Citrus Sinensis ID: 003469
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.813 | 0.878 | 0.350 | 7e-95 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.783 | 0.875 | 0.348 | 2e-86 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.804 | 0.847 | 0.325 | 1e-81 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.834 | 0.910 | 0.309 | 3e-77 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.433 | 0.439 | 0.272 | 1e-17 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.106 | 0.196 | 0.418 | 8e-09 | |
| P20724 | 378 | Alkaline elastase YaB OS= | N/A | no | 0.080 | 0.174 | 0.421 | 2e-08 | |
| P00782 | 382 | Subtilisin BPN' OS=Bacill | no | no | 0.093 | 0.198 | 0.363 | 5e-08 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.301 | 0.129 | 0.237 | 7e-08 | |
| Q99405 | 380 | M-protease OS=Bacillus cl | no | no | 0.089 | 0.192 | 0.418 | 8e-08 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 348 bits (894), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 264/754 (35%), Positives = 395/754 (52%), Gaps = 89/754 (11%)
Query: 84 DTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHTPEFLGL---P 140
D+ + LY+Y++ I+GF+ +T ++A+ L PGV SV + + TT TP FLGL
Sbjct: 61 DSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHT 120
Query: 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPK-YRGKCEVDPDTKR 199
++P G + D+V+G +D+G++P S+ + +GP+P ++G CE +
Sbjct: 121 ADLFPEAGSY----SDVVVGVLDTGVWPESKSYSD---EGFGPIPSSWKGGCEAGTNFTA 173
Query: 200 SFCNGKIIGAQHFAEAAIAARA-FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGH 258
S CN K+IGA+ FA + + + + SP D DGHG+HT++ AAG+ + G+
Sbjct: 174 SLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGY 233
Query: 259 EFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTK 318
G A GMAPRAR+AVYK + L G F +D++AAID+A+ D V++LS+S+G
Sbjct: 234 ASGTARGMAPRARVAVYKVCW-LGGCFSSDILAAIDKAIADNVNVLSMSLG-----GGMS 287
Query: 319 TTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNL 378
+ + + AA++ G+ V+ +AGN GP +L + +PWITTV A DR + L
Sbjct: 288 DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAIL 347
Query: 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLL-----DSSVMKYSASDCQRPEVLNKNLVE 433
GNGK G+ L F A D LL ++ + + C ++ + V+
Sbjct: 348 GNGKNFTGVSL---------FKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEK-VK 397
Query: 434 GNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILIT 493
G I++C N A ++K + K+ G G +LA + G + +P +
Sbjct: 398 GKIVMCDRGIN-----ARVQK-GDVVKAAGGVGMILA-NTAANGEELVADAHLLPATTVG 450
Query: 494 DVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKD 553
+ K+ D++ +Y T+ S GT+ + K +P VA FS+RGPN
Sbjct: 451 E--KAGDIIRHYVTTDPNP----TASISILGTV------VGVKPSPVVAAFSSRGPN--- 495
Query: 554 FSFQDADLLKPDILAPGSLIWAAWS----PNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
++LKPD++APG I AAW+ P G + E F +ISGTSM+ PH++G+A
Sbjct: 496 --SITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVE-FNIISGTSMSCPHVSGLA 552
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVT---ATPFDYGSG 666
AL+K HP WSPAAI+SALMTT K + +PL + + T +TPFD+G+G
Sbjct: 553 ALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPL----------LDIATGKPSTPFDHGAG 602
Query: 667 HVNPRAALDPGLIFDAGYEDYLGFLC----TTPGIDIHEIRNYTNQPC-NYSMGHPYNFN 721
HV+P A +PGLI+D EDYLGFLC T+P I RNYT P +YS+ + N
Sbjct: 603 HVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVA---DLN 659
Query: 722 TPSITV-AHLVKTQVVTRTVTNVAEEETYSMSARMQ-PAIAIEVNPPAMTLKPGASRK-F 778
PS V V TRTVT+V TYS+ + + I V P + K +K +
Sbjct: 660 YPSFAVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSY 719
Query: 779 TVTLTVRSV--TGTYSFGEICMKGSRGHKVNIPV 810
TVT TV S +G+ SFG I + H V PV
Sbjct: 720 TVTFTVDSSKPSGSNSFGSIEWSDGK-HVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (822), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 254/728 (34%), Positives = 360/728 (49%), Gaps = 88/728 (12%)
Query: 68 HLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVR 127
H + ++G F ++ L++YK NGFAV +T ++AE + GV SV +
Sbjct: 51 HHRAMLEQVVGSTFAPESV--LHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNE 108
Query: 128 RLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKY 187
TT + +FLG P V P + +IV+G +D+GI+P PSF P P PK+
Sbjct: 109 LHTTRSWDFLGFPLTV-PRRSQVE---SNIVVGVLDTGIWPESPSFDDEGFSP--PPPKW 162
Query: 188 RGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG 247
+G CE + + CN KIIGA+ + R +P D P D +GHG+HTA+ AAG
Sbjct: 163 KGTCETSNNFR---CNRKIIGARSYH----IGRPISPG-DVNGPRDTNGHGTHTASTAAG 214
Query: 248 NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLS 307
++G G A G P ARIA YK + G D++AA D A+ DGVDI+SLS
Sbjct: 215 GLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLS 273
Query: 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367
VG +P + F++ + AV+ G+ + +AGNGGP T S SPW+ +VAA+
Sbjct: 274 VGGANP----RHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAAST 329
Query: 368 DDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVL 427
DR++ + +GNG+ G+ ++ T N+ + LV+ D+ ++ K ++ C V
Sbjct: 330 MDRKFVTQVQIGNGQSFQGVSIN--TFDNQYYPLVSGRDIP-NTGFDKSTSRFCTDKSV- 385
Query: 428 NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGI 487
N NL++G I++C SF E KSL A VL N P+P
Sbjct: 386 NPNLLKGKIVVCEASFG----------PHEFFKSLDGAAGVLMTSNTRDYADSYPLP--- 432
Query: 488 PGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSAR 547
+ V DL+ +T R + S + G IL+ SAP V FS+R
Sbjct: 433 -----SSVLDPNDLL-----ATLR----YIYSIRSPGATIFKSTTILNASAPVVVSFSSR 478
Query: 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAW---SPNGTDEANFVGEGFALISGTSMAAPH 604
GPN D++KPDI PG I AAW +P G N + F +ISGTSM+ PH
Sbjct: 479 GPN-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTL---FNIISGTSMSCPH 530
Query: 605 IAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYG 664
I GIA VK +P WSPAAIKSALMTT + P+ A+ + E F YG
Sbjct: 531 ITGIATYVKTYNPTWSPAAIKSALMTTAS-------PMNARFNPQAE---------FAYG 574
Query: 665 SGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTN--QPCNY-SMGHPYNFN 721
SGHVNP A+ PGL++DA DY+ FLC G + +R T C + G ++ N
Sbjct: 575 SGHVNPLKAVRPGLVYDANESDYVKFLCGQ-GYNTQAVRRITGDYSACTSGNTGRVWDLN 633
Query: 722 TPSITVA---HLVKTQVVTRTVTNVA-EEETYSMSARMQPAIAIEVNPPAMTLKPGASRK 777
PS ++ Q RT+T+VA + TY + I VNP ++ RK
