFDVLMLFARRAG-VFVVQAAGNQGPAP 347 (819)
Q Consensus 307 G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~ 347 (819)
|.. .. ......+..++..++..| +++|+++||.+...
T Consensus 253 g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~ 290 (508)
T COG1404 253 GGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNA 290 (508)
T ss_pred CCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCC
Confidence 975 11 123467788888888888 99999999998764
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-20 Score=190.25 Aligned_cols=156 Identities=17% Similarity=0.246 Sum_probs=100.3
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++||+|+++|+|.||||-||||+.+ |. --..|+|...
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~n---yn-----------------------aeasydfssn-------- 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN---YN-----------------------AEASYDFSSN-------- 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcc---cC-----------------------ceeecccccC--------
Confidence 6776 89999999999999999999999976 11 1123344332
Q ss_pred CCCCCCCCCC--CCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh-CCC
Q 003446 223 TSVDFLSPFD--AVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM-DGV 299 (819)
Q Consensus 223 ~~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~ 299 (819)
.+-+++...| .+.|||.|||-+++..+++.. -.|||.+.++..+|.++. -+..|+++|-...-+ ...
T Consensus 195 dpfpyprytddwfnshgtrcagev~aardngic--------gvgvaydskvagirmldq--pymtdlieansmghep~ki 264 (629)
T KOG3526|consen 195 DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKI 264 (629)
T ss_pred CCCCCCcccchhhhccCccccceeeeeccCCce--------eeeeeeccccceeeecCC--chhhhhhhhcccCCCCceE
Confidence 1112222222 579999999987766554432 159999999999999986 456677665432222 346
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHh-----CCcEEEEeCCCCCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARR-----AGVFVVQAAGNQGPA 346 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 346 (819)
+|.+.|||.....-.-+....+.-+|+-.-++ .|-+.|.|.|..|.+
T Consensus 265 hiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 265 HIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred EEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 89999999653220001112233334433333 467899999988764
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=177.77 Aligned_cols=103 Identities=23% Similarity=0.257 Sum_probs=82.8
Q ss_pred ccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhC---CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEE
Q 003446 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMD---GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVV 337 (819)
Q Consensus 261 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 337 (819)
.+.||||+|+|+.|++.++. ...++.++.+++.+ +++|||+|||....... ..+.+.++.++++|..+||+||
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEEE
Confidence 46899999999999997753 34577888888887 99999999998653311 2345678899999999999999
Q ss_pred EeCCCCCCCCC-----------CcccCCcceEEEccccccc
Q 003446 338 QAAGNQGPAPS-----------TVVSYSPWAVAAAACTTDR 367 (819)
Q Consensus 338 ~AAGN~g~~~~-----------~~~~~~p~vitVgAs~~~~ 367 (819)
+||||+|.... ..|+.+|+|++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 3467899999999987653
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=110.18 Aligned_cols=87 Identities=24% Similarity=0.328 Sum_probs=63.4
Q ss_pred EEecccceEEEEEEEEEecCCceeEEEEEeC--------CCC----------c-eEEEeCCeEEEeCCcEEEEEEEEEEe
Q 003446 726 TVSAVAKSLILQRSLKNVGNKTETYLTSVVH--------PNG----------T-TVSLYPPWFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 726 ~~~~~~~~~~~~~tv~N~g~~~~ty~~~~~~--------~~g----------~-~v~~~p~~~tv~~g~~~~~~v~~~~~ 786 (819)
++.+.....+++++|+|.|+++.+|++++.. ..| + .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 3445555678889999999999999999871 011 1 57788999999999999999999998
Q ss_pred cC----CCCeEEEEEEEEeCCcc-EEEEeEE
Q 003446 787 QA----IGDFSFGEIVLTGSLNH-IVRIPLS 812 (819)
Q Consensus 787 ~~----~~~~~~G~i~~~~~~~~-~l~~P~~ 812 (819)
+. .+.|++|||.|++++++ .|+|||+
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 83 47899999999998886 9999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-08 Score=96.93 Aligned_cols=103 Identities=23% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHH
Q 003446 429 AFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYY 508 (819)
Q Consensus 429 ~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~ 508 (819)
++...+++|||+||+| |.|.+.+|..+++.+||.|+|++|+..............+|.++| +.++++.|++|+
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 4455679999999998 568899999999999999999999875321111111346888887 889999999999
Q ss_pred hhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCC
Q 003446 509 EQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDF 554 (819)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~ 554 (819)
++ . ..+.|... .. ....+.++.||||||+-
T Consensus 113 ~~-~------~~i~~~~~--------~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 113 ES-S------KKLTFNTK--------KE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred hC-C------CeEEEEec--------cc-cccCCccccccCcCCCC
Confidence 76 1 12222211 11 23456799999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=86.51 Aligned_cols=79 Identities=29% Similarity=0.410 Sum_probs=54.8
Q ss_pred EEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhh---ccCcccEEEEeeeeeeEEEEEcCHHHHHH
Q 003446 34 IYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTL---EIGSYNKLYSFKYTVNGFAVHLTPTQAKK 110 (819)
Q Consensus 34 ~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~ng~~~~~~~~~~~~ 110 (819)
+|||.|++.... +...+.+.+.+.+++.+.. .....++.+.|...||||+++++++++++
T Consensus 1 ~YIV~~k~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~ 63 (82)
T PF05922_consen 1 RYIVVFKDDASA-----------------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEK 63 (82)
T ss_dssp EEEEEE-TTSTH-----------------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHH
T ss_pred CEEEEECCCCCc-----------------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHH
Confidence 699999998532 1123344444444444432 23357889999989999999999999999
Q ss_pred HhcCCCceEEEeCcccccc
Q 003446 111 LENAPQVKLVERDRRAKLM 129 (819)
Q Consensus 111 L~~~p~V~~v~~~~~~~~~ 129 (819)
|+++|+|++|+||..++++
T Consensus 64 L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 64 LRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHTSTTEEEEEEECEEEE-
T ss_pred HHcCCCeEEEEeCceEecC
Confidence 9999999999999998763
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.7e-08 Score=90.86 Aligned_cols=118 Identities=22% Similarity=0.263 Sum_probs=86.8
Q ss_pred EEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCc
Q 003446 373 LLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQT 452 (819)
Q Consensus 373 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~ 452 (819)
++++||+++.|+++.+... ..+++++...... ......|.. ..+...+++||||+|+++ .
T Consensus 2 i~LGng~~i~G~sl~~~~~----~~~~~~~~~~~~~---------~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~ 61 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL----KTYPLVYKSANSG---------DVDASLCLP-GSLDPSKVKGKIVLCDRG------G 61 (126)
T ss_pred EEeCCCCEEEEEEccCCCC----CccceEeccCcCC---------CCccccCCC-CCCChhhccccEEEEeCC------C
Confidence 5789999999999996542 3567766332111 234578963 445557899999999884 4
Q ss_pred c-chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhcc
Q 003446 453 S-TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQT 512 (819)
Q Consensus 453 ~-~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~ 512 (819)
+ .+.++..+++++||.|+|++|+....... ......+|.+.| ..++++.|++|+++..
T Consensus 62 ~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~-~~~~~~iP~v~I-~~~~g~~l~~y~~~~~ 120 (126)
T cd02120 62 NTSRVAKGDAVKAAGGAGMILANDPTDGLDV-VADAHVLPAVHV-DYEDGTAILSYINSTS 120 (126)
T ss_pred CccHHHHHHHHHHcCCcEEEEEecCCCCcee-cccccccceEEE-CHHHHHHHHHHHHcCC
Confidence 5 77889999999999999999987642222 222467999998 7799999999998753
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.4e-06 Score=98.53 Aligned_cols=99 Identities=21% Similarity=0.253 Sum_probs=62.9
Q ss_pred ccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCCCC-CCccccccHHHHHHHHHHhCCcEEEE
Q 003446 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGV-DILTLSIGPDEPP-RDTITMLGIFDVLMLFARRAGVFVVQ 338 (819)
Q Consensus 261 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV~ 338 (819)
..+-+||+|+|..+-. .. .....+..|+.+...+=+ -+|-.||+....- .....+.+.++.....|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~-~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PN-PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CC-CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999998866 21 222223333333222211 2333566652211 11122557788888899999999999
Q ss_pred eCCCCCCCCCC--------cccCCcceEEEcc
Q 003446 339 AAGNQGPAPST--------VVSYSPWAVAAAA 362 (819)
Q Consensus 339 AAGN~g~~~~~--------~~~~~p~vitVgA 362 (819)
|+|.+|....+ .|+.+|++.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876543 4678999999997
|
|
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.6e-06 Score=75.50 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc---cccccCCCCCeEEecC
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF---VAEPIPFAVPGILIPK 497 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~~p~~~i~~ 497 (819)
...|. ...+...+++|||++++| |.|+|.+|..+|+++||.++||||+...... ........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 36687 444555678999999999 7899999999999999999999998753111 11124567899997 7
Q ss_pred cchHHHHHHHHhh
Q 003446 498 VSTSEIILQYYEQ 510 (819)
Q Consensus 498 ~~~~~~l~~~~~~ 510 (819)
.++++.|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 8899999887653
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.2e-06 Score=74.77 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=58.2
Q ss_pred CCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC---CCccccccCCCCCeEEecCcchHHH
Q 003446 427 PEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY---GDFVAEPIPFAVPGILIPKVSTSEI 503 (819)
Q Consensus 427 ~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~---~~~~~~~~~~~~p~~~i~~~~~~~~ 503 (819)
...+...+++||||+|+| |.|++.+|+.+++++||.|+|++|.... ...........+|.++| +.++++.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345667789999999987 7899999999999999999999992211 12223455678999999 8899999
Q ss_pred HHHHH
Q 003446 504 ILQYY 508 (819)
Q Consensus 504 l~~~~ 508 (819)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 99875
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.3e-06 Score=90.98 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=96.5
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+++.|+|+|+|+...||++..... ..+.+++.... +
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~--------------------------~~~s~d~~~~~------~ 68 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD--------------------------PLGSYDVNRHD------N 68 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC--------------------------cceeEeeecCC------C
Confidence 6766 8999999999999999999999997611 22223332210 1
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH-hCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT-MDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dV 301 (819)
...+..+......|||-|++-.+...... .=..|+++++++..+|++... ..+...+..... ..-.++
T Consensus 69 ~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~---v~~~~~~~~~~~~~~~~di 137 (431)
T KOG3525|consen 69 DPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGC---VSDAVEAPSLGFGPCHIDI 137 (431)
T ss_pred CcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeee---cccceecccccCCCCCcee
Confidence 11111222345899999999988775211 113699999999999987641 112222222112 234688
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHH-----HhCCcEEEEeCCCCCCCCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFA-----RRAGVFVVQAAGNQGPAPS 348 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a-----~~~Gi~vV~AAGN~g~~~~ 348 (819)
-..|||......--+.-......+...+ ..+|-+.|+|.||.|....
T Consensus 138 ~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 138 YSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9999996532200011122333344333 3578899999999886543
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=73.68 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=63.1
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc--cc-cc-cCCCCCeEEec
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF--VA-EP-IPFAVPGILIP 496 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~-~~-~~~~~p~~~i~ 496 (819)
.+.|.+ ..+...+++|||++|.| |.|.+.+|..+++++||.++|++|+...... .. .+ ....+|.++|
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467864 34455679999999998 6788999999999999999999998762111 11 11 3456898887
Q ss_pred CcchHHHHHHHHhhc
Q 003446 497 KVSTSEIILQYYEQQ 511 (819)
Q Consensus 497 ~~~~~~~l~~~~~~~ 511 (819)
+.++++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 779999999998654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=72.46 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=62.8
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-Ccc--cc----ccCCCCCeE
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-DFV--AE----PIPFAVPGI 493 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~--~~----~~~~~~p~~ 493 (819)
.+.|..+. ...+++|||+|++| |.|+|.+|..+|+++||.++|+||+.... ... +. .....||.+
T Consensus 21 ~~gC~~~~--~~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELR--NIHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCC--CccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 46797532 24568999999998 68999999999999999999999986531 111 11 234578998
Q ss_pred EecCcchHHHHHHHHhhcc
Q 003446 494 LIPKVSTSEIILQYYEQQT 512 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~~ 512 (819)
+| +.++++.|++.+..+.
T Consensus 93 ~I-s~~dG~~L~~~l~~g~ 110 (118)
T cd02127 93 FL-LGKNGYMIRKTLERLG 110 (118)
T ss_pred Ee-cHHHHHHHHHHHHcCC
Confidence 87 7789999988876543
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-05 Score=71.72 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=60.7
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcc
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVS 499 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~ 499 (819)
..++|.+..... .+++|||+|++| |.|.+.+|..+++++||+++|+||+....-.........+|.+.+ .+
T Consensus 40 ~~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 457898654433 368999999998 579999999999999999999999875321111223334565544 88
Q ss_pred hHHHHHHHHhhc
Q 003446 500 TSEIILQYYEQQ 511 (819)
Q Consensus 500 ~~~~l~~~~~~~ 511 (819)
+|+.|++.+..+
T Consensus 111 ~G~~l~~~l~~G 122 (129)
T cd02124 111 DGEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHHhcC
Confidence 999999888654
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=74.61 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=58.0
Q ss_pred CCCCccCceEEEEEecCCccCCccc-----hHHHHHHHHhcCceEEEEEecCCCCCc---cccc-c-CCCCCeEEecCcc
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTST-----LTAVINTAITLGFMGFILIANSHYGDF---VAEP-I-PFAVPGILIPKVS 499 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~-~-~~~~p~~~i~~~~ 499 (819)
+...+++|||+|++| |.|. |.+|.++|+++||.|+|+||+....+. .+.. . ...||.++| +.+
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445578999999999 5777 999999999999999999999843221 1222 1 468999998 778
Q ss_pred hHHHHHHHHhh
Q 003446 500 TSEIILQYYEQ 510 (819)
Q Consensus 500 ~~~~l~~~~~~ 510 (819)
++++|++.+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 99999887743
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=72.58 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=64.0
Q ss_pred cccccCCCCCC-CCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC-CCcc--ccccCCCCCeEEe
Q 003446 420 YIEECQYPEAF-EPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY-GDFV--AEPIPFAVPGILI 495 (819)
Q Consensus 420 ~~~~C~~~~~~-~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~--~~~~~~~~p~~~i 495 (819)
..++|.+.... ...++.|+|+|++| |.|.|.+|..+|+.+||.++|+||+... .... .......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35679865542 34568999999998 6899999999999999999999998862 1111 1122346887776
Q ss_pred cCcchHHHHHHHHhhc
Q 003446 496 PKVSTSEIILQYYEQQ 511 (819)
Q Consensus 496 ~~~~~~~~l~~~~~~~ 511 (819)
+..+|+.|++++..+
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.3e-05 Score=70.68 Aligned_cols=81 Identities=10% Similarity=0.147 Sum_probs=61.9
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc-cc----cccCCCCCeEE
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF-VA----EPIPFAVPGIL 494 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~----~~~~~~~p~~~ 494 (819)
..+.|... +..+++|||+|+.| |.|+|.+|..+++++||+++|+||+....+. .+ ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 34679644 45778999999998 6899999999999999999999998753211 11 12345789988
Q ss_pred ecCcchHHHHHHHHhh
Q 003446 495 IPKVSTSEIILQYYEQ 510 (819)
Q Consensus 495 i~~~~~~~~l~~~~~~ 510 (819)
+ +.+++++|..+...
T Consensus 97 I-s~~~g~~L~~l~~~ 111 (117)
T cd04813 97 T-SRTSYHLLSSLLPK 111 (117)
T ss_pred E-cHHHHHHHHHhccc
Confidence 8 67888888877654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=70.42 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=62.0
Q ss_pred cccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc-ccc--ccCCCCCeEEec
Q 003446 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF-VAE--PIPFAVPGILIP 496 (819)
Q Consensus 420 ~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~~~--~~~~~~p~~~i~ 496 (819)
....|.+... . .+++|||++|+| +.|.+.+|..+++++||.|+|++|+...... .+. .....+|.++|
T Consensus 26 ~~~~C~~~~~-~-~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN-A-AAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc-C-CCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3467965443 2 359999999987 4688999999999999999999998764111 111 12346898887
Q ss_pred CcchHHHHHHHHhhc
Q 003446 497 KVSTSEIILQYYEQQ 511 (819)
Q Consensus 497 ~~~~~~~l~~~~~~~ 511 (819)
+.++++.|++|++..
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 789999999999754
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.9e-05 Score=71.42 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=62.0
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-----Cc-cc--cc---cCCC
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-----DF-VA--EP---IPFA 489 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~-~~--~~---~~~~ 489 (819)
...|.... ....++|||++++| |.|+|.+|..+|+++||.++|++|+.... .. .+ .+ ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787432 24568999999999 68999999999999999999999876532 11 11 11 2457
Q ss_pred CCeEEecCcchHHHHHHHHhhc
Q 003446 490 VPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 490 ~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
||.++| +..+|+.|++++..+
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhC
Confidence 899887 778999999988754
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.9e-05 Score=70.81 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=63.9
Q ss_pred cccccCCCC-CCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCcccc-----ccCCCCCeE
Q 003446 420 YIEECQYPE-AFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAE-----PIPFAVPGI 493 (819)
Q Consensus 420 ~~~~C~~~~-~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~-----~~~~~~p~~ 493 (819)
....|.... .+...+++||||+|.+ |.|.+.+|..+++.+||.|+|++|+......... .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 445685332 1456779999999987 5688999999999999999999998763211111 134578988
Q ss_pred EecCcchHHHHHHHHhhc
Q 003446 494 LIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~ 511 (819)
.| +.++++.|++|+.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 779999999999753
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-05 Score=70.32 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=62.7
Q ss_pred ccccCCCCCCC-CC----ccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc----------cc
Q 003446 421 IEECQYPEAFE-PS----LVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA----------EP 485 (819)
Q Consensus 421 ~~~C~~~~~~~-~~----~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----------~~ 485 (819)
.+.|.+..... +. ...++|+|++| |.|+|.+|..+|+++||.++|+||+....-..+ ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 46787665433 22 36889999998 689999999999999999999999865311111 11
Q ss_pred cCCCCCeEEecCcchHHHHHHHHhhc
Q 003446 486 IPFAVPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 486 ~~~~~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
....||.++| +.++++.|++.+..+
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcC
Confidence 2346898888 778999999888654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.1e-05 Score=71.44 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=60.9
Q ss_pred ccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc-c----ccCCCCCeEEe
Q 003446 421 IEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA-E----PIPFAVPGILI 495 (819)
Q Consensus 421 ~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-~----~~~~~~p~~~i 495 (819)
.+.|.+.. .+++|||+|++| |.|+|.+|..+++++||.++|+||+........ . .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 789999999999999999999999775311111 1 11357897766
Q ss_pred cCcchHHHHHHHHhhc
Q 003446 496 PKVSTSEIILQYYEQQ 511 (819)
Q Consensus 496 ~~~~~~~~l~~~~~~~ 511 (819)
+..+++.|++++...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=65.93 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=60.2
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCc---cccccCCCCCeEEecCc
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDF---VAEPIPFAVPGILIPKV 498 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~~p~~~i~~~ 498 (819)
..|.+. .+ +.+++|||++++| |.|.+.+|+.+++++||.++|+||+...... ...+....+|.++| +.
T Consensus 32 ~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 467632 22 2468999999998 6789999999999999999999998732111 11223456888887 77
Q ss_pred chHHHHHHHHhhc
Q 003446 499 STSEIILQYYEQQ 511 (819)
Q Consensus 499 ~~~~~l~~~~~~~ 511 (819)
++++.|++.+.+.
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.9e-05 Score=71.48 Aligned_cols=84 Identities=14% Similarity=0.254 Sum_probs=63.5
Q ss_pred ccccCCCCC--CCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccc-----cCCCCCeE
Q 003446 421 IEECQYPEA--FEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEP-----IPFAVPGI 493 (819)
Q Consensus 421 ~~~C~~~~~--~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~-----~~~~~p~~ 493 (819)
.++|..... .....+.|||++++| |.|+|.+|..+|+++||.++|++|+.......+.. ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 457874433 133678999999998 68999999999999999999999987532222211 24579999
Q ss_pred EecCcchHHHHHHHHhhc
Q 003446 494 LIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 494 ~i~~~~~~~~l~~~~~~~ 511 (819)
+| +.++++.|.+++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 98 778999998888654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=60.55 Aligned_cols=75 Identities=11% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCCccCceEEEEEecCCccCCcc--chHHHHHHHHhcCceEEEEEecCCCCCcc-----c-cccCCCCCeEEecCcchH
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTS--TLTAVINTAITLGFMGFILIANSHYGDFV-----A-EPIPFAVPGILIPKVSTS 501 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~-~~~~~~~p~~~i~~~~~~ 501 (819)
+...+++||||++.++ .+ .+.+|+.++++.||+|+|++|+....-.. . ......+|.+.| +.+++
T Consensus 38 ~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 3455699999999984 44 67899999999999999999876432110 0 122356999987 78899
Q ss_pred HHHHHHHhhc
Q 003446 502 EIILQYYEQQ 511 (819)
Q Consensus 502 ~~l~~~~~~~ 511 (819)
+.|...++.+
T Consensus 111 ~~L~~~l~~g 120 (127)
T cd04819 111 LRLARVAERN 120 (127)
T ss_pred HHHHHHHhcC
Confidence 9999888653
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.044 Score=48.86 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=61.9
Q ss_pred cceEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEe
Q 003446 731 AKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIP 810 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~~P 810 (819)
+...+.+++|+|.|..+..|++.......-.++++|..-.++||++.++.|+|.++...+. +++.|.+.-. +..+.+|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~-~~~~l~i~~e-~~~~~i~ 96 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGD-YEGSLVITTE-GGSFEIP 96 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCce-EEEEEEEEEC-CeEEEEE
Confidence 3445566799999999999998764423445778888888999999999999997665454 5699998754 4578888
Q ss_pred EEEE
Q 003446 811 LSVK 814 (819)
Q Consensus 811 ~~~~ 814 (819)
+-..
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 6544
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.016 Score=49.04 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=37.2
Q ss_pred ceEEEEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeE-EEeCCcEEEEEEEEEEecCC
Q 003446 732 KSLILQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWF-TIAPQGTQDLAIQFNVTQAI 789 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~-tv~~g~~~~~~v~~~~~~~~ 789 (819)
...+++.+|+|.|..+ ...+++...|.|-++.+.+.++ .|+||++++++++|++|...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 4567888999999765 4578888889998876777665 68999999999999999863
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.028 Score=52.92 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCCCccCceEEEEEecCCccCCcc------chHHH-------HHHHHhcCceEEEEEecCCC------CCcccc-ccCCC
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTS------TLTAV-------INTAITLGFMGFILIANSHY------GDFVAE-PIPFA 489 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~~~~~-~~~~~ 489 (819)
+...+++||||++.+ +.| .+..| ...+++.||.++|++|.... .+.... .....
T Consensus 33 ~~~~~v~GKIvlv~~------~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~ 106 (134)
T cd04815 33 APAGAVKGKIVFFNQ------PMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPK 106 (134)
T ss_pred cchhhcCCeEEEecC------CccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCC
Confidence 345679999999988 345 56666 68899999999999996421 122112 22346
Q ss_pred CCeEEecCcchHHHHHHHHhhc
Q 003446 490 VPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 490 ~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
+|.+.| +.+++..|...+...
T Consensus 107 IP~v~i-s~ed~~~L~r~l~~g 127 (134)
T cd04815 107 IPAAAI-SVEDADMLERLAARG 127 (134)
T ss_pred CCEEEe-chhcHHHHHHHHhCC
Confidence 999997 778888888777654
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.035 Score=52.43 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=47.7
Q ss_pred ceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC------Cc------cchHHHHHHHH
Q 003446 396 FLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN------QT------STLTAVINTAI 463 (819)
Q Consensus 396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~------g~------~~~~~~~~~~~ 463 (819)
...++++.+.... ...|. ..++...+++||||++.++..... +. .++..|...++
T Consensus 20 ~~aelVfvGyGi~------------a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~ 86 (142)
T cd04814 20 KDAPLVFVGYGIK------------APELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAA 86 (142)
T ss_pred cceeeEEecCCcC------------CCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHH
Confidence 5677777664321 23454 346667789999999988522100 00 15778999999
Q ss_pred hcCceEEEEEecCC
Q 003446 464 TLGFMGFILIANSH 477 (819)
Q Consensus 464 ~~Ga~g~i~~n~~~ 477 (819)
+.||.|+|++|+..
T Consensus 87 ~~GA~gvIii~~~~ 100 (142)
T cd04814 87 RHGAAGVLIVHELA 100 (142)
T ss_pred HCCCcEEEEEeCCC
Confidence 99999999999875
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.083 Score=48.69 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=50.6
Q ss_pred cceEEEEEEEEEecCCceeEEEEEeC----CCC--------------ce------EEEeCCeEEEeCCcEEEEEEEEEEe
Q 003446 731 AKSLILQRSLKNVGNKTETYLTSVVH----PNG--------------TT------VSLYPPWFTIAPQGTQDLAIQFNVT 786 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~~~~~~----~~g--------------~~------v~~~p~~~tv~~g~~~~~~v~~~~~ 786 (819)
..++++.++|+|.++++.+|.+.... ..| +. +++ |..|+|+||++++|+++++.|
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMP 104 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcC
Confidence 45678999999999999999987631 111 11 222 556999999999999999999
Q ss_pred cCC-CCeEEEEEEEE
Q 003446 787 QAI-GDFSFGEIVLT 800 (819)
Q Consensus 787 ~~~-~~~~~G~i~~~ 800 (819)
... .+.+-|-|.++
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 862 34444777765
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.06 Score=51.47 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=41.1
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCc------------cCCccchHHHHHHHHhcCceEEEEEecCCC
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGF------------YNQTSTLTAVINTAITLGFMGFILIANSHY 478 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~------------~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 478 (819)
..|. ..++...+++||||++.++... ....+++..|..+|...||.|+|+||++..
T Consensus 34 ~~~~-~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 34 PELG-YDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred cccc-hhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 3453 3355567899999999886320 011257789999999999999999998764
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.087 Score=48.41 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=40.6
Q ss_pred EEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCC
Q 003446 735 ILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAI 789 (819)
Q Consensus 735 ~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~ 789 (819)
.++..|.|.+..+.+|++++..++++++......++|+||++.++.|.+.+|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 5677999999999999999998889998665589999999999999999999863
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.028 Score=55.35 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=35.5
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
..+++|||+|+.+ |.+.+.+|+.+|+++||+|+|+|+++.
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 3468999999998 567889999999999999999999863
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.073 Score=49.97 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCccCceEEEEEecCCccCC------ccchHHHHHHHHhcCceEEEEEecCC
Q 003446 422 EECQYPEAFEPSLVQGSVVICTFSDGFYNQ------TSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 422 ~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
..|. ..++...+++||||++.++.....+ ...+..|.++|...||.|+|+++++.
T Consensus 36 ~~~~-~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 36 PELG-HDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred cCcC-HhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3454 3455567899999999985321111 12477899999999999999999875
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.11 Score=49.01 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=34.2
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
-+++|||+++.. |......|+++|+..||.|+|||.++.
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 568999999998 455678899999999999999999875
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.23 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=34.9
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHY 478 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 478 (819)
..+++||||++.+ |.+...+|+.+|+..||+|+|+|+++..
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4579999999987 4556678999999999999999998753
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.45 Score=52.70 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=52.2
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC-----CccccccCCCCCeEEecCcchHHHHHH
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG-----DFVAEPIPFAVPGILIPKVSTSEIILQ 506 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~~~~~~~~~~p~~~i~~~~~~~~l~~ 506 (819)
....+||+++..| |.|.|.+|...|+++||.++++.|+.... +.........||..+| +.+++..+.+
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4568999999998 79999999999999999999999995421 1112234567999888 5566666654
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=91.14 E-value=4.8 Score=37.00 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=47.5
Q ss_pred EEEEEEEEEecCCceeEEEEEeC---CCC----ceEEEeCCeEEEeCCcEEEEEEEEEEecC-CCCeEEEEEEEEe
Q 003446 734 LILQRSLKNVGNKTETYLTSVVH---PNG----TTVSLYPPWFTIAPQGTQDLAIQFNVTQA-IGDFSFGEIVLTG 801 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~---~~g----~~v~~~p~~~tv~~g~~~~~~v~~~~~~~-~~~~~~G~i~~~~ 801 (819)
...+++|+|.++.+..+.+.+.. ... -.+-++|..|+++||+++.|.| +..+.. .+....-+|.++.
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 45567999999988888777764 111 1577999999999999999999 664332 3333445677765
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.8 Score=46.68 Aligned_cols=57 Identities=16% Similarity=0.301 Sum_probs=48.6
Q ss_pred ceEEEEEEEEEecCCceeEEEEEe-CCCCceEEEeC-----CeEEEeCCcEEEEEEEEEEecC
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVV-HPNGTTVSLYP-----PWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~-~~~g~~v~~~p-----~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
.+..+++++.|.|..+.+|.++.. .|++-+..|.- .++.|.||++++|+|.+.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 455788899999999999999998 78887776653 3688899999999999999886
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.6 Score=48.58 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=54.0
Q ss_pred cceEEEEEEEEEecCCcee-EEEEEeCCCCceEEEeCCeE-EEeCCcEEEEEEEEEEecCC--CCeEEEEEEEEeC
Q 003446 731 AKSLILQRSLKNVGNKTET-YLTSVVHPNGTTVSLYPPWF-TIAPQGTQDLAIQFNVTQAI--GDFSFGEIVLTGS 802 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~t-y~~~~~~~~g~~v~~~p~~~-tv~~g~~~~~~v~~~~~~~~--~~~~~G~i~~~~~ 802 (819)
....++...+.|.|+.+-| -++++..|.|-++.|++.++ .++||++++|++|+++|... +.|. =.|.-++|
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~-i~i~~ksD 470 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYR-ITITAKSD 470 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEE-EEEEEeec
Confidence 3456788899999987644 56888899999999998866 45899999999999999874 4554 33444433
|
|
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.33 E-value=3.1 Score=38.94 Aligned_cols=66 Identities=24% Similarity=0.323 Sum_probs=48.8
Q ss_pred EEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEe
Q 003446 736 LQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTG 801 (819)
Q Consensus 736 ~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 801 (819)
+.+.|-|..+.. +..++....-...++--.|..+++.|++.+++..+|++.+...++.+|+|++.+
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 344556665432 223344434455676667999999999999999999999988889999999864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins | Back alignment and domain information |
|---|
Probab=88.39 E-value=6.5 Score=33.96 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=42.7
Q ss_pred eEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc
Q 003446 733 SLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLN 804 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~ 804 (819)
...+.++++|.|....++++.-..-. .-.|.+++|+||++.++.+.+.. .+.||+ |.+++.++
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~ag~~~~~~w~l~~---s~gwYD--l~v~~~~~ 81 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAAGQTVSLTWPLAA---SGGWYD--LTVTGPNG 81 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECCCCEEEEEEeecC---CCCcEE--EEEEcCCC
Confidence 34678899999998888877652111 12367899999999888887732 345554 66665444
|
; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process |
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=87.83 E-value=2 Score=48.58 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=48.3
Q ss_pred EEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecC
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
..++..+.|.+.++.+|++++...+++++...++.|+|+||++.++.|.+.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 3567799999999999999999888888887656899999999999999999864
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.1 Score=48.61 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=49.8
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccc---cccCCCCCeEEecCcchHHHHHHHH
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVA---EPIPFAVPGILIPKVSTSEIILQYY 508 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~---~~~~~~~p~~~i~~~~~~~~l~~~~ 508 (819)
......++++.| |+|+|.+|+.+|+++|..++|+||+........ .+....++.+++ +...++.+..|.
T Consensus 76 ~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v-s~~~ge~l~~~~ 147 (348)
T KOG4628|consen 76 TRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV-SVFSGELLSSYA 147 (348)
T ss_pred CCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-eeehHHHHHHhh
Confidence 345668889998 679999999999999999999999876432221 334455666666 445666666654
|
|
| >smart00635 BID_2 Bacterial Ig-like domain 2 | Back alignment and domain information |
|---|
Probab=82.58 E-value=5.5 Score=33.69 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=35.9
Q ss_pred eEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEE
Q 003446 761 TVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVR 808 (819)
Q Consensus 761 ~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~ 808 (819)
.|+++|..+++..|+++.|++++......+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999976544332 578999988776666
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.1 Score=40.15 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCCCCccCceEEEEEecCCc-cCC------c------cchHHHHHHHHhcCceEEEEEecCC
Q 003446 429 AFEPSLVQGSVVICTFSDGF-YNQ------T------STLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 429 ~~~~~~~~Gkiv~~~~~~~~-~~g------~------~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
++...+++||||++..+... ..+ . .+...|.+.+...||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 55667899999999875321 111 0 1345689999999999999998754
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm | Back alignment and domain information |
|---|
Probab=82.11 E-value=6.9 Score=34.91 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=40.7
Q ss_pred EEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEec
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~ 787 (819)
.+..++|+|.++....|++....+.. ..+.|..-.|.||++.++.|++....
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE-TTEEEEEEEEE-SSS
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEECCCCEEEEEEEEEecc
Confidence 45567999999999999999887764 56779999999999999999998744
|
These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 819 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 7e-57 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 9e-54 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 5e-12 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 5e-10 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 7e-10 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 2e-09 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 6e-09 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 6e-09 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 6e-09 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 6e-09 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 7e-09 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 7e-09 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 2e-08 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-08 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 2e-08 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 2e-08 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-08 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-08 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 7e-08 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 8e-08 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 8e-08 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 8e-08 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 1e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 1e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 1e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 1e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 1e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 2e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 2e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 2e-07 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 2e-07 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 3e-07 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 4e-07 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 4e-07 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 8e-07 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-06 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 1e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 1s2n_A | 284 | Crystal Strucure Of A Cold Adapted Subtilisin-Like | 2e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 3e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 6e-06 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 8e-06 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 2e-05 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 3e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 2e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 2e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 2e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 2e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 2e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 2e-05 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 3e-05 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 3e-05 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 3e-05 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 4e-05 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 5e-05 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 7e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 7e-05 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 7e-05 | ||
| 3lxu_X | 1354 | Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I | 2e-04 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-04 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 4e-04 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 5e-04 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 6e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine Proteinase Length = 284 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 463 bits (1191), Expect = e-153
Identities = 195/701 (27%), Positives = 300/701 (42%), Gaps = 70/701 (9%)
Query: 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD 189
T++T FL L G+ +++ +D+GI P SF + + + G
Sbjct: 1 TTHTSDFLKLNPSSGLWPAS--GLGQDVIVAVLDSGIWPESASFQD-DGMPEIPKRWKGI 57
Query: 190 CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAG 249
C+ G +F S CN K++ A +F+ G A ++ S D GHG+H AS AGN
Sbjct: 58 CKPGTQFNASMCNRKLIGANYFNKGILA-NDPTVNITMNSARDTDGHGTHCASITAGNFA 116
Query: 250 VPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPD 309
V G+ G A G+AP AR+AVYK + +D+IAA+DQA DGVD++++S G
Sbjct: 117 KGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYR 176
Query: 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIY 369
P + A GV V +AGN+GP ++ + SPW + A+ TDR +
Sbjct: 177 FIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTF 232
Query: 370 PGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEA 429
G+L LGNGLK+ G L ++ + + +C E
Sbjct: 233 AGTLTLGNGLKIRGWSLFPARAFVRDS--PVIYNKTL---------------SDCSSEEL 275
Query: 430 FE-PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPF 488
+ ++VIC + F +Q +T I I+ F
Sbjct: 276 LSQVENPENTIVICDDNGDFSDQMRIITRA-------RLKAAIFISEDPGVF---RSATF 325
Query: 489 AVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFS 548
PG+++ K + ++ Y + A I AP+V+ S
Sbjct: 326 PNPGVVVNK-KEGKQVINYVKNSVT-----------PTATITFQETYLDTKPAPVVAASS 373
Query: 549 SRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM----LTGCNFALLSGTSMA 604
+RGP SR+ + KPD++APG I AA+ P + L ++ L SGTSMA
Sbjct: 374 ARGP-----SRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMA 428
Query: 605 TPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFG 664
PH AGIAA++K +P W+P+ I SA+ +TA DN + I + +T D G
Sbjct: 429 APHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD----NNKAATPLDMG 484
Query: 665 SGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPS 724
+G V RALDPGLV +DY++ LCSL ++ A ++ + A+LN PS
Sbjct: 485 AGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPS 544
Query: 725 VTV------SAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQG-TQ 777
+ +R++ NVG TY + P +T+S+ P + Q
Sbjct: 545 FIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQ 604
Query: 778 DLAIQFNVTQAI-GDFSFGEIVLTGSL-NHIVRIPLSVKPV 816
+ + G I NH VR P+ P+
Sbjct: 605 SYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 457 bits (1176), Expect = e-152
Identities = 192/694 (27%), Positives = 292/694 (42%), Gaps = 81/694 (11%)
Query: 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGD 189
T+ + FLG P V IV+G +DTGI P PSF + F P + G
Sbjct: 1 TTRSWDFLGFPLTVP----RRSQVESNIVVGVLDTGIWPESPSFDD-EGFSPPPPKWKGT 55
Query: 190 CETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAG 249
CET F CN KI+ AR + G + D P D GHG+H ASTAAG
Sbjct: 56 CETSNNFR---CNRKIIGARSYHIGRPI-----SPGDVNGPRDTNGHGTHTASTAAGGLV 107
Query: 250 VPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPD 309
+ G G A G P ARIA YK + + D++AA D A DGVDI++LS+G
Sbjct: 108 SQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGA 167
Query: 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIY 369
P + + A G+ +AGN GP T S SPW ++ AA T DR +
Sbjct: 168 NPRHYF---VDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKF 224
Query: 370 PGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEA 429
+ +GNG GV ++ LV RD+ ++
Sbjct: 225 VTQVQIGNGQSFQGVSINTF----DNQYYPLVSGRDIPNTGFDK------STSRFCTDKS 274
Query: 430 FEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFA 489
P+L++G +V+C S G + +L +L+ ++ +
Sbjct: 275 VNPNLLKGKIVVCEASFGPHEFFKSLDGA----------AGVLMTSNTRDY----ADSYP 320
Query: 490 VPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSS 549
+P ++ + L+Y + A I + AP+V FSS
Sbjct: 321 LPSSVLDP-NDLLATLRYIYSIR-----------SPGATIFKSTTI-LNASAPVVVSFSS 367
Query: 550 RGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIA 609
RGP +R DV+KPD+ PG +I AAW V+ + + F ++SGTSM+ PHI
Sbjct: 368 RGP-----NRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHIT 422
Query: 610 GIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVS 669
GIA +K +NP+W+P I SA+ +TA+ + F +GSG V+
Sbjct: 423 GIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQ-------------AEFAYGSGHVN 469
Query: 670 ATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATG---IWCNHSLSHPANLNLPSVT 726
+A+ PGLV DY+ FLC + +++ TG + + +LN PS
Sbjct: 470 PLKAVRPGLVYDANESDYVKFLCGQ-GYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG 528
Query: 727 VSAV---AKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQG-TQDLAIQ 782
+S + R+L +V + TY + P G T+S+ P + G + +
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588
Query: 783 FNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816
+ G +V + H VR P+++ +
Sbjct: 589 VRGSIK-GFVVSASLVWSDG-VHYVRSPITITSL 620
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 315 bits (807), Expect = 2e-94
Identities = 104/705 (14%), Positives = 205/705 (29%), Gaps = 146/705 (20%)
Query: 141 QGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSS 200
+ + + G G V+ +D G + +H ++ D E + +
Sbjct: 7 KTLQEK----AGKGAGTVVAVIDAGFDKNHEAWRL-TDKTKARYQSKEDLEKAKKEHGIT 61
Query: 201 ----CNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDG 256
N K+ +S HG+HV+ +GNA +
Sbjct: 62 YGEWVNDKVAYYHDYS-------------KDGKTAVDQEHGTHVSGILSGNA----PSET 104
Query: 257 FFYGLASGMAPCARIAVYKAMYPT--VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRD 314
G P A++ + + + AI A G ++ +S G
Sbjct: 105 KEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYA 164
Query: 315 TITMLGIFDVLMLFARRAGVFVVQAAGNQG-------------PAPSTVVSYS--PWAVA 359
+ +A+ GV +V +AGN P V + + +
Sbjct: 165 NLP--DETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLT 222
Query: 360 AAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQ 419
A+ + D+ ++ + + V+ +
Sbjct: 223 VASYSPDKQLTETVRVKTADQQDKEMP-------------------VLSTNRFEPNKAYD 263
Query: 420 YIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG 479
Y + + + V+G + + I A G +G ++ N G
Sbjct: 264 YAYANRGTKEDDFKDVKGKIALIERG------DIDFKDKIAKAKKAGAVGVLIYDNQDKG 317
Query: 480 DFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAG--IGEGRVASF 537
+ P +P I + + G+ +K N Q
Sbjct: 318 FPIELPNVDQMPAAFISR------------------KDGLLLKDNPQKTITFNATPKVLP 359
Query: 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFAL 597
+SRFSS G +KPD+ APG I ++ + +A
Sbjct: 360 TASGTKLSRFSSWGL-------TADGNIKPDIAAPGQDILSSVANNK----------YAK 402
Query: 598 LSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTA-TKYDNYGQLIMAEGFEITSTY 656
LSGTSM+ P +AGI L+++ + P M S A + + E
Sbjct: 403 LSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED----EKA 458
Query: 657 NSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSH 716
+ G+G V A +A + ++ +D S L + +S
Sbjct: 459 YFSPRQQGAGAVDAKKASAATMYVTD--KDNTSSKVHLNN-----------------VSD 499
Query: 717 PANLNLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGT 776
+ + S + L Q +++ + + + TI +
Sbjct: 500 KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALA----PKVLYETSWQKITIPANSS 555
Query: 777 QDLAIQFNVTQAI---------GDFSFGEIVLT--GSLNHIVRIP 810
+ + + + ++ G F G + + ++ IP
Sbjct: 556 KQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIP 600
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 6e-26
Identities = 92/556 (16%), Positives = 150/556 (26%), Gaps = 180/556 (32%)
Query: 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFF 211
+ I +D+G + SH V
Sbjct: 19 SQAGNRTICIIDSGYDRSHNDLN----------------------------ANNV----- 45
Query: 212 SAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG---NAGVPVVVDGFFYGLASGMAPC 268
G T N P + HG+HVA T A N GV G+ P
Sbjct: 46 -TGTNNSGTGNWY----QPGNNNAHGTHVAGTIAAIANNEGV------------VGVMPN 88
Query: 269 --ARIAVYKAMYPT-VGTLADVIAAIDQAT-MDGVDILTLSIG---PDEPPRDTITMLGI 321
A I + K G + ++AAID G +++T+S+G R+ +
Sbjct: 89 QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN---- 144
Query: 322 FDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAACT-TDRI--------- 368
GV ++ AAGN G + SY ++ AA
Sbjct: 145 ------THYNNGVLLIAAAGNAGDS---SYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ 195
Query: 369 ----YPG----SLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQY 420
PG S + +L + + G + + L +
Sbjct: 196 VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATG 255
Query: 421 IEECQYPEAFEPSLVQGSVVICTFS-DGFYNQTSTLTAVINTAITLGFMGFILIANSHYG 479
S + IC G + T G G I+ +NS
Sbjct: 256 ALAECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALP 315
Query: 480 DFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEG 539
+ A I +P VS +A
Sbjct: 316 GLQNPFLVDANSDITVPSVSVD----------------------------RATGLAL--- 344
Query: 540 RAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLS 599
+ G V G+Q + ++
Sbjct: 345 -------KAKLGQS-------------TTVSNQGNQDYEYYN------------------ 366
Query: 600 GTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNST 659
GTSMATPH++G+A L+ ++P + + + +A+++TA G
Sbjct: 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG----------RDNQ--- 413
Query: 660 HFDFGSGLVSATRALD 675
G G+++A A
Sbjct: 414 ---TGYGMINAVAAKA 426
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 74/361 (20%), Positives = 116/361 (32%), Gaps = 90/361 (24%)
Query: 40 EGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRIL------------QSTLEIGSYN 87
+P + S K L +K + D + L+
Sbjct: 2 PQKPAVRNVSQQKNYGLLTPGLFKKVQRMSWDQEVSTIIMFDNQADKEKAVEILDFLGAK 61
Query: 88 KLYSFKYTVNGFAVHLTPTQAKKL-----------ENAPQVKLVERDRRAKLMTSYTPQF 136
Y++ + AV + + V+ ++ D K+
Sbjct: 62 IKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLD 120
Query: 137 LGLPQ----GVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCET 192
Q +W G GI IG +DTGI+ SHP
Sbjct: 121 ESAAQVMATNMWNLGYD----GSGITIGIIDTGIDASHPDLQ------------------ 158
Query: 193 GPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPV 252
GK++ F G +P+D GHG+HVAS AAG
Sbjct: 159 ----------GKVIGWVDFVNGKT------------TPYDDNGHGTHVASIAAGTGAAS- 195
Query: 253 VVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAID----QATMDGVDILTLSIG 307
G GMAP A++ K + G+++D+I +D G+ ++ LS+G
Sbjct: 196 ------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLG 249
Query: 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY--SPWAVAAAACTT 365
+ T ++ + A AG+ VV AAGN GP TV S + + A
Sbjct: 250 SSQSSDGTDSL----SQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK 305
Query: 366 D 366
Sbjct: 306 Y 306
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 3e-21
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
++ FSSRGP + LKP+V+APG+ I AA + GT+M
Sbjct: 309 ITDFSSRGP-------TADNRLKPEVVAPGNWIIAAR-ASGTSMGQPINDYYTAAPGTAM 360
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
ATPH+AGIAAL+ Q +PSWTP + +A+ TA +
Sbjct: 361 ATPHVAGIAALLLQAHPSWTPDKVKTALIETADI---------------VKPDEIADIAY 405
Query: 664 GSGLVSATRALDPGLVLSVEFEDYIS 689
G+G V+A +A + F Y+S
Sbjct: 406 GAGRVNAYKAAYYDNYAKLTFTGYVS 431
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-22
Identities = 51/322 (15%), Positives = 88/322 (27%), Gaps = 69/322 (21%)
Query: 77 LQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQ-VKLVERDRRAKLMTSYTPQ 135
++ S N +Y+ ++ + +T A L N +K + + + T
Sbjct: 57 FNKLVKKKSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTID 115
Query: 136 FL---------------GLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFE 180
+ I +DTG+ +H N F
Sbjct: 116 RTSNESLFSRQWDMNKITNNGASYDDLPK----HANTKIAIIDTGVMKNHDDLKNN--FS 169
Query: 181 PNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHV 240
+ + G R G D D GHG+ V
Sbjct: 170 TDSKNLVPL--NGFRGTEPEETG----------------------DVHDVNDRKGHGTMV 205
Query: 241 ASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVD 300
+ + N + G+AP + +Y+ L V AI QA DG
Sbjct: 206 SGQTSANGKL------------IGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQ 253
Query: 301 ILTLSIGPDEPPRDTITMLGIFDVLML---------FARRAGVFVVQAAGNQGPAPSTVV 351
++ +S+G D + +A++ VV AAGN G +
Sbjct: 254 VINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQ 313
Query: 352 SYSPWAVAAAACTTDRIYPGSL 373
+ P S+
Sbjct: 314 KLKLQREYQGNGEV-KDVPASM 334
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 5e-15
Identities = 25/145 (17%), Positives = 46/145 (31%), Gaps = 42/145 (28%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM------------LT 591
+S FS+ G ++TD++ APG
Sbjct: 349 LSEFSNFGMNYTDIA------------APGGSFAYLNQFGVDKWMNEGYMHKENILTTAN 396
Query: 592 GCNFALLSGTSMATPHIAGIAALIK-QHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
+ +GT++ATP ++G ALI +++ P + T +N
Sbjct: 397 NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKP-------- 448
Query: 651 EITSTYNSTHFDFGSGLVSATRALD 675
+G G + +AL+
Sbjct: 449 ---------FSRYGHGELDVYKALN 464
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 3e-22
Identities = 63/305 (20%), Positives = 101/305 (33%), Gaps = 82/305 (26%)
Query: 94 YTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFL-----------GLPQ- 141
+ V + KL+ P V+ VE D +A L+ + G+ +
Sbjct: 31 KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERV 90
Query: 142 ---GVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPL 198
VW+ G I + +DTG++ HP A
Sbjct: 91 KAPSVWSITDGS---VSVIQVAVLDTGVDYDHPDLA------------------------ 123
Query: 199 SSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG-NAGVPVVVDGF 257
I G S D GHG+HV T A N + VV
Sbjct: 124 ----ANIAWCVSTLRG-------KVSTKLRDCADQNGHGTHVIGTIAALNNDIGVV---- 168
Query: 258 FYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPR--- 313
G+AP +I + + G+ +D+ I+QA + +
Sbjct: 169 ------GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDD 222
Query: 314 ---DTITM-LG------IFDVLMLFARRAGVFVVQAAGNQGP-APSTVVSYSPWAVAAAA 362
+ I+M LG +++ A AG+ +V A+GN+G +PS +Y P +A A
Sbjct: 223 DAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAY-PEVIAVGA 281
Query: 363 CTTDR 367
D
Sbjct: 282 --IDS 284
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 34/135 (25%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
++ FS+R P+ V APG I + + ++ L GT+M
Sbjct: 288 IASFSNRQPE---------------VSAPGVDILSTY----------PDDSYETLMGTAM 322
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITST---YNSTH 660
ATPH++G+ ALI+ ++ +K G L IT+
Sbjct: 323 ATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGIL------HITADDLGPTGWD 376
Query: 661 FDFGSGLVSATRALD 675
D+G G+V A A+
Sbjct: 377 ADYGYGVVRAALAVQ 391
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-22
Identities = 49/235 (20%), Positives = 80/235 (34%), Gaps = 39/235 (16%)
Query: 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCN 594
A E V ++SR P V APG I + T
Sbjct: 410 AMREKLPGNVYTWTSRDP-------CIDGGQGVTVCAPGGAIASVPQF--------TMSK 454
Query: 595 FALLSGTSMATPHIAGIAALI----KQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
L++GTSMA PH+AG AL+ KQ N ++P I AIS TATK
Sbjct: 455 SQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD-------- 506
Query: 651 EITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWC 710
F G GL++ +A + ++ + F + ++ I G+
Sbjct: 507 ---------PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQR 557
Query: 711 NHSLSHPANL--NLPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVS 763
N S+ + + + + L + ++ + + + T S
Sbjct: 558 N-SIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRS 611
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 3e-16
Identities = 33/176 (18%), Positives = 66/176 (37%), Gaps = 28/176 (15%)
Query: 230 PFDAVGHGSHVASTAAG-NAGVPVVVDGFFYGLASGMAPCARIAVYKAM---YPTVGTLA 285
+ HG+HV+S A+G ++ V G+AP A+I ++ T
Sbjct: 266 VGMSSPHGTHVSSIASGNHSSRDVD----------GVAPNAKIVSMTIGDGRLGSMETGT 315
Query: 286 DVIAAIDQA-----TMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAA 340
++ A+ + +D++ +S G ++ + +++ + GV V +A
Sbjct: 316 ALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIG---ELMNEVVNKYGVVWVASA 372
Query: 341 GNQGPAPSTVVS----YSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS--GPT 390
GN GPA TV + P + A + ++ + L + P
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMREKLPGNVYTWTSRDPC 428
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 2e-20
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
V+ +SSRG + ++ APG +++ W + +SGTSM
Sbjct: 203 VADYSSRGY-ISTAGDYVIQEGDIEISAPGSSVYSTWY----------NGGYNTISGTSM 251
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYG 642
ATPH++G+AA I NPS + T + S + A D G
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 55/225 (24%), Positives = 79/225 (35%), Gaps = 72/225 (32%)
Query: 153 AGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFS 212
G GI I +DTG+N SHP + + F
Sbjct: 24 GGSGINIAVLDTGVNTSHPDLV----------------------------NNVEQCKDF- 54
Query: 213 AGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG---NAGVPVVVDGFFYGLASGMAPCA 269
T T+ S D GHG+HVA TA + + G+AP A
Sbjct: 55 -------TGATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIY----------GVAPDA 97
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGV-----DILTLSIG---PDEPPRDTITMLG 320
+ YK + + G D+ AAI A I+++S+G + +
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN--- 154
Query: 321 IFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAA 362
+A GV +V AAGN G + T + Y P A+A AA
Sbjct: 155 -------YAYSKGVLIVAAAGNSGYSQGT-IGYPGALPNAIAVAA 191
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 3e-20
Identities = 46/241 (19%), Positives = 73/241 (30%), Gaps = 58/241 (24%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
+ G G+G ++ DTG++ + + F I+
Sbjct: 13 AQSSYGLY---GQGQIVAVADTGLDTGRNDSSMHEAFRGKITAL---------------- 53
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLA 262
+ D GHG+HVA + GN
Sbjct: 54 -------------------YALGRTNNANDTNGHGTHVAGSVLGNGS-----------TN 83
Query: 263 SGMAPCARIAVYKAMYP---TVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITML 319
GMAP A + M G +++ QA G I T S G T
Sbjct: 84 KGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSR 143
Query: 320 GIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY--SPWAVAAAACTTDRIYPGSLLLGN 377
+ D + R+ + ++ AAGN+GP T+ + + A+ A R GS
Sbjct: 144 NVDD----YVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNI 199
Query: 378 G 378
Sbjct: 200 N 200
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 3e-18
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 36/198 (18%)
Query: 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCN 594
S+ V++FSSRGP +KPDV+APG I +A S ++ +
Sbjct: 193 GSYADNINHVAQFSSRGP-------TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHD 245
Query: 595 --FALLSGTSMATPHIAGIAALIKQH-----NPSWTPTMIASAISSTATKYDNYGQLIMA 647
+A + GTSMATP +AG A +++H + P+++ +A+ + A
Sbjct: 246 SKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL------- 298
Query: 648 EGFEITSTYNSTHFDFGSGLVSATRALDPGLV---LSVEFEDYISFLCSLADSDPVSIKA 704
+ + G G V+ ++L+ V S+ ++ + P+ I
Sbjct: 299 ---------GYPNGNQGWGRVTLDKSLNVAYVNESSSLSTSQKATYSFTATAGKPLKI-- 347
Query: 705 ATGIWCNHSLSHPANLNL 722
+ +W + S A++ L
Sbjct: 348 -SLVWSDAPASTTASVTL 364
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 42/132 (31%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+ FSS GP + DV+APG I + G + +GTSM
Sbjct: 186 RASFSSVGP-------------ELDVMAPGVSIQSTLP----------GNKYGAYNGTSM 222
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
A+PH+AG AALI +P+WT T + S++ +T TK + +
Sbjct: 223 ASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSFY-------------------Y 263
Query: 664 GSGLVSATRALD 675
G GL++ A
Sbjct: 264 GKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-17
Identities = 49/223 (21%), Positives = 77/223 (34%), Gaps = 72/223 (32%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G + + +D+GI+ SHP +
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLK------------------------------------VAG 46
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG-NAGVPVVVDGFFYGLASGMAPCARIA 272
GA V + D HG+HVA T A N + V+ G+AP A +
Sbjct: 47 GASMVPSETNPFQ-----DNNSHGTHVAGTVAALNNSIGVL----------GVAPSASLY 91
Query: 273 VYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIG---PDEPPRDTITMLGIFDVLMLF 328
K + G + +I I+ A + +D++ +S+G + +
Sbjct: 92 AVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----------K 141
Query: 329 ARRAGVFVVQAAGNQGP-APSTVVSY---SPWAVAAAACTTDR 367
A +GV VV AAGN+G S+ V Y P +A A D
Sbjct: 142 AVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA--VDS 182
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 42/131 (32%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+ FS G D++APG + + + G +A L+GTSM
Sbjct: 180 RASFSQYGA-------------GLDIVAPGVNVQSTYP----------GSTYASLNGTSM 216
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
ATPH+AG AAL+KQ NPSW+ I + + +TAT + +
Sbjct: 217 ATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL-------------------Y 257
Query: 664 GSGLVSATRAL 674
GSGLV+A A
Sbjct: 258 GSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 51/219 (23%), Positives = 79/219 (36%), Gaps = 70/219 (31%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G G+ + +DTGI+ +HP I F
Sbjct: 23 GSGVKVAVLDTGIS-THPDL------------------------------NIRGGASFVP 51
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG-NAGVPVVVDGFFYGLASGMAPCARIA 272
G S D GHG+HVA T A N + V+ G+AP A +
Sbjct: 52 GEP------------STQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELY 89
Query: 273 VYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARR 331
K + + G+++ + ++ A +G+ + LS+G P + + A
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSA-------TLEQAVNSATS 142
Query: 332 AGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAACTTDR 367
GV VV A+GN G +SY A+A A TD+
Sbjct: 143 RGVLVVAASGNSGAGS---ISYPARYANAMAVGA--TDQ 176
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 3e-19
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 42/131 (32%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+ FSS G + +V+APG +++ + +A L+GTSM
Sbjct: 185 RASFSSVGA-------------ELEVMAPGAGVYSTYP----------TNTYATLNGTSM 221
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
A+PH+AG AALI +P+ + + + + +SSTAT + +
Sbjct: 222 ASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFY-------------------Y 262
Query: 664 GSGLVSATRAL 674
G GL++ A
Sbjct: 263 GKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 50/223 (22%), Positives = 78/223 (34%), Gaps = 73/223 (32%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G + + +DTGI SHP +V F A
Sbjct: 23 GANVKVAVLDTGIQASHPDL------------------------------NVVGGASFVA 52
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAG-NAGVPVVVDGFFYGLASGMAPCARIA 272
G D GHG+HVA T A + V+ G+AP +
Sbjct: 53 GEA------------YNTDGNGHGTHVAGTVAALDNTTGVL----------GVAPSVSLY 90
Query: 273 VYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIG---PDEPPRDTITMLGIFDVLMLF 328
K + + G+ + +++ I+ AT +G+D++ +S+G + +
Sbjct: 91 AVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----------N 140
Query: 329 ARRAGVFVVQAAGNQGPAPSTV-VSY---SPWAVAAAACTTDR 367
A GV VV AAGN G + ST + Y +A A D
Sbjct: 141 AYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA--VDS 181
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 91.2 bits (226), Expect = 4e-19
Identities = 49/315 (15%), Positives = 83/315 (26%), Gaps = 76/315 (24%)
Query: 63 KGQTKRLMDSHDRILQSTLEIGSYNK--LYSFKYTVNGFAVHLTPTQAKKLENAPQVKLV 120
+ + R LQ+ Y L+ F + GF V ++ + P V +
Sbjct: 84 EETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 143
Query: 121 ERDRRAKLMTSYTPQFLGL----PQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANY 176
E D P L P + G + + +DT I H
Sbjct: 144 EEDSSVF--AQSIPW--NLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEG- 198
Query: 177 NPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGH 236
R + V + + H
Sbjct: 199 --------------------------------RVMVTDFENVPEEDGTRFHRQASKCDSH 226
Query: 237 GSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQAT 295
G+H+A +G +G+A A + + + GT++ + ++
Sbjct: 227 GTHLAGVVSGR--------------DAGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIR 272
Query: 296 MDGVDILTLSIGPDEPPRDTITM-LG-----IFDVLMLFARRAGVFVVQAAGNQGPAPST 349
+ + L + + RAGV +V AAGN
Sbjct: 273 KS--------QLVQPVGPLVVLLPLAGGYSRVLNAACQRLARAGVVLVTAAGNFR---DD 321
Query: 350 VVSYSPWAVAAAACT 364
YSP A A T
Sbjct: 322 ACLYSP-ASAPEVIT 335
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 7e-13
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFAL--LSGTSMATPHIAGIAALIKQHNPSWTPT 625
D+ APG I A S C+ SGTS A H+AGIAA++ P T
Sbjct: 360 DLFAPGEDIIGASS----------DCSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 409
Query: 626 MIASAISSTATK 637
+ + + K
Sbjct: 410 ELRQRLIHFSAK 421
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 58/274 (21%), Positives = 88/274 (32%), Gaps = 80/274 (29%)
Query: 111 LENAPQVKLVERDRRAKLM-TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPS 169
+ + + D+ + L + + P VW G G +IG +DTG
Sbjct: 1 MRKFRLIPYKQVDKVSALSEVPMGVEIVEAPA-VWRASAK----GAGQIIGVIDTGCQVD 55
Query: 170 HPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229
HP A +I+ + T +
Sbjct: 56 HPDLA----------------------------ERIIGGVNLTTDYGGDET--------N 79
Query: 230 PFDAVGHGSHVAST-AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADV 287
D GHG+HVA T AA G VV G+AP A + + KA+ G + +
Sbjct: 80 FSDNNGHGTHVAGTVAAAETGSGVV----------GVAPKADLFIIKALSGDGSGEMGWI 129
Query: 288 IAAIDQATMD------GVDILTLSIG---PDEPPRDTITMLGIFDVLMLFARRAGVFVVQ 338
AI A + I+T+S+G E D + +A V VV
Sbjct: 130 AKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----------YAVSNNVSVVC 179
Query: 339 AAGNQGPAPSTVVSYS-----PWAVAAAACTTDR 367
AAGN+G ++ +A A D
Sbjct: 180 AAGNEGDGREDTNEFAYPAAYNEVIAVGA--VDF 211
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 3e-14
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 44/137 (32%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
+S F++ + D++APG I + + +A LSGT+M
Sbjct: 215 LSDFTNTNE-------------EIDIVAPGVGIKSTY----------LDSGYAELSGTAM 251
Query: 604 ATPHIAGIAALIKQHNP-----SWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNS 658
A PH+AG ALI S + T I + + AT I +
Sbjct: 252 AAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATP-------IGFTAQAEGN---- 300
Query: 659 THFDFGSGLVSATRALD 675
G + +
Sbjct: 301 -----GFLTLDLVERIT 312
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 4e-17
Identities = 54/228 (23%), Positives = 74/228 (32%), Gaps = 76/228 (33%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
D G G I VDTG+ +HP A G G
Sbjct: 25 DIAEGSGAKIAIVDTGVQSNHPDLA-------------GKVVGG---------------- 55
Query: 210 FFSAGAQAVATLNTSVDFLS----PFDAVGHGSHVASTAA--GNAGVPVVVDGFFYGLAS 263
DF+ P + GHG+H A AA N +
Sbjct: 56 ---------------WDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIA---------- 90
Query: 264 GMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIF 322
G AP A I + + + GT V I A G +++LS+G
Sbjct: 91 GTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNS-------GL 143
Query: 323 DVLMLFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAACTTDR 367
+ +A G VV AAGN G +T +Y A+A A+ TD+
Sbjct: 144 QQAVNYAWNKGSVVVAAAGNAG---NTAPNYPAYYSNAIAVAS--TDQ 186
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 43/132 (32%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
S FS+ G DV APG I++ + +A LSGTSM
Sbjct: 190 KSSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSM 226
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
ATPH+AG+A L+ + + I +AI +TA K G +
Sbjct: 227 ATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGTGT------------------YW 266
Query: 664 GSGLVSATRALD 675
G V+A +A+
Sbjct: 267 AKGRVNAYKAVQ 278
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 53/224 (23%), Positives = 74/224 (33%), Gaps = 76/224 (33%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G I +DTG++ +HP G G
Sbjct: 30 SSGQEIAVIDTGVDYTHPDLD-------------GKVIKG-------------------- 56
Query: 214 GAQAVATLNTSVDFLS----PFDAVGHGSHVASTAA--GNAGVPVVVDGFFYGLASGMAP 267
DF+ P D HG+HVA AA N + GMAP
Sbjct: 57 -----------YDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIA----------GMAP 95
Query: 268 CARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLM 326
RI +A+ GTL+D+ AI A G +++ LS+G D + +
Sbjct: 96 NTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTT-------TLENAV 148
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAACTTDR 367
+A G VV AAGN G S+ +A A D+
Sbjct: 149 NYAWNKGSVVVAAAGNNG---SSTTFEPASYENVIAVGA--VDQ 187
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 43/132 (32%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
++ FS+ G DV+APG I + + G +A +SGTSM
Sbjct: 191 LASFSNYGT-------------WVDVVAPGVDIVSTIT----------GNRYAYMSGTSM 227
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDF 663
A+PH+AG+AAL+ I AI TA K G F
Sbjct: 228 ASPHVAGLAALLASQGR--NNIEIRQAIEQTADKISGTG------------------TYF 267
Query: 664 GSGLVSATRALD 675
G +++ A+
Sbjct: 268 KYGRINSYNAVT 279
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 39/222 (17%), Positives = 61/222 (27%), Gaps = 26/222 (11%)
Query: 153 AGEGIVIGFVDTGINPSHPSFANYN--PFEPNISHFSGDCETGPRFPLSSCNGKIVSARF 210
I I +D + + F P + S + + +
Sbjct: 47 GDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKE 106
Query: 211 FSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCAR 270
+AV D H HV ST G PV G+AP R
Sbjct: 107 KEEALEAVIP-----DTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIAPNCR 151
Query: 271 IAVYKAMYPT------VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDV 324
+ V + ++ AID A G +I+ + P T I
Sbjct: 152 VINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFC---RPTQTSEGEEILVQ 208
Query: 325 LMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTD 366
+ + V +V GN + + P +A A D
Sbjct: 209 AIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD 250
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 8e-16
Identities = 29/136 (21%), Positives = 43/136 (31%), Gaps = 37/136 (27%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
FS+ G + T K ++APG +I A L+GTSM
Sbjct: 253 PCHFSNWGGNNT----------KEGILAPGEEILGAQP---------CTEEPVRLTGTSM 293
Query: 604 ATPHIAGIAALIK----QHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNST 659
A P + GI+AL+ Q + +A+ TA D
Sbjct: 294 AAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV--------------VEE 339
Query: 660 HFDFGSGLVSATRALD 675
G V+ A+
Sbjct: 340 PERCLRGFVNIPGAMK 355
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 4e-16
Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 37/145 (25%)
Query: 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAW--------SPVSALDPML 590
G V+ FSSR V APG I + + P
Sbjct: 323 GGTFRVAGFSSRSD-------------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPAT 369
Query: 591 TGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGF 650
G + GTSMA PH+ G+ A++ Q P+ P I + +TA ++ G
Sbjct: 370 NGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------- 421
Query: 651 EITSTYNSTHFDFGSGLVSATRALD 675
D G GLV AL
Sbjct: 422 --------WDHDTGYGLVKLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 1e-14
Identities = 46/245 (18%), Positives = 74/245 (30%), Gaps = 78/245 (31%)
Query: 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRF 196
+G+ Q +W ++ +G I++ VDTG++ +HP
Sbjct: 141 IGVTQQLW-----EEASGTNIIVAVVDTGVDGTHPDLE---------------------- 173
Query: 197 PLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVD 255
G++++ + G+HVA T AA G +V
Sbjct: 174 ------GQVIAGYRPAFD-------EELPAGTDSSYGGSAGTHVAGTIAAKKDGKGIV-- 218
Query: 256 GFFYGLASGMAPCARIAVYKAMYPTV-------GTLADVIAAIDQATMDGVDILTLSIGP 308
G+AP A+I V A I AT G ++ S G
Sbjct: 219 --------GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGG 270
Query: 309 DEPP---RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAVAAAA 362
++ +A GV +V +AGN Y P + AA
Sbjct: 271 WGYSYTMKEAFD----------YAMEHGVVMVVSAGNNTSDSH--HQYPAGYPGVIQVAA 318
Query: 363 CTTDR 367
D
Sbjct: 319 --LDY 321
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 53/249 (21%), Positives = 81/249 (32%), Gaps = 72/249 (28%)
Query: 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRF 196
+ P VW+ G I + +DTG++ HP A
Sbjct: 15 VKAPS-VWSITDGS---VSVIQVAVLDTGVDYDHPDLA---------------------- 48
Query: 197 PLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST-AAGNAGVPVVVD 255
I G S D GHG+HV T AA N + VV
Sbjct: 49 ------ANIAWCVSTLRG-------KVSTKLRDCADQNGHGTHVIGTIAALNNDIGVV-- 93
Query: 256 GFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPR- 313
G+AP +I + + G+ +D+ I+QA + +
Sbjct: 94 --------GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDP 145
Query: 314 -----DTITM-LG------IFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY---SPWAV 358
+ I+M LG +++ A AG+ +V A+GN+G SY P +
Sbjct: 146 DDDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGA---PSPSYPAAYPEVI 202
Query: 359 AAAACTTDR 367
A A D
Sbjct: 203 AVGA--IDS 209
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 30/133 (22%)
Query: 544 VSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603
++ FS+R P+ V APG I + + ++ L GT+M
Sbjct: 213 IASFSNRQPE---------------VSAPGVDILSTY----------PDDSYETLMGTAM 247
Query: 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIM-AEGFEITSTYNSTHFD 662
ATPH++G+ ALI+ ++ +K G L + A+ T
Sbjct: 248 ATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD---- 303
Query: 663 FGSGLVSATRALD 675
+G G+V A A+
Sbjct: 304 YGYGVVRAALAVQ 316
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 1e-15
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 39/149 (26%)
Query: 527 AGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL 586
A + + R S G ++ D+ APG I
Sbjct: 219 AALAQYRKGETPVLHGGGITGSRFGNNW------------VDIAAPGQNITFLRP----- 261
Query: 587 DPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIM 646
SGTS AT ++G+ A + NP T T + + +A KY +
Sbjct: 262 -----DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK-- 314
Query: 647 AEGFEITSTYNSTHFDFGSGLVSATRALD 675
+++A +A+
Sbjct: 315 ---------------VTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 5e-14
Identities = 27/223 (12%), Positives = 56/223 (25%), Gaps = 60/223 (26%)
Query: 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRF 196
+GL + + +V+ VD+G+
Sbjct: 30 IGLTETTMSLTDK----NTPVVVSVVDSGVAFIGG------------------------- 60
Query: 197 PLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDG 256
+ + F+ + HG+ +AS A G+
Sbjct: 61 ----LSDSEFAKFSFTQD-------GSPFPVKKSEALYIHGTAMASLIASRYGI------ 103
Query: 257 FFYGLASGMAPCARIAVYKAM----YPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPP 312
G+ P A I+ + + + + I + I+ +S G
Sbjct: 104 ------YGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVA 157
Query: 313 RDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSP 355
++ + R +V A GN G + +
Sbjct: 158 SASVWTELLSR----MGRNNDRLIVAAVGNDGADIRKLSAQQR 196
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG QI +AW + +SGTSMATPH+AG+AAL Q N TP +
Sbjct: 196 DLFAPGSQIKSAWY----------DGGYKTISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 628 ASAISSTATK 637
++S A++
Sbjct: 246 TGLLNSRASE 255
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 75/232 (32%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
G G+ +DTG+N +H F
Sbjct: 24 ANFDGFGVTAYVIDTGVNNNHEEF------------------------------------ 47
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
G ++V+ + + D GHG+HVA T G+ G+A
Sbjct: 48 ----GGRSVSGYDFVDNDADSSDCNGHGTHVAGTIGGS--------------QYGVAKNV 89
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGV--DILTLSIGPDEPPRDTITMLGIFDVLM 326
I + + + GT + VI+ +D + + +S+G + D +
Sbjct: 90 NIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQST--------ALDSAV 141
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
A ++GV + AAGN SP A + T +D S
Sbjct: 142 QGAIQSGVSFMLAAGNSNADACN---TSP-ARVPSGVTVGSTTSSDSRSSFS 189
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 47/257 (18%), Positives = 78/257 (30%), Gaps = 61/257 (23%)
Query: 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFAN---YNPFEPNISHFSG 188
+ + + VW G+ +V+ VDTGI H + S S
Sbjct: 14 FDRYGVKADK-VWDMGFT----GQNVVVAVVDTGIL-HHRDLNANVLPGYDFISNSQISL 67
Query: 189 DCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST--AAG 246
D +G+ A D+ HGSHVA T A
Sbjct: 68 DG-----------DGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVT 116
Query: 247 NAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMD--------- 297
N + V G+A A++ +A+ G +D+ + A
Sbjct: 117 NNRIGVA----------GVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENR 166
Query: 298 -GVDILTLSIG----PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVS 352
++ +S+G + I A R G VV AAGN+ + +
Sbjct: 167 NPAKVINMSLGSDGQCSYNAQTMID----------RATRLGALVVVAAGNEN--QNASNT 214
Query: 353 Y---SPWAVAAAACTTD 366
+ ++ A T+
Sbjct: 215 WPTSCNNVLSVGATTSR 231
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 37/135 (27%)
Query: 545 SRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMA 604
+ FS+ G D+ APG I + P+ ++ ++GTSMA
Sbjct: 235 ASFSNYGV-------------DVDLAAPGQDILSTV-DSGTRRPVSDA--YSFMAGTSMA 278
Query: 605 TPHIAGIAALIKQH----NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTH 660
TPH++G+AAL+ N + TP + + ST + +
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSP--------------FNGRLDRA- 323
Query: 661 FDFGSGLVSATRALD 675
GSG+V A A++
Sbjct: 324 --LGSGIVDAEAAVN 336
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG I ++W + +SGTSMA+PH+AG+AAL NP+ +P +
Sbjct: 198 DIYAPGSSITSSWY--------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 628 ASAISSTATK 637
+ + + AT
Sbjct: 250 TNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 47/232 (20%), Positives = 72/232 (31%), Gaps = 75/232 (32%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
G G+ +DTG+ +H F
Sbjct: 26 TDYDGSGVTAFVIDTGVLNTHNEF------------------------------------ 49
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
G +A + + + D GHG+HVA T G+ G+A
Sbjct: 50 ----GGRASSGYDFIDNDYDATDCNGHGTHVAGTIGGS--------------TYGVAKNV 91
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGV--DILTLSIGPDEPPRDTITMLGIFDVLM 326
+ + + + G+ + VIA I+ + + +S+G D +
Sbjct: 92 NVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQ--------ATDDAV 143