Sbjct: 634 YPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRK 693
Query: 778 FTVTLTVR 785
+ TLTVR
Sbjct: 694 -SFTLTVR 700
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Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 242/744 (32%), Positives = 363/744 (48%), Gaps = 87/744 (11%)
Query: 56 DTTSELVTSYARHLEKKHDMLLGLLFERD--TYKKLYSYKHLINGFAVHITPDQAEILQR 113
+T + + HL + +LG+ E + + + LYSY I GFA +T +AEIL+
Sbjct: 37 ETAKTFASKFDWHLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRY 96
Query: 114 APGVKSVERDWKVRRLTTHTPEFLGLP----TGVWPTGGGFDRAGEDIVIGFVDSGIYPH 169
+P V +V D ++ TT++ +FLGL +GVW R G+ +IG +D+G++P
Sbjct: 97 SPEVVAVRPDHVLQVQTTYSYKFLGLDGFGNSGVWSK----SRFGQGTIIGVLDTGVWPE 152
Query: 170 HPSFGSHHTDPYG--PVP-KYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA----RAF 222
PSF D G +P K++G C+ S CN K+IGA+ F A +
Sbjct: 153 SPSF-----DDTGMPSIPRKWKGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESP 207
Query: 223 NPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF 282
N ++ S D GHG+HTA+ G++ + G+ G A GMAP A IAVYK +
Sbjct: 208 NMPREYISARDSTGHGTHTASTVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCW-FN 266
Query: 283 GGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQA 342
G + +D++AAID A+ D VD+LSLS+G P T + F A++ G+ V A
Sbjct: 267 GCYSSDILAAIDVAIQDKVDVLSLSLGGFPIPLYDDTIAIGTFR-----AMERGISVICA 321
Query: 343 AGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLV 402
AGN GP ++ + +PW++T+ A DRR+ + L NGK+L G L P
Sbjct: 322 AGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLANGKLLYGESLYPGK--------- 372
Query: 403 AANDVLLDSSVMKYSASD-----CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457
+ + V+ + D C R L + + G +++C N + E
Sbjct: 373 GIKNAGREVEVIYVTGGDKGSEFCLRGS-LPREEIRGKMVICDRGVN------GRSEKGE 425
Query: 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRV 517
K G +LA N + D + V + + T+S+ L Y N +
Sbjct: 426 AVKEAGGVAMILA--NTEINQEEDSIDVHLLPATLIGYTESVLLKAYVNATV-------- 475
Query: 518 KSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAW 577
K I G I AP+VA FSARGP S + +LKPD++APG I AAW
Sbjct: 476 ---KPKARIIFGGTVIGRSRAPEVAQFSARGP-----SLANPSILKPDMIAPGVNIIAAW 527
Query: 578 SPN-GTDEANFVGE--GFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTK 634
N G + F ++SGTSM+ PH++GI AL++ +P WSPAAIKSALMTT
Sbjct: 528 PQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADL 587
Query: 635 LDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTT 694
DR + ++ A F G+GHVNP+ A++PGL+++ DY+ +LCT
Sbjct: 588 YDRQGKAIKDGNKP---------AGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTL 638
Query: 695 PGIDIHEIRNYT--NQPCNYSM-GHP-YNFNTPSITV--AHLVKTQVVTRTVTNVAEEET 748
G +I T N CN + +P ++ N PSI V T+++TR VTNV +
Sbjct: 639 -GFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNS 697
Query: 749 -YSMSARMQPAIAIEVNPPAMTLK 771
YS++ + I + VNP + K
Sbjct: 698 IYSVNVKAPEGIKVIVNPKRLVFK 721
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 240/776 (30%), Positives = 371/776 (47%), Gaps = 94/776 (12%)
Query: 53 EKIDTTSELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQ 112
++ D T E + ++ L L + E +K+YSY N FA ++P +A+ +
Sbjct: 44 DRPDNTEETIKTHINLLSS-----LNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMM 98
Query: 113 RAPGVKSVERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPS 172
V SV R+ + TT + +F+GLP T +A D++IG +D+GI P S
Sbjct: 99 EMEEVVSVSRNQYRKLHTTKSWDFVGLPL----TAKRHLKAERDVIIGVLDTGITPDSES 154
Query: 173 FGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPL 232
F H P P K++G C P + CN KIIGA++F PA + SP+
Sbjct: 155 FLDHGLGP--PPAKWKGSC--GPYKNFTGCNNKIIGAKYFKHDGNV-----PAGEVRSPI 205
Query: 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAA 292
D DGHG+HT++ AG ++G G A G P AR+A+YK + G D++A
Sbjct: 206 DIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAG 265
Query: 293 IDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT 352
+ A+HDGV+I+S+S+G ++ + + F A++ G+ +AGN GP T
Sbjct: 266 FEAAIHDGVEIISISIGGPIADYSSDSISVGSFH-----AMRKGILTVASAGNDGPSSGT 320
Query: 353 LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSS 412
+ ++ PWI TVAA+ DR +K+ ++LGNGK +G+G+S + +++ LV+ D ++
Sbjct: 321 VTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTD 380
Query: 413 VMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVE 472
KY A C + L++ V+G +++C V T KS G AG ++ +
Sbjct: 381 -DKYLARYCFS-DSLDRKKVKGKVMVCRMGGG---------GVESTIKSYGGAGAIIVSD 429
Query: 473 NVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532
+ P T V S+ + Y ++TR + ++ + +P
Sbjct: 430 QYLDNAQIFMAPA-------TSVNSSVGDIIYRYINSTRSASAVIQKTRQV------TIP 476
Query: 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAW----SPNGTD-EANF 587
AP VA FS+RGPN LLKPDI APG I AA+ S G D + F
Sbjct: 477 -----APFVASFSSRGPNPGSIR-----LLKPDIAAPGIDILAAFTLKRSLTGLDGDTQF 526
Query: 588 VGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQY 647
F ++SGTSMA PH+AG+AA VK HP W+PAAIKSA++T+ ++P+ +
Sbjct: 527 --SKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITS-------AKPISRRVN 577
Query: 648 SETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLC-----TTPGIDIHEI 702
+ E F YG G +NPR A PGL++D Y+ FLC T +
Sbjct: 578 KDAE---------FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGT 628
Query: 703 RNYTNQPCNYSMGHPYNFNTPSITV----AHLVKTQVVTRTVTNVA-EEETYSMSARMQP 757
R+ + +GH + N P+I + A V R VTNV Y+ + R
Sbjct: 629 RSVSCSSIVPGLGHD-SLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPK 687
Query: 758 AIAIEVNPPAMTL-KPGASRKFTVTLTVRSVT-GTYSFGEICMKGSRGHKVNIPVI 811
+ I V P +++ K R F V + + +T G G + K R H V P++
Sbjct: 688 GVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPR-HSVRSPIV 742
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 123/452 (27%), Positives = 179/452 (39%), Gaps = 98/452 (21%)
Query: 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQA 296
HG+H A A N G G+AP A + Y+ L G +V+A +++A
Sbjct: 233 HGTHVAGTVAAN------------GTIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERA 280
Query: 297 VHDGVDILSLSVGP--NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLV 354
V DG D+++LS+G N+P T T L A+ GV + GN GP
Sbjct: 281 VQDGADVMNLSLGNSLNNPDWATSTA--------LDWAMSEGVVAVTSNGNSGP------ 326
Query: 355 SYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVM 414
+ W TV + R I G P TF ++ + VM