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
A AG+ V AAGN S +YSP A AA A T D S
Sbjct: 144 NAAVAAGITFVVAAGNDN---SNACNYSP-ARAADAITVGSTTSNDSRSSFS 191
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFA--LLSGTSMATPHIAGIAALIKQHNPSWTPT 625
D+ APG I A S C+ SGTS A H+AGIAA++ P T
Sbjct: 208 DLFAPGEDIIGASS----------DCSTCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLA 257
Query: 626 MIASAISSTATK 637
+ + + K
Sbjct: 258 ELRQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 6e-11
Identities = 33/222 (14%), Positives = 58/222 (26%), Gaps = 66/222 (29%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
+ G + + +DT I H R
Sbjct: 21 PPDGGSLVEVYLLDTSIQSDHREIEG---------------------------------R 47
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
+ V + + HG+H+A +G +G+A A
Sbjct: 48 VMVTDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGR--------------DAGVAKGA 93
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITM-LG-----IF 322
+ + + GT++ + ++ + + L +
Sbjct: 94 SMRSLRVLNCQGKGTVSGTLIGLEFIRKS--------QLVQPVGPLVVLLPLAGGYSRVL 145
Query: 323 DVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT 364
+ RAGV +V AAGN YSP A A T
Sbjct: 146 NAACQRLARAGVVLVTAAGNFRDDACL---YSP-ASAPEVIT 183
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 12/72 (16%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFA--LLSGTSMATPHIAGIAALIKQHNPSWTPT 625
D+ APG I +AW + A L+GTSMATPH+AG+AAL + NPS TP
Sbjct: 196 DLFAPGASIPSAWY----------TSDTATQTLNGTSMATPHVAGVAALYLEQNPSATPA 245
Query: 626 MIASAISSTATK 637
+ASAI + AT
Sbjct: 246 SVASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 47/232 (20%), Positives = 70/232 (30%), Gaps = 77/232 (33%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
G G+ + +DTGI +H F G+
Sbjct: 26 YTATGRGVNVYVIDTGIRTTHREF----------------------------GGRA---- 53
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
G A+ D GHG+HVA T G G+A
Sbjct: 54 --RVGYDALGGNGQ--------DCNGHGTHVAGTIGGV--------------TYGVAKAV 89
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGVD--ILTLSIGPDEPPRDTITMLGIFDVLM 326
+ + + G+ + VIA +D T + + +S+G D +
Sbjct: 90 NLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVST--------ALDNAV 141
Query: 327 LFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
+ AGV AAGN + +YSP A A A T +D S
Sbjct: 142 KNSIAAGVVYAVAAGNDN---ANACNYSP-ARVAEALTVGATTSSDARASFS 189
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ APG I + W G +SGTSMATPHIAG+AA + + +
Sbjct: 201 DIFAPGTSITSTWI----------GGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAM 249
Query: 628 ASAISSTATK 637
I + +TK
Sbjct: 250 CGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 3e-10
Identities = 49/236 (20%), Positives = 75/236 (31%), Gaps = 81/236 (34%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
D +AG G + +DTG+ +HP F G+ +
Sbjct: 27 DTSAGAGACVYVIDTGVEDTHPDF----------------------------EGRAKQIK 58
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
+++ A+ D GHG+H A T G+A
Sbjct: 59 SYASTAR---------------DGHGHGTHCAGTIGSK--------------TWGVAKKV 89
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITM-LG-----IF 322
I K + + G+L+++IA +D D + P R +M LG
Sbjct: 90 SIFGVKVLDDSGSGSLSNIIAGMDFVASDRQS-------RNCPRRTVASMSLGGGYSAAL 142
Query: 323 DVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
+ + +GVFV AAGN + SP A CT D S
Sbjct: 143 NQAAARLQSSGVFVAVAAGNDN---RDAANTSP-ASEPTVCTVGATDSNDVRSTFS 194
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 568 DVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
D+ PG I + W G + +SGTSMATPH+AG+AA + + T
Sbjct: 200 DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTLGKT-TAASA 248
Query: 628 ASAISSTATK 637
I+ TA K
Sbjct: 249 CRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 47/236 (19%), Positives = 73/236 (30%), Gaps = 81/236 (34%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209
D++AG+G + +DTGI SHP F G+ +
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEF----------------------------EGRAQMVK 57
Query: 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA 269
+ ++ D GHG+H A T G+A
Sbjct: 58 TYYYSSR---------------DGNGHGTHCAGTVGSR--------------TYGVAKKT 88
Query: 270 RIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITM-LG-----IF 322
++ K + G + +IA +D D + + P ++ LG
Sbjct: 89 QLFGVKVLDDNGSGQYSTIIAGMDFVASDKNN-------RNCPKGVVASLSLGGGYSSSV 141
Query: 323 DVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT------TDRIYPGS 372
+ + +GV V AAGN YSP A + CT DR S
Sbjct: 142 NSAAARLQSSGVMVAVAAGNNNADARN---YSP-ASEPSVCTVGASDRYDRRSSFS 193
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 46/283 (16%), Positives = 74/283 (26%), Gaps = 77/283 (27%)
Query: 115 PQVKLVERDRRAKLMTSYT-PQFL---GLPQGVWTQRGGDKNA---------GEGIVIGF 161
P + + A+ S P F L G D N G G+V
Sbjct: 3 PMDSSLLPVKEAEDKLSINDPLFERQWHLVNPS--FPGSDINVLDLWYNNITGAGVVAAI 60
Query: 162 VDTGINPSHPSFA-NYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVAT 220
VD G++ + N+ S D P
Sbjct: 61 VDDGLDYENEDLKDNFCA------EGSWDFNDNTNLPKP--------------------- 93
Query: 221 LNTSVDFLSPFDAVGHGSHVAST--AAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMY 278
HG+ A A V G+ A+I+ + +
Sbjct: 94 ---------RLSDDYHGTRCAGEIAAKKGNNFCGV----------GVGYNAKISGIRILS 134
Query: 279 PTVGTLADVIAAIDQATMDGVDILTLSIGPDEP-----PRDTITMLGIFDVLMLFARRAG 333
T D A++ D DI + S GP + + + + G
Sbjct: 135 -GDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKG 192
Query: 334 VFVVQAAGNQGPAPSTVVSY-----SPWAVAAAACTTDRIYPG 371
V A+GN G +Y S +++ A ++P
Sbjct: 193 AIYVFASGNGG-TRGDNCNYDGYTNSIYSITIGAIDHKDLHPP 234
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-07
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 599 SGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNS 658
GTS A P AG+ L+ + NP+ T + +A + + ++
Sbjct: 269 GGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLE----KNADGDWRDSAMGKK 324
Query: 659 THFDFGSGLVSATRALDP 676
+G G + A + ++
Sbjct: 325 YSHRYGFGKIDAHKLIEM 342
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 27/170 (15%), Positives = 47/170 (27%), Gaps = 17/170 (10%)
Query: 599 SGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNS 658
+GTS + P AGI AL + N + T + + T+ +
Sbjct: 258 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNAD-----DWATNGVGRK 312
Query: 659 THFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPA 718
+G GL+ A + + + L + + + L P
Sbjct: 313 VSHSYGYGLLDAGAMVALAQNWTTVAPQRKCIVEILVEPKDIGKRLEVRKAVTACLGEPN 372
Query: 719 NLN-LPSVTVSAVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPP 767
++ L V +L S P GT +L
Sbjct: 373 HITRLEHVQARLTLSYNRR--------GDLAIHLIS---PMGTRSTLLAA 411
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 59/224 (26%)
Query: 154 GEGIVIGFVDTGINPSHPSFA-NYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFS 212
G GIV+ +D GI +HP A NY+P S D + P+
Sbjct: 37 GHGIVVSILDDGIEKNHPDLAGNYDP---GASFDVNDQDPDPQ----------------- 76
Query: 213 AGAQAVATLNTSVDFLSPFDAVGHGSHVAST--AAGNAGVPVVVDGFFYGLASGMAPCAR 270
+ + HG+ A A N GV V G+A AR
Sbjct: 77 -------------PRYTQMNDNRHGTRCAGEVAAVANNGVCGV----------GVAYNAR 113
Query: 271 IAVYKAMYPTVGTLADVIAAIDQ-ATMDGVDILTLSIGPDEPPR-----DTITMLGIFDV 324
I + + G + D + A + + I + S GP++ + + F
Sbjct: 114 IGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRG 170
Query: 325 LMLFARRAGVFVVQAAGNQGPAPSTV----VSYSPWAVAAAACT 364
+ G V A+GN G + + S + ++ ++ T
Sbjct: 171 VSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 5e-08
Identities = 102/695 (14%), Positives = 184/695 (26%), Gaps = 202/695 (29%)
Query: 47 HGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPT 106
H D F+ Y+ + IL + ++ + K + L+
Sbjct: 5 HHMD----FETGEHQYQ---------YKDILSVFED--AFVDNFDCKDVQDMPKSILSKE 49
Query: 107 QAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGI 166
+ + + V R WT + E +V FV+ +
Sbjct: 50 EIDHIIMSKDA--VSGTLRL----------------FWTLL----SKQEEMVQKFVEEVL 87
Query: 167 NPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVD 226
++ + E R L N V A++ + Q L ++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 227 FLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLA- 285
L P A N V++DG + K T +A
Sbjct: 146 ELRP--------------AKN----VLIDG--------VLGSG-----K----TW--VAL 168
Query: 286 DVIAAID-QATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQG 344
DV + Q MD I L++ P + ML L + +
Sbjct: 169 DVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEML-----QKLLYQ------IDPNWTSR 216
Query: 345 PAPSTVVSYSPWAVAAAACT--TDRIYPGSLLLGNGLKLGGVGLSGPTCGRPL-FLSK-L 400
S+ + ++ A + Y LL+ L V K L
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNV--QNAKAWNAFNLSCKIL 269
Query: 401 VLARD--VILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458
+ R V ++ T +I + P + +L
Sbjct: 270 LTTRFKQVTDFLSAA---TTTHISLDHHSMTLTPD-----------------EVKSL--- 306
Query: 459 INTAITLGFMGFILIANSHYGDFVAEPI---PFAVPGI---LIPKVSTSEIILQYYEQQT 512
+ + D E + P + I + ++T + ++
Sbjct: 307 -----------LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD----NWKHVN 351
Query: 513 HRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAP 572
D+ I+ +S P R F LS V P P
Sbjct: 352 C-DKLTTIIE------------SSLNVLEPAEYR-----KMFDRLS-----VFPPSAHIP 388
Query: 573 GHQIWAAWSPVSALDPM--LTGC-NFALLSGTS-MATPHIAGIAALIKQHNPSWTPTMIA 628
+ W V D M + ++L+ +T I I +K + +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHR 447
Query: 629 SAISS------------TATKYDNY-----G-QLIMAEGFEITSTYNSTHFDFG---SGL 667
S + D Y G L E E + + DF +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 668 VSATRALD-PGLVLSV--EFEDYISFLCSLADSDP 699
+ A + G +L+ + + Y ++C D+DP
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYIC---DNDP 539
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 76/566 (13%), Positives = 140/566 (24%), Gaps = 196/566 (34%)
Query: 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARR-AGVFVVQA-------------AGNQGP 345
I+ + T+ +F L+ FV + + P
Sbjct: 53 HII------MSKDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 346 APST-------------VVSYSPWAVAAAACTTDRIYPGSLLLGNGL-KL---GGVGLSG 388
+ T ++ + V+ R+ P L L L +L V + G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVS-------RLQP-YLKLRQALLELRPAKNVLIDG 157
Query: 389 -PTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDG 447
G K +A DV V C
Sbjct: 158 VLGSG------KTWVALDV----------------------------CLSYKVQCKMDFK 183
Query: 448 FY----NQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEI 503
+ ++ V+ L + + N + I + S
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLY---QIDPNWTSRSDHSSNIK-------LRIHSIQAE 233
Query: 504 ILQYYEQQTHRDE----RGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTD-LS 558
+ + + + + + V NA+A +F I+ ++R TD LS
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQ---NAKA------WNAFNLSCKIL--LTTRFKQVTDFLS 282
Query: 559 RNPTDVLKPDVIAPG------HQIWAAW--SPVSALDPMLTGCNFALLSGTSMATP-HIA 609
T + D + + + L + N P ++
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----------PRRLS 331
Query: 610 GIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVS 669
IA I+ +W K+ N +L I S+ N
Sbjct: 332 IIAESIRDGLATWDN-----------WKHVNCDKLTTI----IESSLN------------ 364
Query: 670 ATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSA 729
L+P E+ L S + + IW ++ V
Sbjct: 365 ---VLEPA-----EYRKMFDRLSVFPPSAHIPTILLSLIWF----------DVIKSDVMV 406
Query: 730 VAKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAI------QF 783
V L + SL K T + S+Y + + + A+ +
Sbjct: 407 VVNKLH-KYSLVEKQPKESTI---SIP------SIY---LELKVKLENEYALHRSIVDHY 453
Query: 784 NVTQAIGDFSFGEIVLTG-SLNHIVR 808
N+ + L +HI
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGH 479
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 63 KGQTKRLMDSHDRILQSTLEIGSY--NKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLV 120
+ + R LQ+ Y L+ F + GF V ++ + P V +
Sbjct: 46 EETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 105
Query: 121 ERDRRAK 127
E D
Sbjct: 106 EEDSSVF 112
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 1e-04
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 63 KGQTKRLMDSHDRILQSTLEIGSYNK--LYSFKYTVNGFAVHLTPTQAKKLENAPQVKLV 120
+ + R LQ+ Y L+ F + GF V ++ + P V +
Sbjct: 56 EETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYI 115
Query: 121 ERDR 124
E D
Sbjct: 116 EEDS 119
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B Length = 80 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 2e-04
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 96 VNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYT 133
V+ + L ++L+ P V VE D+ + +++ +
Sbjct: 43 VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSATS 80
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.86 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.93 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.78 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.72 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.53 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.41 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.98 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.09 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 96.75 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 94.99 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 93.1 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 92.91 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 91.07 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.75 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 88.67 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 88.21 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 87.52 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 87.17 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 85.53 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 83.84 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 82.49 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-109 Score=970.74 Aligned_cols=623 Identities=31% Similarity=0.482 Sum_probs=534.1
Q ss_pred ccCCCCccCCCc--ccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCC-CCCCccccCCCCCCCCCCCceE
Q 003446 130 TSYTPQFLGLPQ--GVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNIS-HFSGDCETGPRFPLSSCNGKIV 206 (819)
Q Consensus 130 ~~~~~~~~g~~~--~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~~n~ki~ 206 (819)
++++|+|+|++. .+|.. +++|+||+|||||||||++||+|.+. ++.+++ .|++.|+.|.+|....||+|++
T Consensus 1 Tt~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~--g~~p~p~~wkg~c~~g~~f~~~~cN~kii 74 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDD--GMPEIPKRWKGICKPGTQFNASMCNRKLI 74 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCT--TCCCCCTTCCCCBCCBTTBCTTSCCSSEE
T ss_pred CCCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccC--CCCCCccccccccccCcccccccccccee
Confidence 367888999873 58887 68999999999999999999999987 556666 9999999999999999999999
Q ss_pred EEEEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHH
Q 003446 207 SARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLAD 286 (819)
Q Consensus 207 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~ 286 (819)
++++|.++..... .+...+..+++|.+||||||||||||+...+.+..|+..+.+.||||+|+|++||+++..|+..++
T Consensus 75 g~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~ 153 (649)
T 3i6s_A 75 GANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSD 153 (649)
T ss_dssp EEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHH
T ss_pred eeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHH
Confidence 9999997654332 333445567889999999999999999887777778888889999999999999999988899999
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEcccccc
Q 003446 287 VIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTD 366 (819)
Q Consensus 287 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~ 366 (819)
+++||+||+++|+||||||||+... ..+.+.++.++++|.++||+||+||||+|+...++++.+||+|+|||++.+
T Consensus 154 i~~Ai~~A~~~gvdVIn~SlG~~~~----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~d 229 (649)
T 3i6s_A 154 LIAAMDQAVADGVDMISISYGYRFI----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTD 229 (649)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSC----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECS
T ss_pred HHHHHHHHHHcCCCEEEeCCccCCc----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecc
Confidence 9999999999999999999998632 346689999999999999999999999999999999999999999999999
Q ss_pred ceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCcc--CceEEEEEe
Q 003446 367 RIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLV--QGSVVICTF 444 (819)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~--~Gkiv~~~~ 444 (819)
|.|+..+.+++++++.+.++++.... ...||+++.. ....|.. ..++...+ +||||+|.|
T Consensus 230 r~f~~~~~lgng~~~~g~sl~~~~~~--~~~~plv~~~---------------~~~~C~~-~~l~~~~vdl~GkIvlc~~ 291 (649)
T 3i6s_A 230 RTFAGTLTLGNGLKIRGWSLFPARAF--VRDSPVIYNK---------------TLSDCSS-EELLSQVENPENTIVICDD 291 (649)
T ss_dssp CEEEEEEEETTSCEEEEECCCSSCBC--EEEEEEECCT---------------TTTTCCC-HHHHTTSSSGGGCEEEECC
T ss_pred cceeeEEEeCCCcEEeeeecccCccc--CcceeeEecc---------------ccccccc-ccccccccccCCcEEEEeC
Confidence 99999999999999999998876543 3789998854 2356863 34556666 999999998
Q ss_pred cCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeec
Q 003446 445 SDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFN 524 (819)
Q Consensus 445 ~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 524 (819)
|.+.+.+|..+++++||.|+|++|+. .......+.+|.+++ +.++++.|++|+++....
T Consensus 292 ------g~~~~~~k~~~~~~~Ga~g~i~~n~~----~~~~~~~~~~P~~~v-~~~~g~~i~~yi~s~~~~---------- 350 (649)
T 3i6s_A 292 ------NGDFSDQMRIITRARLKAAIFISEDP----GVFRSATFPNPGVVV-NKKEGKQVINYVKNSVTP---------- 350 (649)
T ss_dssp ------CSCHHHHHHHHHHHTCSEEEEECCCG----GGGGCCCCCSCEEEE-CHHHHHHHHHHHHTCSSC----------
T ss_pred ------CCccHHHHHHHHHhcCceEEEEecCc----cccccccCcCCEEEE-cHHHHHHHHHHHhcCCCc----------
Confidence 57788999999999999999999987 233456678999888 688999999999886532
Q ss_pred eeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCc----CCCcceeccc
Q 003446 525 AQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPML----TGCNFALLSG 600 (819)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sG 600 (819)
++++....+.......+.++.||||||+.+ .++++||||+|||++|+|+|+......... ....|..+||
T Consensus 351 -~a~i~~~~t~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SG 424 (649)
T 3i6s_A 351 -TATITFQETYLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESG 424 (649)
T ss_dssp -EEEEEEEEEECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECS
T ss_pred -eEEEeecceeeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccc
Confidence 344444444445567899999999999986 468999999999999999998643211100 1258999999
Q ss_pred ccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCCCeEE
Q 003446 601 TSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVL 680 (819)
Q Consensus 601 TSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~~lv~ 680 (819)
||||||||||+||||||+||+|+|++||++||+||.+++..+.|+.+.. ...++++++||+|+||+.+|++|+|||
T Consensus 425 TSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~----~~~~a~~~~~GaG~vn~~~A~~pGLvy 500 (649)
T 3i6s_A 425 TSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD----NNKAATPLDMGAGHVDPNRALDPGLVY 500 (649)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT----TSSBCCHHHHTTCBCCHHHHTCCSEEC
T ss_pred cccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc----cCCcCCcCCCCeeeeCHHHhcCccccc
Confidence 9999999999999999999999999999999999999999999987653 456788999999999999999999999
Q ss_pred eccchhhHHhhhccCCCCccceeeccccc----cccCCCCCCCCCCCcEEEec-ccce-----EEEEEEEEEecCCceeE
Q 003446 681 SVEFEDYISFLCSLADSDPVSIKAATGIW----CNHSLSHPANLNLPSVTVSA-VAKS-----LILQRSLKNVGNKTETY 750 (819)
Q Consensus 681 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ln~ps~~~~~-~~~~-----~~~~~tv~N~g~~~~ty 750 (819)
|.+.+||+.|||++++ +..+|+.+++.. |+. .+.+||||||++.. +.+. ++|+|||||+|....+|
T Consensus 501 d~~~~dy~~flc~~~y-~~~~i~~~~~~~~~~~C~~---~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y 576 (649)
T 3i6s_A 501 DATPQDYVNLLCSLNF-TEEQFKTIARSSASHNCSN---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATY 576 (649)
T ss_dssp CCCHHHHHHHHHTTCC-CHHHHHHHHTTTSCC-CCC---CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEE
T ss_pred cCCchhHHHhhhcCCC-CcccceeeecCCCcCCCCC---chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEE
Confidence 9999999999999998 888888887753 875 57899999999987 5666 89999999999989999
Q ss_pred EEEEeCCCCceEEEeCCeEEEe-CCcEEEEEEEEEEecC-CCCeEEEEEEEEeC-CccEEEEeEEEEee
Q 003446 751 LTSVVHPNGTTVSLYPPWFTIA-PQGTQDLAIQFNVTQA-IGDFSFGEIVLTGS-LNHIVRIPLSVKPV 816 (819)
Q Consensus 751 ~~~~~~~~g~~v~~~p~~~tv~-~g~~~~~~v~~~~~~~-~~~~~~G~i~~~~~-~~~~l~~P~~~~~~ 816 (819)
+++++.|.|++|+|+|++|+|. .||+++|+|+|+.... .+.|.||+|+|+++ +.|.||+|++|++.
T Consensus 577 ~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 577 KAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999999999999999996 7999999999998744 45688999999974 67999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-101 Score=909.69 Aligned_cols=612 Identities=31% Similarity=0.496 Sum_probs=488.7
Q ss_pred ccCCCCccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCC-CCCCccccCCCCCCCCCCCceEEE
Q 003446 130 TSYTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNIS-HFSGDCETGPRFPLSSCNGKIVSA 208 (819)
Q Consensus 130 ~~~~~~~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~-~~~~~~~~g~~~~~~~~n~ki~g~ 208 (819)
++++|+|+|+++..|.+ ..+|+||+|||||||||++||+|++. ++.+++ .|++.|+.+.+| .||+|++++
T Consensus 1 tt~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~--g~~~~~~~w~g~~~~~~~~---~~n~k~ig~ 71 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDE--GFSPPPPKWKGTCETSNNF---RCNRKIIGA 71 (621)
T ss_dssp CCSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCT--TCCCCCTTCCCCBCCSSSC---CCCSSEEEE
T ss_pred CCCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCC--CCCCcccccccccccCCCc---ccCcceeee
Confidence 46789999999877876 57899999999999999999999875 444444 999999998877 499999999
Q ss_pred EEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHH
Q 003446 209 RFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVI 288 (819)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~ 288 (819)
++|..+.. ....+..+|+|++||||||||||||+...+....|...+.++||||+|+|++||+|++.|+..++++
T Consensus 72 ~~~~~~~~-----~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~ 146 (621)
T 3vta_A 72 RSYHIGRP-----ISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDIL 146 (621)
T ss_dssp EECCCSSS-----CCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHH
T ss_pred eecccCCc-----cCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHH
Confidence 99986521 1223446788999999999999999987777777777788899999999999999999888899999
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccce
Q 003446 289 AAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRI 368 (819)
Q Consensus 289 ~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~ 368 (819)
+||+||+++|+||||||||+..+. ....++++.++++|+++||+||+||||+|+...++++.+||+++|++++.++.
T Consensus 147 ~a~~~a~~~g~dVin~SlG~~~~~---~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~ 223 (621)
T 3vta_A 147 AAYDDAIADGVDIISLSVGGANPR---HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRK 223 (621)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCGG---GGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEE
T ss_pred HHHHHHHHhCCCEEEecCCCCCCC---CcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccc
Confidence 999999999999999999986543 34567899999999999999999999999999999999999999999999999
Q ss_pred eeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCc
Q 003446 369 YPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGF 448 (819)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~ 448 (819)
+...+.++++..+.+.++.... ...++++...+... ... .......|. ...++...++|||++|.++
T Consensus 224 ~~~~~~~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~~~~~~~v~gkivl~~~~--- 290 (621)
T 3vta_A 224 FVTQVQIGNGQSFQGVSINTFD----NQYYPLVSGRDIPN-TGF----DKSTSRFCT-DKSVNPNLLKGKIVVCEAS--- 290 (621)
T ss_dssp EEEEEEETTSCEEEEBCCCCSC----CEEECEEETTTSCC-TTC----CHHHHTTTC-TTCSCGGGTTTSEEECSSC---
T ss_pred ceeeEEeccCceeeeeecccCC----Cccccccccccccc-ccc----ccccccccc-ccccccccccceEEEEecC---
Confidence 9999999999999988776543 25677776554332 000 012334454 4567788899999999874
Q ss_pred cCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeee
Q 003446 449 YNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAG 528 (819)
Q Consensus 449 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (819)
+..+..+....|+.++|++++... ....+.+|...+ ..+++..++.|+...... .+.
T Consensus 291 ------~~~~~~~~~~~Ga~gvi~~~~~~~-----~~~~~~lP~~~v-~~~~g~~i~~~~~~~~~~-----------~a~ 347 (621)
T 3vta_A 291 ------FGPHEFFKSLDGAAGVLMTSNTRD-----YADSYPLPSSVL-DPNDLLATLRYIYSIRSP-----------GAT 347 (621)
T ss_dssp ------CCHHHHHHHHTTCSEEEEECSCCS-----SCCCCSSSEEEE-CHHHHHHHHHHHHHHSSC-----------CEE
T ss_pred ------CChhHHhhhhcceeEEEEEecCCC-----cccccccceEEE-CHHHHHHHHHHHhccCCc-----------ceE
Confidence 335566778899999999987642 234567898877 678889999998875432 112
Q ss_pred eccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHH
Q 003446 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHI 608 (819)
Q Consensus 529 ~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 608 (819)
+... ........+.++.||||||+.. .++++||||+|||++|+|+|+..........+..|..+||||||||||
T Consensus 348 ~~~~-~~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhV 421 (621)
T 3vta_A 348 IFKS-TTILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHI 421 (621)
T ss_dssp ECCC-EEEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHH
T ss_pred Eecc-eEeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhh
Confidence 2111 2223456789999999999875 357999999999999999998655433333456899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCCCeEEeccchhhH
Q 003446 609 AGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYI 688 (819)
Q Consensus 609 AG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~~lv~d~~~~~~~ 688 (819)
||+||||||+||+|+|++||++||+||++++..+. ++.+++||+|+||+.+|++|+||||...+||+
T Consensus 422 AGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~-------------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~ 488 (621)
T 3vta_A 422 TGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN-------------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYV 488 (621)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTC-------------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC
T ss_pred hhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCC-------------CCCchhcCCCccCHHHhcCCCeEeecccchhh
Confidence 99999999999999999999999999998876544 45678999999999999999999999999999
Q ss_pred HhhhccCCCCccceeeccc--cccccC-CCCCCCCCCCcEEEe---cccceEEEEEEEEEecCCceeEEEEEeCCCCceE
Q 003446 689 SFLCSLADSDPVSIKAATG--IWCNHS-LSHPANLNLPSVTVS---AVAKSLILQRSLKNVGNKTETYLTSVVHPNGTTV 762 (819)
Q Consensus 689 ~~~~~~~~~~~~~i~~~~~--~~~~~~-~~~~~~ln~ps~~~~---~~~~~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v 762 (819)
.|||++++ +..+++.+++ ..|+.. .....+||||||++. ++..+++++|||||+|....||+++++.|.|++|
T Consensus 489 ~~lc~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v 567 (621)
T 3vta_A 489 KFLCGQGY-NTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTI 567 (621)
T ss_dssp ------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEE
T ss_pred hhhcccCC-CchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEE
Confidence 99999988 7788877765 346543 455689999999985 4566789999999999999999999999999999
Q ss_pred EEeCCeEEEe-CCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEeEEEEee
Q 003446 763 SLYPPWFTIA-PQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIPLSVKPV 816 (819)
Q Consensus 763 ~~~p~~~tv~-~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~~P~~~~~~ 816 (819)
+|+|++|+|+ .||+++|+|+|+.. ..+.|++|+|+|+ ++.|.||+|++|++.
T Consensus 568 ~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l~w~-d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 568 SVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASLVWS-DGVHYVRSPITITSL 620 (621)
T ss_dssp EEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEEEEE-CSSCCCEEEEEEECC
T ss_pred EEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEEEEE-cCCEEEEeCEEEEEe
Confidence 9999999996 58999999999864 3577999999998 578999999999875
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-80 Score=756.13 Aligned_cols=548 Identities=19% Similarity=0.236 Sum_probs=411.8
Q ss_pred CccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCC----------CCCCCCCCCc
Q 003446 135 QFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGP----------RFPLSSCNGK 204 (819)
Q Consensus 135 ~~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~n~k 204 (819)
++++++. +|.+ +++|+||+|||||||||++||+|.+.. .|++.|..+. ...+.+||+|
T Consensus 2 d~i~~~~-~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~-------~~~~~~~~~~~~~~~~~~~g~~~g~~~n~K 69 (926)
T 1xf1_A 2 DPSQVKT-LQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTD-------KTKARYQSKEDLEKAKKEHGITYGEWVNDK 69 (926)
T ss_dssp CTTCCHH-HHHH----HCSCTTCEEEEEESCCTTCCCCCSCCS-------CCCSSCCHHHHHHHHHHTTTCCCCBCCSSS
T ss_pred CccccHH-HHhc----cCCCCCcEEEEEecCCCCCCHhHcCCC-------CCcccccchhhhcccccccCcccccccCcc
Confidence 3566665 8987 689999999999999999999999642 4555554321 1234589999
Q ss_pred eEEEEEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--C
Q 003446 205 IVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--G 282 (819)
Q Consensus 205 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~ 282 (819)
++++++|.++ ....|..||||||||||||+...+.. + .+.+.||||+|+|+++|++++.+ +
T Consensus 70 ii~~~~~~~~-------------~~~~D~~gHGThVAgiiAg~~~~~~~-~---~~~~~GvAP~A~l~~~kv~~~~g~~~ 132 (926)
T 1xf1_A 70 VAYYHDYSKD-------------GKTAVDQEHGTHVSGILSGNAPSETK-E---PYRLEGAMPEAQLLLMRVEIVNGLAD 132 (926)
T ss_dssp CCEEEESCCC-------------SCCCCSSTTTTHHHHSSCCCCCCCCS-C---SCCTTTTCTTSEEEEEECCCCSCHHH
T ss_pred cceeeccccC-------------CCCCCCCCcHHHHHHHHhCCCccCcc-c---CCceEEECCCCEEEEEEeecCCCCCC
Confidence 9999999764 12228899999999999998643321 1 14578999999999999999876 4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-------------C-
Q 003446 283 TLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-------------S- 348 (819)
Q Consensus 283 ~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-------------~- 348 (819)
..+++++||+||+++|+||||||||+...+. ..+.+.++.+++.|.++||+||+||||+|+.. .
T Consensus 133 ~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~--~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~t 210 (926)
T 1xf1_A 133 YARNYAQAIRDAINLGAKVINMSFGNAALAY--ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGV 210 (926)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSSCCCTT--CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBC
T ss_pred cHHHHHHHHHHHHHhCCcEEEECCCCCCCCc--cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcce
Confidence 5678999999999999999999999864321 23457889999999999999999999999632 1
Q ss_pred -CcccCCcceEEEccccccceeeeeEEe-CCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCC
Q 003446 349 -TVVSYSPWAVAAAACTTDRIYPGSLLL-GNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQY 426 (819)
Q Consensus 349 -~~~~~~p~vitVgAs~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~ 426 (819)
..|+.+||+|+|||++.++.+...+.+ +++....+.++...........||+++... .|.
T Consensus 211 v~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-----------------g~~- 272 (926)
T 1xf1_A 211 VGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-----------------GTK- 272 (926)
T ss_dssp CCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-----------------SCS-
T ss_pred ecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-----------------CCC-
Confidence 234458999999999999999888887 554333333222111111236788887543 354
Q ss_pred CCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHH
Q 003446 427 PEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQ 506 (819)
Q Consensus 427 ~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~ 506 (819)
...+ .+++||||+|.| |.+.+.+|..+++.+||.|+|++|+..............+|..++ +.+++..|.+
T Consensus 273 ~~~~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i-~~~~g~~l~~ 343 (926)
T 1xf1_A 273 EDDF--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFI-SRKDGLLLKD 343 (926)
T ss_dssp TTTT--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEE-CHHHHHHHHH
T ss_pred ccch--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEE-eHHHHHHHHh
Confidence 2233 579999999998 578899999999999999999999875322222345667898887 6677776653
Q ss_pred HHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC
Q 003446 507 YYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL 586 (819)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~ 586 (819)
.. ..+++|.... ........+.++.||||||+.+ +++||||+|||++|+|+++
T Consensus 344 ----~~-----~~ti~~~~~~------~~~~~~~~~~~a~FSSrGp~~~-------~~lKPDI~APG~~I~sa~~----- 396 (926)
T 1xf1_A 344 ----NP-----QKTITFNATP------KVLPTASGTKLSRFSSWGLTAD-------GNIKPDIAAPGQDILSSVA----- 396 (926)
T ss_dssp ----CS-----SCEEEECSSC------EEEECSSCSBCCTTSCCCBCTT-------SCBSCCEEEECCCEEESSS-----
T ss_pred ----CC-----ceEEEecccc------eecccCCcceeccccCCCCCCC-------CccCceEECCCCCEEeecc-----
Confidence 11 1234443222 1122345679999999999975 7999999999999999995
Q ss_pred CCCcCCCcceecccccchhhHHHHHHHHHHH----hCCCCCHHH----HHHHHHhcccccccCCCccccccccccccCCC
Q 003446 587 DPMLTGCNFALLSGTSMATPHIAGIAALIKQ----HNPSWTPTM----IASAISSTATKYDNYGQLIMAEGFEITSTYNS 658 (819)
Q Consensus 587 ~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~~sp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 658 (819)
++.|..+||||||||||||+||||+| .||+|+|+| ||++||+||+++...+. ...+
T Consensus 397 -----~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~-----------~~~~ 460 (926)
T 1xf1_A 397 -----NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDE-----------KAYF 460 (926)
T ss_dssp -----CSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGGG-----------TEEC
T ss_pred -----CCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCCC-----------CccC
Confidence 35899999999999999999999964 599999997 99999999998754321 2346
Q ss_pred CCcccccccccccccCCCCeEEeccchhhHHhhhccCCCCccceeeccccccccCCCCCCCCCCCcEEEecccceEEEEE
Q 003446 659 THFDFGSGLVSATRALDPGLVLSVEFEDYISFLCSLADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSAVAKSLILQR 738 (819)
Q Consensus 659 ~~~~~GaG~vn~~~Al~~~lv~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~ 738 (819)
++++||+|+||+.+|+++.+ |+|..++ . -++|.+.++..+.+++|
T Consensus 461 ~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~-~-----------------------~~~i~l~~~~~~~~~~~ 505 (926)
T 1xf1_A 461 SPRQQGAGAVDAKKASAATM-----------YVTDKDN-T-----------------------SSKVHLNNVSDKFEVTV 505 (926)
T ss_dssp CHHHHTTCBCCHHHHHHCSE-----------EEEESSS-S-----------------------CSCEEEEEECSEEEEEE
T ss_pred ChhccCCCccCHHHhcCCCe-----------EEEcCCC-C-----------------------cceeeccccCccEEEEE
Confidence 78899999999999999865 4565433 0 12455555666788999
Q ss_pred EEEEecCCc--eeEEEEEeC--CCCceEEEe--------CCeEEEeCCcEEEEEEEEEEec---------CCCCeEEEEE
Q 003446 739 SLKNVGNKT--ETYLTSVVH--PNGTTVSLY--------PPWFTIAPQGTQDLAIQFNVTQ---------AIGDFSFGEI 797 (819)
Q Consensus 739 tv~N~g~~~--~ty~~~~~~--~~g~~v~~~--------p~~~tv~~g~~~~~~v~~~~~~---------~~~~~~~G~i 797 (819)
||||+|+++ .+|++.+.. +.+..+++. +.+|||+|||+++|+|+|+++. ..+.|++|+|
T Consensus 506 tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i 585 (926)
T 1xf1_A 506 NVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFV 585 (926)
T ss_dssp EEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEE
T ss_pred EEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEE
Confidence 999999854 567766654 556666554 4579999999999999999862 1346899999
Q ss_pred EEEeCC-cc-EEEEeEEEEeeec
Q 003446 798 VLTGSL-NH-IVRIPLSVKPVSI 818 (819)
Q Consensus 798 ~~~~~~-~~-~l~~P~~~~~~~~ 818 (819)
+|++++ .| .||+||+++.+++
T Consensus 586 ~~~~~~~~~~~v~~P~~~~~g~~ 608 (926)
T 1xf1_A 586 RFKQDPTKEELMSIPYIGFRGDF 608 (926)
T ss_dssp EEESSTTSCCCEEEEEEEEESCG
T ss_pred EEEeCCCCCCEEEeeeEEEecCc
Confidence 999643 34 5999999998764
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-60 Score=545.50 Aligned_cols=336 Identities=31% Similarity=0.493 Sum_probs=272.2
Q ss_pred ccEEEEeeeeeeEEEEEcCHHHHHHH-----------hcCCCceEEEeCccccccccC-----CCCccCCCcccccccCC
Q 003446 86 YNKLYSFKYTVNGFAVHLTPTQAKKL-----------ENAPQVKLVERDRRAKLMTSY-----TPQFLGLPQGVWTQRGG 149 (819)
Q Consensus 86 ~~~~~~~~~~~ng~~~~~~~~~~~~L-----------~~~p~V~~v~~~~~~~~~~~~-----~~~~~g~~~~~w~~~~~ 149 (819)
.++.++|. .|+||+++++.+++++| +++|+|++|+++..+++.... ....++++. +|..
T Consensus 60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 134 (539)
T 3afg_A 60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATN-MWNL--- 134 (539)
T ss_dssp CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSC-CBCC---
T ss_pred CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHh-HHhc---
Confidence 56788885 79999999999999999 899999999999998764321 122344444 7776
Q ss_pred CCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 150 ~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
+++|+||+|||||||||++||+|.++ +++.++|..+ ...
T Consensus 135 -g~~G~gv~VaViDtGid~~Hpdl~~~----------------------------i~~~~d~~~~------------~~~ 173 (539)
T 3afg_A 135 -GYDGSGITIGIIDTGIDASHPDLQGK----------------------------VIGWVDFVNG------------KTT 173 (539)
T ss_dssp -SCCCTTCEEEEEESBCCTTSGGGTTT----------------------------EEEEEETTTC------------CSS
T ss_pred -CCCCCCcEEEEEecCCCCCChHHhCC----------------------------EeeeEECCCC------------CCC
Confidence 78999999999999999999999864 7777777653 135
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC----CCcEEEe
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD----GVDILTL 304 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~ 304 (819)
+.|++||||||||||+|+... ..+.+.||||+|+|+++|++++.| +..+++++||+||+++ |++||||
T Consensus 174 ~~D~~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~ 246 (539)
T 3afg_A 174 PYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINL 246 (539)
T ss_dssp CCBSSSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEE
T ss_pred CCCCCCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEe
Confidence 678999999999999987432 123468999999999999999877 7889999999999975 9999999
Q ss_pred CCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccccccceeeeeEEeCCCeEEe
Q 003446 305 SIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG 382 (819)
Q Consensus 305 SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~ 382 (819)
|||..... ...+.+..+++++.++|++||+||||+|+... ..|+.++++|+|||++.+
T Consensus 247 SlG~~~~~----~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~---------------- 306 (539)
T 3afg_A 247 SLGSSQSS----DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY---------------- 306 (539)
T ss_dssp CCCCCSCC----CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT----------------
T ss_pred CCCCCCCC----ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC----------------
Confidence 99986432 23478899999999999999999999998643 346678899999874210
Q ss_pred eecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHH
Q 003446 383 GVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTA 462 (819)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~ 462 (819)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCC
Q 003446 463 ITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542 (819)
Q Consensus 463 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
+
T Consensus 307 -------------------------------------------------------------------------------~ 307 (539)
T 3afg_A 307 -------------------------------------------------------------------------------D 307 (539)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------c
Confidence 2
Q ss_pred eeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCC
Q 003446 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSW 622 (819)
Q Consensus 543 ~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~ 622 (819)
.++.||||||+.+ +++||||+|||++|+++++...... ......|..++|||||||||||++|||+|+||+|
T Consensus 308 ~~a~fSs~Gp~~~-------~~~kpdi~APG~~I~s~~~~~~~~~-~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~ 379 (539)
T 3afg_A 308 VITDFSSRGPTAD-------NRLKPEVVAPGNWIIAARASGTSMG-QPINDYYTAAPGTAMATPHVAGIAALLLQAHPSW 379 (539)
T ss_dssp CBCSSSCCCCCTT-------CBCCCSEEEECSSEEEECCTTCCCS-EECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccCCCCCCC-------CCCcccEecCcCCEEeeccCCCCCC-CCCcccccccCchHHHHHHHHHHHHHHHHHCCCC
Confidence 4789999999986 6999999999999999986532100 0112369999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 623 TPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 623 sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
+|++||++|++||+++...+ .+++.||+|+||+.+|++.
T Consensus 380 s~~~vk~~L~~tA~~~~~~~---------------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 380 TPDKVKTALIETADIVKPDE---------------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp CHHHHHHHHHHHSBCSSGGG---------------CSBTTTBTCBCCHHHHHTG
T ss_pred CHHHHHHHHHhhCccCCCCC---------------CCccCccCCccCHHHHhhh
Confidence 99999999999998875322 2346799999999999985
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-57 Score=509.12 Aligned_cols=318 Identities=27% Similarity=0.423 Sum_probs=261.0
Q ss_pred cccEEEEeeeeeeEEEEEcCHHHHHHHhcCCCceEEEeCccccccccCC-----------CCc-----cCCCcccccccC
Q 003446 85 SYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYT-----------PQF-----LGLPQGVWTQRG 148 (819)
Q Consensus 85 ~~~~~~~~~~~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~-----------~~~-----~g~~~~~w~~~~ 148 (819)
+.++.++|. .+++|+++++++++++|+++|+|++|+++..+++..... ... ++++. +|..
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~-~w~~-- 98 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPS-VWSI-- 98 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGG-GGGT--
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHH-HHhh--
Confidence 356788886 599999999999999999999999999999987643211 112 23333 6776
Q ss_pred CCCCCCCC--eEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCC
Q 003446 149 GDKNAGEG--IVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVD 226 (819)
Q Consensus 149 ~~~~~G~g--v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~ 226 (819)
+ +|+| |+|||||||||++||+|.++ +..+++|..+.. . .+
T Consensus 99 --~-~G~g~~v~VaViDtGid~~Hp~l~~~----------------------------~~~~~~~~~~~~-----~--~~ 140 (395)
T 2z2z_A 99 --T-DGSVSVIQVAVLDTGVDYDHPDLAAN----------------------------IAWCVSTLRGKV-----S--TK 140 (395)
T ss_dssp --C-SSCCTTCEEEEEESCBCTTCTTTGGG----------------------------EEEEEECGGGCC-----B--CC
T ss_pred --c-CCCCCcEEEEEEcCCCCCCChhHhhc----------------------------cccCccccCCcc-----c--CC
Confidence 4 8999 99999999999999999974 566666654311 0 00
Q ss_pred CCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC--------
Q 003446 227 FLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD-------- 297 (819)
Q Consensus 227 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~-------- 297 (819)
..++.|++||||||||||+|..+ + ..+.||||+|+|+.+|++++.| +..+++++||+||+++
T Consensus 141 ~~~~~d~~gHGT~vAgiia~~~n------~---~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~ 211 (395)
T 2z2z_A 141 LRDCADQNGHGTHVIGTIAALNN------D---IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD 211 (395)
T ss_dssp HHHHBCSSSHHHHHHHHHHCCCS------S---SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHHeecC------C---CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCcccccccc
Confidence 01246789999999999999732 1 2357999999999999999877 7889999999999988
Q ss_pred ------------CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccc
Q 003446 298 ------------GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTT 365 (819)
Q Consensus 298 ------------g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~ 365 (819)
+++|||||||.... ...+..+++++.++|++||+||||+|......|+..+++|+|||++.
T Consensus 212 ~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~ 284 (395)
T 2z2z_A 212 GDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS 284 (395)
T ss_dssp CSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT
T ss_pred ccccccccccCCCCeEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC
Confidence 99999999997532 25788889999999999999999999887788888999999997421
Q ss_pred cceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEec
Q 003446 366 DRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFS 445 (819)
Q Consensus 366 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~ 445 (819)
+
T Consensus 285 ~------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 285 N------------------------------------------------------------------------------- 285 (395)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeece
Q 003446 446 DGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNA 525 (819)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 525 (819)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchh
Q 003446 526 QAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMAT 605 (819)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAa 605 (819)
+.++.||+||| +|+|||++|+|+++ ++.|..++||||||
T Consensus 286 ----------------~~~a~fS~~G~---------------~v~APG~~i~s~~~----------~~~y~~~sGTS~Aa 324 (395)
T 2z2z_A 286 ----------------DNIASFSNRQP---------------EVSAPGVDILSTYP----------DDSYETLMGTAMAT 324 (395)
T ss_dssp ----------------SCBCTTSCSSC---------------SEEEECSSEEEEET----------TTEEEEEESHHHHH
T ss_pred ----------------CCCCcccCCCC---------------CEEeCCCCeeeecC----------CCceEecCCHHHHH
Confidence 34788999997 57999999999984 45899999999999
Q ss_pred hHHHHHHHHHHHhCC-------------CCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccc
Q 003446 606 PHIAGIAALIKQHNP-------------SWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATR 672 (819)
Q Consensus 606 P~VAG~aALl~q~~P-------------~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~ 672 (819)
|||||++|||+|++| .|++.+||++|++||+++...+ .++.||+|+||+.+
T Consensus 325 P~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g----------------~~~~~G~G~vd~~~ 388 (395)
T 2z2z_A 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG----------------WDADYGYGVVRAAL 388 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS----------------SBTTTBTCBCCHHH
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC----------------CCCCccCceeCHHH
Confidence 999999999999999 9999999999999999875332 24679999999999
Q ss_pred cCCC
Q 003446 673 ALDP 676 (819)
Q Consensus 673 Al~~ 676 (819)
|++.
T Consensus 389 A~~~ 392 (395)
T 2z2z_A 389 AVQA 392 (395)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9863
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-55 Score=498.32 Aligned_cols=335 Identities=22% Similarity=0.297 Sum_probs=256.5
Q ss_pred cccEEEEeeeeeeEEEEEcCHHHHHHHhc-CCCceEEEeCccccccccCCC----------CccC-----CCcccccccC
Q 003446 85 SYNKLYSFKYTVNGFAVHLTPTQAKKLEN-APQVKLVERDRRAKLMTSYTP----------QFLG-----LPQGVWTQRG 148 (819)
Q Consensus 85 ~~~~~~~~~~~~ng~~~~~~~~~~~~L~~-~p~V~~v~~~~~~~~~~~~~~----------~~~g-----~~~~~w~~~~ 148 (819)
+.++.++|. .+++|+++++++++++|++ +|+|++|+++..+++...... ..|+ .+..+|..
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~-- 141 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD-- 141 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG--
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc--
Confidence 356677774 5999999999999999999 999999999998877543221 1122 22236665
Q ss_pred CCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCC
Q 003446 149 GDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFL 228 (819)
Q Consensus 149 ~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~ 228 (819)
+++|+||+|||||||||++||+|.++ .|.+.. .++....|... ..+...+..
T Consensus 142 --~~~G~gv~VaViDtGid~~Hp~~~~~--------~~~~~~-------------~~~~~~~~~~~-----~~~~~~~~~ 193 (471)
T 3t41_A 142 --LPKHANTKIAIIDTGVMKNHDDLKNN--------FSTDSK-------------NLVPLNGFRGT-----EPEETGDVH 193 (471)
T ss_dssp --CCSSCCCCEEEEESCCCTTCTTTTTT--------BCTTCE-------------ECCCTTCGGGC-----CTTCCCCTT
T ss_pred --cCCCCCcEEEEEeCCCCCCChhHhcC--------cccCCc-------------ccccCCCccCC-----CcccCCCCC
Confidence 68999999999999999999999986 111100 00000001100 011111224
Q ss_pred CCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 003446 229 SPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLSIGP 308 (819)
Q Consensus 229 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~ 308 (819)
.+.|.+||||||||||+|+. .+.||||+|+|+.+|++++.++..+++++||+||+++|++|||||||.
T Consensus 194 ~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 261 (471)
T 3t41_A 194 DVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGS 261 (471)
T ss_dssp CCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCE
T ss_pred CCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 56789999999999999873 257999999999999999866889999999999999999999999997
Q ss_pred CCCC----CC-----ccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC------------------cccCCcceEEEc
Q 003446 309 DEPP----RD-----TITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST------------------VVSYSPWAVAAA 361 (819)
Q Consensus 309 ~~~~----~~-----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~------------------~~~~~p~vitVg 361 (819)
.... .+ .....+.++.+++.+.++|++||+||||+|..... .|+.++++|+||
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVg 341 (471)
T 3t41_A 262 YIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVG 341 (471)
T ss_dssp EEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEE
T ss_pred CCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEE
Confidence 3210 00 01234678899999999999999999999986432 455566677776
Q ss_pred cccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEE
Q 003446 362 ACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVI 441 (819)
Q Consensus 362 As~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~ 441 (819)
|++.
T Consensus 342 A~~~---------------------------------------------------------------------------- 345 (471)
T 3t41_A 342 STDQ---------------------------------------------------------------------------- 345 (471)
T ss_dssp EECT----------------------------------------------------------------------------
T ss_pred eeCC----------------------------------------------------------------------------
Confidence 5321
Q ss_pred EEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCccee
Q 003446 442 CTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAI 521 (819)
Q Consensus 442 ~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 521 (819)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCe----------------------EEEe
Q 003446 522 KFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQ----------------------IWAA 579 (819)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~----------------------I~Sa 579 (819)
.+.++.||||||+. |||+|||++ |+++
T Consensus 346 -------------------~~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~ 394 (471)
T 3t41_A 346 -------------------KSNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTT 394 (471)
T ss_dssp -------------------TSSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEE
T ss_pred -------------------CCCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEec
Confidence 13578999999963 399999987 8998
Q ss_pred ecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccccccCCCccccccccccccCCC
Q 003446 580 WSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNP-SWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNS 658 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P-~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 658 (819)
++ ++.|..++|||||||||||++|||+|++| .|+|++||++|++||.+... .
T Consensus 395 ~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~-----------------~ 447 (471)
T 3t41_A 395 AN----------NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN-----------------K 447 (471)
T ss_dssp CT----------TSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC-----------------C
T ss_pred CC----------CCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC-----------------C
Confidence 84 45899999999999999999999999999 89999999999999987532 2
Q ss_pred CCcccccccccccccCCC
Q 003446 659 THFDFGSGLVSATRALDP 676 (819)
Q Consensus 659 ~~~~~GaG~vn~~~Al~~ 676 (819)
++..||+|+||+.+|++.
T Consensus 448 ~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 448 PFSRYGHGELDVYKALNV 465 (471)
T ss_dssp CHHHHTTCBBCHHHHTTT
T ss_pred CcCccccChhCHHHHHHH
Confidence 346799999999999985
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=517.98 Aligned_cols=335 Identities=19% Similarity=0.196 Sum_probs=40.0
Q ss_pred ccEEEEeeeeeeEEEEEcCHHHHHHHhcCCCceEEEeCccccccccCCCCccCCCc--------ccccccCCCCCCCCCe
Q 003446 86 YNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTPQFLGLPQ--------GVWTQRGGDKNAGEGI 157 (819)
Q Consensus 86 ~~~~~~~~~~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~g~~~--------~~w~~~~~~~~~G~gv 157 (819)
.++.+.|++.|+||+++++++++++|+++|+|++||++..+.... ..|++.. ..|.. +.+|+||
T Consensus 109 ~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~----~pWgL~~i~~~~~~~~~w~~----~~~G~GV 180 (692)
T 2p4e_P 109 TKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS----IPWNLERITPPRYRADEYQP----PDGGSLV 180 (692)
T ss_dssp CEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC------------------------------------
T ss_pred cceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC----CCcchhhccccccccccccc----CCCCCCc
Confidence 467889999999999999999999999999999999999876421 1244322 13443 6899999
Q ss_pred EEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCCCCCCCc
Q 003446 158 VIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHG 237 (819)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 237 (819)
+|||||||||++||+|.++.. |. .+++..+ .+.......+.|.+|||
T Consensus 181 ~VaVIDTGId~~HpdL~gr~~-------~~--------------------~~~~~~d------~dg~~~~~~~~D~~GHG 227 (692)
T 2p4e_P 181 EVYLLDTSIQSDHREIEGRVM-------VT--------------------DFENVPE------EDGTRFHRQASKCDSHG 227 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCCCChhhcCceE-------ec--------------------ccccccC------CCCCcccCCCCCCCCcH
Confidence 999999999999999998610 10 0000000 00000013456889999
Q ss_pred cccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC------CCcEEEeCCCCCC
Q 003446 238 SHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD------GVDILTLSIGPDE 310 (819)
Q Consensus 238 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~ 310 (819)
|||||||+|+. .||||+|+|+++||+++.| ++.+++++||+|++++ |++|||||||+..
T Consensus 228 THVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~ 293 (692)
T 2p4e_P 228 THLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY 293 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC
Confidence 99999999873 5999999999999999877 7888999999999986 8999999999642
Q ss_pred CCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC-cccCCcceEEEccccccceeeeeEEeCCCeEEeeecCCCC
Q 003446 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST-VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGP 389 (819)
Q Consensus 311 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~ 389 (819)
...++.+++++.++||+||+||||+|.+... .|+..|++|+|||++.+...
T Consensus 294 --------s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~-------------------- 345 (692)
T 2p4e_P 294 --------SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc--------------------
Confidence 3567888889999999999999999986543 47778999999986422100
Q ss_pred CCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceE
Q 003446 390 TCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMG 469 (819)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 469 (819)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccc
Q 003446 470 FILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSS 549 (819)
Q Consensus 470 ~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS 549 (819)
...-+.||+
T Consensus 346 -----------------------------------------------------------------------a~~ss~fSn 354 (692)
T 2p4e_P 346 -----------------------------------------------------------------------VTLGTLGTN 354 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------------------------cccccccCC
Confidence 000123889
Q ss_pred cCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHH
Q 003446 550 RGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIAS 629 (819)
Q Consensus 550 ~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~ 629 (819)
|||. |||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+|+|||+
T Consensus 355 ~G~~-------------vDI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~ 413 (692)
T 2p4e_P 355 FGRC-------------VDLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQ 413 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCc-------------eeEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 9974 49999999999998642 24799999999999999999999999999999999999
Q ss_pred HHHhcccccccCCCcccccccc-cccc---CCCCCccccccc--ccccccCC
Q 003446 630 AISSTATKYDNYGQLIMAEGFE-ITST---YNSTHFDFGSGL--VSATRALD 675 (819)
Q Consensus 630 ~L~~TA~~~~~~g~~~~~~~~~-~~~~---~~~~~~~~GaG~--vn~~~Al~ 675 (819)
+|++||.+....+.++...... ..+. .......+|+|+ .++..+..
T Consensus 414 ~L~~tA~~~~~~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~~~s 465 (692)
T 2p4e_P 414 RLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 465 (692)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHhccccccCCCCCccccCCCCcceeecCCCccccCCCCccccccccccC
Confidence 9999997653222111100000 0000 011345678888 77777764
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-54 Score=501.40 Aligned_cols=337 Identities=24% Similarity=0.302 Sum_probs=252.7
Q ss_pred cEEEEeeeeeeEEEEEcCH---H-HHHHHh--cCCCceEEEeCccccccccC----C-----------------------
Q 003446 87 NKLYSFKYTVNGFAVHLTP---T-QAKKLE--NAPQVKLVERDRRAKLMTSY----T----------------------- 133 (819)
Q Consensus 87 ~~~~~~~~~~ng~~~~~~~---~-~~~~L~--~~p~V~~v~~~~~~~~~~~~----~----------------------- 133 (819)
++.+++. .+++++++++. + .+++|+ ++|+|++|||+..+++.... .
T Consensus 54 ~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (671)
T 1r6v_A 54 KVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELS 132 (671)
T ss_dssp EEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTG
T ss_pred eEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccccc
Confidence 4566653 68899999865 3 346676 48999999999876543100 0
Q ss_pred CCc-----cCCCccc-ccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEE
Q 003446 134 PQF-----LGLPQGV-WTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVS 207 (819)
Q Consensus 134 ~~~-----~g~~~~~-w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g 207 (819)
... ++++. + |+. ++|+||+|||||||||++||+|.++ ++.
T Consensus 133 ~~~W~l~~I~~~~-a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~----------------------------~~~ 178 (671)
T 1r6v_A 133 NELWGLEAIGVTQ-QLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQ----------------------------VIA 178 (671)
T ss_dssp GGCHHHHHTTCCH-HHHHH-----CSCTTCEEEEEESCCBTTSGGGTTT----------------------------BCC
T ss_pred ccCCchhccCCch-hhhhc-----cCCCCCEEEEEeCCCCCCCcccccc----------------------------EEe
Confidence 011 22333 4 665 6899999999999999999999976 111
Q ss_pred EEEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecC------CC
Q 003446 208 ARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYP------TV 281 (819)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~------~g 281 (819)
++++..+. ..+ ...+..|.+||||||||||||..+ + ..+.||||+|+|+++|+++. .+
T Consensus 179 g~~~~~~~-----~~p--~~~d~~d~~gHGThVAGiIAa~~n------g---~gv~GVAP~A~I~~vkv~~~~~~~~g~g 242 (671)
T 1r6v_A 179 GYRPAFDE-----ELP--AGTDSSYGGSAGTHVAGTIAAKKD------G---KGIVGVAPGAKIMPIVIFDDPALVGGNG 242 (671)
T ss_dssp EEEGGGTE-----EEC--TTCBCCTTCSHHHHHHHHHHCCCS------S---SSCCCSCTTSEEEEEESBCCHHHHCTTS
T ss_pred cccccCCC-----cCC--CCCCCccCCCcchhhhhhhhccCC------C---CceEEECCCCEEEEEEeccCccccCCCC
Confidence 22221110 000 112345678999999999999742 1 23589999999999999987 22
Q ss_pred -CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEE
Q 003446 282 -GTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVA 359 (819)
Q Consensus 282 -~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vit 359 (819)
...+.+++||+||+++|++|||||||+.. +...+..|+++|.++|++||+||||+|.+. ...|+..|++|+
T Consensus 243 ~~s~~~i~~ai~~A~~~gadVIN~SlG~~~-------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VIt 315 (671)
T 1r6v_A 243 YVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQ 315 (671)
T ss_dssp BCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEE
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEeCCCCCC-------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEE
Confidence 34567899999999999999999999743 235788999999999999999999999865 566778899999
Q ss_pred EccccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceE
Q 003446 360 AAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSV 439 (819)
Q Consensus 360 VgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gki 439 (819)
|||++.+..
T Consensus 316 VgA~d~~g~----------------------------------------------------------------------- 324 (671)
T 1r6v_A 316 VAALDYYGG----------------------------------------------------------------------- 324 (671)
T ss_dssp EEEEEEETT-----------------------------------------------------------------------
T ss_pred EEEEcCCCC-----------------------------------------------------------------------
Confidence 998532100
Q ss_pred EEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcc
Q 003446 440 VICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGV 519 (819)
Q Consensus 440 v~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~ 519 (819)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCC--------CCcC
Q 003446 520 AIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALD--------PMLT 591 (819)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~ 591 (819)
...++.|||+||.. ||+|||++|+|+++...... ....
T Consensus 325 ---------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~ 370 (671)
T 1r6v_A 325 ---------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATN 370 (671)
T ss_dssp ---------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSS
T ss_pred ---------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccC
Confidence 01378899999976 99999999999987542110 0112
Q ss_pred CCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCccccccccccc
Q 003446 592 GCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSAT 671 (819)
Q Consensus 592 ~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~ 671 (819)
++.|..++|||||||||||++|||+|++|+|+|.+||++|++||+++...|. +..||+|+||+.
T Consensus 371 ~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~----------------d~~~G~G~vna~ 434 (671)
T 1r6v_A 371 GGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW----------------DHDTGYGLVKLD 434 (671)
T ss_dssp SCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC----------------BTTTBTCBCCHH
T ss_pred CCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC----------------CCCcccceeCHH
Confidence 4579999999999999999999999999999999999999999998754432 357999999999
Q ss_pred ccCCCCeEEec
Q 003446 672 RALDPGLVLSV 682 (819)
Q Consensus 672 ~Al~~~lv~d~ 682 (819)
+|++..+..+.
T Consensus 435 ~Al~~~l~~~~ 445 (671)
T 1r6v_A 435 AALQGPLPTQG 445 (671)
T ss_dssp HHHHCCCCSSS
T ss_pred HHhhhhcCCCC
Confidence 99987665543
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=482.76 Aligned_cols=391 Identities=21% Similarity=0.265 Sum_probs=272.1
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++.++ +|+. +|+||+|||||||||++||+|.++ ++.++++...
T Consensus 11 i~~~~-~w~~------~g~gv~VaViDtGvd~~Hp~l~~~----------------------------~~~~~~~~~~-- 53 (441)
T 1y9z_A 11 VGATV-LSDS------QAGNRTICIIDSGYDRSHNDLNAN----------------------------NVTGTNNSGT-- 53 (441)
T ss_dssp TTCSS-SCCT------TGGGCEEEEEESCCCTTSTTTTTS----------------------------EEEECCCTTS--
T ss_pred cChhh-hhhc------CCCCcEEEEEcCCCCCCChhHhcC----------------------------cccCcccCCC--
Confidence 45554 7765 477999999999999999999975 2222222110
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCC--eEEEEEeecCCC-CCHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCA--RIAVYKAMYPTV-GTLADVIAAIDQ 293 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A--~l~~~kv~~~~g-~~~~~i~~ai~~ 293 (819)
.+...+.|.+||||||||||+|..+. ..+.||||+| +|+.+|+++..| +..+++++||+|
T Consensus 54 --------~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~ 116 (441)
T 1y9z_A 54 --------GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDT 116 (441)
T ss_dssp --------CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHH
T ss_pred --------CCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHH
Confidence 11235678899999999999997521 2368999995 999999999877 788899999999
Q ss_pred HHhC-CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeee
Q 003446 294 ATMD-GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGS 372 (819)
Q Consensus 294 a~~~-g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~ 372 (819)
|+++ |+||||||||.... ...+..++++|.++|++||+||||+|.....+|+..+++|+|||++.+.....+
T Consensus 117 a~~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~ 189 (441)
T 1y9z_A 117 CVNSGGANVVTMSLGGSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAF 189 (441)
T ss_dssp HHHTTCCSEEEECCCBSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTT
T ss_pred HHHhcCCcEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCcc
Confidence 9999 99999999997532 246788899999999999999999998877888889999999999876543222
Q ss_pred EEeCC-------------------Ce----EEeeecCCCCCCCCCCceee--EEEecccccccCCCCCCCcccccccCCC
Q 003446 373 LLLGN-------------------GL----KLGGVGLSGPTCGRPLFLSK--LVLARDVILRVNGTFPRTPQYIEECQYP 427 (819)
Q Consensus 373 ~~~~~-------------------g~----~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~C~~~ 427 (819)
...+. +. ++.+.+++..........++ +.+..+... .. .......|...
T Consensus 190 S~~g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~-g~-----~~~~~~~C~~~ 263 (441)
T 1y9z_A 190 SQYTDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN-AS-----ATGALAECTVN 263 (441)
T ss_dssp SCCCTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCC-CE-----EEEEEEEEEEE
T ss_pred ccCCCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccc-cc-----cccchhccccc
Confidence 11111 11 11111111000000000000 011110000 00 00123457532
Q ss_pred -CCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCcc-----ccccCCCCCeEEecCcchH
Q 003446 428 -EAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFV-----AEPIPFAVPGILIPKVSTS 501 (819)
Q Consensus 428 -~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~~~~~~~~p~~~i~~~~~~ 501 (819)
..+...+++|||++|+|+... .....+.+|..+++++||.|+|++|+....+.. .......+|.+.+ +.+++
T Consensus 264 ~~~~~~~~~~gkivl~~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v-~~~~g 341 (441)
T 1y9z_A 264 GTSFSCGNMANKICLVERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSV-DRATG 341 (441)
T ss_dssp TTEEECCCCTTEEEEEECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEE-CHHHH
T ss_pred cccccCCCccccEEEEeccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEE-eHHHH
Confidence 245677899999999995221 112456788999999999999999987543321 1223457888776 66777
Q ss_pred HHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeec
Q 003446 502 EIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWS 581 (819)
Q Consensus 502 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~ 581 (819)
+.|++|+.+. . .+ ++.
T Consensus 342 ~~l~~~~~~~------------------------------------------~-------------t~--------~~~- 357 (441)
T 1y9z_A 342 LALKAKLGQS------------------------------------------T-------------TV--------SNQ- 357 (441)
T ss_dssp HHHHTTTTSE------------------------------------------E-------------EE--------EEE-
T ss_pred HHHHHHhcCC------------------------------------------c-------------cc--------ccc-
Confidence 7777654210 0 00 111
Q ss_pred CCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCc
Q 003446 582 PVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHF 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~ 661 (819)
.++.|..+||||||||||||++|||+|+||+|+|++||++||+||++++..+. +.
T Consensus 358 ---------~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~----------------~~ 412 (441)
T 1y9z_A 358 ---------GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR----------------DN 412 (441)
T ss_dssp ---------EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC----------------BT
T ss_pred ---------cCCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC----------------cc
Confidence 23489999999999999999999999999999999999999999998865443 35
Q ss_pred ccccccccccccCCCCeEEeccchhhHHhhhccCC
Q 003446 662 DFGSGLVSATRALDPGLVLSVEFEDYISFLCSLAD 696 (819)
Q Consensus 662 ~~GaG~vn~~~Al~~~lv~d~~~~~~~~~~~~~~~ 696 (819)
+||+|+||+.+|+ ||+.|||+++.
T Consensus 413 ~~G~G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 413 QTGYGMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp TTBTCBCCHHHHH-----------HHHHHCTTCC-
T ss_pred cccccccCHHHHH-----------HHHHhhhcCCC
Confidence 7999999999996 68999998765
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=437.77 Aligned_cols=261 Identities=31% Similarity=0.433 Sum_probs=212.3
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|+. +..|+||+|||||||||++||+|.++ ++.+++|.+.
T Consensus 18 i~~~~-aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~----------------------------~~~~~~~~~~-- 62 (280)
T 1dbi_A 18 TYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK----------------------------VIKGYDFVDN-- 62 (280)
T ss_dssp GTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT----------------------------EEEEEETTTT--
T ss_pred cCcHH-HHhh----cCCCCCCEEEEEeCCcCCCChhhccC----------------------------cccceeccCC--
Confidence 34433 7877 56677999999999999999999864 6667777643
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
..++.|..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 63 ----------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~ 124 (280)
T 1dbi_A 63 ----------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAA 124 (280)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHH
Confidence 1346788999999999999975322 2357999999999999998877 78899999999999
Q ss_pred hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEe
Q 003446 296 MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLL 375 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 375 (819)
++|++|||||||.... ...++.+++++.++|++||+||||+|......|+..+++|+|||++.+
T Consensus 125 ~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 188 (280)
T 1dbi_A 125 DSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY--------- 188 (280)
T ss_dssp HTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT---------
T ss_pred HCCCCEEEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC---------
Confidence 9999999999997532 357888999999999999999999998777778888999999874211
Q ss_pred CCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccch
Q 003446 376 GNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTL 455 (819)
Q Consensus 376 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~ 455 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceee
Q 003446 456 TAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVA 535 (819)
Q Consensus 456 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (819)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHH
Q 003446 536 SFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALI 615 (819)
Q Consensus 536 ~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 615 (819)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||
T Consensus 189 ------~~~~~~S~~G~~~-------------dv~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll 239 (280)
T 1dbi_A 189 ------DRLASFSNYGTWV-------------DVVAPGVDIVSTIT----------GNRYAYMSGTSMASPHVAGLAALL 239 (280)
T ss_dssp ------SCBCTTBCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHH
T ss_pred ------CCcCCCCCCCCCc-------------eEEEecCCeEeecC----------CCCEEEccCHHHHHHHHHHHHHHH
Confidence 2468899999765 99999999999984 458999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 616 KQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 616 ~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++ |.+++.|||++|++||+++... ...||+|+||+.+|++
T Consensus 240 ~~--p~~t~~~v~~~L~~ta~~~~~~------------------~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 240 AS--QGRNNIEIRQAIEQTADKISGT------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HH--TTCCHHHHHHHHHHTSBCCTTB------------------TTTBSSEECCHHHHHT
T ss_pred HC--CCCCHHHHHHHHHHhCccCCCC------------------CCcccCCEECHHHHhc
Confidence 87 8999999999999999987532 1369999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-51 Score=435.18 Aligned_cols=260 Identities=33% Similarity=0.479 Sum_probs=219.8
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|+. .+|+||+|||||||||++||+|.++ ++.+++|.+.
T Consensus 18 i~~~~-aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~----------------------------~~~~~~~~~~-- 61 (279)
T 1thm_A 18 IQAPQ-AWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK----------------------------VVGGWDFVDN-- 61 (279)
T ss_dssp TTHHH-HHTT-----CCCTTCEEEEEESCCCTTCTTTTTT----------------------------EEEEEETTTT--
T ss_pred CChHH-HHhc-----CCCCCCEEEEEccCCCCCCcchhcC----------------------------ccccccccCC--
Confidence 44444 8886 4799999999999999999999964 6667777643
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
...+.|.++|||||||||+|...++ ..+.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 62 ----------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~ 123 (279)
T 1thm_A 62 ----------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAA 123 (279)
T ss_dssp ----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHH
Confidence 1346788999999999999975422 2357999999999999998876 78889999999999
Q ss_pred hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEe
Q 003446 296 MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLL 375 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 375 (819)
++|++|||||||.... .+.++.+++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 124 ~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------- 187 (279)
T 1thm_A 124 DQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------- 187 (279)
T ss_dssp HTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------
T ss_pred HCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC---------
Confidence 9999999999997532 257888999999999999999999998777788888999999874211
Q ss_pred CCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccch
Q 003446 376 GNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTL 455 (819)
Q Consensus 376 ~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~ 455 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceee
Q 003446 456 TAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVA 535 (819)
Q Consensus 456 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHH
Q 003446 536 SFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALI 615 (819)
Q Consensus 536 ~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 615 (819)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||
T Consensus 188 ------~~~~~fS~~G~~~-------------dv~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll 238 (279)
T 1thm_A 188 ------DNKSSFSTYGSWV-------------DVAAPGSSIYSTYP----------TSTYASLSGTSMATPHVAGVAGLL 238 (279)
T ss_dssp ------SCBCTTCCCCTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHH
T ss_pred ------CCcCCcCCCCCce-------------EEEEcCCCeEEEeC----------CCCEEEcccHHHHHHHHHHHHHHH
Confidence 2467899999765 99999999999984 458999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 616 KQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 616 ~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++|.+++.+||++|++||+++...+ ..||+|+||+.+|++
T Consensus 239 --~~p~~t~~~v~~~L~~ta~~~~~~~------------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 239 --ASQGRSASNIRAAIENTADKISGTG------------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp --HTTTCCHHHHHHHHHHTCBCCTTBT------------------TTBSSEECCHHHHHH
T ss_pred --HCCCcCHHHHHHHHHHhCccCCCCC------------------ccccCCeeCHHHHhc
Confidence 5799999999999999999875432 368999999999974
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=430.83 Aligned_cols=253 Identities=34% Similarity=0.517 Sum_probs=215.2
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|+|||||| .+||+|+ +..+++|..+
T Consensus 16 a~~~----g~~G~gv~VaViDtGi-~~h~~l~------------------------------~~~~~~~~~~-------- 52 (269)
T 1gci_A 16 AHNR----GLTGSGVKVAVLDTGI-STHPDLN------------------------------IRGGASFVPG-------- 52 (269)
T ss_dssp HHHT----TCSCTTCEEEEEESCC-CCCTTCC------------------------------EEEEEECSTT--------
T ss_pred HHhc----CCCCCCCEEEEECCCC-CCCHhhc------------------------------ccCCcccCCC--------
Confidence 7876 7899999999999999 8999994 2344555432
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 301 (819)
...+.|.+||||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..+++++||+||++++++|
T Consensus 53 ----~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~V 119 (269)
T 1gci_A 53 ----EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHV 119 (269)
T ss_dssp ----CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSE
T ss_pred ----CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeE
Confidence 123568899999999999997321 2357999999999999998876 78889999999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEE
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKL 381 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~ 381 (819)
||||||.... ...++.+++++.++|++||+||||+|......|+..+++|+|||++.+
T Consensus 120 in~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------- 177 (269)
T 1gci_A 120 ANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------- 177 (269)
T ss_dssp EEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------
T ss_pred EEeCCCCCCC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC---------------
Confidence 9999997532 257888999999999999999999998877788888999999974210
Q ss_pred eeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHH
Q 003446 382 GGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINT 461 (819)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~ 461 (819)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCC
Q 003446 462 AITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRA 541 (819)
Q Consensus 462 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (819)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCC
Q 003446 542 PIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPS 621 (819)
Q Consensus 542 ~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 621 (819)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|+
T Consensus 178 ~~~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 234 (269)
T 1gci_A 178 NNRASFSQYGAGL-------------DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGAAALVKQKNPS 234 (269)
T ss_dssp SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCCCCCc-------------ceEecCCCeEeecC----------CCCEEEcCcHHHHHHHHHHHHHHHHHhCCC
Confidence 2467899999865 99999999999984 458999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 622 WTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 622 ~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|++.|||++|++||+++. .++.||+|+||+.+|++
T Consensus 235 ~t~~~v~~~L~~tA~~~g-------------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 235 WSNVQIRNHLKNTATSLG-------------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp CCHHHHHHHHHHTSBCCS-------------------CHHHHTTCBCCHHHHTC
T ss_pred CCHHHHHHHHHHhCccCC-------------------CCCCcccCccCHHHHcC
Confidence 999999999999998763 13469999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=432.61 Aligned_cols=259 Identities=31% Similarity=0.481 Sum_probs=214.7
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|.. +++|+||+|+|||||||++||+|+ +..+++|..+
T Consensus 11 i~~~~-~~~~----g~~G~gv~VaViDtGid~~h~~l~------------------------------~~~g~~~~~~-- 53 (274)
T 1r0r_E 11 IKADK-VQAQ----GFKGANVKVAVLDTGIQASHPDLN------------------------------VVGGASFVAG-- 53 (274)
T ss_dssp TTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCC------------------------------EEEEEECSTT--
T ss_pred cCCHH-HHhc----CCCCCCCEEEEEcCCCCCCCHhHc------------------------------CCCCccccCC--
Confidence 33333 7877 789999999999999999999994 2344455432
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
...+.|.++|||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..++++++|+||+
T Consensus 54 ----------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~ 114 (274)
T 1r0r_E 54 ----------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT 114 (274)
T ss_dssp ----------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred ----------CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHH
Confidence 123567899999999999997421 2358999999999999998877 78889999999999
Q ss_pred hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC----CCcccCCcceEEEccccccceeee
Q 003446 296 MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP----STVVSYSPWAVAAAACTTDRIYPG 371 (819)
Q Consensus 296 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgAs~~~~~~~~ 371 (819)
+++++|||||||.... ...++.+++++.++|++||+||||+|... ...|+..+++|+|||++.
T Consensus 115 ~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------ 181 (274)
T 1r0r_E 115 TNGMDVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS------ 181 (274)
T ss_dssp HTTCSEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT------
T ss_pred HcCCCEEEeCCCCCCC-------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC------
Confidence 9999999999997542 25788899999999999999999999763 345666788888886421
Q ss_pred eEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCC
Q 003446 372 SLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQ 451 (819)
Q Consensus 372 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g 451 (819)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeecc
Q 003446 452 TSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGE 531 (819)
Q Consensus 452 ~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (819)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHH
Q 003446 532 GRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611 (819)
Q Consensus 532 ~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~ 611 (819)
.+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||+
T Consensus 182 ---------~~~~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~ 229 (274)
T 1r0r_E 182 ---------NSNRASFSSVGAEL-------------EVMAPGAGVYSTYP----------TNTYATLNGTSMASPHVAGA 229 (274)
T ss_dssp ---------TSCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHH
T ss_pred ---------CCCcCccCCCCCCc-------------eEEeCCCCeEeecC----------CCCEEEeccHHHHHHHHHHH
Confidence 12468899999865 99999999999984 45899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 612 AALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 612 aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
+|||+|++|+|++.|||++|++||+++. +++.||+|+||+.+|++
T Consensus 230 aAll~~~~p~lt~~~v~~~L~~tA~~~g-------------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 230 AALILSKHPNLSASQVRNRLSSTATYLG-------------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTCBCCS-------------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCcccC-------------------CCCCcccCccCHHHHhC
Confidence 9999999999999999999999998763 13579999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=430.31 Aligned_cols=256 Identities=31% Similarity=0.471 Sum_probs=213.1
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||||||++||+|+. ..+++|...
T Consensus 16 ~~~~----g~~G~gv~VaViDtGid~~h~~l~~------------------------------~~g~~~~~~-------- 53 (281)
T 1to2_E 16 LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKV------------------------------AGGASMVPS-------- 53 (281)
T ss_dssp HHHH----TCSCTTCEEEEEESCCCTTCTTCCE------------------------------EEEEECCTT--------
T ss_pred HHhc----CCCCCCCEEEEEcCCCCCCCHHHcC------------------------------cCCccccCC--------
Confidence 7877 7899999999999999999999952 233444322
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCCcE
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGVDI 301 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dV 301 (819)
+.....|..+|||||||||+|..+. ..+.||||+|+|+.+|+++..+ +..++++++|+|+++++++|
T Consensus 54 ---~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~V 121 (281)
T 1to2_E 54 ---ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDV 121 (281)
T ss_dssp ---CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSE
T ss_pred ---CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcE
Confidence 1112357899999999999997421 2357999999999999998877 77889999999999999999
Q ss_pred EEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC----CCcccCCcceEEEccccccceeeeeEEeCC
Q 003446 302 LTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP----STVVSYSPWAVAAAACTTDRIYPGSLLLGN 377 (819)
Q Consensus 302 In~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~----~~~~~~~p~vitVgAs~~~~~~~~~~~~~~ 377 (819)
||||||.... ...+..+++++.++|++||+||||+|... ...|+..|++|+|||++.
T Consensus 122 in~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~------------ 182 (281)
T 1to2_E 122 INMSLGGPSG-------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS------------ 182 (281)
T ss_dssp EEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT------------
T ss_pred EEECCcCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC------------
Confidence 9999997542 35788899999999999999999999763 345666788888886421
Q ss_pred CeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHH
Q 003446 378 GLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTA 457 (819)
Q Consensus 378 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~ 457 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeec
Q 003446 458 VINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASF 537 (819)
Q Consensus 458 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH
Q 003446 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ 617 (819)
Q Consensus 538 ~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q 617 (819)
.+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|
T Consensus 183 ---~~~~~~fS~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~ 236 (281)
T 1to2_E 183 ---SNQRASFSSVGPEL-------------DVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILS 236 (281)
T ss_dssp ---TSCBCTTCCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECBHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcCCcCCCCCCc-------------eEEecCCCeEeecC----------CCCEEecCcHHHHHHHHHHHHHHHHH
Confidence 13468899999865 99999999999984 45899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 618 HNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 618 ~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
++|+|++.|||++|++||+++. +++.||+|+||+.+|++.