Sbjct: 327 --NGW--TVGSPGTSRE----------AISVGATQLPLNEYAVTFGSYSS------AKVM 366
Query: 415 KYSASDCQRPEVLNKNLVEGNILLCGYSFNF----VTGTASIKK--------VSETAKSL 462
Y+ D + LN VE G + +F +TG ++ K ++ AK
Sbjct: 367 GYNKEDDVK--ALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKA 424
Query: 463 GAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKG 522
GA G V+ N+S + +PG+ + + S++ D V + K
Sbjct: 425 GAIGMVV-YNNLS-----GEIEANVPGMSVPTIKLSLE-----------DGEKLVSALKA 467
Query: 523 TGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGT 582
T + + QVA FS+RGP D ++KPDI APG I + +
Sbjct: 468 GETKTTFKLTVSKALGEQVADFSSRGP------VMDTWMIKPDISAPGVNIVSTIPTHDP 521
Query: 583 DEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL---DRAS 639
D G+ GTSMA+PHIAG A++KQ P WS IK+A+M T L D
Sbjct: 522 DHP----YGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
Query: 640 RPLQAQQYSETEAMK------LVTATPFDYGS 665
P AQ M LV+ + YG+
Sbjct: 578 YPHNAQGAGSARIMNAIKADSLVSPGSYSYGT 609
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Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNG----TDEANFVGEGFALIS 596
VA FS+RGP + KPDILAPG I + SPN +++ VG + +S
Sbjct: 329 VASFSSRGPTVYGKE-------KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMS 381
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTK 634
GTSMA P AGIAAL+ Q++P +P +K L T K
Sbjct: 382 GTSMATPICAGIAALILQQNPDLTPDEVKELLKNGTDK 419
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Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P20724|ELYA_BACYA Alkaline elastase YaB OS=Bacillus sp. (strain YaB) GN=ale PE=1 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI+APG + ++ G G+A +GTSMA PH+AG+AALVKQK+P WS I
Sbjct: 300 DIVAPGVGV----------QSTVPGNGYASFNGTSMATPHVAGVAALVKQKNPSWSNVQI 349
Query: 625 KSALMTTTTKLDRASR 640
++ L T T L ++
Sbjct: 350 RNHLKNTATNLGNTTQ 365
|
Digests elastin efficiently, has a substrate preference for Ala in P1 position. Bacillus sp. (strain YaB) (taxid: 72578) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P00782|SUBT_BACAM Subtilisin BPN' OS=Bacillus amyloliquefaciens GN=apr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 23/99 (23%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
S+ Q A FS+ GP + D++APG I ++ G + +
Sbjct: 289 SSNQRASFSSVGPEL-------------DVMAPGVSI----------QSTLPGNKYGAYN 325
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKL 635
GTSMA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 326 GTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL 364
|
Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Has a high substrate specificity to fibrin. Bacillus amyloliquefaciens (taxid: 1390) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 132/308 (42%), Gaps = 62/308 (20%)
Query: 530 LMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVG 589
L+P + +++ F++ GP + + SF KPDI APG IW+ + NG
Sbjct: 568 LLPNQKYTEDKMSDFTSYGP-VSNLSF------KPDITAPGGNIWSTQNNNG-------- 612
Query: 590 EGFALISGTSMAAPHIAGIAALVKQ-----KHPYWSP-AAIKSALMT---TTTKLDRASR 640
+ +SGTSMA+P IAG AL+KQ +P+++ +K +T T +++ A +
Sbjct: 613 --YTNMSGTSMASPFIAGSQALLKQALNNKNNPFYADYKQLKGTALTDFLKTVEMNTA-Q 669
Query: 641 PLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIH 700
P+ Y+ V +P G+G V+ +AA+D E + G
Sbjct: 670 PINDINYNN------VIVSPRRQGAGLVDVKAAID-------ALEKNPSTVVAENGYPAV 716
Query: 701 EIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIA 760
E++++T+ + + T + H + Q+ + T TN Y+ + +
Sbjct: 717 ELKDFTSTDKTFKL-------TFTNRTTHELTYQMDSNTDTNAV----YTSATDPNSGVL 765
Query: 761 IEVNPPAMTLKPG----------ASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPV 810
+ +K G A +FT++L + G + KGS G ++N+P
Sbjct: 766 YDKKIDGAAIKAGSDITVPAGKTAQIEFTLSLPKSFDQQQFVEGFLNFKGSDGSRLNLPY 825
Query: 811 IA-QGNWR 817
+ G+W
Sbjct: 826 MGFFGDWN 833
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q99405|PRTM_BACSK M-protease OS=Bacillus clausii (strain KSM-K16) GN=aprE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N FS A L DI+APG + ++ + G +A ++GTSMA PH+AG+A
Sbjct: 290 NRASFSQYGAGL---DIVAPGVNV----------QSTYPGSTYASLNGTSMATPHVAGVA 336
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKL 635
ALVKQK+P WS I++ L T T L
Sbjct: 337 ALVKQKNPSWSNVQIRNHLKNTATGL 362
|
Bacillus clausii (strain KSM-K16) (taxid: 66692) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | ||||||
| 224087319 | 817 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.877 | 0.0 | |
| 224142711 | 817 | predicted protein [Populus trichocarpa] | 1.0 | 1.0 | 0.878 | 0.0 | |
| 225470678 | 817 | PREDICTED: subtilisin-like protease [Vit | 1.0 | 1.0 | 0.853 | 0.0 | |
| 255573564 | 822 | peptidase, putative [Ricinus communis] g | 0.976 | 0.970 | 0.867 | 0.0 | |
| 356562099 | 817 | PREDICTED: subtilisin-like protease-like | 1.0 | 1.0 | 0.828 | 0.0 | |
| 356558312 | 827 | PREDICTED: subtilisin-like protease-like | 0.995 | 0.983 | 0.836 | 0.0 | |
| 449507422 | 816 | PREDICTED: subtilisin-like protease-like | 0.998 | 1.0 | 0.829 | 0.0 | |
| 356530326 | 825 | PREDICTED: subtilisin-like protease-like | 1.0 | 0.990 | 0.829 | 0.0 | |
| 449461174 | 816 | PREDICTED: subtilisin-like protease-like | 0.998 | 1.0 | 0.828 | 0.0 | |
| 356549936 | 817 | PREDICTED: subtilisin-like protease-like | 1.0 | 1.0 | 0.840 | 0.0 |
| >gi|224087319|ref|XP_002308119.1| predicted protein [Populus trichocarpa] gi|222854095|gb|EEE91642.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1490 bits (3857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/817 (87%), Positives = 770/817 (94%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M EF +VLF + I G+AEVYIVT+EGEP+ISY GG GFEATAVESDEK+D TS+
Sbjct: 1 MRVVEFWRTVLVLFALLINGKAEVYIVTMEGEPVISYTGGIPGFEATAVESDEKLDATSQ 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
LVTSYA+HLE+KHDMLL LF+R TYKKLYSYKHLINGFAVH +P+QAE L+RAP VKSV
Sbjct: 61 LVTSYAQHLEQKHDMLLDSLFDRGTYKKLYSYKHLINGFAVHTSPEQAETLRRAPDVKSV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERDWKVRRLTTHTP+FLGLPTGVWPTGGGFD+AGEDI+IGFVDSGI+P HPSFGS +DP
Sbjct: 121 ERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDKAGEDIIIGFVDSGIFPRHPSFGSPSSDP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSH 240
YGP+PKYRGKCEVDPDTKR FCNGKIIGAQHFAEAAIAA AFNP++DFASP+DGDGHGSH
Sbjct: 181 YGPLPKYRGKCEVDPDTKREFCNGKIIGAQHFAEAAIAAGAFNPSIDFASPMDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG 300
TAAIAAGNNGIPVR+HGHEFG+ASGMAPRARIAVYKALYRLFGGF+ADVVAAIDQAVHDG
Sbjct: 241 TAAIAAGNNGIPVRIHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVHDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDILSLSVGPNSPPATTKTT+LNPFDVTLL AVKAGVFVAQAAGNGGPFPKTLVSYSPWI
Sbjct: 301 VDILSLSVGPNSPPATTKTTYLNPFDVTLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
T+VAAAIDDRRYKNHL LGNGK+L GIGLSP+TH N+T+TLVAANDVLLDSSVMKYS SD
Sbjct: 361 TSVAAAIDDRRYKNHLYLGNGKVLPGIGLSPSTHPNQTYTLVAANDVLLDSSVMKYSPSD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPEVLNKNLVEGN+L+CGYSFNFV GTASIKKVSETAKSLGA GFVLAVENVSPGTKF
Sbjct: 421 CQRPEVLNKNLVEGNVLICGYSFNFVVGTASIKKVSETAKSLGAIGFVLAVENVSPGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
DPVPVGIPGILITDVTKSMDL+DYYNTST RDWTGRVKSFKGTG+IG+GLMPIL+KSAPQ
Sbjct: 481 DPVPVGIPGILITDVTKSMDLIDYYNTSTPRDWTGRVKSFKGTGSIGNGLMPILYKSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDE N+VGEGFA+ISGTSM
Sbjct: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAALVKQKHP+WSPAAIKSAL+TT+TKLDRA RPLQAQQYSETEAMKLVTATP
Sbjct: 601 AAPHIAGIAALVKQKHPHWSPAAIKSALLTTSTKLDRAGRPLQAQQYSETEAMKLVTATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNF 720
FDYGSGHVNPR+ALDPGLIFDAGYEDYLGFLCTTPGID HEIRNYTN PCNY+MGHP N
Sbjct: 661 FDYGSGHVNPRSALDPGLIFDAGYEDYLGFLCTTPGIDAHEIRNYTNTPCNYTMGHPSNL 720
Query: 721 NTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTV 780
NTPSIT++HLVKTQ VTRTVTNVAEEETY ++ARMQPA+AIE NPPAMTL+PGASRKFTV
Sbjct: 721 NTPSITISHLVKTQTVTRTVTNVAEEETYVITARMQPAVAIEANPPAMTLRPGASRKFTV 780
Query: 781 TLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
+LTVRSVTG YSFGEI MKGSRGH+V IPV+A G WR
Sbjct: 781 SLTVRSVTGAYSFGEILMKGSRGHQVRIPVVAMGYWR 817
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142711|ref|XP_002324698.1| predicted protein [Populus trichocarpa] gi|222866132|gb|EEF03263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1483 bits (3839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/817 (87%), Positives = 761/817 (93%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M EF C +VLF + I G+AEVYIVT+ GEP+ISY GG GFEATAVESDE +D TS+
Sbjct: 1 MRVVEFWCTILVLFALLINGKAEVYIVTMVGEPVISYTGGIPGFEATAVESDETLDATSQ 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
LVTSYA+HLE+KHD+LL LF+R TYKKLYSYKHLINGFAVHI+PDQAE L+R VKSV
Sbjct: 61 LVTSYAQHLEQKHDILLDSLFDRGTYKKLYSYKHLINGFAVHISPDQAETLRRTTDVKSV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERDWKVRRLTTHTP+FLGLPTGVWPTGGGFDRAGEDI+IGFVDSGI+P HPSFGSH+ DP
Sbjct: 121 ERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIIIGFVDSGIFPRHPSFGSHNADP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSH 240
YGP+PKYRGKCEVDPDTKR FCNGKIIGAQHFAEAAIAA AFNP++DFASP+DGDGHGSH
Sbjct: 181 YGPLPKYRGKCEVDPDTKREFCNGKIIGAQHFAEAAIAAGAFNPSIDFASPMDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG 300
TAAIAAGNNGIPVR+HGHEFG+ASGMAPRARIAVYKALYRLFGGF+ADVVAAIDQAVHDG
Sbjct: 241 TAAIAAGNNGIPVRIHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVHDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDILSLSVGPNSPPATT TTFLNPFD TLL AVKAGVFV QAAGNGGPFPKTLVSYSPWI
Sbjct: 301 VDILSLSVGPNSPPATTTTTFLNPFDATLLGAVKAGVFVVQAAGNGGPFPKTLVSYSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
T+VAAAIDDRRYKNHL LGNGKIL GIGLSP TH N+T+TLVAANDVLLDSSVMKYS SD
Sbjct: 361 TSVAAAIDDRRYKNHLFLGNGKILPGIGLSPCTHPNQTYTLVAANDVLLDSSVMKYSPSD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPEVLNKNLVEGNILLCGYSFNFV GTASIKKVSETAKSLGA GFVLAVENVSPGTKF
Sbjct: 421 CQRPEVLNKNLVEGNILLCGYSFNFVVGTASIKKVSETAKSLGAIGFVLAVENVSPGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
DPVPVGIPGILITDVTKSMDL+DYYNTST RDWTGRVKSF GTG+IG+GL PILHKSAPQ
Sbjct: 481 DPVPVGIPGILITDVTKSMDLIDYYNTSTPRDWTGRVKSFNGTGSIGNGLEPILHKSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFSARGPNIKDF FQDADLLKPDILAPGSLIWAAWSPNGTDE N+VGEGFA++SGTSM
Sbjct: 541 VALFSARGPNIKDFRFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMMSGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAALVKQKHP+WSPAAIKSALMTT+T LDRA RPLQAQQYSETEAMKLVTATP
Sbjct: 601 AAPHIAGIAALVKQKHPHWSPAAIKSALMTTSTNLDRAGRPLQAQQYSETEAMKLVTATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNF 720
FDYGSGHVNPRAALDPGLI DAGYEDYLGFLCTTPGID+HEIRNYTN PCNYSMGHP N
Sbjct: 661 FDYGSGHVNPRAALDPGLILDAGYEDYLGFLCTTPGIDVHEIRNYTNTPCNYSMGHPSNL 720
Query: 721 NTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTV 780
NTPSITV+HLVKTQ VTR VTNVAEEETY ++ARMQPA+AIE NPPAMTL+PGASRKFTV
Sbjct: 721 NTPSITVSHLVKTQTVTRRVTNVAEEETYVITARMQPAVAIEANPPAMTLRPGASRKFTV 780
Query: 781 TLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
+LTVRSVTGTYSFGEI MKGSRGHKV IPV+A G WR
Sbjct: 781 SLTVRSVTGTYSFGEILMKGSRGHKVRIPVVAMGYWR 817
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225470678|ref|XP_002269786.1| PREDICTED: subtilisin-like protease [Vitis vinifera] gi|296090288|emb|CBI40107.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1464 bits (3790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 697/817 (85%), Positives = 757/817 (92%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M A E C +VLF++ I G AE+YIVTV GEP+ISY+GG GFEATAVESDE ID TSE
Sbjct: 1 MRAMELGCAVVVLFSLLIAGNAEIYIVTVIGEPVISYKGGVPGFEATAVESDETIDVTSE 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
LVTSY+RHLE KHDMLL LLFE TYKKLYSY+HLINGFAVHI+P+QAE+L++APGVKSV
Sbjct: 61 LVTSYSRHLEMKHDMLLSLLFEHGTYKKLYSYRHLINGFAVHISPEQAEVLRQAPGVKSV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERDWKVRRLTTHTP+FLGLPTGVWPTGGGFDRAGEDIVIGFVDSGI+PHHPSF +H+ +P
Sbjct: 121 ERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIFPHHPSFATHNVEP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSH 240
YGP+PKYRGKCEVDPDTKR+FCNGKI+GAQHFAEAAIAA +FNP+VDFASPLDGDGHGSH
Sbjct: 181 YGPIPKYRGKCEVDPDTKRNFCNGKIVGAQHFAEAAIAAGSFNPSVDFASPLDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG 300
TAAIAAGNNGIPVRMHG+EFG+ASGMAPRAR+AVYKALYRLFGGFVADVVAAIDQAVHDG
Sbjct: 241 TAAIAAGNNGIPVRMHGYEFGKASGMAPRARVAVYKALYRLFGGFVADVVAAIDQAVHDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDIL+LSVGPNSPPATTKTTFLNPFD LL+AVKAGVFVAQAAGNGGPFPK+L+SYSPWI
Sbjct: 301 VDILNLSVGPNSPPATTKTTFLNPFDAALLSAVKAGVFVAQAAGNGGPFPKSLLSYSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