T Consensus 237 ~~p~lt~~~v~~~L~~tA~~~g-------------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 237 KHPNWTNTQVRSSLENTTTKLG-------------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HSTTCCHHHHHHHHHTTCBCCS-------------------CHHHHTTCBCCHHHHTSS
T ss_pred hCCCCCHHHHHHHHHhhCcccC-------------------CCCCcccceecHHHHhhh
Confidence 9999999999999999998763 135799999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=435.21 Aligned_cols=265 Identities=25% Similarity=0.269 Sum_probs=210.1
Q ss_pred CCCC-CCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCC
Q 003446 151 KNAG-EGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLS 229 (819)
Q Consensus 151 ~~~G-~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~ 229 (819)
.++| +||+|||||||||++||+|.++ ++..+++... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~----------------------------~~~~~~~~~~----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA----------------------------DLTVLPTLAP----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC----------------------------EEEECCCSSC----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC----------------------------eeecCcCCCC----------CCCCC
Confidence 3678 7999999999999999999976 1111111111 01122
Q ss_pred CCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 003446 230 PFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQATMDGVDILTLSIG 307 (819)
Q Consensus 230 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIn~SlG 307 (819)
..|.+||||||||||+|+.+. .+.||||+|+|+.+|++.+.+ ....+++++|+||++++++|||||||
T Consensus 45 d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G 114 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGG 114 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCc
Confidence 234579999999999997532 357999999999999987643 67788999999999999999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEeeecCC
Q 003446 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLS 387 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~ 387 (819)
..... ......++.+++.+.++|+++|+||||+|......|+..+++|+|||++.+
T Consensus 115 ~~~~~---~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------- 170 (282)
T 3zxy_A 115 ELTDF---GEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH--------------------- 170 (282)
T ss_dssp EEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT---------------------
T ss_pred ccccc---ccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC---------------------
Confidence 65332 123467888999999999999999999998877788888999999974211
Q ss_pred CCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCc
Q 003446 388 GPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGF 467 (819)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga 467 (819)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCCeeecc
Q 003446 468 MGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRF 547 (819)
Q Consensus 468 ~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~F 547 (819)
+.++.|
T Consensus 171 --------------------------------------------------------------------------~~~~~~ 176 (282)
T 3zxy_A 171 --------------------------------------------------------------------------GHPLDF 176 (282)
T ss_dssp --------------------------------------------------------------------------SCBCSS
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 246778
Q ss_pred cccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhC----CCCC
Q 003446 548 SSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHN----PSWT 623 (819)
Q Consensus 548 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~----P~~s 623 (819)
|+||+. ..||||+|||++|+++++ ++.|..++|||||||||||++|||+|++ |.++
T Consensus 177 S~~~~~----------~~~~di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~ 236 (282)
T 3zxy_A 177 SNWGST----------YEQQGILAPGEDILGAKP----------GGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPD 236 (282)
T ss_dssp SCCCHH----------HHHHEEEEECSSEEEECT----------TSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCCC----------ccccceeccCcceeeecC----------CCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCC
Confidence 998875 368899999999999984 4589999999999999999999999974 7899
Q ss_pred HHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 624 PTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 624 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|+|||++|++||++++.. .+.....+|+|+||+.+|++
T Consensus 237 ~~~vk~~L~~tA~~~~~~--------------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 237 PQKVRQLLLQSALPCDDD--------------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHCBCC---------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHHHHHhhCeeCCCC--------------CCCccCceeeeEeCHHHHHH
Confidence 999999999999876432 12335679999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-52 Score=459.68 Aligned_cols=311 Identities=20% Similarity=0.178 Sum_probs=193.6
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
..|+++ +|.+ +..|+||+|||||||||++||+|++... ......|+..++....... ..+..+. ........
T Consensus 17 ipG~~~-~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 88 (357)
T 4h6x_A 17 IPGLAD-LHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEV-SKVFPYWHEPAEPITPEDY-AAFQSIR-DQGLKGKE 88 (357)
T ss_dssp STTHHH-HHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEE-EECCCTTSCCCCCCCHHHH-HHHHHHH-HHTCCSHH
T ss_pred ccCHHH-HHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCc-ccccccccccccccCcccc-ccccccc-Cccccccc
Confidence 345555 8988 5778999999999999999999998610 1111245544332110000 0000000 00000000
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC------CCHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV------GTLADVIA 289 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g------~~~~~i~~ 289 (819)
..........+..++.|.+||||||||||+|+.+ +.+.||||+|+|+.+|++.... ....++++
T Consensus 89 ~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ 158 (357)
T 4h6x_A 89 KEEALEAVIPDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLAR 158 (357)
T ss_dssp HHHHHHHHCTTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHH
T ss_pred cccccccccCCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHH
Confidence 0000000011123345778999999999999753 2358999999999999976422 33456889
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEcccccccee
Q 003446 290 AIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIY 369 (819)
Q Consensus 290 ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~ 369 (819)
+|+||+++|++|||||||..... ....+.+..+++++.++|++||+||||+|.....+|+..|++|+|||++.+
T Consensus 159 ai~~a~~~g~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--- 232 (357)
T 4h6x_A 159 AIDLALELGANIIHCAFCRPTQT---SEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD--- 232 (357)
T ss_dssp HHHHHHHTTCSEEEEC--------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT---
T ss_pred HHHHHHHcCCCEEeeccccCCcc---ccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC---
Confidence 99999999999999999975433 234568889999999999999999999998887888888999999974211
Q ss_pred eeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCcc
Q 003446 370 PGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFY 449 (819)
Q Consensus 370 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~ 449 (819)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeee
Q 003446 450 NQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGI 529 (819)
Q Consensus 450 ~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (819)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHH
Q 003446 530 GEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIA 609 (819)
Q Consensus 530 ~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VA 609 (819)
+.++.|||||+. ..||||+|||++|+|+++. ++.|..++||||||||||
T Consensus 233 ------------~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~~---------~~~~~~~sGTS~AaP~va 281 (357)
T 4h6x_A 233 ------------GTPCHFSNWGGN----------NTKEGILAPGEEILGAQPC---------TEEPVRLTGTSMAAPVMT 281 (357)
T ss_dssp ------------SSBCTTCC---C----------TTTTEEEEECSSEEECCTT---------CSCCEEECSHHHHHHHHH
T ss_pred ------------CcccccccCCCC----------CCccceeecCCCeEeccCC---------CCcccccCcHHHHHHHHH
Confidence 357889999975 3689999999999999853 346788999999999999
Q ss_pred HHHHHHHHh----CCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 610 GIAALIKQH----NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 610 G~aALl~q~----~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|++|||+++ +|.|+++|||++|++||++++..+ ...+.+||+|+||+.+|++
T Consensus 282 G~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~--------------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 282 GISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV--------------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------------------CTTCBCCHHHHHH
T ss_pred HHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCC--------------CCCcccceeEEecHHHHHH
Confidence 999999964 668999999999999999875322 2335679999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=437.31 Aligned_cols=266 Identities=30% Similarity=0.392 Sum_probs=215.2
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|.. +++|+||+|||||||||++||+|.++ ++.+++|..+..
T Consensus 28 i~~~~-aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~----------------------------~~~~~~~~~~~~ 74 (327)
T 2x8j_A 28 VEAPA-VWRA----SAKGAGQIIGVIDTGCQVDHPDLAER----------------------------IIGGVNLTTDYG 74 (327)
T ss_dssp TTHHH-HHHH----HGGGTTCEEEEEESCCCTTCTTTGGG----------------------------EEEEEECSSGGG
T ss_pred cChHH-HHhc----CCCCCCCEEEEEcCCCCCCChhHhhc----------------------------ccCCccccCCCC
Confidence 44444 7887 68999999999999999999999864 666777765411
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
.+...+.|..||||||||||+|..+ + ..+.||||+|+|+.+|+++..+ +..+++++||+||+
T Consensus 75 --------~~~~~~~d~~gHGT~VAgiia~~~~------~---~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~ 137 (327)
T 2x8j_A 75 --------GDETNFSDNNGHGTHVAGTVAAAET------G---SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAV 137 (327)
T ss_dssp --------GCTTCCCCSSSHHHHHHHHHHCCCC------S---SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHH
T ss_pred --------CCCCCCCCCCCchHHHHHHHhccCC------C---CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHH
Confidence 0112356889999999999999742 1 2358999999999999999877 78889999999999
Q ss_pred h------CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-----CCcccCCcceEEEcccc
Q 003446 296 M------DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-----STVVSYSPWAVAAAACT 364 (819)
Q Consensus 296 ~------~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgAs~ 364 (819)
+ .+++|||||||.... ...+..+++++.++|++||+||||+|... ...|+..+++|+|||++
T Consensus 138 ~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~ 210 (327)
T 2x8j_A 138 DWRGPKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVD 210 (327)
T ss_dssp HCCCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEEC
T ss_pred hhcccccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEEC
Confidence 9 899999999997532 35788899999999999999999999752 34566778899888742
Q ss_pred ccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEe
Q 003446 365 TDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTF 444 (819)
Q Consensus 365 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~ 444 (819)
.+
T Consensus 211 ~~------------------------------------------------------------------------------ 212 (327)
T 2x8j_A 211 FD------------------------------------------------------------------------------ 212 (327)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred cCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeec
Q 003446 445 SDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFN 524 (819)
Q Consensus 445 ~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 524 (819)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccch
Q 003446 525 AQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMA 604 (819)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMA 604 (819)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||
T Consensus 213 -----------------~~~~~fS~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~A 252 (327)
T 2x8j_A 213 -----------------LRLSDFTNTNEEI-------------DIVAPGVGIKSTYL----------DSGYAELSGTAMA 252 (327)
T ss_dssp -----------------CCBSCC---CCCC-------------SEEEECSSEEEECS----------TTCEEEEESGGGT
T ss_pred -----------------CCCCCccCCCCCc-------------eEecCcCceEeecC----------CCCEEeecCHHHH
Confidence 3468899999854 99999999999984 4589999999999
Q ss_pred hhHHHHHHHHHHHh-----CCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 605 TPHIAGIAALIKQH-----NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 605 aP~VAG~aALl~q~-----~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
||||||++|||+|+ +|.|++.+||++|++||+++.. +++.+|+|+||+.+|++
T Consensus 253 aP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~------------------~~~~~G~G~vd~~~A~~ 310 (327)
T 2x8j_A 253 APHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF------------------TAQAEGNGFLTLDLVER 310 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS------------------CHHHHTTCEECTTHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC------------------CCCceeeeEECHHHHHH
Confidence 99999999999999 9999999999999999987631 24579999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-49 Score=427.98 Aligned_cols=289 Identities=30% Similarity=0.400 Sum_probs=224.5
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
+++++ +|.. +++|+||+|||||||||++||+|.++ +...++|....
T Consensus 13 i~~~~-~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~----------------------------~~~~~~~~~~~- 58 (310)
T 2ixt_A 13 IYNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNN----------------------------VEQCKDFTGAT- 58 (310)
T ss_dssp HHTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTT----------------------------EEEEEESSSSS-
T ss_pred cCchh-hhhc----cCCCCCcEEEEEecCCCCCCHHHhhc----------------------------ccccccccCCC-
Confidence 34444 7776 78999999999999999999999975 55566665431
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
........|..||||||||||+|.... +...+.||||+|+|+.+|++++.+ +..++++++|+||+
T Consensus 59 -------~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~ 124 (310)
T 2ixt_A 59 -------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAA 124 (310)
T ss_dssp -------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred -------CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 011133567899999999999987421 112368999999999999998876 78889999999999
Q ss_pred hCCC-----cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC--CCcccCCcceEEEccccccce
Q 003446 296 MDGV-----DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP--STVVSYSPWAVAAAACTTDRI 368 (819)
Q Consensus 296 ~~g~-----dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgAs~~~~~ 368 (819)
++++ +|||||||.... ...++.+++++.++|++||+||||+|... ...|+..+++|+|||++....
T Consensus 125 ~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~ 197 (310)
T 2ixt_A 125 DQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ 197 (310)
T ss_dssp HHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE
T ss_pred HhhhccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc
Confidence 9988 999999997542 35788899999999999999999999763 456777899999997531100
Q ss_pred eeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCc
Q 003446 369 YPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGF 448 (819)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~ 448 (819)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeee
Q 003446 449 YNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAG 528 (819)
Q Consensus 449 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (819)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHH
Q 003446 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHI 608 (819)
Q Consensus 529 ~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 608 (819)
.....++.||++||...... -...+.||||+|||++|+++++ ++.|..++|||||||||
T Consensus 198 ----------~g~~~~~~~S~~G~~~~~g~-~~~~~~~~di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~v 256 (310)
T 2ixt_A 198 ----------NGTYRVADYSSRGYISTAGD-YVIQEGDIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHV 256 (310)
T ss_dssp ----------TTEEEECTTSCCCCTTTTTS-SSCCTTCCCEEEECSSEEEECT----------TSSEEEECSHHHHHHHH
T ss_pred ----------CCCeeeccccCCCCccCCcc-ccccCCCeeEECCCCCEeeecC----------CCCEEeeccHHHHHHHH
Confidence 00014678999998542100 0012459999999999999984 45899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccc
Q 003446 609 AGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSA 670 (819)
Q Consensus 609 AG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~ 670 (819)
||++|||+|++|+|++.+||++|++||++++..+.. ......++.+|+|++|+
T Consensus 257 aG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~---------~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 257 SGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY---------GAAIGDDYASGFGFARV 309 (310)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST---------TCCSSSBTTTBTCBCCC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCc---------ccccCCccccccceeec
Confidence 999999999999999999999999999987644320 12345667899999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=438.29 Aligned_cols=275 Identities=24% Similarity=0.321 Sum_probs=217.8
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
..|+++ +|+. ...++||+|||||||||++||+|.++ .+.+..++..+
T Consensus 7 i~G~~~-aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~---------------------------~~~~~~~~~~~- 53 (306)
T 4h6w_A 7 IPGLKK-LWSE----TRGDPKICVAVLDGIVDQNHPCFIGA---------------------------DLTRLPSLVSG- 53 (306)
T ss_dssp CTTHHH-HHHH----CSCCTTCEEEEESSCCCTTSGGGTTC---------------------------EEEECC------
T ss_pred CcCHHH-HHhh----hCCCCCCEEEEEcCCCCCCChhHcCC---------------------------cccCCCcccCC-
Confidence 446665 9998 34558999999999999999999976 12222222221
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC--CCHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV--GTLADVIAAIDQ 293 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g--~~~~~i~~ai~~ 293 (819)
+.....|.+||||||||||+|+.+ +.+.||||+|+|+.+|++.+.+ ....+++++|+|
T Consensus 54 ----------~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~ 113 (306)
T 4h6w_A 54 ----------EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQ 113 (306)
T ss_dssp ---------------CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHH
T ss_pred ----------CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccccccchHHHHHHHHHH
Confidence 112334678999999999999753 2358999999999999997643 677889999999
Q ss_pred HHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeE
Q 003446 294 ATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSL 373 (819)
Q Consensus 294 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~ 373 (819)
|++++++|||+|||..... ......++.+++.+.++|++||+||||+|......|+..+++|+|||++..
T Consensus 114 a~~~g~~vi~~s~g~~~~~---~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------- 183 (306)
T 4h6w_A 114 AVNNGANIINVSAGQLTDA---GEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------- 183 (306)
T ss_dssp HHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-------
T ss_pred hhcccceeeeccccccccC---CCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-------
Confidence 9999999999999964322 123467888999999999999999999998877778888899999874211
Q ss_pred EeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCcc
Q 003446 374 LLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTS 453 (819)
Q Consensus 374 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~ 453 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccce
Q 003446 454 TLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGR 533 (819)
Q Consensus 454 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (819)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHH
Q 003446 534 VASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAA 613 (819)
Q Consensus 534 ~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aA 613 (819)
+.+++||++|+. ..||||+|||++|+|+++ ++.|..++|||||||||||++|
T Consensus 184 --------~~~~~~s~~g~~----------~~~~di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~~A 235 (306)
T 4h6w_A 184 --------GKPVDFSNWGDA----------YQKQGILAPGKDILGAKP----------NGGTIRLSGTSFATPIVSGVAA 235 (306)
T ss_dssp --------SCBCSSSCBCHH----------HHHHEEEEECSSEEEECT----------TSCEEEECSHHHHHHHHHHHHH
T ss_pred --------CCccccccccCC----------cCcceeecCCcCcccccC----------CCceeccCCCcchhHHHHHHHH
Confidence 245678888875 368899999999999984 4589999999999999999999
Q ss_pred HHHHh----CCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 614 LIKQH----NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 614 Ll~q~----~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
||+++ +|.|+|+|||++|++||+++...+. .....||+|+||+.+|++
T Consensus 236 ll~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~--------------~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 236 LLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT--------------DDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC--------------SCGGGGTTCBCCHHHHHH
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC--------------CCCCCcceeecCHHHHHH
Confidence 99864 6999999999999999998754432 223469999999999986
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=433.15 Aligned_cols=267 Identities=28% Similarity=0.446 Sum_probs=219.7
Q ss_pred cCCCcccccccCCCCCCCC--CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccc
Q 003446 137 LGLPQGVWTQRGGDKNAGE--GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAG 214 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~ 214 (819)
++++. +|.. + +|+ ||+|||||||||++||+|.++ +..+++|..+
T Consensus 15 i~~~~-aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~----------------------------~~~~~~~~~~ 60 (320)
T 2z30_A 15 VKAPS-VWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAAN----------------------------IAWCVSTLRG 60 (320)
T ss_dssp TTCGG-GTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGG----------------------------EEEEEECGGG
T ss_pred cChHH-HHHh----c-CCCcCCeEEEEECCCCCCCChhHhcc----------------------------cccCccccCC
Confidence 45554 7876 3 899 999999999999999999974 5566666543
Q ss_pred hhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHH
Q 003446 215 AQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQ 293 (819)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~ 293 (819)
.. ..+..+..|..||||||||||+|..+ + ..+.||||+|+|+.+|+++..| +..++++++|+|
T Consensus 61 ~~-------~~~~~~~~d~~gHGT~vAgiia~~~n------~---~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~ 124 (320)
T 2z30_A 61 KV-------STKLRDCADQNGHGTHVIGTIAALNN------D---IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQ 124 (320)
T ss_dssp CC-------BCCHHHHBCSSSHHHHHHHHHHCCSS------S---BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHH
T ss_pred cc-------CCCCCCCCCCCCCHHHHHHHHHcccC------C---CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHH
Confidence 10 00001235789999999999999732 1 2357999999999999998877 778899999999
Q ss_pred HHhC--------------------CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccC
Q 003446 294 ATMD--------------------GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSY 353 (819)
Q Consensus 294 a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ 353 (819)
|+++ +++|||||||.... ...+..+++++.++|++||+||||+|.....+|+.
T Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~ 197 (320)
T 2z30_A 125 AILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAA 197 (320)
T ss_dssp HHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTT
T ss_pred HHhCcccccccccccccccccccCCceEEEecCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCccc
Confidence 9987 99999999997542 25778889999999999999999999887788888
Q ss_pred CcceEEEccccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCC
Q 003446 354 SPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPS 433 (819)
Q Consensus 354 ~p~vitVgAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 433 (819)
.|++|+|||++.+
T Consensus 198 ~~~vi~Vga~~~~------------------------------------------------------------------- 210 (320)
T 2z30_A 198 YPEVIAVGAIDSN------------------------------------------------------------------- 210 (320)
T ss_dssp STTEEEEEEECTT-------------------------------------------------------------------
T ss_pred CCCeEEEEeeCCC-------------------------------------------------------------------
Confidence 9999999974211
Q ss_pred ccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccc
Q 003446 434 LVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTH 513 (819)
Q Consensus 434 ~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~ 513 (819)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCC
Q 003446 514 RDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGC 593 (819)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~ 593 (819)
+.++.||++|| +|+|||++|+++++ ++
T Consensus 211 ----------------------------~~~~~~S~~g~---------------~v~APG~~i~s~~~----------~~ 237 (320)
T 2z30_A 211 ----------------------------DNIASFSNRQP---------------EVSAPGVDILSTYP----------DD 237 (320)
T ss_dssp ----------------------------SCBCTTSCSSC---------------SEEEECSSEEEEET----------TT
T ss_pred ----------------------------CCcCcccCCCC---------------CEEeCCCCeEEecc----------CC
Confidence 24678999986 68999999999984 45
Q ss_pred cceecccccchhhHHHHHHHHHHHhC-------------CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCC
Q 003446 594 NFALLSGTSMATPHIAGIAALIKQHN-------------PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTH 660 (819)
Q Consensus 594 ~y~~~sGTSMAaP~VAG~aALl~q~~-------------P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~ 660 (819)
.|..++|||||||||||++|||+|++ |+|++.+||++|++||+++...+ .+
T Consensus 238 ~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g----------------~~ 301 (320)
T 2z30_A 238 SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG----------------WD 301 (320)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSS----------------SB
T ss_pred CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCC----------------CC
Confidence 89999999999999999999999998 99999999999999999875332 24
Q ss_pred cccccccccccccCCC
Q 003446 661 FDFGSGLVSATRALDP 676 (819)
Q Consensus 661 ~~~GaG~vn~~~Al~~ 676 (819)
..||+|+||+.+|++.
T Consensus 302 ~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 302 ADYGYGVVRAALAVQA 317 (320)
T ss_dssp TTTBTCBCCHHHHHHH
T ss_pred CCcCCceeCHHHHHHH
Confidence 5799999999999863
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-49 Score=432.09 Aligned_cols=273 Identities=21% Similarity=0.177 Sum_probs=217.4
Q ss_pred cCCCcccccccCCCCCCCC--CeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccc
Q 003446 137 LGLPQGVWTQRGGDKNAGE--GIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAG 214 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~--gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~ 214 (819)
+++++ +|+. ++|+ ||+||||||||| +||+|.++ ++.+++|..+
T Consensus 30 i~~~~-aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~----------------------------~~~~~~~~~~ 74 (347)
T 2iy9_A 30 IGLTE-TTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDS----------------------------EFAKFSFTQD 74 (347)
T ss_dssp HTCCH-HHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTC----------------------------EEEEEECBTT
T ss_pred CChHH-HHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcC----------------------------cccCCcccCC
Confidence 45554 8876 6899 999999999999 99999875 5556666543
Q ss_pred hhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHH
Q 003446 215 AQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQA 294 (819)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a 294 (819)
. ...+...+.|..||||||||||+|+. .+.||||+|+|+.+|++++.+.. ++++||+||
T Consensus 75 ~-------~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a 133 (347)
T 2iy9_A 75 G-------SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD--SWIRAIESI 133 (347)
T ss_dssp C-------CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT--HHHHHHHHH
T ss_pred C-------CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH--HHHHHHHHH
Confidence 1 00111245578899999999999972 24799999999999999875543 899999999
Q ss_pred HhC------CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCC-------CCCcccCCc------
Q 003446 295 TMD------GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPA-------PSTVVSYSP------ 355 (819)
Q Consensus 295 ~~~------g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~-------~~~~~~~~p------ 355 (819)
+++ |++|||||||..... .....++.+++.+.++|++||+||||+|.. ....|+..+
T Consensus 134 ~~~~~~~~~~~~Vin~S~G~~~~~----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~ 209 (347)
T 2iy9_A 134 MSNVFLAPGEEKIINISGGQKGVA----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVN 209 (347)
T ss_dssp HTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHH
T ss_pred HhhhhcccCCceEEEeccccCCCC----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccc
Confidence 999 999999999975422 234688899999999999999999999985 345566677
Q ss_pred ----ceEEEccccc--cceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCC
Q 003446 356 ----WAVAAAACTT--DRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEA 429 (819)
Q Consensus 356 ----~vitVgAs~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 429 (819)
++|+|||++. +...
T Consensus 210 ~~~~~vi~Vga~~~~~~g~~------------------------------------------------------------ 229 (347)
T 2iy9_A 210 KKQDPVIRVAALAQYRKGET------------------------------------------------------------ 229 (347)
T ss_dssp HHTCCEEEEEEECCCCTTSC------------------------------------------------------------
T ss_pred cccCCEEEEEEcccCCCCce------------------------------------------------------------
Confidence 8888887542 1000
Q ss_pred CCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHh
Q 003446 430 FEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYE 509 (819)
Q Consensus 430 ~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~ 509 (819)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccccCCCcceeeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCC
Q 003446 510 QQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM 589 (819)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~ 589 (819)
....+.++.||++||+ ||||+|||++|+++++
T Consensus 230 ----------------------------~~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~~-------- 261 (347)
T 2iy9_A 230 ----------------------------PVLHGGGITGSRFGNN------------WVDIAAPGQNITFLRP-------- 261 (347)
T ss_dssp ----------------------------CCBCCCSSSCBCBCTT------------TCSEEEECSSEEEECT--------
T ss_pred ----------------------------ecccCCCCCCCCCCCC------------CCEEEeCCCCeEeecC--------
Confidence 0000246799999983 5599999999999984
Q ss_pred cCCCcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCccccccccc
Q 003446 590 LTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVS 669 (819)
Q Consensus 590 ~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn 669 (819)
++.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+ ...+|+|+||
T Consensus 262 --~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~-----------------~~~~G~G~ld 322 (347)
T 2iy9_A 262 --DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV-----------------DKVTEGRVLN 322 (347)
T ss_dssp --TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT-----------------TTSGGGEECC
T ss_pred --CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC-----------------CccccCCEec
Confidence 458999999999999999999999999999999999999999999875432 2479999999
Q ss_pred ccccCCC
Q 003446 670 ATRALDP 676 (819)
Q Consensus 670 ~~~Al~~ 676 (819)
+.+|++.
T Consensus 323 ~~~A~~~ 329 (347)
T 2iy9_A 323 AEKAISM 329 (347)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=440.59 Aligned_cols=294 Identities=26% Similarity=0.334 Sum_probs=226.9
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceecc------CCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEE
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINP------SHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSAR 209 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~ 209 (819)
.++++. +|... +++|+||+|||||||||+ .||+|.++ +...+
T Consensus 7 ~i~~~~-~~~~~---g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~----------------------------i~~~~ 54 (434)
T 1wmd_A 7 IVKADV-AQSSY---GLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK----------------------------ITALY 54 (434)
T ss_dssp HTTHHH-HHHHH---CCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC----------------------------EEEEE
T ss_pred hhCchh-hhhcc---CCCCcccEEEEEecCcCCCCCCcccCcccCCC----------------------------Eeeec
Confidence 456655 88732 689999999999999999 79999864 55566
Q ss_pred EcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCC---CHHH
Q 003446 210 FFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVG---TLAD 286 (819)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~---~~~~ 286 (819)
+|.+. ..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++..|. ..++
T Consensus 55 ~~~~~-------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~ 110 (434)
T 1wmd_A 55 ALGRT-------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSN 110 (434)
T ss_dssp ETTTT-------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSS
T ss_pred cccCC-------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHH
Confidence 66432 3567889999999999999642 2579999999999999987663 4567
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHH-HhCCcEEEEeCCCCCCCCC--CcccCCcceEEEccc
Q 003446 287 VIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFA-RRAGVFVVQAAGNQGPAPS--TVVSYSPWAVAAAAC 363 (819)
Q Consensus 287 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgAs 363 (819)
+.++|+||+++|++|||||||..... ......++++++ .++|++||+||||+|.... ..|+.++++|+|||+
T Consensus 111 ~~~ai~~a~~~g~~Vin~S~G~~~~~-----~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~ 185 (434)
T 1wmd_A 111 LQTLFSQAYSAGARIHTNSWGAAVNG-----AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGAT 185 (434)
T ss_dssp HHHHHHHHHHTTCSEEEECCCBCCTT-----CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEecCCCCcCC-----cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecc
Confidence 99999999999999999999976421 113445555555 6899999999999998643 457788999999997
Q ss_pred cccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEE
Q 003446 364 TTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICT 443 (819)
Q Consensus 364 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~ 443 (819)
+..+...
T Consensus 186 ~~~~~~~------------------------------------------------------------------------- 192 (434)
T 1wmd_A 186 ENLRPSF------------------------------------------------------------------------- 192 (434)
T ss_dssp CCSCGGG-------------------------------------------------------------------------
T ss_pred cccCccc-------------------------------------------------------------------------
Confidence 5321100
Q ss_pred ecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeee
Q 003446 444 FSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKF 523 (819)
Q Consensus 444 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 523 (819)
+.
T Consensus 193 -------~~----------------------------------------------------------------------- 194 (434)
T 1wmd_A 193 -------GS----------------------------------------------------------------------- 194 (434)
T ss_dssp -------CG-----------------------------------------------------------------------
T ss_pred -------Cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred ceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCC--CcCCCcceecccc
Q 003446 524 NAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP--MLTGCNFALLSGT 601 (819)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGT 601 (819)
+....+.++.||||||+.+ +++||||+|||++|+++++....... ...++.|..++||
T Consensus 195 -------------~~~~~~~~a~fS~~G~~~~-------g~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGT 254 (434)
T 1wmd_A 195 -------------YADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGT 254 (434)
T ss_dssp -------------GGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSH
T ss_pred -------------ccCCCCccccccCCCCCCC-------CCCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecch
Confidence 0001246899999999986 79999999999999999864321000 0014589999999
Q ss_pred cchhhHHHHHHHHHHHhCCCC-----CHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 602 SMATPHIAGIAALIKQHNPSW-----TPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 602 SMAaP~VAG~aALl~q~~P~~-----sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
|||||||||++|||+|++|++ ++++||++|++||+++.. ..+.+.||+|+||+.+|++.
T Consensus 255 S~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~----------------~~~~~~~G~G~vd~~~a~~~ 318 (434)
T 1wmd_A 255 SMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL----------------GYPNGNQGWGRVTLDKSLNV 318 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS----------------CSSCTTTTTCBCCHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC----------------CCCCccCCcCeEeHHHhccc
Confidence 999999999999999998875 899999999999987532 23456899999999999975
Q ss_pred C
Q 003446 677 G 677 (819)
Q Consensus 677 ~ 677 (819)
.
T Consensus 319 ~ 319 (434)
T 1wmd_A 319 A 319 (434)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=427.42 Aligned_cols=302 Identities=26% Similarity=0.312 Sum_probs=219.4
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCC-CCCCCCCCCCCCcc-ccCCCCCCCCCCCceEEEEEcccc
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANY-NPFEPNISHFSGDC-ETGPRFPLSSCNGKIVSARFFSAG 214 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~n~ki~g~~~~~~~ 214 (819)
++++. +|+. +++|+||+||||||||+ +||+|.++ ...+..... ..+ ..+..... +..-.. ++.+.
T Consensus 19 i~~~~-aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~~~~~~~~--~~~~~d~~~~~~----~~~~~~-~~~~~ 85 (340)
T 3lpc_A 19 VKADK-VWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLPGYDFISN--SQISLDGDGRDA----DPFDEG-DWFDN 85 (340)
T ss_dssp CCHHH-HHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCCCEECCCC--HHHHCSSSSSBS----CCBCCC-CCBCT
T ss_pred CCHHH-HHHh----cCCCCCeEEEEEcCCCC-CChhhhcccccCccccCC--ccccccCCCccC----Cccccc-ccccc
Confidence 44444 8887 79999999999999998 99999976 111110000 000 00000000 000000 00000
Q ss_pred hhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHH
Q 003446 215 AQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQA 294 (819)
Q Consensus 215 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a 294 (819)
... .....+.....|..||||||||||+|...+. ..+.||||+|+|+.+|+++..++..++++++|+||
T Consensus 86 ~~~---~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a 154 (340)
T 3lpc_A 86 WAC---GGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRCGGYDSDISDGLYWA 154 (340)
T ss_dssp TTT---SCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHH
T ss_pred ccc---cCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCCCCcHHHHHHHHHHH
Confidence 000 0011112345688999999999999975432 23589999999999999998888899999999999
Q ss_pred Hh----------CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccc
Q 003446 295 TM----------DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAAC 363 (819)
Q Consensus 295 ~~----------~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs 363 (819)
++ .+++|||||||.... ....++.+++++.++|++||+||||+|.... ..|+..+++|+|||+
T Consensus 155 ~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~ 228 (340)
T 3lpc_A 155 AGGRIAGIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGAT 228 (340)
T ss_dssp HTCCCTTSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEE
T ss_pred hcccccccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecC
Confidence 98 899999999997432 2356788899999999999999999997653 356778889999874
Q ss_pred cccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEE
Q 003446 364 TTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICT 443 (819)
Q Consensus 364 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~ 443 (819)
+.+
T Consensus 229 ~~~----------------------------------------------------------------------------- 231 (340)
T 3lpc_A 229 TSR----------------------------------------------------------------------------- 231 (340)
T ss_dssp CTT-----------------------------------------------------------------------------
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 211
Q ss_pred ecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeee
Q 003446 444 FSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKF 523 (819)
Q Consensus 444 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 523 (819)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccc
Q 003446 524 NAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603 (819)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSM 603 (819)
+.++.||++||. |||+|||++|+++++..... ..++.|..++||||
T Consensus 232 ------------------~~~~~~S~~g~~-------------~di~ApG~~i~s~~~~~~~~---~~~~~~~~~sGTS~ 277 (340)
T 3lpc_A 232 ------------------GIRASFSNYGVD-------------VDLAAPGQDILSTVDSGTRR---PVSDAYSFMAGTSM 277 (340)
T ss_dssp ------------------SSBCTTCCBSTT-------------CCEEEECSSEEEEEESCSSS---CCSEEEEEECSHHH
T ss_pred ------------------CCcCCCCCCCCC-------------ceEEecCCCeecccCCCCcC---CCCCcceecccHhH
Confidence 246889999974 49999999999998754321 12346999999999
Q ss_pred hhhHHHHHHHHHHHh-C---CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 604 ATPHIAGIAALIKQH-N---PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 604 AaP~VAG~aALl~q~-~---P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
|||||||++|||+|+ + |.|++++||++|++||+++.. .....+|+|+||+.+|++.
T Consensus 278 AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~-----------------~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 278 ATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG-----------------RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS-----------------CCSSCCCSSBCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC-----------------CCCCCcccceecHHHHHHH
Confidence 999999999999998 5 999999999999999987631 1245799999999999864
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-47 Score=403.33 Aligned_cols=233 Identities=32% Similarity=0.448 Sum_probs=200.4
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||||||++||+|.++ +..+++|.+.
T Consensus 21 aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~----------------------------~~~~~~~~~~-------- 60 (284)
T 1sh7_A 21 NYNA----NFDGFGVTAYVIDTGVNNNHEEFGGR----------------------------SVSGYDFVDN-------- 60 (284)
T ss_dssp BCCC----SCCCTTCEEEEEESCCCTTCTTTTTC----------------------------EEEEEETTTT--------
T ss_pred hhhc----CCCCCCCEEEEEcCCCCCCChhHcCC----------------------------ccccccccCC--------
Confidence 6776 78999999999999999999999964 5566677643
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC--CC
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD--GV 299 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~ 299 (819)
...+.|..+|||||||||+|.. .||||+|+|+.+|++++.+ +..+++++||+|++++ ++
T Consensus 61 ----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~ 122 (284)
T 1sh7_A 61 ----DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGP 122 (284)
T ss_dssp ----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSS
T ss_pred ----CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCC
Confidence 1346788999999999999873 5999999999999999876 7888999999999984 79
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
+|||||||... ...++.+++++.++|++||+||||+|.... ..|+..|++|+|||++.+
T Consensus 123 ~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 182 (284)
T 1sh7_A 123 SVANMSLGGGQ--------STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS------------ 182 (284)
T ss_dssp EEEEECCCBSC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT------------
T ss_pred cEEEeCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC------------
Confidence 99999999752 367888999999999999999999997543 456778899999874211
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|+
T Consensus 183 ---~~~~~~S~~G~~~-------------di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~ 236 (284)
T 1sh7_A 183 ---DSRSSFSNWGSCV-------------DLFAPGSQIKSAWY----------DGGYKTISGTSMATPHVAGVAALYLQE 236 (284)
T ss_dssp ---SBBCTTCCBSTTC-------------CEEEECSSEEEECT----------TSSEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcCcccCCCCcc-------------EEEeccCCeEEecC----------CCCEEEccChHHHHHHHHHHHHHHHHH
Confidence 2468899999865 99999999999984 458999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccc
Q 003446 619 NPSWTPTMIASAISSTATKYD 639 (819)
Q Consensus 619 ~P~~sp~~ik~~L~~TA~~~~ 639 (819)
+|+|+++|||++|++||++..
T Consensus 237 ~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 237 NNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CTTCCHHHHHHHHHHHSEESC
T ss_pred CCCCCHHHHHHHHHhhCccCC
Confidence 999999999999999998764
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=453.29 Aligned_cols=357 Identities=23% Similarity=0.267 Sum_probs=243.6
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC---CCHHHHHHHHHHHHh-----CCCcEE
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV---GTLADVIAAIDQATM-----DGVDIL 302 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~a~~-----~g~dVI 302 (819)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++..+ ....+++.+|.+|++ +|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999985 21 3468999999999999998754 245677777777777 799999
Q ss_pred EeCCCCCCCCCCccccccHHHHHHHHHH-hCCcEEEEeCCCCCCCCCC--cccC--CcceEEEccccccceeeeeEEeCC
Q 003446 303 TLSIGPDEPPRDTITMLGIFDVLMLFAR-RAGVFVVQAAGNQGPAPST--VVSY--SPWAVAAAACTTDRIYPGSLLLGN 377 (819)
Q Consensus 303 n~SlG~~~~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g~~~~~--~~~~--~p~vitVgAs~~~~~~~~~~~~~~ 377 (819)
|||||...... ..+.+..++.++. ++|++||+||||+|+...+ .|+. ++++|+|||++.+......
T Consensus 338 NmS~G~~~~~~----~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~----- 408 (1354)
T 3lxu_X 338 NMSYGEHANWS----NSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAE----- 408 (1354)
T ss_dssp EECCCCCCSCS----SCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC------
T ss_pred EcCCccCCCCC----ccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccc-----
Confidence 99999875432 2356777887775 8999999999999986543 4553 7999999997543210000
Q ss_pred CeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHH
Q 003446 378 GLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTA 457 (819)
Q Consensus 378 g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~ 457 (819)
|. .
T Consensus 409 --------------------ys---------------------~------------------------------------ 411 (1354)
T 3lxu_X 409 --------------------YA---------------------M------------------------------------ 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------cc---------------------c------------------------------------
Confidence 00 0
Q ss_pred HHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeec
Q 003446 458 VINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASF 537 (819)
Q Consensus 458 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (819)
.
T Consensus 412 -------------------------------------------------------------------------------~ 412 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------R 412 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHH
Q 003446 538 EGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQ 617 (819)
Q Consensus 538 ~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q 617 (819)
....+.++.||||||+.+ +++||||+|||++|+++... .++.|..++|||||||||||++|||++
T Consensus 413 ~~~~g~~asFSS~GPt~d-------g~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLS 477 (1354)
T 3lxu_X 413 EKLPGNVYTWTSRDPCID-------GGQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLIS 477 (1354)
T ss_dssp -----CCCCCCCCSCCSS-------SSCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHH
T ss_pred cCCCCccccccCCCCCcc-------CCCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHH
Confidence 001146899999999986 69999999999999998542 235899999999999999999999986
Q ss_pred ----hCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCCCeEEeccchhhHHhhhc
Q 003446 618 ----HNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGLVLSVEFEDYISFLCS 693 (819)
Q Consensus 618 ----~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~~lv~d~~~~~~~~~~~~ 693 (819)
++|+|++.+||++|++||+++.. .+++.||+|+||+.+|++..+.++....+++.|+|.
T Consensus 478 alkq~~P~LTp~qVk~lL~~TA~~~~~-----------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~ 540 (1354)
T 3lxu_X 478 GLKQQNIEYSPYSIKRAISVTATKLGY-----------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVR 540 (1354)
T ss_dssp HHHHTTCCCCHHHHHHHHHTTSBCCTT-----------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEE
T ss_pred hhHhhCCCCCHHHHHHHHHHhCccCCC-----------------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEE
Confidence 79999999999999999988642 234679999999999999888888888899999998
Q ss_pred cCCCCccceeeccccccccCCCCCCCCCCCcEEEecccceEEEEEEEEEec----C--Cc--eeEE--EEEeCCCCceEE
Q 003446 694 LADSDPVSIKAATGIWCNHSLSHPANLNLPSVTVSAVAKSLILQRSLKNVG----N--KT--ETYL--TSVVHPNGTTVS 763 (819)
Q Consensus 694 ~~~~~~~~i~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~N~g----~--~~--~ty~--~~~~~~~g~~v~ 763 (819)
.+..+...|.... .. .....+++++|+-+- . .. ..|. +...... --|+
T Consensus 541 v~~~~~rgIylR~-------------~~--------~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~ 598 (1354)
T 3lxu_X 541 VGNNADKGIHLRQ-------------GV--------QRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ 598 (1354)
T ss_dssp ETTTTBSSEEECS-------------SC--------CCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE
T ss_pred ecCCCCCceEEec-------------cc--------cCCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee
Confidence 7653333332110 00 112233333333221 1 11 1111 1111111 0123
Q ss_pred EeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeC----CccEEEEeEEEEeee
Q 003446 764 LYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGS----LNHIVRIPLSVKPVS 817 (819)
Q Consensus 764 ~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~----~~~~l~~P~~~~~~~ 817 (819)
+ |..+.+ .++.++|.|.+++.......+++.|..... .+...|||+.|....