+VAAAIDDRRYKNHL LGNGKIL GIGLSP+TH NRTFTLVAANDVLLDSSV+KYS SD
Sbjct: 361 ASVAAAIDDRRYKNHLTLGNGKILPGIGLSPSTHFNRTFTLVAANDVLLDSSVVKYSPSD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPEVLNKNLVEGNILLCGYSFNFV GTASIKKVSETAKSLGA GFVLAVENVSPGTKF
Sbjct: 421 CQRPEVLNKNLVEGNILLCGYSFNFVVGTASIKKVSETAKSLGAIGFVLAVENVSPGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
DPVPV IPGILIT+V+KSMDL++YYNTST+RDWTGRVKSFK TG+IGDGLMPILHKSAPQ
Sbjct: 481 DPVPVSIPGILITEVSKSMDLIEYYNTSTSRDWTGRVKSFKATGSIGDGLMPILHKSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFSARGPNI+DF+FQDADLLKPDILAPGSLIWAAWSPNGTDEAN+VGEGFA+ISGTSM
Sbjct: 541 VALFSARGPNIRDFNFQDADLLKPDILAPGSLIWAAWSPNGTDEANYVGEGFAMISGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAALVKQKHP+WSPAAIKSALMTT+T LDRA PL+AQQYS +E + LVTATP
Sbjct: 601 AAPHIAGIAALVKQKHPHWSPAAIKSALMTTSTTLDRAENPLRAQQYSGSETVTLVTATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNF 720
FDYGSGHV PRAALDPGLIFDA YEDY+GFLCTTPGID HEI+NYT+ PCNY+MG P N
Sbjct: 661 FDYGSGHVTPRAALDPGLIFDAAYEDYIGFLCTTPGIDAHEIKNYTSLPCNYTMGRPSNL 720
Query: 721 NTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTV 780
NTPSIT++HLV TQ VTRTVTNVA ETY +S RM PAIA+E NPPAMTLKPGASRKF+V
Sbjct: 721 NTPSITISHLVGTQTVTRTVTNVAGLETYVISTRMAPAIAVEANPPAMTLKPGASRKFSV 780
Query: 781 TLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
TLT RSVTGTYSFGE+ +KGSRGHKV IPV+A R
Sbjct: 781 TLTARSVTGTYSFGEVLLKGSRGHKVRIPVVAMAYDR 817
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573564|ref|XP_002527706.1| peptidase, putative [Ricinus communis] gi|223532896|gb|EEF34665.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1445 bits (3741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/801 (86%), Positives = 744/801 (92%), Gaps = 3/801 (0%)
Query: 20 GRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTT---SELVTSYARHLEKKHDML 76
G+AE+Y+VT+EGEP+ISYRGG GFE TA+++D+ + S+LVTSYA HLE+ HD L
Sbjct: 22 GKAEIYLVTMEGEPVISYRGGVPGFEPTALDTDDDDEKIDTTSQLVTSYAEHLEQTHDTL 81
Query: 77 LGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHTPEF 136
L LF+ TYKKLYSY+HLINGFAVH +P+QAE L+RA GVKSVERDWKVRRLTTHTP+F
Sbjct: 82 LSSLFDHGTYKKLYSYRHLINGFAVHTSPEQAETLRRASGVKSVERDWKVRRLTTHTPQF 141
Query: 137 LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPD 196
LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF + HTDPYGP+PKYRGKCEVDPD
Sbjct: 142 LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATLHTDPYGPLPKYRGKCEVDPD 201
Query: 197 TKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMH 256
TK+ FCNGKIIGAQHFA+AAIAA FNP++DFASPLDGDGHGSHTAAIAAGNNGIPVRMH
Sbjct: 202 TKKRFCNGKIIGAQHFAQAAIAAGTFNPSIDFASPLDGDGHGSHTAAIAAGNNGIPVRMH 261
Query: 257 GHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPAT 316
GHEFG+ASGMAPRARIAVYKALYR FGG+VADVVAAIDQAVHDGVDILSLSVGPNSP AT
Sbjct: 262 GHEFGKASGMAPRARIAVYKALYRNFGGYVADVVAAIDQAVHDGVDILSLSVGPNSPAAT 321
Query: 317 TKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHL 376
TKTTFLNPFD TLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWIT+VAAAIDDRRYKNHL
Sbjct: 322 TKTTFLNPFDATLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITSVAAAIDDRRYKNHL 381
Query: 377 NLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNI 436
LGNGKILAGIGLSP+TH N+T+TLVAANDVLLDSSV KYS SDCQRPE+LNKNLVEGNI
Sbjct: 382 TLGNGKILAGIGLSPSTHPNQTYTLVAANDVLLDSSVTKYSPSDCQRPELLNKNLVEGNI 441
Query: 437 LLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVT 496
LLCGYSFNFV GTASIKKVSETAKSLGAAGFVLAVEN SPG KFDPVPVG+PGIL+TDVT
Sbjct: 442 LLCGYSFNFVVGTASIKKVSETAKSLGAAGFVLAVENDSPGAKFDPVPVGLPGILVTDVT 501
Query: 497 KSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSF 556
KSMDL+DYYN ST RDWTGRVK F TG+IGDGLMPILHKSAPQVALFSARGPNIKDFSF
Sbjct: 502 KSMDLIDYYNISTPRDWTGRVKRFNATGSIGDGLMPILHKSAPQVALFSARGPNIKDFSF 561
Query: 557 QDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKH 616
QDADLLKPDILAPG+LIWAAWSPNG DE N+VGEGFA+ISGTSMAAPHIAGIAALVKQKH
Sbjct: 562 QDADLLKPDILAPGALIWAAWSPNGIDEPNYVGEGFAMISGTSMAAPHIAGIAALVKQKH 621
Query: 617 PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676
P+WSPAAIKSALMTT+TKLDRA PLQAQQYS+TEAMKLVTATPFDYGSGHVNPRAALDP
Sbjct: 622 PHWSPAAIKSALMTTSTKLDRAGSPLQAQQYSDTEAMKLVTATPFDYGSGHVNPRAALDP 681
Query: 677 GLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVV 736
GLIFDAGYEDYLGFLCTTPGID HEIRNYTN PCNY+MGH YNFNTPSITV+HLVKTQ V
Sbjct: 682 GLIFDAGYEDYLGFLCTTPGIDAHEIRNYTNAPCNYTMGHSYNFNTPSITVSHLVKTQTV 741
Query: 737 TRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEI 796
TRTVTN AEEETY ++ARMQPAIAIEVNP AMT+K GAS+KFT +LTVRSVTGTYSFGEI
Sbjct: 742 TRTVTNAAEEETYVITARMQPAIAIEVNPSAMTIKSGASQKFTASLTVRSVTGTYSFGEI 801
Query: 797 CMKGSRGHKVNIPVIAQGNWR 817
MKGSRGHKV IPV+A G WR
Sbjct: 802 LMKGSRGHKVRIPVVAMGYWR 822
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562099|ref|XP_003549311.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1426 bits (3692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/817 (82%), Positives = 748/817 (91%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M EF C+ IVL + + G AEVYIVTVEGEPIISY GG +GF+ATAVESDE+IDTTSE
Sbjct: 1 MRLLEFGCVLIVLSALLVSGDAEVYIVTVEGEPIISYTGGIDGFKATAVESDEEIDTTSE 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
LVTSYARHLEKKHDMLLGLLFE TY+KLYSY+HLINGFAVHI+P+QAE L+ APGVKSV
Sbjct: 61 LVTSYARHLEKKHDMLLGLLFEEGTYQKLYSYRHLINGFAVHISPEQAETLRHAPGVKSV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERDWKV+RLTTHTP+FLGLPTGVWPTGGGFDRAGEDIVIG VD+GIYP HPSF +H+++P
Sbjct: 121 ERDWKVKRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGLVDTGIYPQHPSFATHNSEP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSH 240
YGPVPKYRGKCE DP+TKRS+CNGKI+GAQHFA AAIAA +FNP++DFASPLDGDGHGSH
Sbjct: 181 YGPVPKYRGKCEADPETKRSYCNGKIVGAQHFAHAAIAAGSFNPSIDFASPLDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG 300
TA+IAAGNNGIPVRM+GHEFGRASGMAPRARIAVYKA+YRLFGGFVADVVAAIDQAV+DG
Sbjct: 241 TASIAAGNNGIPVRMNGHEFGRASGMAPRARIAVYKAIYRLFGGFVADVVAAIDQAVYDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDIL+LSVGP+SPPA TKTTFLNPFD TLL AVKAGVFVAQAAGN GP PKTLVSYSPWI
Sbjct: 301 VDILNLSVGPDSPPAATKTTFLNPFDATLLGAVKAGVFVAQAAGNHGPLPKTLVSYSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
+VAAAIDDRRYKNHL LGNGK LAGIGLSP+TH N T+TLVAANDVLLDSS+MKYS +D
Sbjct: 361 ASVAAAIDDRRYKNHLILGNGKTLAGIGLSPSTHLNETYTLVAANDVLLDSSLMKYSPTD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPE+LNKNL++GNILLCGYSFNFV GTASIKKVSETAK+LGA GFVL VEN+S GTKF
Sbjct: 421 CQRPELLNKNLIKGNILLCGYSFNFVVGTASIKKVSETAKALGAVGFVLCVENISLGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
+PVPVG+PGILI DV+ S +L+DYYN +T RDWTGRVKSF+G G IGDGLMPILHKSAPQ
Sbjct: 481 NPVPVGLPGILIIDVSNSKELIDYYNITTPRDWTGRVKSFEGKGKIGDGLMPILHKSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFSARGPNIKDFSFQ+ADLLKPDILAPGSLIWAAW PNGTDE N+VGE FA+ISGTSM
Sbjct: 541 VALFSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWCPNGTDEPNYVGEAFAMISGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAAL+KQKHP+WSPAAIKSALMTT+T LDRA PL AQQ SE+EAM+LV ATP
Sbjct: 601 AAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGDPLLAQQTSESEAMRLVKATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNF 720
FDYGSGHV+P AALDPGLIFDAGYEDY+GFLCTTP ID+HEIRNYT+ PCN SMG P N
Sbjct: 661 FDYGSGHVDPTAALDPGLIFDAGYEDYIGFLCTTPSIDVHEIRNYTHTPCNTSMGKPSNL 720
Query: 721 NTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTV 780
NTPSIT++HLV+TQVVTRTVTNVAEEETY ++ARM+PA+AIEVNPPAMT+K GASR+F V
Sbjct: 721 NTPSITISHLVRTQVVTRTVTNVAEEETYVITARMEPAVAIEVNPPAMTIKAGASRQFLV 780
Query: 781 TLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
+LTVRSVTG YSFGE+ MKGSRGHKV IPV+A G R
Sbjct: 781 SLTVRSVTGRYSFGEVLMKGSRGHKVRIPVLANGYRR 817
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558312|ref|XP_003547451.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1420 bits (3676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 686/820 (83%), Positives = 758/820 (92%), Gaps = 7/820 (0%)
Query: 5 EFLCIFIV--LFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESD----EKIDTT 58
EF C+FIV LF + G+AEVYIVTVEGEPIISY+GG +GFEATAVESD EK+D+T
Sbjct: 8 EFGCVFIVVLLFGLVKFGKAEVYIVTVEGEPIISYKGGIDGFEATAVESDDDDDEKLDST 67
Query: 59 SELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVK 118
SE+V SYARHLEK+HDMLLG+LFER TY KLYSY+HLINGFAVH++P+QAE L+ APGVK
Sbjct: 68 SEVVVSYARHLEKRHDMLLGMLFERGTYNKLYSYRHLINGFAVHLSPEQAETLRHAPGVK 127
Query: 119 SVERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHT 178
SVERDWKV+RLTTHTP+FLGLPTGVWPTGGG++RAGEDIVIGFVDSGIYPHHPSF +H+T
Sbjct: 128 SVERDWKVKRLTTHTPQFLGLPTGVWPTGGGYERAGEDIVIGFVDSGIYPHHPSFTTHNT 187
Query: 179 DPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHG 238
+PYGPV +YRGKCEVDPDTKRSFCNGKIIGAQHFA+AAIAA AFNP++DF SPLDGDGHG
Sbjct: 188 EPYGPVSRYRGKCEVDPDTKRSFCNGKIIGAQHFAQAAIAAGAFNPSIDFDSPLDGDGHG 247
Query: 239 SHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH 298
SHTA+IAAG NGIPVRMHGHEFG+ASGMAPRARIAVYKALYRLFGGF+ADVVAAIDQAVH
Sbjct: 248 SHTASIAAGRNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAIDQAVH 307
Query: 299 DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP 358
DGVDILSLSVGPNSPP+ TKTTFLNPFD TLL AVKAGVFVAQAAGNGGPFPK+LVSYSP
Sbjct: 308 DGVDILSLSVGPNSPPSNTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKSLVSYSP 367
Query: 359 WITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSA 418
WI TVAAAIDDRRYKNHL LGNGKILAG+GLSP+T N+T+TLVAA DVLLDSSV KYS
Sbjct: 368 WIATVAAAIDDRRYKNHLILGNGKILAGLGLSPSTRLNQTYTLVAATDVLLDSSVTKYSP 427
Query: 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT 478
+DCQRPE+LNKNL++GNILLCGYS+NFV G+ASIK+VSETAK+LGA GFVL VENVSPGT
Sbjct: 428 TDCQRPELLNKNLIKGNILLCGYSYNFVIGSASIKQVSETAKALGAVGFVLCVENVSPGT 487
Query: 479 KFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538
KFDPVPVGIPGILITD +KS +L+DYYN ST RDWTGRVK+F+GTG I DGLMPILHKSA
Sbjct: 488 KFDPVPVGIPGILITDASKSKELIDYYNISTPRDWTGRVKTFEGTGKIEDGLMPILHKSA 547
Query: 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGT 598
PQVA+FSARGPNIKDFSFQ+ADLLKPDILAPGSLIWAAWS NGTDE N+VGEGFA+ISGT
Sbjct: 548 PQVAMFSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWSLNGTDEPNYVGEGFAMISGT 607
Query: 599 SMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTA 658
SMAAPHIAGIAAL+KQKHP+WSPAAIKSALMTT+T LDRA P+ AQ YSETEAMKLV A
Sbjct: 608 SMAAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPILAQLYSETEAMKLVKA 667
Query: 659 TPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPY 718
TPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGID+HEI+NYTN PCN +MGHP
Sbjct: 668 TPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDVHEIKNYTNSPCNNTMGHPS 727
Query: 719 NFNTPSITVAHLVKTQVVTRTVTNVA-EEETYSMSARMQPAIAIEVNPPAMTLKPGASRK 777
N NTPSIT++HLV++Q+VTRTVTNVA EEETY ++ARMQPA+AI+VNPPAMT+K ASR+
Sbjct: 728 NLNTPSITISHLVRSQIVTRTVTNVADEEETYVITARMQPAVAIDVNPPAMTIKASASRR 787
Query: 778 FTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
FTVTLTVRSVTGTYSFGE+ MKGSRGHKV IPV+A G R
Sbjct: 788 FTVTLTVRSVTGTYSFGEVLMKGSRGHKVRIPVLANGYSR 827
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449507422|ref|XP_004163028.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1419 bits (3672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/816 (82%), Positives = 750/816 (91%)
Query: 2 IAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSEL 61
+ F +V I +G+AE+YIVT+EGEPI+SY+G +GFEATA+ESDEKID TSE+
Sbjct: 1 MVVNFQYTVLVFLAILFVGKAEIYIVTIEGEPIVSYKGDLDGFEATAMESDEKIDPTSEI 60
Query: 62 VTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVE 121
VTSYARHLE KHDMLLG+LFER ++KKLYSYKHLINGFAV IT +QAE L+R P VKSVE
Sbjct: 61 VTSYARHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDITHEQAETLRRTPIVKSVE 120
Query: 122 RDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPY 181
RDWKVR+LTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF +++T+P+
Sbjct: 121 RDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATYNTEPF 180
Query: 182 GPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHT 241
GP KY+GKCEVDP+TK+ FCNGKI+GAQHFAEAA AA AFNP + FASPLDGDGHGSHT
Sbjct: 181 GPCMKYKGKCEVDPNTKKDFCNGKIVGAQHFAEAAKAAGAFNPDIHFASPLDGDGHGSHT 240
Query: 242 AAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301
AAIAAGNNGIPVRMHG+EFG+ASGMAPRARIAVYKALYR+FGGFVADVVAAIDQAVHDGV
Sbjct: 241 AAIAAGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGV 300
Query: 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWIT 361
DILSLSVGPNSPPATTK T+LNPFD TLL+AVKAGVFVAQAAGNGGPFPKTLVSYSPWI
Sbjct: 301 DILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIA 360