T Consensus 599 ~-p~~l~l-~~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P~ 654 (1354)
T 3lxu_X 599 C-GAFLDL-SYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPH 654 (1354)
T ss_dssp E-CSCEEC-TTSCEEEEEEECGGGCCSEEEEEEEEEEESSCTTSCCSEEEEEEEEECB
T ss_pred c-ccceee-cCCCceEEEEECCCCCCCcceeEEEEEEEcCCcccCceEEeeEEEEeee
Confidence 2 555655 678899999999887777788899987652 367899999886543
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-46 Score=397.44 Aligned_cols=235 Identities=29% Similarity=0.403 Sum_probs=200.1
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||||||++||+|.++ +..+++|.++
T Consensus 23 ~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~----------------------------~~~~~d~~~~-------- 62 (278)
T 2b6n_A 23 NYHT----DYDGSGVTAFVIDTGVLNTHNEFGGR----------------------------ASSGYDFIDN-------- 62 (278)
T ss_dssp EEEC----SCCCTTCEEEEEESCCCTTCGGGTTC----------------------------EEEEEETTTT--------
T ss_pred hccc----CCCCCCCEEEEEeCCCCCCChhHhcc----------------------------cccCeecCCC--------
Confidence 6776 78999999999999999999999875 5556666543
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHh--CCC
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATM--DGV 299 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~--~g~ 299 (819)
..++.|..+|||||||||+|.. .||||+|+|+.+|++++.+ +..++++++|+|+++ .++
T Consensus 63 ----~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~ 124 (278)
T 2b6n_A 63 ----DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGP 124 (278)
T ss_dssp ----BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSS
T ss_pred ----CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCC
Confidence 1346788999999999999862 5999999999999999876 788999999999998 599
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
+|||||||... .+.++.+++++.++|++||+||||+|.... ..|+..+++|+|||++.+
T Consensus 125 ~Vin~S~G~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------ 184 (278)
T 2b6n_A 125 AVANMSLGGGA--------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN------------ 184 (278)
T ss_dssp EEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------
T ss_pred eEEEECCCCCc--------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC------------
Confidence 99999999743 357888999999999999999999997653 346678889999874211
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
+.++.||++||.+ ||+|||++|++++... ++.|..++|||||||||||++|||+|+
T Consensus 185 ---~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~ 240 (278)
T 2b6n_A 185 ---DSRSSFSNYGTCL-------------DIYAPGSSITSSWYTS--------NSATNTISGTSMASPHVAGVAALYLDE 240 (278)
T ss_dssp ---SBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ---CCcCCcCCCCCCC-------------eEEeCCCCeECcccCC--------CCCEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 2467899999865 9999999999998532 348999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccc
Q 003446 619 NPSWTPTMIASAISSTATKYD 639 (819)
Q Consensus 619 ~P~~sp~~ik~~L~~TA~~~~ 639 (819)
+|+|++.|||++|++||++..
T Consensus 241 ~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 241 NPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp CTTCCHHHHHHHHHHHSEESC
T ss_pred CCCCCHHHHHHHHHHhCccCC
Confidence 999999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=397.32 Aligned_cols=235 Identities=31% Similarity=0.390 Sum_probs=201.1
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||||||++||+|.++ +...++|..
T Consensus 23 a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~----------------------------~~~~~~~~~--------- 61 (276)
T 4dzt_A 23 SYTY----TATGRGVNVYVIDTGIRTTHREFGGR----------------------------ARVGYDALG--------- 61 (276)
T ss_dssp CEEC----SCCCTTCEEEEEESCCCTTCGGGTTC----------------------------EEEEEETTS---------
T ss_pred ceec----CCCCCCcEEEEEccCCCCCChhHccC----------------------------eeccccCCC---------
Confidence 7776 78999999999999999999999875 455555543
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC--CC
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD--GV 299 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~--g~ 299 (819)
..+.|.+||||||||||+|.. .||||+|+|+.+|++++.+ +..++++++++|++++ ++
T Consensus 62 -----~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~ 122 (276)
T 4dzt_A 62 -----GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRP 122 (276)
T ss_dssp -----SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSS
T ss_pred -----CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCC
Confidence 345678999999999999872 5999999999999999877 7889999999999997 89
Q ss_pred cEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC-cccCCcceEEEccccccceeeeeEEeCCC
Q 003446 300 DILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST-VVSYSPWAVAAAACTTDRIYPGSLLLGNG 378 (819)
Q Consensus 300 dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgAs~~~~~~~~~~~~~~g 378 (819)
+|||||||... ...++.+++++.++|+++|+||||+|..... .|+..+++|+|||++.
T Consensus 123 ~vin~S~g~~~--------~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 181 (276)
T 4dzt_A 123 AVANMSLGGGV--------STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS------------- 181 (276)
T ss_dssp EEEEECCCEEC--------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------
T ss_pred eEEEECCCCCC--------CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC-------------
Confidence 99999999642 3678899999999999999999999976543 3667788888887421
Q ss_pred eEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHH
Q 003446 379 LKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAV 458 (819)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~ 458 (819)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeecc
Q 003446 459 INTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFE 538 (819)
Q Consensus 459 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (819)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHh
Q 003446 539 GRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618 (819)
Q Consensus 539 ~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 618 (819)
.+.++.||++||.. ||+|||++|++++... +..|..++|||||||||||++|||+|+
T Consensus 182 --~~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~~--------~~~~~~~sGTS~AaP~vaG~aAll~~~ 238 (276)
T 4dzt_A 182 --SDARASFSNYGSCV-------------DLFAPGASIPSAWYTS--------DTATQTLNGTSMATPHVAGVAALYLEQ 238 (276)
T ss_dssp --TSBBCTTCCBSTTC-------------CEEEECSSEEEECTTS--------SSCEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcCCcCCCCCCc-------------eEEeCCCCeEccccCC--------CCceEEeeEHHHHHHHHHHHHHHHHHH
Confidence 13578899999876 8999999999998643 347999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcccccccC
Q 003446 619 NPSWTPTMIASAISSTATKYDNY 641 (819)
Q Consensus 619 ~P~~sp~~ik~~L~~TA~~~~~~ 641 (819)
+|+++++|||++|++||++....
T Consensus 239 ~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 239 NPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp CTTCCHHHHHHHHHHHSEESCCB
T ss_pred CCCCCHHHHHHHHHhhCcCCccC
Confidence 99999999999999999986543
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=398.89 Aligned_cols=224 Identities=30% Similarity=0.414 Sum_probs=193.8
Q ss_pred CCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCC
Q 003446 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPF 231 (819)
Q Consensus 152 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 231 (819)
.+|+||+|+|||||||++||+|.++ +..+++|.+ .+.
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~----------------------------~~~~~~~~~---------------~~~ 64 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGR----------------------------AQMVKTYYY---------------SSR 64 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC----------------------------EEEEEESSS---------------CSS
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCc----------------------------cccccCCCC---------------CCC
Confidence 7899999999999999999999875 445555541 245
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCCC-------cEEE
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDGV-------DILT 303 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g~-------dVIn 303 (819)
|.++|||||||||+|+ ..||||+|+|+.+|++++.+ +..++++++|+|++++++ +|||
T Consensus 65 d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin 130 (279)
T 2pwa_A 65 DGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVAS 130 (279)
T ss_dssp CSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEE
T ss_pred CCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEE
Confidence 7899999999999986 26999999999999999877 888999999999999987 9999
Q ss_pred eCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEEeCCCeEEe
Q 003446 304 LSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG 382 (819)
Q Consensus 304 ~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~ 382 (819)
||||.. ..+.++.+++++.++|++||+||||+|.... ..|+..|++|+|||++.+
T Consensus 131 ~S~G~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 186 (279)
T 2pwa_A 131 LSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY---------------- 186 (279)
T ss_dssp ECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------
T ss_pred ecCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC----------------
Confidence 999964 2367889999999999999999999998653 356778899999874211
Q ss_pred eecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHH
Q 003446 383 GVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTA 462 (819)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~ 462 (819)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCC
Q 003446 463 ITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542 (819)
Q Consensus 463 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
+
T Consensus 187 -------------------------------------------------------------------------------~ 187 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------D 187 (279)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred eeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCC
Q 003446 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSW 622 (819)
Q Consensus 543 ~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~ 622 (819)
.++.||+|||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|+ |++
T Consensus 188 ~~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll~~~-p~l 243 (279)
T 2pwa_A 188 RRSSFSNYGSVL-------------DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTL-GKT 243 (279)
T ss_dssp BBCTTCCBSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHT-TSC
T ss_pred CcCCcCCCCCcc-------------eEEEecCCeEEeec----------CCCEEEcCChHHHHHHHHHHHHHHHhC-CCC
Confidence 468899999865 99999999999984 448999999999999999999999999 999
Q ss_pred CHHHHHHHHHhcccccc
Q 003446 623 TPTMIASAISSTATKYD 639 (819)
Q Consensus 623 sp~~ik~~L~~TA~~~~ 639 (819)
+|.|||++|++||++..
T Consensus 244 t~~~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 244 TAASACRYIADTANKGD 260 (279)
T ss_dssp CTTTHHHHHHHHSEESC
T ss_pred CHHHHHHHHHHhCcccc
Confidence 99999999999998753
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-46 Score=424.09 Aligned_cols=296 Identities=20% Similarity=0.202 Sum_probs=214.7
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|.. +++|+||+|||||||||++||+|.++.. + ...++|.+..
T Consensus 25 i~~~~-aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~---~-----------------------~~~~d~~~~~- 72 (471)
T 1p8j_A 25 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD---P-----------------------GASFDVNDQD- 72 (471)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC---G-----------------------GGCEETTTTB-
T ss_pred CChHH-HHhc----CCCCCCCEEEEEeCCcCCCChhHhhccC---c-----------------------cCcccccCCC-
Confidence 44444 7887 7899999999999999999999997610 0 0123343220
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM 296 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 296 (819)
....+...+.|.++|||||||||+|...++ ..+.||||+|+|+.+|+++ +..+++++|++|+++
T Consensus 73 -----~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~ 136 (471)
T 1p8j_A 73 -----PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD---GEVTDAVEARSLGLN 136 (471)
T ss_dssp -----SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSC
T ss_pred -----CCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC---CchhHHHHHHHhhhc
Confidence 001111245688999999999999975322 1357999999999999986 346789999999999
Q ss_pred -CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHH-----hCCcEEEEeCCCCCCCCCC----cccCCcceEEEcccccc
Q 003446 297 -DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFAR-----RAGVFVVQAAGNQGPAPST----VVSYSPWAVAAAACTTD 366 (819)
Q Consensus 297 -~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~~----~~~~~p~vitVgAs~~~ 366 (819)
++++|||||||..............+..+++++. .+|++||+||||+|..... ....++++|+|||++.
T Consensus 137 ~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~- 215 (471)
T 1p8j_A 137 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ- 215 (471)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT-
T ss_pred cCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC-
Confidence 9999999999975421100112234455555554 3699999999999975322 1223578888887421
Q ss_pred ceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecC
Q 003446 367 RIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSD 446 (819)
Q Consensus 367 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~ 446 (819)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeecee
Q 003446 447 GFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQ 526 (819)
Q Consensus 447 ~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 526 (819)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhh
Q 003446 527 AGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATP 606 (819)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 606 (819)
.+.++.||++||... ...+|...+||.+|+++.. .++.|..++|||||||
T Consensus 216 --------------~g~~a~~S~~g~~~~-------~~~~~~~~~~g~~i~st~~---------~~~~~~~~sGTS~AaP 265 (471)
T 1p8j_A 216 --------------FGNVPWYSEACSSTL-------ATTYSSGNQNEKQIVTTDL---------RQKCTESHTGTSASAP 265 (471)
T ss_dssp --------------TSCCCTTCCBCTTCC-------EEEECCCSTTSCCEEEEET---------TTEEEEEECSHHHHHH
T ss_pred --------------CCCcccccCCCCcce-------EEeCCCCCCCCCCEEEeeC---------CCCccccCCCcccccc
Confidence 134688999999875 3567788888899999975 2347999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 607 HIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 607 ~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
||||++|||+|++|+|++++||.+|++||++++......... .........||+|+||+.+|++.
T Consensus 266 ~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n-----~~g~~~~~~~G~G~vda~~Av~~ 330 (471)
T 1p8j_A 266 LAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN-----GVGRKVSHSYGYGLLDAGAMVAL 330 (471)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC-----TTSCEEBTTTBTCBCCHHHHHHH
T ss_pred hhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec-----CCCcccCCCCCCEEEcHhHHHHH
Confidence 999999999999999999999999999999876432211100 01112346899999999999964
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=412.21 Aligned_cols=282 Identities=20% Similarity=0.220 Sum_probs=203.1
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
.|.. +++|+||+|||||||||++||+|.++ .....+++..+. +
T Consensus 18 aw~~----~~tG~GV~VaVIDTGId~~HpdL~gr---------------------------~~~~~~~~v~~~------d 60 (546)
T 2qtw_B 18 EYQP----PDGGSLVEVYLLDTSIQSDHREIEGR---------------------------VMVTDFENVPEE------D 60 (546)
T ss_dssp ----------CCTTSEEEEEESCCCTTSTTTTTT---------------------------EEEEEEECCCCC------C
T ss_pred hccc----CCCCCCcEEEEECCCCCCCChHHccc---------------------------ccccCcccccCC------C
Confidence 5654 68999999999999999999999976 011112211100 0
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhC----
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMD---- 297 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~---- 297 (819)
.......+.|.+||||||||||+|+. .||||+|+|+.+|++++.| +..+++++||+|+++.
T Consensus 61 g~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~ 126 (546)
T 2qtw_B 61 GTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQ 126 (546)
T ss_dssp -------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHS
T ss_pred CccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhc
Confidence 00001245688999999999999873 5999999999999999877 7889999999999984
Q ss_pred --CCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-CcccCCcceEEEccccccceeeeeEE
Q 003446 298 --GVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-TVVSYSPWAVAAAACTTDRIYPGSLL 374 (819)
Q Consensus 298 --g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~ 374 (819)
+++|||||||+. +...++.+++++.++|++||+||||+|.+.. ..|+..|++|+|||++.+...
T Consensus 127 ~~g~~VINmSlGg~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~----- 193 (546)
T 2qtw_B 127 PVGPLVVLLPLAGG--------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----- 193 (546)
T ss_dssp CCSCEEEEECEEEE--------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-----
T ss_pred cCCCeEEEecCCCC--------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-----
Confidence 899999999964 2367889999999999999999999997653 347778999999986422100
Q ss_pred eCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccc
Q 003446 375 LGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTST 454 (819)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~ 454 (819)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeecccee
Q 003446 455 LTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRV 534 (819)
Q Consensus 455 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (819)
.
T Consensus 194 ------------------------------------------------------------------a------------- 194 (546)
T 2qtw_B 194 ------------------------------------------------------------------V------------- 194 (546)
T ss_dssp ------------------------------------------------------------------C-------------
T ss_pred ------------------------------------------------------------------c-------------
Confidence 0
Q ss_pred eeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHH
Q 003446 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAAL 614 (819)
Q Consensus 535 ~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 614 (819)
..-..||++||.+ ||+|||++|+++++.. ++.|..++|||||||||||++||
T Consensus 195 -------~~s~~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aAL 246 (546)
T 2qtw_B 195 -------TLGTLGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAM 246 (546)
T ss_dssp -------EETTEECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHH
T ss_pred -------cccCCcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHH
Confidence 0001278888744 9999999999998642 24799999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCcccccccc-ccc---cCCCCCccccccc--ccccccCC
Q 003446 615 IKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFE-ITS---TYNSTHFDFGSGL--VSATRALD 675 (819)
Q Consensus 615 l~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~-~~~---~~~~~~~~~GaG~--vn~~~Al~ 675 (819)
|+|++|+|+|+|||++|++||.+.......+...... ... ........+|+|+ .++..+..
T Consensus 247 lls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 247 MLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp HHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred HHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 9999999999999999999997653222111100000 000 1112456789999 88888775
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=388.23 Aligned_cols=225 Identities=29% Similarity=0.443 Sum_probs=193.0
Q ss_pred CCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCC
Q 003446 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPF 231 (819)
Q Consensus 152 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 231 (819)
.+|+||+|||||||||++||+|.++ +...++|... ..
T Consensus 29 ~~G~gv~VaViDtGvd~~h~~l~~~----------------------------~~~~~~~~~~---------------~~ 65 (279)
T 3f7m_A 29 SAGAGACVYVIDTGVEDTHPDFEGR----------------------------AKQIKSYAST---------------AR 65 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC----------------------------EEEEEECSSS---------------SS
T ss_pred CCCCCCEEEEEcCCCCCCChhhccc----------------------------cccccCCCCC---------------CC
Confidence 5999999999999999999999875 4555555432 22
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCC-------CcEEE
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDG-------VDILT 303 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~dVIn 303 (819)
|.+||||||||||+|+. .||||+|+|+.+|+++..+ +..++++++++|+++++ ++|||
T Consensus 66 d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin 131 (279)
T 3f7m_A 66 DGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVAS 131 (279)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEE
T ss_pred CCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEE
Confidence 78999999999999862 6999999999999998876 78899999999999986 89999
Q ss_pred eCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC-cccCCcceEEEccccccceeeeeEEeCCCeEEe
Q 003446 304 LSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST-VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG 382 (819)
Q Consensus 304 ~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~ 382 (819)
||||.. +...++.+++++.++|++||+||||+|..... .|+..+++|+|||++.+
T Consensus 132 ~S~g~~--------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------- 187 (279)
T 3f7m_A 132 MSLGGG--------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN---------------- 187 (279)
T ss_dssp ECCCEE--------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------
T ss_pred eCCCcC--------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC----------------
Confidence 999964 34688999999999999999999999986543 36678889999874211
Q ss_pred eecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHHH
Q 003446 383 GVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTA 462 (819)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~ 462 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCCC
Q 003446 463 ITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAP 542 (819)
Q Consensus 463 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
+
T Consensus 188 -------------------------------------------------------------------------------~ 188 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------D 188 (279)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 3
Q ss_pred eeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCCC
Q 003446 543 IVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSW 622 (819)
Q Consensus 543 ~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~ 622 (819)
.++.||++||.. ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|+
T Consensus 189 ~~~~~S~~g~~~-------------di~ApG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p~- 244 (279)
T 3f7m_A 189 VRSTFSNYGRVV-------------DIFAPGTSITSTWI----------GGRTNTISGTSMATPHIAGLAAYLFGLEGG- 244 (279)
T ss_dssp BBCTTCCBSTTC-------------CEEEECSSEEEECG----------GGCEEEECSHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCCCC-------------eEEECCCCeEeecC----------CCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-
Confidence 578899999865 99999999999984 457999999999999999999999999999
Q ss_pred CHHHHHHHHHhccccccc
Q 003446 623 TPTMIASAISSTATKYDN 640 (819)
Q Consensus 623 sp~~ik~~L~~TA~~~~~ 640 (819)
++++||++|++||++...
T Consensus 245 t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 245 SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp CTTTHHHHHHHHSEESCC
T ss_pred CHHHHHHHHHHhcccccc
Confidence 999999999999987543
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=415.08 Aligned_cols=289 Identities=18% Similarity=0.193 Sum_probs=211.0
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|.. +++|+||+|||||||||++||+|.++ .+. .++++|.+..
T Consensus 41 i~~~~-aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~--------~~~------------------~~~~d~~~~~- 88 (503)
T 2id4_A 41 INVLD-LWYN----NITGAGVVAAIVDDGLDYENEDLKDN--------FCA------------------EGSWDFNDNT- 88 (503)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEESCCCTTSTTTTTT--------BCG------------------GGCEETTTTB-
T ss_pred cChHH-HHhc----CCCCCCeEEEEEeCCCCCCChhHhhc--------ccc------------------cCcccCCCCC-
Confidence 34433 7876 79999999999999999999999986 110 1124444320
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM 296 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 296 (819)
.+.....|.+||||||||||+|...++ ..+.||||+|+|+.+|+++.. +...++++||+||++
T Consensus 89 --------~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~ 151 (503)
T 2id4_A 89 --------NLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLD 151 (503)
T ss_dssp --------SCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTT
T ss_pred --------CCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhh
Confidence 011123578899999999999975322 224799999999999999743 677889999999999
Q ss_pred CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHH-----hCCcEEEEeCCCCCCCCC--Cccc--CCcceEEEccccccc
Q 003446 297 DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFAR-----RAGVFVVQAAGNQGPAPS--TVVS--YSPWAVAAAACTTDR 367 (819)
Q Consensus 297 ~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~~--~~~~--~~p~vitVgAs~~~~ 367 (819)
++ +|||||||..............+..+++++. .+|++||+||||+|.... ..+. .++++|+|||++.
T Consensus 152 ~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~-- 228 (503)
T 2id4_A 152 VN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH-- 228 (503)
T ss_dssp TC-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT--
T ss_pred cC-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC--
Confidence 98 9999999975422111112345666776665 479999999999997532 2222 3567888886421
Q ss_pred eeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCC
Q 003446 368 IYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDG 447 (819)
Q Consensus 368 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~ 447 (819)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceee
Q 003446 448 FYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQA 527 (819)
Q Consensus 448 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 527 (819)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCcccc----CCCeEEEeecCCCCCCCCcCCCcceecccccc
Q 003446 528 GIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIA----PGHQIWAAWSPVSALDPMLTGCNFALLSGTSM 603 (819)
Q Consensus 528 ~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSM 603 (819)
.+.++.||++||.. |++| ||..|+++.. .++.|..++||||
T Consensus 229 -------------~~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~ 273 (503)
T 2id4_A 229 -------------KDLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSA 273 (503)
T ss_dssp -------------TSCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHH
T ss_pred -------------CCCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccc
Confidence 13467899999987 6666 8999999953 2458999999999
Q ss_pred hhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 604 ATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 604 AaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
|||||||++|||+|++|+|++.+||.+|++||+++.....+-.. ...........||+|+||+.+|++.
T Consensus 274 AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~----~~~~g~~~~~~~G~G~vda~~Av~~ 342 (503)
T 2id4_A 274 AAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWR----DSAMGKKYSHRYGFGKIDAHKLIEM 342 (503)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCE----ECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred cchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCce----ecCCCCccCcccCCcEecHHHHHHH
Confidence 99999999999999999999999999999999987643110000 0001112345799999999999963
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=407.12 Aligned_cols=154 Identities=20% Similarity=0.220 Sum_probs=108.2
Q ss_pred cccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccC
Q 003446 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLN 222 (819)
Q Consensus 143 ~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~ 222 (819)
+|.. +++|+||+|||||||||++||||.++. + .+.++|..+
T Consensus 62 aw~~----g~tG~GV~VaViDtGid~~HpDL~~n~--------~-------------------~~~~~~~~~-------- 102 (600)
T 3hjr_A 62 AHRT----GVLGQGVNVAVVDDGLAIAHPDLADNV--------R-------------------PGSKNVVTG-------- 102 (600)
T ss_dssp HHHH----TCSCTTCEEEEESSCCCTTCTTTGGGB--------C-------------------SCCBCTTTS--------
T ss_pred HHHc----CCCCCCeEEEEEcCCCCCCChhHhhcc--------c-------------------cCcceeecC--------
Confidence 7777 899999999999999999999999861 1 011122211
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHH-HHHHhCCCc
Q 003446 223 TSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAI-DQATMDGVD 300 (819)
Q Consensus 223 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai-~~a~~~g~d 300 (819)
..+.....|.++|||||||||||..+ + ..+.||||+|+|+.+|++++.+ +..++++.|+ +++..++++
T Consensus 103 -~~dp~p~~~~~gHGThVAGiIAa~~n------~---~g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~ 172 (600)
T 3hjr_A 103 -SDDPTPTDPDTAHGTSVSGIIAAVDN------A---IGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNR 172 (600)
T ss_dssp -SSCCCCCSTTCCHHHHHHHHHHCCSS------S---SSCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCS
T ss_pred -CCCCCCCCCCCChHHHHHHHHhEeCC------C---CCcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCC
Confidence 01112234578999999999998632 1 1257999999999999998876 6778887766 678889999
Q ss_pred EEEeCCCCCCCCCC--ccccccHHHHHHHHH--HhCCcEEEEeCCCCCC
Q 003446 301 ILTLSIGPDEPPRD--TITMLGIFDVLMLFA--RRAGVFVVQAAGNQGP 345 (819)
Q Consensus 301 VIn~SlG~~~~~~~--~~~~~~~~~~a~~~a--~~~Gi~vV~AAGN~g~ 345 (819)
|||+|||....... .......++.++..+ ..+|+++|+||||.+.
T Consensus 173 I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~ 221 (600)
T 3hjr_A 173 VFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFN 221 (600)
T ss_dssp EEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSS
T ss_pred EEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccc
Confidence 99999997543211 111122333333332 3689999999999875
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-25 Score=251.42 Aligned_cols=100 Identities=30% Similarity=0.359 Sum_probs=80.4
Q ss_pred ccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh---CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEE
Q 003446 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM---DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVV 337 (819)
Q Consensus 261 ~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV 337 (819)
.+.||||+|+|+.|++.+ ..++++.+|+||++ ++++|||||||....... ..+.+.++.++.+|..+||+||
T Consensus 273 ~~~gvAp~a~i~~~~~~~----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAPN----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWA-PASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHHCTTSEEEEEECCS----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSC-HHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccCCCCeEEEEEcCC----CCchHHHHHHHHHhcccCCCCEEEecccCCcccCC-HHHHHHHHHHHHHHHhCCeEEE
Confidence 367999999999999732 46789999999998 799999999997542111 1234577888899999999999
Q ss_pred EeCCCCCCCC--------CCcccCCcceEEEccccc
Q 003446 338 QAAGNQGPAP--------STVVSYSPWAVAAAACTT 365 (819)
Q Consensus 338 ~AAGN~g~~~--------~~~~~~~p~vitVgAs~~ 365 (819)
+||||+|... ...|+.+|+|++|||++.
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 9999999653 345778999999999764
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-22 Score=218.46 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=82.6
Q ss_pred ccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh-CCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCC
Q 003446 263 SGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM-DGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAG 341 (819)
Q Consensus 263 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAG 341 (819)
..+||+++++.|++.+..++..++++.+|+||++ ++++|||||||..........+.+.++.++++|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4578999999999987655677899999999998 899999999997531100012345788889999999999999999
Q ss_pred CCCCCCC-------------CcccCCcceEEEcccccc
Q 003446 342 NQGPAPS-------------TVVSYSPWAVAAAACTTD 366 (819)
Q Consensus 342 N~g~~~~-------------~~~~~~p~vitVgAs~~~ 366 (819)
|+|...+ ..|+.+|+|++||+++..
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 9997532 356788999999997643
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=123.99 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred ccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH--hCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeC
Q 003446 263 SGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT--MDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAA 340 (819)
Q Consensus 263 ~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~--~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AA 340 (819)
.+++++..++.|-.-+. ....+.++..+++.. .+-++|||+|||....... ..+.+.+..++..+..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~-~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLS-SAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSC-HHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccC-HHHHHHHHHHHHHHHhCCeEEEEec
Confidence 45556666654432111 111233444444433 3567899999998643211 2234567778888999999999999
Q ss_pred CCCCCCC----------CCcccCCcceEEEccccc
Q 003446 341 GNQGPAP----------STVVSYSPWAVAAAACTT 365 (819)
Q Consensus 341 GN~g~~~----------~~~~~~~p~vitVgAs~~ 365 (819)
||+|... ...|+.+|+|++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 9999753 245778999999999763
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-08 Score=85.95 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=55.9
Q ss_pred CCCCcEEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhhccCcccEEEEeeeeeeEEEEEcCHHHH
Q 003446 29 AEERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEIGSYNKLYSFKYTVNGFAVHLTPTQA 108 (819)
Q Consensus 29 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ng~~~~~~~~~~ 108 (819)
...+++|||+||+..... ..+..++++ .+.++.++|++ |+||+++++++++
T Consensus 5 ~~i~~~YIV~~k~~~~~~------------------------~~~~~~~~~----~g~~i~~~y~~-~~Gfaa~l~~~~~ 55 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKSC------------------------AKKEDVISE----KGGKLQKCFKY-VDAASATLNEKAV 55 (80)
T ss_dssp ---CCEEEEEECTTCCSH------------------------HHHHHHHHT----TTCEEEEECSS-SSEEEEECCHHHH
T ss_pred ccCCCCEEEEECCCCChH------------------------HHHHHHHHH----cCCcceEEEcc-cEEEEEEcCHHHH
Confidence 346799999999875310 012222222 23578899998 9999999999999
Q ss_pred HHHhcCCCceEEEeCccccccccC
Q 003446 109 KKLENAPQVKLVERDRRAKLMTSY 132 (819)
Q Consensus 109 ~~L~~~p~V~~v~~~~~~~~~~~~ 132 (819)
++|+++|+|++||+|..++++++.
T Consensus 56 ~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 56 EELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp HHHHTCTTEEEEEECCEEEECCC-
T ss_pred HHHHhCCCccEEEeCcEEEEeeec
Confidence 999999999999999999887653
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-08 Score=89.96 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=57.6
Q ss_pred CCCcEEEEEeCCCCccccCCCCcccccccchhhhhhhhhHHHHHHHHHHHhhcc--CcccEEEEeeeeeeEEEEEcCHHH
Q 003446 30 EERDIYLVLIEGEPLAFHGSDDKRRFDLNSDAYKGQTKRLMDSHDRILQSTLEI--GSYNKLYSFKYTVNGFAVHLTPTQ 107 (819)
Q Consensus 30 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~ng~~~~~~~~~ 107 (819)
..+++|||+|++.... ... ..|.+++..+... ...++.|+|++.|+||++++++++
T Consensus 35 ~ip~~YIV~lk~~~~~--------------~~~--------~~h~~~l~s~~~~~~~~~~i~~sY~~~~~GFaa~Lt~~~ 92 (114)
T 2w2n_P 35 RLPGTYVVVLKEETHL--------------SQS--------ERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDL 92 (114)
T ss_dssp EEEEEEEEEECTTCCH--------------HHH--------HHHHHHHHHHHHHTTCCCEEEEEECSSSSEEEEECCGGG
T ss_pred CCCCcEEEEECCCCCH--------------HHH--------HHHHHHHHHHhhhcccCCceEEEecccceEEEEEcCHHH
Confidence 4578999999986521 111 1333334333222 245789999999999999999999
Q ss_pred HHHHhcCCCceEEEeCccccc
Q 003446 108 AKKLENAPQVKLVERDRRAKL 128 (819)
Q Consensus 108 ~~~L~~~p~V~~v~~~~~~~~ 128 (819)
+++|+++|+|.+||+|+.++.
T Consensus 93 ~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 93 LELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHcCCCccEEEeCceEec
Confidence 999999999999999998764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.53 E-value=1.6e-07 Score=85.43 Aligned_cols=44 Identities=20% Similarity=0.224 Sum_probs=40.5
Q ss_pred cccEEEEeeeeeeEEEEEcCHHHHHHHhcCCCceEEEeCccccc
Q 003446 85 SYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKL 128 (819)
Q Consensus 85 ~~~~~~~~~~~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (819)
..++.++|++.|+||+++++++++++|+++|+|.+|++|..++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 35788999999999999999999999999999999999998764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.41 E-value=7.9e-07 Score=73.71 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=37.3
Q ss_pred cEEEEe-eeeeeEEEEEcCHHHHHHHhcC--CCceEEEeCccccc
Q 003446 87 NKLYSF-KYTVNGFAVHLTPTQAKKLENA--PQVKLVERDRRAKL 128 (819)
Q Consensus 87 ~~~~~~-~~~~ng~~~~~~~~~~~~L~~~--p~V~~v~~~~~~~~ 128 (819)
.+.+.| ...|+||+++++++.+++|+++ |.|.+||+|..+++
T Consensus 31 ~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 31 TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 456777 4799999999999999999999 89999999998764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.4e-05 Score=76.37 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=62.6
Q ss_pred cccccCCCCCCCCC------ccCceEEEEEecCCccCCc-cchHHHHHHHHhcCceEEEEEecCCCC--Cccc-cccCCC
Q 003446 420 YIEECQYPEAFEPS------LVQGSVVICTFSDGFYNQT-STLTAVINTAITLGFMGFILIANSHYG--DFVA-EPIPFA 489 (819)
Q Consensus 420 ~~~~C~~~~~~~~~------~~~Gkiv~~~~~~~~~~g~-~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~~~~-~~~~~~ 489 (819)
...+|.+....... ..+|||+|++| |. |+|.+|+.+|+++||.++||||+.... ...+ .+....
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~ 155 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVD 155 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCS
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCc
Confidence 35789754432211 25799999998 67 999999999999999999999985211 1112 223457
Q ss_pred CCeEEecCcchHHHHHHHHhhc
Q 003446 490 VPGILIPKVSTSEIILQYYEQQ 511 (819)
Q Consensus 490 ~p~~~i~~~~~~~~l~~~~~~~ 511 (819)
||.++| +.++|+.|++++.++
T Consensus 156 IPsv~I-s~~~G~~L~~~L~~G 176 (194)
T 3icu_A 156 IVAIMI-GNLKGTKILQSIQRG 176 (194)
T ss_dssp SEEEEE-CHHHHHHHHHHHHTT
T ss_pred eeEEEE-CHHHHHHHHHHHHCC
Confidence 998887 778899999999765
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00064 Score=54.13 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=38.3
Q ss_pred cccEEEEeeeeeeEEEEEcCHHHHHHHhcCCCceEEEeCccccc
Q 003446 85 SYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKL 128 (819)
Q Consensus 85 ~~~~~~~~~~~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (819)
+.++.++|. .+++++++++++.+++|+++|+|++||+|..++.
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 467888885 8999999999999999999999999999987753
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.003 Score=57.23 Aligned_cols=79 Identities=16% Similarity=0.177 Sum_probs=59.7
Q ss_pred cceEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEEe
Q 003446 731 AKSLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLNHIVRIP 810 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~~P 810 (819)
+.+++.+++|+|.|+.+..|++.... -.+++|.+.+|+||++..++|+|.+... ..+++.|.+.-+++..+.++
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTLNVGESMQLEVEFEPQSV--GDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEECTTCEEEEEEEECCSSS--BCCCCBCEEEESSSCEECCE
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEECCCCEEEEEEEEEcCCC--ccEEEEEEEEECCCCEEEEE
Confidence 45566777999999999998877533 3778899999999999999999998752 23456677665666777776
Q ss_pred EEEEe
Q 003446 811 LSVKP 815 (819)
Q Consensus 811 ~~~~~ 815 (819)
+.+..
T Consensus 114 L~G~~ 118 (122)
T 2ys4_A 114 LYGAA 118 (122)
T ss_dssp ECCCE
T ss_pred EEEEE
Confidence 65433
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.065 Score=59.42 Aligned_cols=75 Identities=9% Similarity=0.083 Sum_probs=55.6
Q ss_pred CCCCCCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCC--CccccccCCCCCeEEecCcchHHHHH
Q 003446 428 EAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYG--DFVAEPIPFAVPGILIPKVSTSEIIL 505 (819)
Q Consensus 428 ~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~--~~~~~~~~~~~p~~~i~~~~~~~~l~ 505 (819)
.++...+++||||++.+ |.|.+.+|+.+|+.+||.|+|++|+.... +....+....+|.+.+ +.++++.|+
T Consensus 106 ~D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~I-s~~~a~~L~ 178 (421)
T 2ek8_A 106 ADVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGI-TKQEGDALA 178 (421)
T ss_dssp TTTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEE-CHHHHHHHH
T ss_pred hhcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEe-CHHHHHHHH
Confidence 34444579999999998 57789999999999999999999986321 1111123456888876 677888888
Q ss_pred HHHh
Q 003446 506 QYYE 509 (819)
Q Consensus 506 ~~~~ 509 (819)
+++.
T Consensus 179 ~~l~ 182 (421)
T 2ek8_A 179 ANLR 182 (421)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8874
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.5 Score=42.07 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=45.5
Q ss_pred EEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecC
Q 003446 734 LILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQA 788 (819)
Q Consensus 734 ~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~ 788 (819)
..++..|.|...++.+|++++...+++++. .+..|+|+||+..++.|.+.++..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECTTCEEEEEEEEEECGG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECCCCEEEEEEEEEEChH
Confidence 356779999999999999999887676554 356799999999999999999875
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.91 E-value=1 Score=41.37 Aligned_cols=85 Identities=13% Similarity=-0.019 Sum_probs=61.9
Q ss_pred ceEEEEEEEEEecCCceeEEEEEeCC----CCceEEEeCCeEEEeCCcEEEEEEEEEEecC------C-CCeEEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVVHP----NGTTVSLYPPWFTIAPQGTQDLAIQFNVTQA------I-GDFSFGEIVLT 800 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~~~----~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~------~-~~~~~G~i~~~ 800 (819)
...+-+++|+|.|.-+.+|++..... ..--++++|..-+++||++.+++|++.+... . ..-++--|++.
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 34455679999999999999985321 1113677899999999999999999987542 0 12234567776
Q ss_pred eCCccEEEEeEEEEee
Q 003446 801 GSLNHIVRIPLSVKPV 816 (819)
Q Consensus 801 ~~~~~~l~~P~~~~~~ 816 (819)
=.+|.+..||+.+.+.