Query: 362 TVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDC 421
TVAAAIDDRRYKNHL LGNGKILAG+GLSP+TH NRT+TLVAANDVLLDSSV KYS SDC
Sbjct: 361 TVAAAIDDRRYKNHLTLGNGKILAGLGLSPSTHLNRTYTLVAANDVLLDSSVTKYSPSDC 420
Query: 422 QRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFD 481
Q+PEVLNK LVEG +LLCGYSF+FV GTASIKKVS+TAK+LGAAGFVLAVEN+SPG KFD
Sbjct: 421 QKPEVLNKRLVEGKVLLCGYSFSFVVGTASIKKVSQTAKALGAAGFVLAVENISPGAKFD 480
Query: 482 PVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541
PVPVGIPGILITDV+KSMDL+DYYNTST RDWTGRVKSF G+IGDGLMP+L+KSAP+V
Sbjct: 481 PVPVGIPGILITDVSKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEV 540
Query: 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMA 601
ALFSARGPNI+DFSFQDADLLKPDILAPGSLIWAAWSPNGTDE N+VGEGFA+ISGTSMA
Sbjct: 541 ALFSARGPNIRDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMA 600
Query: 602 APHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPF 661
APHIAGIAALVKQKHP WSPAAIKSALMTT+T +DR RPL+AQQ+SETEAMKLVTATPF
Sbjct: 601 APHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRGGRPLKAQQFSETEAMKLVTATPF 660
Query: 662 DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFN 721
DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTT GI++HEI NYTN CN++MGHP+N N
Sbjct: 661 DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTNSACNFTMGHPWNLN 720
Query: 722 TPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVT 781
+PSIT+AHLV TQ+VTR VTNVAEEETY+++ARM PA+AIEVNPPAMTL G+SRKF+VT
Sbjct: 721 SPSITIAHLVGTQIVTRRVTNVAEEETYTITARMDPAVAIEVNPPAMTLLSGSSRKFSVT 780
Query: 782 LTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
LT RS+TGTYSFG++ +KGSRGHKV IPV+A G R
Sbjct: 781 LTARSLTGTYSFGQVLLKGSRGHKVRIPVVAMGYQR 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356530326|ref|XP_003533733.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1418 bits (3670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 684/825 (82%), Positives = 758/825 (91%), Gaps = 8/825 (0%)
Query: 1 MIAAEFLCIFIV--LFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESD-----E 53
M EF C+F+V LF + G+AEVYIVTVEGEP+ISY+GG +GFEATAVESD E
Sbjct: 1 MRLLEFGCVFLVVLLFGLVKFGKAEVYIVTVEGEPVISYKGGIDGFEATAVESDDDDDDE 60
Query: 54 KIDTTSELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQR 113
K+D+TSE+VTSYARHLEK+HDMLLGLLFER TY KLYSY+HLINGFAVH++P+QAE L+
Sbjct: 61 KLDSTSEVVTSYARHLEKRHDMLLGLLFERGTYNKLYSYRHLINGFAVHLSPEQAETLRH 120
Query: 114 APGVKSVERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF 173
APGVKSVERDWKV+RLTTHTP+FLGLPTGVWPTGGG++RAGEDIVIGFVDSGIYPHHPSF
Sbjct: 121 APGVKSVERDWKVKRLTTHTPQFLGLPTGVWPTGGGYERAGEDIVIGFVDSGIYPHHPSF 180
Query: 174 GSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233
+H+T+PYGPV +YRGKCEVDPDTK+SFCNGKI+GAQHFA+AAIAA AFNP++DF SPLD
Sbjct: 181 TTHNTEPYGPVSRYRGKCEVDPDTKKSFCNGKIVGAQHFAQAAIAAGAFNPSIDFDSPLD 240
Query: 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAI 293
GDGHGSHTA+IAAG NGIPVRMHGHEFG+ASGMAPRARIAVYKALYRLFGGF+ADVVAAI
Sbjct: 241 GDGHGSHTASIAAGRNGIPVRMHGHEFGKASGMAPRARIAVYKALYRLFGGFIADVVAAI 300
Query: 294 DQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL 353
DQAVHDGVDILSLSVGPNSPP+ TKTTFLNPFD TLL AVKAGVFVAQAAGNGGPFPK+L
Sbjct: 301 DQAVHDGVDILSLSVGPNSPPSNTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKSL 360
Query: 354 VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSV 413
VSYSPWI TVAAAIDDRRYKNHL LGNGKILAG+GLSP+T N+T+TLVAA DVLLDSS
Sbjct: 361 VSYSPWIATVAAAIDDRRYKNHLILGNGKILAGLGLSPSTRLNQTYTLVAATDVLLDSSA 420
Query: 414 MKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473
KYS +DCQRP++LNKNL++GNILLCGYSFNFV G+ASIK+VSETAK+LGAAGFVL VEN
Sbjct: 421 TKYSPTDCQRPQLLNKNLIKGNILLCGYSFNFVIGSASIKQVSETAKALGAAGFVLCVEN 480
Query: 474 VSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPI 533
VSPGTKFDPVPVGIPGILITD +KS +L+DYYN ST RDWTGRVK+F+GTG I DGLMPI
Sbjct: 481 VSPGTKFDPVPVGIPGILITDASKSKELIDYYNISTPRDWTGRVKTFEGTGKIEDGLMPI 540
Query: 534 LHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFA 593
LHKSAPQVA+FSARGPNIKDF FQ+ADLLKPDILAPGSLIWAAWS NGTDE N+ GEGFA
Sbjct: 541 LHKSAPQVAIFSARGPNIKDFIFQEADLLKPDILAPGSLIWAAWSLNGTDEPNYAGEGFA 600
Query: 594 LISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAM 653
+ISGTSMAAPHIAGIAAL+KQKHP+WSPAAIKSALMTT+T LDRA P+ AQ YSETEAM
Sbjct: 601 MISGTSMAAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPILAQLYSETEAM 660
Query: 654 KLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYS 713
KLV ATPFDYGSGHVNP+AALDPGLIFDAGYEDYLGFLCTTPGID++EI+NYTN PCN +
Sbjct: 661 KLVKATPFDYGSGHVNPQAALDPGLIFDAGYEDYLGFLCTTPGIDVNEIKNYTNSPCNNT 720
Query: 714 MGHPYNFNTPSITVAHLVKTQVVTRTVTNVA-EEETYSMSARMQPAIAIEVNPPAMTLKP 772
MGHP N NTPSIT++HLV+TQ+VTRTVTNVA EEETY +S RMQPA+AIEVNPPAMT+K
Sbjct: 721 MGHPSNLNTPSITISHLVRTQIVTRTVTNVADEEETYVISGRMQPAVAIEVNPPAMTIKA 780
Query: 773 GASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
GASR+FTVTLTVRSVTGTYSFGE+ MKGSRGHKV IPV+A G R
Sbjct: 781 GASRRFTVTLTVRSVTGTYSFGEVLMKGSRGHKVRIPVLANGYSR 825
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461174|ref|XP_004148317.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1417 bits (3668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/816 (82%), Positives = 749/816 (91%)
Query: 2 IAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSEL 61
+ F +V I +G+AE+YIVT+EGEPI+SY+G +GFEATA+ESDEKID TSE+
Sbjct: 1 MVVNFQYTVLVFLAILFVGKAEIYIVTIEGEPIVSYKGDLDGFEATAMESDEKIDPTSEI 60
Query: 62 VTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVE 121
VTSYARHLE KHDMLLG+LFER ++KKLYSYKHLINGFAV IT +QAE L+R P VKSVE
Sbjct: 61 VTSYARHLENKHDMLLGMLFERGSFKKLYSYKHLINGFAVDITHEQAETLRRTPIVKSVE 120
Query: 122 RDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPY 181
RDWKVR+LTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF +++T+P+
Sbjct: 121 RDWKVRKLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFATYNTEPF 180
Query: 182 GPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHT 241
GP KY+GKCEVDP+TK+ FCNGKI+GAQHFAEAA AA AFNP + FASPLDGDGHGSHT
Sbjct: 181 GPCMKYKGKCEVDPNTKKDFCNGKIVGAQHFAEAAKAAGAFNPDIHFASPLDGDGHGSHT 240
Query: 242 AAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301
AAI AGNNGIPVRMHG+EFG+ASGMAPRARIAVYKALYR+FGGFVADVVAAIDQAVHDGV
Sbjct: 241 AAIVAGNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRIFGGFVADVVAAIDQAVHDGV 300