T Consensus 123 Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 123 LDRGKDYFLTISGNYL 138 (140)
T ss_dssp ETTSCEEEEEEEEEEC
T ss_pred eecCCcEEEEEecccc
Confidence 6778899999887654
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.98 Score=39.44 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=54.0
Q ss_pred ceEEEEEEEEEecCCceeEEEEEeC-CCCceEEEeCCeEEEeCCcEEEEEEEEEEecCCCCeEEEEEEEEeCCc-cEEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVVH-PNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAIGDFSFGEIVLTGSLN-HIVRI 809 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~~-~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~-~~l~~ 809 (819)
...+.+.+++|.|+.+..|++.... ..+...+++|.+=+++||++++|+|++.+.. .+.| .=.|.+.-.+. ..+++
T Consensus 26 ~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~-~g~f-~~~i~v~~~g~~~~~~L 103 (112)
T 2e6j_A 26 SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSII-LGNF-EEEFLVNVNGSPEPVKL 103 (112)
T ss_dssp CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCC-CEEE-EEEECEEESSCSSCCCE
T ss_pred CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCC-cceE-EEEEEEEECCCCceEEE
Confidence 3455667999999999999884211 1123477889999999999999999999864 3333 45566654332 33444
Q ss_pred eEEE
Q 003446 810 PLSV 813 (819)
Q Consensus 810 P~~~ 813 (819)
-+-+
T Consensus 104 ~i~G 107 (112)
T 2e6j_A 104 TIRG 107 (112)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.75 E-value=0.28 Score=60.81 Aligned_cols=26 Identities=19% Similarity=0.552 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANY 176 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~ 176 (819)
.|.|+||+|||+|||||+.+|.|.-.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq~t 57 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLETL 57 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSSCC
T ss_pred CCCCCccEEEEEeCCCCCCCCcceec
Confidence 59999999999999999999999854
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=88.67 E-value=0.29 Score=57.51 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANS 476 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 476 (819)
..+++|||||+.+ |.+.+.+|+.+|+.+||.|+||||++
T Consensus 150 ~~~v~GkIvlv~~------G~~~~~~Kv~~A~~~GA~gviiy~dp 188 (707)
T 3fed_A 150 GINCTGKIVIARY------GKIFRGNKVKNAMLAGAIGIILYSDP 188 (707)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCCCCCeEEEEEC------CCCCHhHHHHHHHHCCCEEEEEEcCc
Confidence 3468999999998 56889999999999999999999964
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=88.21 E-value=1 Score=50.06 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=50.1
Q ss_pred CCCccCceEEEEEecCCcc-CC--ccchHHH----HHHHHhcCceEEEEEecCCCCC------cc-ccccCCCCCeEEec
Q 003446 431 EPSLVQGSVVICTFSDGFY-NQ--TSTLTAV----INTAITLGFMGFILIANSHYGD------FV-AEPIPFAVPGILIP 496 (819)
Q Consensus 431 ~~~~~~Gkiv~~~~~~~~~-~g--~~~~~~~----~~~~~~~Ga~g~i~~n~~~~~~------~~-~~~~~~~~p~~~i~ 496 (819)
...+++||||++.++.... .+ -+.+..| ..+|.++||+|+|++|+..... .. .......+|.+.|
T Consensus 123 ~~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~I- 201 (444)
T 3iib_A 123 EAGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAI- 201 (444)
T ss_dssp CTTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEE-
T ss_pred cccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEe-
Confidence 3468999999998742100 00 0113333 4579999999999999754211 11 1112356898888
Q ss_pred CcchHHHHHHHHhh
Q 003446 497 KVSTSEIILQYYEQ 510 (819)
Q Consensus 497 ~~~~~~~l~~~~~~ 510 (819)
+.++++.|+..+..
T Consensus 202 s~~da~~L~~~l~~ 215 (444)
T 3iib_A 202 SNPDADLINAMLKR 215 (444)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhC
Confidence 77889999888764
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=87.52 E-value=0.41 Score=55.54 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=35.4
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
.+++||||++.+ |.|.+..|+.+|+.+||.|+|+||++.
T Consensus 128 vdv~GkIvlv~~------g~~~~~~K~~~A~~~GA~gvii~~~~~ 166 (640)
T 3kas_A 128 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 166 (640)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHTTTCSEEEEECCTT
T ss_pred cccCCcEEEEec------CCCCHHHHHHHHHHCCCeEEEEEeccc
Confidence 479999999998 578899999999999999999999864
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=87.17 E-value=5 Score=43.14 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=60.5
Q ss_pred ceEEEEEEEEEecCCceeEEEEEeCCCCc----eEEEeCCeEEEeCCcEEEEEEEEEEecCC-------CCeEEEEEEEE
Q 003446 732 KSLILQRSLKNVGNKTETYLTSVVHPNGT----TVSLYPPWFTIAPQGTQDLAIQFNVTQAI-------GDFSFGEIVLT 800 (819)
Q Consensus 732 ~~~~~~~tv~N~g~~~~ty~~~~~~~~g~----~v~~~p~~~tv~~g~~~~~~v~~~~~~~~-------~~~~~G~i~~~ 800 (819)
...+-+.||+|+|.-+.+|.+........ =++++|..-+++||++.+++|++.+.... ..-.+--|++.
T Consensus 46 ~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ 125 (366)
T 3qis_A 46 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 125 (366)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEE
T ss_pred CeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEE
Confidence 44556679999999999999875432221 16778999999999999999999988731 12223456666
Q ss_pred eCCccEEEEeEEEEe
Q 003446 801 GSLNHIVRIPLSVKP 815 (819)
Q Consensus 801 ~~~~~~l~~P~~~~~ 815 (819)
=.+|...-+|+.+.+
T Consensus 126 ve~G~d~FI~v~~~~ 140 (366)
T 3qis_A 126 LDRGKDYFLTISGNY 140 (366)
T ss_dssp ETTSCEEEEEEEEEE
T ss_pred EeCCCcEEEEecccc
Confidence 667777777776554
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=85.53 E-value=1.5 Score=48.67 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=25.3
Q ss_pred CCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecC
Q 003446 541 APIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSP 582 (819)
Q Consensus 541 ~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~ 582 (819)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v-------------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV-------------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE-------------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce-------------EEEeccCCeeccccC
Confidence 46789999999865 999999999999863
|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
Probab=83.84 E-value=5.5 Score=35.74 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=37.9
Q ss_pred cceEEEEEEEEEecCCc-eeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEE
Q 003446 731 AKSLILQRSLKNVGNKT-ETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNV 785 (819)
Q Consensus 731 ~~~~~~~~tv~N~g~~~-~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~ 785 (819)
....+++.+|+|.|..+ ..|++.+.. .|-.+. ...+.|++|++++|+++..+
T Consensus 32 G~~~ti~vtV~N~G~~~a~~~~V~lyv-ng~~v~--t~~v~La~G~s~tv~f~~~~ 84 (127)
T 3idu_A 32 NKLAEYEVHVKNLGGIGVPSTKVRVYI-NGTLYK--NWTVSLGPKEEKVLTFNWTP 84 (127)
T ss_dssp TCCEEEEEEEEECSSSCEEEEEEEEEE-TTEEEE--EEEEEECTTCEEEEEEEECC
T ss_pred CCEEEEEEEEEECCCCccCCcEEEEEE-CCEEEe--eEEeccCCCCeEEEEEEEEc
Confidence 45678899999999765 667777655 343332 23568999999999999874
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=82.49 E-value=9.1 Score=37.78 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=55.4
Q ss_pred eEEEEEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCC-CCeEEEEEEEEeC---Cc--cE
Q 003446 733 SLILQRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAI-GDFSFGEIVLTGS---LN--HI 806 (819)
Q Consensus 733 ~~~~~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~-~~~~~G~i~~~~~---~~--~~ 806 (819)
..+.+.+++|.|+.+.+++..+. |.. +++.+..-+++||++.+++|+++..... -....+.|++... ++ ..
T Consensus 20 ~~~~~~~i~N~g~~pl~i~~~~~-p~~--~~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~~~ 96 (220)
T 2qsv_A 20 EGVVRLVVNNTDESDLQVAVVSL-PSF--VSLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKKAV 96 (220)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEC-CTT--EECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCEEE
T ss_pred cceEEEEEEeCCCCceEEEeccC-CCc--eEeeeCcceeCCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCcccc
Confidence 34556799999999988887543 544 4445677889999999999999877642 2445677887652 22 24
Q ss_pred EEEeEEEEe
Q 003446 807 VRIPLSVKP 815 (819)
Q Consensus 807 l~~P~~~~~ 815 (819)
.+||+.+..
T Consensus 97 ~~i~v~g~v 105 (220)
T 2qsv_A 97 DSVMVSLPL 105 (220)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 477766643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 819 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-30 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-12 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 4e-04 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 9e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 0.002 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 0.003 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-05 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-09 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 3e-04 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 6e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 9e-08 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 4e-08 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 0.002 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 7e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 7e-06 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 4e-06 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 1e-04 | |
| d1scjb_ | 71 | d.58.3.2 (B:) Subtilisin prosegment {Bacillus subt | 0.004 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 123 bits (308), Expect = 2e-30
Identities = 71/528 (13%), Positives = 143/528 (27%), Gaps = 128/528 (24%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
I +D+G + SH N V+ S
Sbjct: 21 AGNRTICIIDSGYDRSHNDL----------------------------NANNVTGTNNSG 52
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
++ P + HG+HVA T A A VV G+ P +
Sbjct: 53 TG----------NWYQPGNNNAHGTHVAGTIAAIANNEGVV---------GVMPNQNANI 93
Query: 274 Y--KAMYPTVGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARR 331
+ K + + A ++ +++ T +
Sbjct: 94 HIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTT-----ERNALNTHYN 148
Query: 332 AGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLGGVGLSGPTC 391
GV ++ AAGN G + + + ++ AA ++ + + +
Sbjct: 149 NGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQV------------ 196
Query: 392 GRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQ 451
++ S VV +
Sbjct: 197 -------------EISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPH---NRLTPS 240
Query: 452 TSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQ 511
++ A G + + + + +
Sbjct: 241 GTSYAPAPINASATGALAECTVNGTSF-------------------------SCGNMANK 275
Query: 512 THRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTD--LSRNPTDVLKPDV 569
ER V + ++ I + G I+ +S P + L +D+ P V
Sbjct: 276 ICLVER-VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSV 334
Query: 570 IAPGHQIWAAWSPVSALDPMLT--GCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMI 627
A + + + ++ +GTSMATPH++G+A L+ ++P + + +
Sbjct: 335 SVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQV 394
Query: 628 ASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675
+A+++TA G G G+++A A
Sbjct: 395 RAALNATADDLSVAG----------------RDNQTGYGMINAVAAKA 426
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 67.2 bits (162), Expect = 2e-12
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 19/103 (18%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625
++ APG +++ W + +SGTSMATPH++G+AA I NPS + T
Sbjct: 224 DIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNT 273
Query: 626 MIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLV 668
+ S + A D G A G + + G G
Sbjct: 274 QLRSNLQERAKSVDIKGGYGAAIGDD---------YASGFGFA 307
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 41.0 bits (94), Expect = 4e-04
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 152 NAGEGIVIGFVDTGINPSHPSFAN 175
G GI I +DTG+N SHP N
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVN 46
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 68.1 bits (165), Expect = 2e-12
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 24/120 (20%)
Query: 567 PDVIAPGHQIWAAW--------SPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQH 618
V APG I + + P G + GTSMA PH+ G+ A++ Q
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 619 NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDPGL 678
P+ P I + +TA ++ G D G GLV AL L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGNG----------------WDHDTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 45.8 bits (107), Expect = 2e-05
Identities = 51/323 (15%), Positives = 84/323 (26%), Gaps = 95/323 (29%)
Query: 83 IGSYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKLMTSYTP-------- 134
+ ++ +NG V + K L ++ VE + +L+
Sbjct: 56 VLELPQIKVVSIKLNGMTVKQAYDKIKALAL-KGIRYVEPSYKRELIKPTVVKPNPDMYK 114
Query: 135 ------------------------QFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSH 170
+ +G+ Q +W ++ +G I++ VDTG++ +H
Sbjct: 115 IRKPGLNSTARDYGEELSNELWGLEAIGVTQQLW-----EEASGTNIIVAVVDTGVDGTH 169
Query: 171 PSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230
P G G R A
Sbjct: 170 PDLE-------------GQVIAGYRP----------------------AFDEELPAGTDS 194
Query: 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPT-------VGT 283
G+HVA T A +V G+AP A+I
Sbjct: 195 SYGGSAGTHVAGTIAAKKDGKGIV---------GVAPGAKIMPIVIFDDPALVGGNGYVG 245
Query: 284 LADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQ 343
V A I AT G ++ S G + + V VV A N
Sbjct: 246 DDYVAAGIIWATDHGAKVMNHSWGGWGYSYT------MKEAFDYAMEHGVVMVVSAGNNT 299
Query: 344 GPAPSTVVSYSPWAVAAAACTTD 366
+ + P + AA
Sbjct: 300 SDSHHQYPAGYPGVIQVAALDYY 322
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 65.0 bits (157), Expect = 6e-12
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 29/109 (26%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625
+ +V+APG +++ + +A L+GTSMA+PH+AG AALI +P+ + +
Sbjct: 194 ELEVMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 626 MIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRAL 674
+ + +SSTAT + F +G GL++ A
Sbjct: 244 QVRNRLSSTATYLGS-------------------SFYYGKGLINVEAAA 273
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 64.2 bits (155), Expect = 9e-12
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 22/103 (21%)
Query: 572 PGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAI 631
G I A V + P G +A L+GTSMATPH+AG AAL+KQ NPSW+ I + +
Sbjct: 188 AGLDIVAPGVNVQSTYP---GSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHL 244
Query: 632 SSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRAL 674
+TAT + +GSGLV+A A
Sbjct: 245 KNTATSLGSTNL-------------------YGSGLVNAEAAT 268
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.4 bits (153), Expect = 2e-11
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 29/110 (26%)
Query: 566 KPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPT 625
+ DV+APG I + G + +GTSMA+PH+AG AALI +P+WT T
Sbjct: 195 ELDVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNT 244
Query: 626 MIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675
+ S++ +T TK + F +G GL++ A
Sbjct: 245 QVRSSLENTTTKLGD-------------------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 38.3 bits (88), Expect = 0.002
Identities = 42/204 (20%), Positives = 67/204 (32%), Gaps = 58/204 (28%)
Query: 154 GEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSA 213
G + + +D+GI+ SHP +
Sbjct: 23 GSNVKVAVIDSGIDSSHPDLK------------------------------------VAG 46
Query: 214 GAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAV 273
GA V + D HG+HVA T V G+AP A +
Sbjct: 47 GASMVPSETNPFQ-----DNNSHGTHVAGT---------VAALNNSIGVLGVAPSASLYA 92
Query: 274 YKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRA 332
K + G + +I I+ A + +D++ +S+G + A +
Sbjct: 93 VKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAA-------VDKAVAS 145
Query: 333 GVFVVQAAGNQGPAPSTVVSYSPW 356
GV VV AAGN+G + S+ P
Sbjct: 146 GVVVVAAAGNEGTSGSSSTVGYPG 169
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.0 bits (154), Expect = 2e-11
Identities = 27/206 (13%), Positives = 52/206 (25%), Gaps = 7/206 (3%)
Query: 470 FILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGI 529
L N ++ + G + + + R G + + G
Sbjct: 130 RSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGG 189
Query: 530 GEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM 589
E + +G + S P + +
Sbjct: 190 REHDSCNCDGYTNSIYTLSISSATQFG--NVPWYSEACSSTLATTYSSGNQNEKQIVTTD 247
Query: 590 LTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEG 649
L +GTS + P AGI AL + N + T + + T+ +
Sbjct: 248 LRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA-----DD 302
Query: 650 FEITSTYNSTHFDFGSGLVSATRALD 675
+ +G GL+ A +
Sbjct: 303 WATNGVGRKVSHSYGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.7 bits (153), Expect = 3e-11
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 574 HQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISS 633
+++ S + G GTS A P AG+ L+ + NP+ T +
Sbjct: 236 AVTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSIL 295
Query: 634 TATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675
+A + + ++ +G G + A + ++
Sbjct: 296 SAVGLEKNAD----GDWRDSAMGKKYSHRYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 17/158 (10%)
Query: 154 GEGIVIGFVDTGINPSHPSFAN-------------YNPFEPNISHFSGDCETGPRFPLSS 200
G G+V VD G++ + + N +P +S
Sbjct: 45 GAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKK 104
Query: 201 CNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYG 260
N ++A + L+ + ++ +G V + + G
Sbjct: 105 GNNFCGVGVGYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADD----GRH 160
Query: 261 LASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDG 298
L + V A + A G
Sbjct: 161 LQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRG 198
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 62.6 bits (150), Expect = 5e-11
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 23/129 (17%)
Query: 554 FTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTG--CNFALLSGTSMATPHIAGI 611
F+ +KPDV+APG I +A S ++ +A + GTSMATP +AG
Sbjct: 205 FSSRGPTKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGN 264
Query: 612 AALIKQH-----NPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSG 666
A +++H + P+++ +A+ + A + + G G
Sbjct: 265 VAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY----------------PNGNQGWG 308
Query: 667 LVSATRALD 675
V+ ++L+
Sbjct: 309 RVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 44.5 bits (103), Expect = 3e-05
Identities = 16/101 (15%), Positives = 27/101 (26%), Gaps = 38/101 (37%)
Query: 143 VWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCN 202
+ G G+G ++ DTG++ + + F I+ T
Sbjct: 13 AQSSYGLY---GQGQIVAVADTGLDTGRNDSSMHEAFRGKITALYALGRTNN-------- 61
Query: 203 GKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVAST 243
D GHG+HVA +
Sbjct: 62 ---------------------------ANDTNGHGTHVAGS 75
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 58.2 bits (139), Expect = 1e-09
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 577 WAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTAT 636
+ P + + G + +SGTSMATPH+AG+AA + + + I+ TA
Sbjct: 199 LDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTAN 257
Query: 637 KYDNYG 642
K D
Sbjct: 258 KGDLSN 263
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 150 DKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNG 203
D++AG+G + +DTGI SHP F ++S G + G
Sbjct: 26 DESAGQGSCVYVIDTGIEASHPEFEGRAQMVKTY-YYSSRDGNGHGTHCAGTVG 78
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 55.7 bits (133), Expect = 6e-09
Identities = 45/234 (19%), Positives = 68/234 (29%), Gaps = 61/234 (26%)
Query: 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE 191
Y PQ W G G I +DTG++ +HP + +
Sbjct: 13 YGPQNTYTDY-AWDVTKG----SSGQEIAVIDTGVDYTHPDLDG------KVIKGYDFVD 61
Query: 192 TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVP 251
D HG+HVA
Sbjct: 62 NDYDP----------------------------------MDLNNHGTHVAGI-------- 79
Query: 252 VVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDE 310
+ +GMAP RI +A+ GTL+D+ AI A G +++ L
Sbjct: 80 AAAETNNATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINL------ 133
Query: 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACT 364
+ + +A G VV AAGN G + + + +A A
Sbjct: 134 -SLGCDCHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVD 186
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 52.3 bits (124), Expect = 9e-08
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 580 WSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYD 639
+P + +TG +A +SGTSMA+PH+AG+AAL+ I AI TA K
Sbjct: 204 VAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKIS 261
Query: 640 NYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675
G F G +++ A+
Sbjct: 262 GTGT------------------YFKYGRINSYNAVT 279
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 53.6 bits (127), Expect = 4e-08
Identities = 44/220 (20%), Positives = 65/220 (29%), Gaps = 60/220 (27%)
Query: 130 TSYTPQFL----GLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISH 185
T+YTP + P+G+ G+G I + G S A Y
Sbjct: 4 TAYTPLDVAQAYQFPEGL---------DGQGQCIAIIALGGGYDETSLAQY--------- 45
Query: 186 FSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAA 245
A+L S + G +
Sbjct: 46 --------------------------------FASLGVSAPQVVSVSVDGATNQPTGDPN 73
Query: 246 GNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATMDGVDILTLS 305
G G +A +AP A+IAVY A G L + A+ T I+++S
Sbjct: 74 GPDGEV----ELDIEVAGALAPGAKIAVYFAPNTDAGFLNAITTAVHDPTH-KPSIVSIS 128
Query: 306 IGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGP 345
G + + L A GV V+ AAG+ G
Sbjct: 129 WGGP-EDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGS 167
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 38.9 bits (89), Expect = 0.002
Identities = 14/90 (15%), Positives = 21/90 (23%), Gaps = 8/90 (8%)
Query: 530 GEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM 589
G P+ S + + PDV +
Sbjct: 214 GGSTGGGVSRIFPLPSWQERANVPPSANPGAGSGRGVPDVAGNADPATGYEVVID----- 268
Query: 590 LTGCNFALLSGTSMATPHIAGIAALIKQHN 619
++ GTS P A + A I Q
Sbjct: 269 ---GETTVIGGTSAVAPLFAALVARINQKL 295
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 49.3 bits (116), Expect = 7e-07
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 23/100 (23%)
Query: 576 IWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTA 635
+ A S + + P +A LSGTSMATPH+AG+A L+ S + I +AI +TA
Sbjct: 202 VAAPGSSIYSTYPT---STYASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTA 256
Query: 636 TKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675
K G + G V+A +A+
Sbjct: 257 DKISGTG------------------TYWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 46.2 bits (108), Expect = 7e-06
Identities = 45/242 (18%), Positives = 65/242 (26%), Gaps = 61/242 (25%)
Query: 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCE 191
Y PQ + PQ W D G G I VDTG+ +HP A + +
Sbjct: 13 YGPQKIQAPQ-AW-----DIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQ 66
Query: 192 TGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVP 251
G +A+ N+
Sbjct: 67 NGNGHGTHCA-------------------------------------GIAAAVTNNSTGI 89
Query: 252 VVVDGFFYGLASGMAPCARIAVYKAMYPT-VGTLADVIAAIDQATMDGVDILTLSIGPDE 310
G AP A I + + + GT V I A G +++LS+G
Sbjct: 90 A-----------GTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV 138
Query: 311 PPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYP 370
G+ + + V V A AP+ YS A+ D
Sbjct: 139 G------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSS 192
Query: 371 GS 372
S
Sbjct: 193 FS 194
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 47.3 bits (111), Expect = 4e-06
Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 14/212 (6%)
Query: 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVP 491
++ S+ C + TA G + + + P
Sbjct: 126 AKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGST 185
Query: 492 GILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRAPIVSRFSSRG 551
+ S+ +I + + G+ G S + S+
Sbjct: 186 YSVSWPASSPNVIAVGGTTLYTTSAGAYSNETVWNEGLDSNGKLWATG--GGYSVYESKP 243
Query: 552 PDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGI 611
+ +S P L PD+ Q A + GTS+A+P G+
Sbjct: 244 SWQSVVSGTPGRRLLPDISFDAAQGTGALIY--------NYGQLQQIGGTSLASPIFVGL 295
Query: 612 AALIKQHNPS----WTPTMIASAISSTATKYD 639
A ++ N + + ++ S+ + +D
Sbjct: 296 WARLQSANSNSLGFPAASFYSAISSTPSLVHD 327
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 42.7 bits (99), Expect = 1e-04
Identities = 24/206 (11%), Positives = 50/206 (24%), Gaps = 47/206 (22%)
Query: 153 AGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFS 212
+G + G ++ F+ L+S N + +
Sbjct: 23 TAANTTVGIITIGGVSQTLQ---------DLQQFTS------ANGLASVNTQTIQ----- 62
Query: 213 AGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIA 272
+ + + +V A A
Sbjct: 63 ----------------TGSSNGDYSDDQQGQGEWDLDSQSIVG---------SAGGAVQQ 97
Query: 273 VYKAMYP-TVGTLADVIAAIDQATMD-GVDILTLSIGPDEPPRDTITMLGIFDVLMLFAR 330
+ M + + A +QA D ++ +S+G E + L D + A
Sbjct: 98 LLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAA 157
Query: 331 RAGVFVVQAAGNQGPAPSTVVSYSPW 356
G ++G++G Y
Sbjct: 158 AQGQTFSVSSGDEGVYECNNRGYPDG 183
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Score = 34.5 bits (79), Expect = 0.004
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 96 VNGFAVHLTPTQAKKLENAPQVKLVERDRRA 126
VN A L K+L+ P V VE D A
Sbjct: 38 VNAAAATLDEKAVKELKKDPSVAYVEEDHIA 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 819 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.55 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.42 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.72 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 94.02 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 93.28 | |
| d1rowa_ | 107 | SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: | 83.21 | |
| d1m1sa_ | 109 | WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 | 80.99 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=8.9e-53 Score=496.22 Aligned_cols=334 Identities=24% Similarity=0.296 Sum_probs=248.7
Q ss_pred cEEEEeeeeeeEEEEEcCHHHH----HH--HhcCCCceEEEeCcccccccc----CCC----------------------
Q 003446 87 NKLYSFKYTVNGFAVHLTPTQA----KK--LENAPQVKLVERDRRAKLMTS----YTP---------------------- 134 (819)
Q Consensus 87 ~~~~~~~~~~ng~~~~~~~~~~----~~--L~~~p~V~~v~~~~~~~~~~~----~~~---------------------- 134 (819)
+++.++. .++.+.++++...+ +. +..+|+|++|||+...++... ..+
T Consensus 54 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (671)
T d1r6va_ 54 KVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELS 132 (671)
T ss_dssp EEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTG
T ss_pred EEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcccc
Confidence 3344443 56667777665333 22 235899999999876554210 000
Q ss_pred -Cc-----cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEE
Q 003446 135 -QF-----LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSA 208 (819)
Q Consensus 135 -~~-----~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~ 208 (819)
.+ +++++..|+. ++|+||+|||||||||++||||.++ ++.+
T Consensus 133 ~~~w~l~~i~~~~a~~~~-----~tG~gV~VaViDtGvd~~Hpdl~~~----------------------------~~~~ 179 (671)
T d1r6va_ 133 NELWGLEAIGVTQQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQ----------------------------VIAG 179 (671)
T ss_dssp GGCHHHHHTTCCHHHHHH-----CSCTTCEEEEEESCCBTTSGGGTTT----------------------------BCCE
T ss_pred ccCcChhhcCccHHHHhc-----CCCCCCEEEEEcCCcCCCChhhcCC----------------------------cccC
Confidence 01 2223323554 7899999999999999999999976 2333
Q ss_pred EEcccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecC------CC-
Q 003446 209 RFFSAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYP------TV- 281 (819)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~------~g- 281 (819)
+++..+. ......++.|.+||||||||||+|+.+. ..+.||||+|+|+++|++++ .+
T Consensus 180 ~~~~~~~-------~~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~g~ 243 (671)
T d1r6va_ 180 YRPAFDE-------ELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGNGY 243 (671)
T ss_dssp EEGGGTE-------EECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTTSB
T ss_pred ccccccC-------CCCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCCCc
Confidence 3333210 0011234567889999999999997531 23589999999999999975 23
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCC-CCcccCCcceEEE
Q 003446 282 GTLADVIAAIDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAP-STVVSYSPWAVAA 360 (819)
Q Consensus 282 ~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitV 360 (819)
...+.++++|+||+++|++|||||||+.. ....++.+++.|.++|+++|+||||++.+. ...|+..|++|+|
T Consensus 244 ~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~V 316 (671)
T d1r6va_ 244 VGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQV 316 (671)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEE
T ss_pred ccHHHHHHHHHHHHhCCCcEEeccccccc-------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEE
Confidence 56678999999999999999999999753 235788899999999999999999998754 4567788999999
Q ss_pred ccccccceeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEE
Q 003446 361 AACTTDRIYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVV 440 (819)
Q Consensus 361 gAs~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv 440 (819)
||++....
T Consensus 317 ga~~~~~~------------------------------------------------------------------------ 324 (671)
T d1r6va_ 317 AALDYYGG------------------------------------------------------------------------ 324 (671)
T ss_dssp EEEEEETT------------------------------------------------------------------------
T ss_pred EEecCCCC------------------------------------------------------------------------
Confidence 98532100
Q ss_pred EEEecCCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcce
Q 003446 441 ICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVA 520 (819)
Q Consensus 441 ~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~ 520 (819)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeceeeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCC--------CcCC
Q 003446 521 IKFNAQAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDP--------MLTG 592 (819)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~--------~~~~ 592 (819)
...+++||||||.+ ||+|||++|+|+++....... ...+
T Consensus 325 --------------------~~~~a~fS~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~ 371 (671)
T d1r6va_ 325 --------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNG 371 (671)
T ss_dssp --------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSS
T ss_pred --------------------cceeeeccCCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCC
Confidence 01478999999976 999999999999875432111 2235
Q ss_pred CcceecccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccc
Q 003446 593 CNFALLSGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATR 672 (819)
Q Consensus 593 ~~y~~~sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~ 672 (819)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++...+. +..||||+||+.+
T Consensus 372 ~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~----------------~~~~G~G~vna~~ 435 (671)
T d1r6va_ 372 GTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW----------------DHDTGYGLVKLDA 435 (671)
T ss_dssp CCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC----------------BTTTBTCBCCHHH
T ss_pred CeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC----------------CCCcccChhCHHH
Confidence 689999999999999999999999999999999999999999988754432 4679999999999
Q ss_pred cCCCCe
Q 003446 673 ALDPGL 678 (819)
Q Consensus 673 Al~~~l 678 (819)
|++..+
T Consensus 436 Av~~~~ 441 (671)
T d1r6va_ 436 ALQGPL 441 (671)
T ss_dssp HHHCCC
T ss_pred HhhCcC
Confidence 997543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=6.9e-49 Score=443.20 Aligned_cols=374 Identities=20% Similarity=0.229 Sum_probs=232.3
Q ss_pred CCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCCC
Q 003446 152 NAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSPF 231 (819)
Q Consensus 152 ~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 231 (819)
.+|+||+|||||||||++||+|+++ ++.++++... .+...+.
T Consensus 19 ~~G~gv~VaviDtGid~~Hp~~~~~----------------------------~~~~~~~~~~----------~~~~~~~ 60 (435)
T d1v6ca_ 19 SQAGNRTICIIDSGYDRSHNDLNAN----------------------------NVTGTNNSGT----------GNWYQPG 60 (435)
T ss_dssp TTGGGCEEEEEESCCCTTSTTTTTS----------------------------EEEECCCTTS----------CCTTCCC
T ss_pred cCCCCcEEEEEcCCCCCCChhhccC----------------------------eeeeeccCCC----------CCCCCCC
Confidence 4899999999999999999999875 3333333221 1234577
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccC--CCeEEEEEeecCCC-CCHHHHHHHHHHHHh-CCCcEEEeCCC
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAP--CARIAVYKAMYPTV-GTLADVIAAIDQATM-DGVDILTLSIG 307 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP--~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~SlG 307 (819)
|++||||||||||||+... ..+.|||| +++|+.+|++.... +...++++||+++++ .|++|||+|||
T Consensus 61 d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g 131 (435)
T d1v6ca_ 61 NNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (435)
T ss_dssp SSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccC
Confidence 8999999999999997532 23589999 89999999998755 667789999999996 69999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEEeCCCeEEe--eec
Q 003446 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLLLGNGLKLG--GVG 385 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~~--~~~ 385 (819)
.... ...+..+++.+.++|+++|+||||+|....+.++.++++|+|||++.+.....+...+....+. |..
T Consensus 132 ~~~~-------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~ 204 (435)
T d1v6ca_ 132 GSGS-------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEA 204 (435)
T ss_dssp BSCC-------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSS
T ss_pred CCCC-------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccc
Confidence 7543 2567788889999999999999999998888899999999999987765432221111111111 100
Q ss_pred CCCCCCCCCCceee-EEEecccccccCCCCCCCcccccccCC-------------------CCCCCCCccCceEEEEEec
Q 003446 386 LSGPTCGRPLFLSK-LVLARDVILRVNGTFPRTPQYIEECQY-------------------PEAFEPSLVQGSVVICTFS 445 (819)
Q Consensus 386 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~C~~-------------------~~~~~~~~~~Gkiv~~~~~ 445 (819)
+....... ...+. ......... .....+........|.. ...+....+.+++.++.+.
T Consensus 205 i~st~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (435)
T d1v6ca_ 205 ILSTVTVG-EGRLADITIGGQSYF-SNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV 282 (435)
T ss_dssp EEEECSTT-CEEEEEEEETTEECG-GGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred eeeeeecC-CCcccccccCCceee-ccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence 00000000 00000 000000000 00000000000000000 0011122344555555443
Q ss_pred CCccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeece
Q 003446 446 DGFYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNA 525 (819)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 525 (819)
.... ...........+...++.+++.+
T Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 309 (435)
T d1v6ca_ 283 GNQG-SSYPEINSTKACKTAGAKGIIVY---------------------------------------------------- 309 (435)
T ss_dssp SCSS-SSCTHHHHHHHHHHTTCSEEEEE----------------------------------------------------
T ss_pred CCcc-ccceeeeeceeecccCCcceEEe----------------------------------------------------
Confidence 1111 11112222233333333333333
Q ss_pred eeeeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCC-------CCCcCCCcceec
Q 003446 526 QAGIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSAL-------DPMLTGCNFALL 598 (819)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~-------~~~~~~~~y~~~ 598 (819)
+++.+|.... ......||||.+||..|.++....... .....++.|..|
T Consensus 310 ---------------------~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~ 365 (435)
T d1v6ca_ 310 ---------------------SNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYY 365 (435)
T ss_dssp ---------------------CCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEE
T ss_pred ---------------------ccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEE
Confidence 2333333211 011467999999999887543110000 001124579999
Q ss_pred ccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccC
Q 003446 599 SGTSMATPHIAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRAL 674 (819)
Q Consensus 599 sGTSMAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al 674 (819)
||||||||||||++|||||+||+|+|+|||++||+||+++.. ++++++||+|+||+.+|+
T Consensus 366 sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~----------------~~~~~~~G~G~vn~~~A~ 425 (435)
T d1v6ca_ 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV----------------AGRDNQTGYGMINAVAAK 425 (435)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS----------------SSCBTTTBTCBCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC----------------CCCCCCcccceecHHHHH
Confidence 999999999999999999999999999999999999987743 234678999999999996
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.7e-48 Score=413.15 Aligned_cols=266 Identities=32% Similarity=0.441 Sum_probs=214.4
Q ss_pred CCCCccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEc
Q 003446 132 YTPQFLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFF 211 (819)
Q Consensus 132 ~~~~~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~ 211 (819)
+..+.++++. +|++ +++|+||+|||||||||++||+|.++ ++..++|
T Consensus 13 w~l~~i~~~~-aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~----------------------------~~~~~~~ 59 (280)
T d1dbia_ 13 YGPQNTYTDY-AWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK----------------------------VIKGYDF 59 (280)
T ss_dssp CTTGGGTHHH-HTTT----CCCCTTCEEEEEESCCCTTSTTTTTT----------------------------EEEEEET
T ss_pred cChhhCCHHH-HHhc----cCCCCCeEEEEEccCcCCCChhhcCC----------------------------eeecccc
Confidence 3344556555 8887 79999999999999999999999964 5666666
Q ss_pred ccchhhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHH
Q 003446 212 SAGAQAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAA 290 (819)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~a 290 (819)
... ...+.|.++|||||||+|+|.... ...+.||||+|+|+.+|+++..+ +..+++++|
T Consensus 60 ~~~------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a 119 (280)
T d1dbia_ 60 VDN------------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADA 119 (280)
T ss_dssp TTT------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHH
T ss_pred cCC------------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHH
Confidence 542 245678899999999999987532 13468999999999999998876 788999999
Q ss_pred HHHHHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceee
Q 003446 291 IDQATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYP 370 (819)
Q Consensus 291 i~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~ 370 (819)
|+|++++|++|||||||.... ......++..+.++|+++|+||||+|......|+..+++|+|||.+.
T Consensus 120 i~~a~~~g~~iin~S~g~~~~-------~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~----- 187 (280)
T d1dbia_ 120 IIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ----- 187 (280)
T ss_dssp HHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-----
T ss_pred HHHHHHcCCcEeecccccccc-------chhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-----
Confidence 999999999999999997543 24567788899999999999999999877777888889999987321
Q ss_pred eeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC
Q 003446 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450 (819)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~ 450 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeec
Q 003446 451 QTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIG 530 (819)
Q Consensus 451 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHH
Q 003446 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610 (819)
Q Consensus 531 ~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 610 (819)
.+.++.||++||.. |++|||.+|++... +..|..++|||||||||||
T Consensus 188 ----------~~~~a~~S~~g~~~-------------d~~apg~~i~~~~~----------~~~~~~~sGTS~AaP~vaG 234 (280)
T d1dbia_ 188 ----------YDRLASFSNYGTWV-------------DVVAPGVDIVSTIT----------GNRYAYMSGTSMASPHVAG 234 (280)
T ss_dssp ----------TSCBCTTBCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHH
T ss_pred ----------CCCcCCcCCCCCcc-------------cccCCccceecccc----------CcceeccCCccccchHHHH
Confidence 13578899999876 89999999999884 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 611 IAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 611 ~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++|||+|. .+++.+||++|++||+++... ...||+|+||+++||+
T Consensus 235 ~~All~~~--~~t~~~v~~~L~~tA~~~~~~------------------~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 235 LAALLASQ--GRNNIEIRQAIEQTADKISGT------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHT--TCCHHHHHHHHHHTSBCCTTB------------------TTTBSSEECCHHHHHT
T ss_pred HHHHHhCC--CcCHHHHHHHHHHhCcCCCCC------------------CCcCCCCeEcHHHHcC
Confidence 99999995 458999999999999876422 3469999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.4e-47 Score=406.51 Aligned_cols=261 Identities=33% Similarity=0.465 Sum_probs=220.2
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
.+++++ +|+. + +|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 17 ~i~a~~-aw~~----~-tG~Gv~VaViDsGi~~~H~~~~~~----------------------------~~~~~~~~~~- 61 (279)
T d1thma_ 17 KIQAPQ-AWDI----A-EGSGAKIAIVDTGVQSNHPDLAGK----------------------------VVGGWDFVDN- 61 (279)
T ss_dssp HTTHHH-HHTT----C-CCTTCEEEEEESCCCTTCTTTTTT----------------------------EEEEEETTTT-
T ss_pred hCCHHH-HHhc----c-CCCCcEEEEEcCCCCCCChhhcCC----------------------------eecccccccc-
Confidence 355554 8876 3 899999999999999999999864 6666777643
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQA 294 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 294 (819)
+..+.|..+|||||||+|++....+ ..+.||||+|+|+.+|++...+ +...+++++|+++
T Consensus 62 -----------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~ 122 (279)
T d1thma_ 62 -----------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYA 122 (279)
T ss_dssp -----------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHH
T ss_pred -----------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHH
Confidence 2456788999999999999875422 3468999999999999998876 7888999999999
Q ss_pred HhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEE
Q 003446 295 TMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLL 374 (819)
Q Consensus 295 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~ 374 (819)
++.+++|+|+|||.... ......++..+.++|+++|+|+||+|......+...+++|+|||++.+
T Consensus 123 ~~~~~~i~n~S~G~~~~-------~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~-------- 187 (279)
T d1thma_ 123 ADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN-------- 187 (279)
T ss_dssp HHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT--------
T ss_pred hhcCCceeccccCcccc-------chhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC--------
Confidence 99999999999997542 356778888999999999999999999887788888999999874211
Q ss_pred eCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccc
Q 003446 375 LGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTST 454 (819)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~ 454 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeecccee
Q 003446 455 LTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRV 534 (819)
Q Consensus 455 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (819)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHH
Q 003446 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAAL 614 (819)
Q Consensus 535 ~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 614 (819)
+.++.||++|++. ||.|||.+|+++.+ ++.|..++|||||||||||++||
T Consensus 188 -------~~~~~~S~~G~~~-------------di~Apg~~i~~~~~----------~~~~~~~sGTS~AaP~vaG~~AL 237 (279)
T d1thma_ 188 -------DNKSSFSTYGSWV-------------DVAAPGSSIYSTYP----------TSTYASLSGTSMATPHVAGVAGL 237 (279)
T ss_dssp -------SCBCTTCCCCTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCCccccCCCceE-------------EEeeeeeccccccC----------cccccccCCcchhhHHHHHHHHH
Confidence 3478899999876 89999999999984 45899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 615 IKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 615 l~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|+|.+| ++.+||++|++||+++... +..||+|+||+.+||+
T Consensus 238 l~~~~~--s~~~i~~~L~~tA~~~~g~------------------~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 238 LASQGR--SASNIRAAIENTADKISGT------------------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHTTTC--CHHHHHHHHHHTCBCCTTB------------------TTTBSSEECCHHHHHH
T ss_pred HhcCCc--CHHHHHHHHHhhCccCCCC------------------CCcceeeeEcHHHhhC
Confidence 999766 7899999999999876421 3469999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=3.4e-47 Score=402.44 Aligned_cols=260 Identities=32% Similarity=0.489 Sum_probs=213.5
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
+++++. +|.+ +++|+||+|||||||||++||+|+ +...++|...
T Consensus 10 ~i~~~~-~~~~----g~tG~gv~VaViDtGv~~~Hp~l~------------------------------~~~~~~~~~~- 53 (274)
T d1r0re_ 10 LIKADK-VQAQ----GFKGANVKVAVLDTGIQASHPDLN------------------------------VVGGASFVAG- 53 (274)
T ss_dssp HTTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCC------------------------------EEEEEECSTT-
T ss_pred hcChHH-HHHc----CCCCCCeEEEEECCCCCCCChhhc------------------------------ccCCccccCC-
Confidence 345544 7887 899999999999999999999996 3344555432
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQA 294 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 294 (819)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+|+++..+ +..++++++++++
T Consensus 54 -----------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a 113 (274)
T d1r0re_ 54 -----------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWA 113 (274)
T ss_dssp -----------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred -----------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 134567889999999999987532 2357999999999999999877 7789999999999
Q ss_pred HhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC----CcccCCcceEEEccccccceee
Q 003446 295 TMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS----TVVSYSPWAVAAAACTTDRIYP 370 (819)
Q Consensus 295 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgAs~~~~~~~ 370 (819)
.+++++|||+|||.... .........++.++++++|+||||+|.... ..|+..+++|+|||++.+
T Consensus 114 ~~~~~~i~n~S~~~~~~-------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~---- 182 (274)
T d1r0re_ 114 TTNGMDVINMSLGGASG-------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN---- 182 (274)
T ss_dssp HHTTCSEEEECEEBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT----
T ss_pred HhcCCceeccccccccc-------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC----
Confidence 99999999999997543 245667778899999999999999986532 335566788888764211
Q ss_pred eeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC
Q 003446 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450 (819)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~ 450 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeec
Q 003446 451 QTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIG 530 (819)
Q Consensus 451 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHH
Q 003446 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610 (819)
Q Consensus 531 ~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 610 (819)
+.++.||++||.+ ||+|||++|+++.+ .+.|..++|||||||+|||
T Consensus 183 -----------~~~~~~s~~g~~~-------------di~APG~~i~~~~~----------~~~~~~~sGTS~AaP~VaG 228 (274)
T d1r0re_ 183 -----------SNRASFSSVGAEL-------------EVMAPGAGVYSTYP----------TNTYATLNGTSMASPHVAG 228 (274)
T ss_dssp -----------SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHH
T ss_pred -----------CCcccccCCCCCE-------------EEEecCCCcccccC----------CCCeEeecCCchhHHHHHH
Confidence 3467899999754 99999999999984 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 611 IAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 611 ~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
++|||+|++|+|++++||++|++||+++.. .+.||+|+||+.+|++
T Consensus 229 ~~All~~~~p~lt~~~i~~~L~~tA~~~~~-------------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 229 AAALILSKHPNLSASQVRNRLSSTATYLGS-------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHTCBCCSC-------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhCccCCC-------------------CCceEcCeecHHHhcC
Confidence 999999999999999999999999987532 3469999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=5.7e-47 Score=402.20 Aligned_cols=262 Identities=31% Similarity=0.468 Sum_probs=213.8
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
.+++++ +|.+ +++|+||+|||||||||++||+|+.. ..+++...
T Consensus 10 ~i~a~~-aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~------------------------------~~~~~~~~- 53 (281)
T d1to2e_ 10 QIKAPA-LHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA------------------------------GGASMVPS- 53 (281)
T ss_dssp HTTHHH-HHHH----TCSCTTCEEEEEESCCCTTCTTCCEE------------------------------EEEECCTT-
T ss_pred HhCcHH-HHHC----CCCCCCeEEEEECCCCCCCChhhhhc------------------------------CCccccCC-
Confidence 455555 8987 89999999999999999999999743 23333321
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQA 294 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 294 (819)
+.....+.++|||||||||+|.... ....||||+|+|+.+|++...+ +..++++++|+|+
T Consensus 54 ----------~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a 114 (281)
T d1to2e_ 54 ----------ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWA 114 (281)
T ss_dssp ----------CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHH
T ss_pred ----------CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHH
Confidence 1122234579999999999987431 2357999999999999998877 7888999999999
Q ss_pred HhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC----CcccCCcceEEEccccccceee
Q 003446 295 TMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS----TVVSYSPWAVAAAACTTDRIYP 370 (819)
Q Consensus 295 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgAs~~~~~~~ 370 (819)
++.+++|||+|||... ....++.+++.+.++|+++|+||||+|.... ..|+..+++|+|||++.
T Consensus 115 ~~~~~~v~n~S~g~~~-------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~----- 182 (281)
T d1to2e_ 115 IANNMDVINMSLGGPS-------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS----- 182 (281)
T ss_dssp HHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT-----
T ss_pred HhccccccccccCCCc-------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC-----
Confidence 9999999999999753 2367888899999999999999999987532 34556778888876421
Q ss_pred eeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccC
Q 003446 371 GSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYN 450 (819)
Q Consensus 371 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~ 450 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeec
Q 003446 451 QTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIG 530 (819)
Q Consensus 451 g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (819)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHH
Q 003446 531 EGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAG 610 (819)
Q Consensus 531 ~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG 610 (819)
.+.++.||++||.. |+.|||.+|+++.+ ++.|..++|||||||+|||
T Consensus 183 ----------~~~~~~~S~~G~~~-------------d~~apG~~i~s~~~----------~~~~~~~~GTS~Aap~vaG 229 (281)
T d1to2e_ 183 ----------SNQRASFSSVGPEL-------------DVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAG 229 (281)
T ss_dssp ----------TSCBCTTCCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECBHHHHHHHHHH
T ss_pred ----------CCCCCcccCCCCCc-------------cccCCCCCceeecC----------CCeeEcccCcchhHHHHHH
Confidence 13467899999876 89999999999984 4589999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCCC
Q 003446 611 IAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALDP 676 (819)
Q Consensus 611 ~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~~ 676 (819)
++|||+|++|+|++++||++|++||+++.. ...||+|+||+.+|++.
T Consensus 230 ~~All~~~~p~lt~~~i~~~L~~tA~~~~~-------------------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 230 AAALILSKHPNWTNTQVRSSLENTTTKLGD-------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHTTCBCCSC-------------------HHHHTTCBCCHHHHTSS
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhCccCCC-------------------CCCcccCcccHHHHHhh
Confidence 999999999999999999999999987632 23689999999999984
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=7.8e-47 Score=398.48 Aligned_cols=259 Identities=33% Similarity=0.501 Sum_probs=217.0
Q ss_pred ccCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccch
Q 003446 136 FLGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGA 215 (819)
Q Consensus 136 ~~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~ 215 (819)
.++++. +|.. +++|+||+|+||||||+ +||+|... ..++|...
T Consensus 10 ~i~~~~-aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~------------------------------~~~~~~~~- 52 (269)
T d1gcia_ 10 RVQAPA-AHNR----GLTGSGVKVAVLDTGIS-THPDLNIR------------------------------GGASFVPG- 52 (269)
T ss_dssp HTTHHH-HHHT----TCSCTTCEEEEEESCCC-CCTTCCEE------------------------------EEEECSTT-
T ss_pred HhCcHH-HHhC----CCCCCCeEEEEECCCCC-CCcccCcc------------------------------ccccccCC-
Confidence 355555 8887 79999999999999998 89999642 23444432
Q ss_pred hhccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHH
Q 003446 216 QAVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQA 294 (819)
Q Consensus 216 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a 294 (819)
...+.|.++|||||||||++.... ....|+||+|+|+.+|++...+ +....+.++++|+
T Consensus 53 -----------~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~ 112 (269)
T d1gcia_ 53 -----------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWA 112 (269)
T ss_dssp -----------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHH
T ss_pred -----------CCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHH
Confidence 145567899999999999987532 2357999999999999998876 7788899999999
Q ss_pred HhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcccCCcceEEEccccccceeeeeEE
Q 003446 295 TMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVVSYSPWAVAAAACTTDRIYPGSLL 374 (819)
Q Consensus 295 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgAs~~~~~~~~~~~ 374 (819)
..+++++||+|||.... ......+++.+.++|+++|+||||+|......|+..|++|+|||++.+
T Consensus 113 ~~~~~~~in~s~g~~~~-------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------- 177 (269)
T d1gcia_ 113 GNNGMHVANLSLGSPSP-------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN-------- 177 (269)
T ss_dssp HHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT--------
T ss_pred Hhccccccccccccccc-------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC--------
Confidence 99999999999997543 245667788999999999999999998877888889999999974211
Q ss_pred eCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccc
Q 003446 375 LGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTST 454 (819)
Q Consensus 375 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~ 454 (819)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeecccee
Q 003446 455 LTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRV 534 (819)
Q Consensus 455 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (819)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHH
Q 003446 535 ASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAAL 614 (819)
Q Consensus 535 ~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 614 (819)
+.++.||++||.. ||+|||.++.++.+ ++.|..++|||||||+|||++||
T Consensus 178 -------~~~~~~S~~G~~~-------------di~Apg~~~~~~~~----------~~~~~~~sGTS~AaP~vaG~aAl 227 (269)
T d1gcia_ 178 -------NNRASFSQYGAGL-------------DIVAPGVNVQSTYP----------GSTYASLNGTSMATPHVAGAAAL 227 (269)
T ss_dssp -------SCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHH
T ss_pred -------CCcccccCCCCCc-------------eEEEeeecceeccC----------CCceEecCCcchHHHHHHHHHHH
Confidence 2467899999876 89999999999884 45899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 615 IKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 615 l~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|+|++|+|++++||++|++||+++.. +..||+|+||+++|++
T Consensus 228 l~~~~p~lt~~~i~~~L~~tA~~~g~-------------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 228 VKQKNPSWSNVQIRNHLKNTATSLGS-------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHCTTCCHHHHHHHHHHTSBCCSC-------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHHhhCccCCC-------------------CCCcccCeEcHHHhcC
Confidence 99999999999999999999987632 2358999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.8e-42 Score=371.02 Aligned_cols=289 Identities=29% Similarity=0.390 Sum_probs=216.2
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
+++++ +|.. +++|+||+|+|||||||++||+|.++ +...++|....
T Consensus 13 i~~~~-aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~----------------------------~~~~~~~~~~~- 58 (309)
T d2ixta1 13 IYNND-TLTS----TTGGSGINIAVLDTGVNTSHPDLVNN----------------------------VEQCKDFTGAT- 58 (309)
T ss_dssp HHTCT-TCCC----CCCCTTCEEEEEESCCCTTCTTTTTT----------------------------EEEEEESSSSS-
T ss_pred cCChh-hhcc----CCCCCCeEEEEEccCCCCCChhHhcc----------------------------ccccccccCCC-
Confidence 34444 7876 79999999999999999999999975 55566665431
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQAT 295 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~ 295 (819)
........|.++|||||||||+|.... +...+.||||+|+|+.+|++...+ +..++++.++++++
T Consensus 59 -------~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (309)
T d2ixta1 59 -------TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAA 124 (309)
T ss_dssp -------SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHH
T ss_pred -------CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCcccccccccccccc
Confidence 111234567889999999999987432 123468999999999999998876 78888999999988
Q ss_pred hCC-----CcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC--cccCCcceEEEccccccce
Q 003446 296 MDG-----VDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST--VVSYSPWAVAAAACTTDRI 368 (819)
Q Consensus 296 ~~g-----~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgAs~~~~~ 368 (819)
+.+ ..|+|+||+.... ......++..+.++|+++|+||||++..... .|+..+++++|++......
T Consensus 125 ~~~~~~~~~~v~~~s~~~~~~-------~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~ 197 (309)
T d2ixta1 125 DQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ 197 (309)
T ss_dssp HHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE
T ss_pred ccccccccccccccccccccc-------ccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccc
Confidence 753 4689999987532 2566778889999999999999999876543 3445677777775432110
Q ss_pred eeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCc
Q 003446 369 YPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGF 448 (819)
Q Consensus 369 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~ 448 (819)
... + .
T Consensus 198 ~~~--------------------------~--------------------------------------------~----- 202 (309)
T d2ixta1 198 NGT--------------------------Y--------------------------------------------R----- 202 (309)
T ss_dssp TTE--------------------------E--------------------------------------------E-----
T ss_pred ccc--------------------------c--------------------------------------------c-----
Confidence 000 0 0
Q ss_pred cCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeee
Q 003446 449 YNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAG 528 (819)
Q Consensus 449 ~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 528 (819)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHH
Q 003446 529 IGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHI 608 (819)
Q Consensus 529 ~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~V 608 (819)
.........++++|+... ...||||+|||.+|+++.+ +..|..++|||||||+|
T Consensus 203 ---------~~~~~~~~~~~~~~~~~~-------~~~~vdi~apG~~~~s~~~----------~~~~~~~sGTS~AaP~V 256 (309)
T d2ixta1 203 ---------VADYSSRGYISTAGDYVI-------QEGDIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHV 256 (309)
T ss_dssp ---------ECTTSCCCCTTTTTSSSC-------CTTCCCEEEECSSEEEECT----------TSSEEEECSHHHHHHHH
T ss_pred ---------cccccccccccccccccc-------CCCcceeecCCCceeeecC----------CCcceeecCccchhHHH
Confidence 000012345677777654 4689999999999999974 45899999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccc
Q 003446 609 AGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSA 670 (819)
Q Consensus 609 AG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~ 670 (819)
||++|||+|++|+|++.|||++|++||++++..+.. ......++.+|+|++|+
T Consensus 257 aG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~---------g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 257 SGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY---------GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST---------TCCSSSBTTTBTCBCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc---------CCccCCCcccCCCEecC
Confidence 999999999999999999999999999988655431 12344567889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.9e-41 Score=358.91 Aligned_cols=236 Identities=29% Similarity=0.407 Sum_probs=191.0
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
..+|+||+|||||||||++||+|.++ +.....+. ..+
T Consensus 27 ~~tG~Gv~VaViDsGid~~Hpdf~g~----------------------------~~~~~~~~---------------~~~ 63 (279)
T d2pwaa1 27 ESAGQGSCVYVIDTGIEASHPEFEGR----------------------------AQMVKTYY---------------YSS 63 (279)
T ss_dssp TTTTTTEEEEEEESCCCTTCGGGTTC----------------------------EEEEEESS---------------SCS
T ss_pred CCCCCCeEEEEECcCCCCCChhhcCC----------------------------ceeccCCC---------------CCc
Confidence 36999999999999999999999975 21112211 234
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHhCC-------CcEE
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATMDG-------VDIL 302 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~~g-------~dVI 302 (819)
.|.++|||||||||+|+. .|+||+|+|+.+|++.... ...+++..+++++.... +.|+
T Consensus 64 ~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 129 (279)
T d2pwaa1 64 RDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA 129 (279)
T ss_dssp SCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred ccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccce
Confidence 577899999999999863 5999999999999998765 67888899999988753 3499
Q ss_pred EeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC-cccCCcceEEEccccccceeeeeEEeCCCeEE
Q 003446 303 TLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST-VVSYSPWAVAAAACTTDRIYPGSLLLGNGLKL 381 (819)
Q Consensus 303 n~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgAs~~~~~~~~~~~~~~g~~~ 381 (819)
|+|||.. ..+.+..++.++.++|+++|+||||++.+... .|...|++|+|||++.
T Consensus 130 n~s~g~~--------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------------- 185 (279)
T d2pwaa1 130 SLSLGGG--------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------- 185 (279)
T ss_dssp EECCCEE--------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred eccCCCc--------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----------------
Confidence 9999964 23578888899999999999999999876433 4566788888886421
Q ss_pred eeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCCccchHHHHHH
Q 003446 382 GGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQTSTLTAVINT 461 (819)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~ 461 (819)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeeccceeeeccCCC
Q 003446 462 AITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGEGRVASFEGRA 541 (819)
Q Consensus 462 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (819)
.
T Consensus 186 -------------------------------------------------------------------------------~ 186 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------Y 186 (279)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhHHHHHHHHHHHhCCC
Q 003446 542 PIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPHIAGIAALIKQHNPS 621 (819)
Q Consensus 542 ~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 621 (819)
+.++.||++||.. ||+|||.+|+++++ ++.|..++|||||||+|||++|||+|++|.
T Consensus 187 g~~~~~S~~G~~~-------------dv~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~ 243 (279)
T d2pwaa1 187 DRRSSFSNYGSVL-------------DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTLGKT 243 (279)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCccccCCCCcc-------------cccccccccccccc----------CCcccCCCcchhHHHHHHHHHHHHHHhCCC
Confidence 3578899999876 89999999999984 558999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccc
Q 003446 622 WTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSA 670 (819)
Q Consensus 622 ~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~ 670 (819)
++++++|. |++||++.. ....|+|++|+
T Consensus 244 ~~~~~~~~-ll~ta~~~~--------------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 244 TAASACRY-IADTANKGD--------------------LSNIPFGTVNL 271 (279)
T ss_dssp CTTTHHHH-HHHHSEESC--------------------CBSCCTTSCCE
T ss_pred ChHHHHHH-HHHhCcCCC--------------------CCCCCCCChhh
Confidence 99877775 677886532 23479999886
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=1e-39 Score=352.31 Aligned_cols=298 Identities=27% Similarity=0.337 Sum_probs=218.3
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|... |++|+||+|||||||||++||+|.... ..++++...+++...
T Consensus 8 ~~~~~-~~~~~---G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------------~~~~~~~~~~~~~~~-- 59 (318)
T d1wmda2 8 VKADV-AQSSY---GLYGQGQIVAVADTGLDTGRNDSSMHE----------------------AFRGKITALYALGRT-- 59 (318)
T ss_dssp TTHHH-HHHHH---CCSCTTCEEEEEESCCTTSCSSTTSCT----------------------TTTTCEEEEEETTTT--
T ss_pred cCchh-HHHcc---CccccCeEEEEEcCCcCCCCcccccCc----------------------ccCCcEEeecCCCCC--
Confidence 45443 55532 799999999999999999999998651 012355555555432
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC---CCHHHHHHHHHH
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV---GTLADVIAAIDQ 293 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g---~~~~~i~~ai~~ 293 (819)
.++.|..||||||||||+|+.. ...||||+|+|+.+|+++..+ .....+..++++
T Consensus 60 -----------~~~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~ 117 (318)
T d1wmda2 60 -----------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQ 117 (318)
T ss_dssp -----------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHH
T ss_pred -----------CCCCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHH
Confidence 4566789999999999999743 237999999999999998765 334457889999
Q ss_pred HHhCCCcEEEeCCCCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCCcc--cCCcceEEEccccccceeee
Q 003446 294 ATMDGVDILTLSIGPDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPSTVV--SYSPWAVAAAACTTDRIYPG 371 (819)
Q Consensus 294 a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVgAs~~~~~~~~ 371 (819)
+...+++|+|+|||...... .....+.+.+.+.++++++|+|+||.|.+..... ...+.++++.+........
T Consensus 118 ~~~~~~~i~~~S~g~~~~~~----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 192 (318)
T d1wmda2 118 AYSAGARIHTNSWGAAVNGA----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF- 192 (318)
T ss_dssp HHHTTCSEEEECCCBCCTTC----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-
T ss_pred HHhcCCceeecccccccccc----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-
Confidence 99999999999999764321 3345666777888999999999999998765433 2345555555432110000
Q ss_pred eEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCCccCC
Q 003446 372 SLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDGFYNQ 451 (819)
Q Consensus 372 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~~~~g 451 (819)
+
T Consensus 193 ----------------------------------------------------~--------------------------- 193 (318)
T d1wmda2 193 ----------------------------------------------------G--------------------------- 193 (318)
T ss_dssp ----------------------------------------------------C---------------------------
T ss_pred ----------------------------------------------------c---------------------------
Confidence 0
Q ss_pred ccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceeeeecc
Q 003446 452 TSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQAGIGE 531 (819)
Q Consensus 452 ~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (819)
T Consensus 194 -------------------------------------------------------------------------------- 193 (318)
T d1wmda2 194 -------------------------------------------------------------------------------- 193 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCC--cCCCcceecccccchhhHHH
Q 003446 532 GRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPM--LTGCNFALLSGTSMATPHIA 609 (819)
Q Consensus 532 ~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~--~~~~~y~~~sGTSMAaP~VA 609 (819)
........+..||++||... ...|||+.|||.+|+++.......... .....|..++||||||||||
T Consensus 194 ----~~~~~~~~~~~~s~~G~~~~-------~~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Va 262 (318)
T d1wmda2 194 ----SYADNINHVAQFSSRGPTKD-------GRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVA 262 (318)
T ss_dssp ----GGGSCTTSBCTTSCCCCCTT-------SCCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHH
T ss_pred ----cccccccccccccccCCCcC-------CCcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHH
Confidence 00011134678899999876 478999999999999988654432111 11246888999999999999
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 610 GIAALIKQHN-----PSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 610 G~aALl~q~~-----P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|++|||+|++ +.|+|.+||++|++||+++... .++..||+|+||+.+||+
T Consensus 263 G~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~----------------~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 263 GNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG----------------YPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp HHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSC----------------SSCTTTTTCBCCHHHHHT
T ss_pred HHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCC----------------CCCCCeeeceecHHHHhC
Confidence 9999999974 4588999999999999876432 335679999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-38 Score=342.02 Aligned_cols=163 Identities=22% Similarity=0.264 Sum_probs=109.7
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
++++. +|.. +++|+||+|||||||||++||+|.++... .+ . +++.+.
T Consensus 24 in~~~-aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~~-----~~--------~-------------~~~~~~-- 70 (334)
T d1p8ja2 24 LNVKE-AWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYDP-----GA--------S-------------FDVNDQ-- 70 (334)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBCG-----GG--------C-------------EETTTT--
T ss_pred CCHHH-HHhc----CCCCCCeEEEEEccCCCCCChhHhhcccc-----CC--------C-------------ccccCC--
Confidence 44444 7887 89999999999999999999999986100 00 0 001000
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM 296 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 296 (819)
.....+.....|.++|||||||||++....+ ....|+||+++++.+|++... ..+.+.++.++++
T Consensus 71 ----~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 135 (334)
T d1p8ja2 71 ----DPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDGE---VTDAVEARSLGLN 135 (334)
T ss_dssp ----BSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSSC---CCHHHHHHHHTSC
T ss_pred ----CCccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhcccc---ccchHHHHHHHhh
Confidence 0011112334578899999999999875432 124799999999999987643 3456677777775
Q ss_pred -CCCcEEEeCCCCCCCCCCcc-----ccccHHHHHHHHHHhCCcEEEEeCCCCCCCC
Q 003446 297 -DGVDILTLSIGPDEPPRDTI-----TMLGIFDVLMLFARRAGVFVVQAAGNQGPAP 347 (819)
Q Consensus 297 -~g~dVIn~SlG~~~~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 347 (819)
.+++++|+|||......... .....+..++..+.++|+++|+||||++...
T Consensus 136 ~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~ 192 (334)
T d1p8ja2 136 PNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREH 192 (334)
T ss_dssp TTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGT
T ss_pred hcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccC
Confidence 68999999999754321110 1122344455667789999999999987654
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.5e-38 Score=340.32 Aligned_cols=292 Identities=18% Similarity=0.171 Sum_probs=201.1
Q ss_pred cCCCcccccccCCCCCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchh
Q 003446 137 LGLPQGVWTQRGGDKNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQ 216 (819)
Q Consensus 137 ~g~~~~~w~~~~~~~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~ 216 (819)
+++++ +|.. +++|+||+|||||||||++||+|+++. +. .+.++|.+.
T Consensus 33 in~~~-aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~--------~~------------------~~~~~~~~~-- 79 (339)
T d2id4a2 33 INVLD-LWYN----NITGAGVVAAIVDDGLDYENEDLKDNF--------CA------------------EGSWDFNDN-- 79 (339)
T ss_dssp CCCHH-HHHT----TCSCTTCEEEEEESCCCTTSTTTTTTB--------CG------------------GGCEETTTT--
T ss_pred cCHHH-HHhc----CCCCCCcEEEEECcCcCCCChHHhcCc--------cc------------------ccccccccC--
Confidence 44444 7876 899999999999999999999999861 10 012233321
Q ss_pred hccccCCCCCCCCCCCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHHh
Q 003446 217 AVATLNTSVDFLSPFDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQATM 296 (819)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~~ 296 (819)
........++++|||||||+|+|....+ ....||||+|+|+.+|++.. ....+++..++.++++
T Consensus 80 -------~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~ 143 (339)
T d2id4a2 80 -------TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLD 143 (339)
T ss_dssp -------BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTT
T ss_pred -------CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec-cccchHHHHHHHHHHh
Confidence 0111334567899999999999875322 23579999999999998753 3566778888888777
Q ss_pred CCCcEEEeCCCCCCCCCCccccc-----cHHHHHHHHHHhCCcEEEEeCCCCCCCCCCc--cc--CCcceEEEccccccc
Q 003446 297 DGVDILTLSIGPDEPPRDTITML-----GIFDVLMLFARRAGVFVVQAAGNQGPAPSTV--VS--YSPWAVAAAACTTDR 367 (819)
Q Consensus 297 ~g~dVIn~SlG~~~~~~~~~~~~-----~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~--~~p~vitVgAs~~~~ 367 (819)
. .+|+|+|||............ .....++..+..+|+++|+||||++...... +. ..+.+++|+++
T Consensus 144 ~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~---- 218 (339)
T d2id4a2 144 V-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI---- 218 (339)
T ss_dssp T-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE----
T ss_pred h-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc----
Confidence 6 499999999753221111111 1234455667789999999999987543221 11 11112222211
Q ss_pred eeeeeEEeCCCeEEeeecCCCCCCCCCCceeeEEEecccccccCCCCCCCcccccccCCCCCCCCCccCceEEEEEecCC
Q 003446 368 IYPGSLLLGNGLKLGGVGLSGPTCGRPLFLSKLVLARDVILRVNGTFPRTPQYIEECQYPEAFEPSLVQGSVVICTFSDG 447 (819)
Q Consensus 368 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~Gkiv~~~~~~~ 447 (819)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccchHHHHHHHHhcCceEEEEEecCCCCCccccccCCCCCeEEecCcchHHHHHHHHhhccccCCCcceeeeceee
Q 003446 448 FYNQTSTLTAVINTAITLGFMGFILIANSHYGDFVAEPIPFAVPGILIPKVSTSEIILQYYEQQTHRDERGVAIKFNAQA 527 (819)
Q Consensus 448 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~~p~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 527 (819)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccceeeeccCCCCeeecccccCCCCCCCCCCCCCCCCCccccCCCeEEEeecCCCCCCCCcCCCcceecccccchhhH
Q 003446 528 GIGEGRVASFEGRAPIVSRFSSRGPDFTDLSRNPTDVLKPDVIAPGHQIWAAWSPVSALDPMLTGCNFALLSGTSMATPH 607 (819)
Q Consensus 528 ~~~~~~~~~~~~~~~~~a~FSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~ 607 (819)
...+..+.||++|+.. ...++..+||..|.++.. .+..|..++||||||||
T Consensus 219 -----------~~~g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~ 269 (339)
T d2id4a2 219 -----------DHKDLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPL 269 (339)
T ss_dssp -----------CTTSCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHH
T ss_pred -----------cccccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHH
Confidence 1123456677777765 355688899999998764 34578999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcccccccCCCccccccccccccCCCCCcccccccccccccCC
Q 003446 608 IAGIAALIKQHNPSWTPTMIASAISSTATKYDNYGQLIMAEGFEITSTYNSTHFDFGSGLVSATRALD 675 (819)
Q Consensus 608 VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~GaG~vn~~~Al~ 675 (819)
|||++|||+|++|+|++.|||.+|++||.+++........ ...........||+|+||+.+||+
T Consensus 270 vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~----~~~~~~~~~~~~G~G~ln~~~Av~ 333 (339)
T d2id4a2 270 AAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWR----DSAMGKKYSHRYGFGKIDAHKLIE 333 (339)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCE----ECSSSSEEBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccc----ccCCCCCcCCCccchhhCHHHHHH
Confidence 9999999999999999999999999999987644321110 011223345569999999999986
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.8e-30 Score=283.61 Aligned_cols=164 Identities=26% Similarity=0.328 Sum_probs=110.3
Q ss_pred CCCCCCeEEEEecceeccCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCceEEEEEcccchhhccccCCCCCCCCC
Q 003446 151 KNAGEGIVIGFVDTGINPSHPSFANYNPFEPNISHFSGDCETGPRFPLSSCNGKIVSARFFSAGAQAVATLNTSVDFLSP 230 (819)
Q Consensus 151 ~~~G~gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ki~g~~~~~~~~~~~~~~~~~~~~~~~ 230 (819)
+++|+||+|||||||||++||||.+. |+.. + .......+
T Consensus 20 G~tG~Gv~VaViDtGvd~~H~dl~~~---------~~~~---~-----------------------------~~~~~~~~ 58 (357)
T d1t1ga_ 20 GLDGQGQCIAIIALGGGYDETSLAQY---------FASL---G-----------------------------VSAPQVVS 58 (357)
T ss_dssp TCCCTTCEEEEEESSCCCCHHHHHHH---------HHHT---T-----------------------------CCCCCEEE
T ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHH---------Hhhc---C-----------------------------CCCCCCce
Confidence 79999999999999999999999864 1000 0 00001123
Q ss_pred CCCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCCCCHHHHHHHHHHHH---hCCCcEEEeCCC
Q 003446 231 FDAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTVGTLADVIAAIDQAT---MDGVDILTLSIG 307 (819)
Q Consensus 231 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~ai~~a~---~~g~dVIn~SlG 307 (819)
.|.++|+|||+|++++...... .....+.||||+|+|+.+|+.... ..++.++++++ +++++|||+|||
T Consensus 59 ~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~----~~~~~~i~~~~~~~~~~~~Vin~S~G 130 (357)
T d1t1ga_ 59 VSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD----AGFLNAITTAVHDPTHKPSIVSISWG 130 (357)
T ss_dssp EESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH----HHHHHHHHHHHHCTTTCCSEEEECCC
T ss_pred eCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC----CchHHHHHHHHHhhhcCCeEEecccc
Confidence 3567899999998876532110 011235799999999999987643 33444555544 569999999999
Q ss_pred CCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCCC--------cccCCcceEEEcccc
Q 003446 308 PDEPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPST--------VVSYSPWAVAAAACT 364 (819)
Q Consensus 308 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------~~~~~p~vitVgAs~ 364 (819)
....... ......++.+++.+..+|+++|+|+||+|..... .+...+++++|++..
T Consensus 131 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 131 GPEDSWA-PASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp EEGGGSC-HHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred cCcCccc-cchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 7532211 2234567778888899999999999999854322 233457788887653
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1.5e-28 Score=269.98 Aligned_cols=125 Identities=16% Similarity=0.088 Sum_probs=96.7
Q ss_pred CCCCCccccccccccCCCcccccccccccccccccCCCeEEEEEeecCCC-CCHHHHHHHHHHHHh-CCCcEEEeCCCCC
Q 003446 232 DAVGHGSHVASTAAGNAGVPVVVDGFFYGLASGMAPCARIAVYKAMYPTV-GTLADVIAAIDQATM-DGVDILTLSIGPD 309 (819)
Q Consensus 232 d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~SlG~~ 309 (819)
+..+||||+++++++..+. ..+.||||+|+|+.+|++.+.+ ....+++.+|+||++ ++++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4578999999998765321 2357999999999999998876 677899999999996 5799999999974
Q ss_pred CCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCCCC-------------CcccCCcceEEEccccc
Q 003446 310 EPPRDTITMLGIFDVLMLFARRAGVFVVQAAGNQGPAPS-------------TVVSYSPWAVAAAACTT 365 (819)
Q Consensus 310 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-------------~~~~~~p~vitVgAs~~ 365 (819)
..........+.+++++++|.++||+||+||||+|.... ..++..+++++|+++..
T Consensus 137 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 137 EADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 322111234567788999999999999999999986432 22456789999997643
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.55 E-value=9.9e-08 Score=75.82 Aligned_cols=43 Identities=33% Similarity=0.324 Sum_probs=38.9
Q ss_pred cccEEEEeeeeeeEEEEEcCHHHHHHHhcCCCceEEEeCccccc
Q 003446 85 SYNKLYSFKYTVNGFAVHLTPTQAKKLENAPQVKLVERDRRAKL 128 (819)
Q Consensus 85 ~~~~~~~~~~~~ng~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~ 128 (819)
+.++.+.|+ .||||+++++++++++|+++|+|.+||+|+.++.
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 456788886 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.42 E-value=3.9e-07 Score=72.55 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.9
Q ss_pred cEEEEee-eeeeEEEEEcCHHHHHHHhcCCC--ceEEEeCc
Q 003446 87 NKLYSFK-YTVNGFAVHLTPTQAKKLENAPQ--VKLVERDR 124 (819)
Q Consensus 87 ~~~~~~~-~~~ng~~~~~~~~~~~~L~~~p~--V~~v~~~~ 124 (819)
.+.+.|. ..|+||+++++++.+++|+++|. |++||+|.
T Consensus 31 ~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 31 TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred ceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 3445555 58999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.72 E-value=0.0052 Score=51.57 Aligned_cols=91 Identities=11% Similarity=0.085 Sum_probs=61.3
Q ss_pred CCCcEEEecccceEEEEEEEEEecCCcee-EEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEecCC--CCeEEEEE
Q 003446 721 NLPSVTVSAVAKSLILQRSLKNVGNKTET-YLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQAI--GDFSFGEI 797 (819)
Q Consensus 721 n~ps~~~~~~~~~~~~~~tv~N~g~~~~t-y~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~~~--~~~~~G~i 797 (819)
..|++.+. -....+++.+|+|.|+...+ -++....|.|=++ .+..+.|+||+++++++++++|... +.|. =.+
T Consensus 7 t~p~~~v~-pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~-i~~ 82 (103)
T d1w8oa1 7 TIPDVALE-PGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPLMPGRQAKGQVTITVPAGTTPGRYR-VGA 82 (103)
T ss_dssp ECCCEEEC-TTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCBCTTCEEEEEEEEECCTTCCCEEEE-EEE
T ss_pred cCcceeeC-CCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--cCcceeeCCCCcEEEEEEEECCCCCCCceEE-EEE
Confidence 34666663 25677889999999987654 4677788988655 4566778999999999999999864 3343 334
Q ss_pred EEEeCCccEEEEeEEEEee
Q 003446 798 VLTGSLNHIVRIPLSVKPV 816 (819)
Q Consensus 798 ~~~~~~~~~l~~P~~~~~~ 816 (819)
..+.+ +...+..|.+.+.
T Consensus 83 ~a~~~-~~~~s~t~tvtV~ 100 (103)
T d1w8oa1 83 TLRTS-AGNASTTFTVTVG 100 (103)
T ss_dssp EEEET-TEEEEEEEEEEES
T ss_pred EEEeC-CcceEEEEEEEEE
Confidence 44443 3344445544443
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.02 Score=53.23 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=35.2
Q ss_pred CccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 433 SLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 433 ~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
.+++|||+|+.+ |.+.+.+|+.+|+..||.|+|+|.++.
T Consensus 59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 468999999998 577889999999999999999998764
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.03 Score=53.59 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=35.2
Q ss_pred CCccCceEEEEEecCCccCCccchHHHHHHHHhcCceEEEEEecCC
Q 003446 432 PSLVQGSVVICTFSDGFYNQTSTLTAVINTAITLGFMGFILIANSH 477 (819)
Q Consensus 432 ~~~~~Gkiv~~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 477 (819)
..+++|||+|+.+ |.+.+.+|+.+|+..||+|+|+|+++.
T Consensus 76 gi~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP~ 115 (233)
T d3bi1a2 76 KINCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDPA 115 (233)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCHH
T ss_pred CCcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecChH
Confidence 3478999999998 567789999999999999999999753
|
| >d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: SSP-19 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.21 E-value=2.8 Score=34.32 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=40.4
Q ss_pred EEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEE
Q 003446 737 QRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNV 785 (819)
Q Consensus 737 ~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~ 785 (819)
+.+|+|.++....|++....|. ...+.|..=.+.||++.++.|+...
T Consensus 18 ~~~l~N~s~~~vafKvKtt~~~--~y~V~P~~G~i~P~~~~~I~I~~~~ 64 (107)
T d1rowa_ 18 THKLVNGGAEKIVFKIKSSNNN--EYRIAPVFGFVDPSGSKDVVITRTA 64 (107)
T ss_dssp EEEEEECSSSCEEEEEEESCSS--SEEEECSEEEECTTEEEEEEEEECS
T ss_pred EEEEEcCCCCeEEEEEEcCCCC--eEEEECCEEEECCCCEEEEEEEeCC
Confidence 4599999999999999998876 4667799999999999999998754
|
| >d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: PapD-like family: MSP-like domain: WR4 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.99 E-value=3.2 Score=34.05 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=41.6
Q ss_pred EEEEEEecCCceeEEEEEeCCCCceEEEeCCeEEEeCCcEEEEEEEEEEec
Q 003446 737 QRSLKNVGNKTETYLTSVVHPNGTTVSLYPPWFTIAPQGTQDLAIQFNVTQ 787 (819)
Q Consensus 737 ~~tv~N~g~~~~ty~~~~~~~~g~~v~~~p~~~tv~~g~~~~~~v~~~~~~ 787 (819)
+.+++|.++....|++..+.|.- ..+.|..=.+.||++.++.|+.....
T Consensus 21 ~~~l~N~s~~~vafKiktt~~~~--y~V~P~~G~I~P~~~~~i~I~~~~~~ 69 (109)
T d1m1sa_ 21 THNITSESDSRLAFKVKSSNNEH--YRVRPVYGFVDAKGKSKLDINRLPGP 69 (109)
T ss_dssp EEEEEECSSSEEEEEEEESCTTT--EEEECSEEEECTTCEEEEEEEECSCC
T ss_pred EEEEECCCCCcEEEEEEcCCCCe--EEEeCCeeEECCCCeEEEEEEeCCCC
Confidence 45999999999999999988764 56779999999999999999986543
|