Query: 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWIT 361
DILSLSVGPNSPPATTK T+LNPFD TLL+AVKAGVFVAQAAGNGGPFPKTLVSYSPWI
Sbjct: 301 DILSLSVGPNSPPATTKITYLNPFDATLLSAVKAGVFVAQAAGNGGPFPKTLVSYSPWIA 360
Query: 362 TVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDC 421
TVAAAIDDRRYKNHL LGNGKILAG+GLSP+TH NRT+TLVAANDVLLDSSV KYS SDC
Sbjct: 361 TVAAAIDDRRYKNHLTLGNGKILAGLGLSPSTHLNRTYTLVAANDVLLDSSVTKYSPSDC 420
Query: 422 QRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFD 481
Q+PEVLNK LVEG +LLCGYSF+FV GTASIKKVS+TAK+LGAAGFVLAVEN+SPG KFD
Sbjct: 421 QKPEVLNKRLVEGKVLLCGYSFSFVVGTASIKKVSQTAKALGAAGFVLAVENISPGAKFD 480
Query: 482 PVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541
PVPVGIPGILITDV+KSMDL+DYYNTST RDWTGRVKSF G+IGDGLMP+L+KSAP+V
Sbjct: 481 PVPVGIPGILITDVSKSMDLIDYYNTSTPRDWTGRVKSFDAVGSIGDGLMPLLYKSAPEV 540
Query: 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMA 601
ALFSARGPNI+DFSFQDADLLKPDILAPGSLIWAAWSPNGTDE N+VGEGFA+ISGTSMA
Sbjct: 541 ALFSARGPNIRDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEPNYVGEGFAMISGTSMA 600
Query: 602 APHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPF 661
APHIAGIAALVKQKHP WSPAAIKSALMTT+T +DR RPL+AQQ+SETEAMKLVTATPF
Sbjct: 601 APHIAGIAALVKQKHPNWSPAAIKSALMTTSTTMDRGGRPLKAQQFSETEAMKLVTATPF 660
Query: 662 DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFN 721
DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTT GI++HEI NYTN CN++MGHP+N N
Sbjct: 661 DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTAGINVHEIHNYTNSACNFTMGHPWNLN 720
Query: 722 TPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVT 781
+PSIT+AHLV TQ+VTR VTNVAEEETY+++ARM PA+AIEVNPPAMTL G+SRKF+VT
Sbjct: 721 SPSITIAHLVGTQIVTRRVTNVAEEETYTITARMDPAVAIEVNPPAMTLLSGSSRKFSVT 780
Query: 782 LTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
LT RS+TGTYSFG++ +KGSRGHKV IPV+A G R
Sbjct: 781 LTARSLTGTYSFGQVLLKGSRGHKVRIPVVAMGYQR 816
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549936|ref|XP_003543346.1| PREDICTED: subtilisin-like protease-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1415 bits (3664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 687/817 (84%), Positives = 751/817 (91%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M EF C+ IVL G AEVYIVTVEGEPIISY GG +GFEATAVESDE+IDT SE
Sbjct: 1 MRLLEFGCVLIVLSAFLGCGDAEVYIVTVEGEPIISYTGGIDGFEATAVESDEEIDTASE 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
LV+SYARHLEKKHDMLLGLLFE TY+KLYSY+HLINGFAVHI+P+QAE L+ APGVKSV
Sbjct: 61 LVSSYARHLEKKHDMLLGLLFEEGTYQKLYSYRHLINGFAVHISPEQAETLRHAPGVKSV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERDWKVRRLTTHTP+FLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF +H+ +P
Sbjct: 121 ERDWKVRRLTTHTPQFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFAAHNAEP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSH 240
YGPVPKYRGKCE DPDTKRS+CNGKI+GAQHFA AAIAA AFNP++DFASPLDGDGHGSH
Sbjct: 181 YGPVPKYRGKCEADPDTKRSYCNGKIVGAQHFAHAAIAAGAFNPSIDFASPLDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG 300
TA+IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV+DG
Sbjct: 241 TASIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVYDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDILSLSVGPNSPPA TKTTFLNPFD TLL AVKAGVFVAQAAGNGGPFPKTLVSYSPWI
Sbjct: 301 VDILSLSVGPNSPPAATKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
+VAAAIDDRRYKNHL LGNGK LAGIGLSP+TH N T+TLVAANDVLLDSSVMKYS +D
Sbjct: 361 ASVAAAIDDRRYKNHLILGNGKTLAGIGLSPSTHLNETYTLVAANDVLLDSSVMKYSPTD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPE+LNKNL++GNILLCGYSFNFV G+ASIKKVSETAK+LGA GFVL VEN SPGTKF
Sbjct: 421 CQRPELLNKNLIKGNILLCGYSFNFVVGSASIKKVSETAKALGAVGFVLCVENNSPGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
DPVPVG+PGILITDV+ S +L+DYYN +T RDWTGRVKSF+G G IGDGLMPILHKSAPQ
Sbjct: 481 DPVPVGLPGILITDVSNSKELIDYYNITTPRDWTGRVKSFEGKGKIGDGLMPILHKSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFSARGPNIKDFSFQ+ADLLKPDILAPGSLIWAAW PNGTDE N+VGEGFA+ISGTSM
Sbjct: 541 VALFSARGPNIKDFSFQEADLLKPDILAPGSLIWAAWCPNGTDEPNYVGEGFAMISGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAAL+KQKHP+WSPAAIKSALMTT+T LDRA PL AQQ SE+EAM+LV ATP
Sbjct: 601 AAPHIAGIAALIKQKHPHWSPAAIKSALMTTSTTLDRAGNPLLAQQTSESEAMRLVKATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNF 720
FDYGSGHV+P AALDPGLIFDAGY+DY+GFLCTTP ID+HEIR+YT+ PCN +MG P N
Sbjct: 661 FDYGSGHVDPTAALDPGLIFDAGYKDYVGFLCTTPSIDVHEIRHYTHTPCNTTMGKPSNL 720
Query: 721 NTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTV 780
NTPSIT+++LV+TQVVTRTVTNVAEEETY ++ARM+PA+AIEVNPPAMT+K GASR+F+V
Sbjct: 721 NTPSITISYLVRTQVVTRTVTNVAEEETYVITARMEPAVAIEVNPPAMTIKAGASRQFSV 780
Query: 781 TLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
+LTVRSVT YSFGE+ MKGSRGHKV IPV+A G+ R
Sbjct: 781 SLTVRSVTRRYSFGEVLMKGSRGHKVRIPVLANGHRR 817
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 817 | ||||||
| TAIR|locus:2126485 | 816 | AT4G30020 "AT4G30020" [Arabido | 0.991 | 0.992 | 0.796 | 0.0 | |
| TAIR|locus:2059052 | 815 | SLP3 "AT2G19170" [Arabidopsis | 0.991 | 0.993 | 0.799 | 0.0 | |
| UNIPROTKB|Q5Z852 | 820 | P0468G03.18 "Putative meiotic | 0.996 | 0.992 | 0.687 | 2.89999997732e-316 | |
| UNIPROTKB|Q94EF5 | 849 | P0665A11.6 "Uncharacterized pr | 0.905 | 0.871 | 0.470 | 2.1e-173 | |
| TAIR|locus:2163446 | 840 | AT5G44530 "AT5G44530" [Arabido | 0.949 | 0.923 | 0.439 | 5.2e-168 | |
| TAIR|locus:2128595 | 856 | AT4G20430 "AT4G20430" [Arabido | 0.904 | 0.863 | 0.442 | 1.9e-163 | |
| TAIR|locus:2204619 | 832 | AT1G30600 "AT1G30600" [Arabido | 0.948 | 0.931 | 0.430 | 9.3e-162 | |
| UNIPROTKB|Q0JBB7 | 815 | Os04g0543700 "Os04g0543700 pro | 0.938 | 0.941 | 0.394 | 3.6e-153 | |
| TAIR|locus:2027139 | 832 | ALE1 "AT1G62340" [Arabidopsis | 0.954 | 0.937 | 0.411 | 2e-150 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.395 | 0.420 | 0.368 | 5.1e-85 |
| TAIR|locus:2126485 AT4G30020 "AT4G30020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3455 (1221.3 bits), Expect = 0., P = 0.
Identities = 647/812 (79%), Positives = 714/812 (87%)
Query: 8 CIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYAR 67
C +V FT F+ AE+YIVT+EGEPIISY+GGDNGFEATAVESDEKIDTTSELVTSYAR
Sbjct: 5 CKVLVFFTCFLTVTAEIYIVTMEGEPIISYKGGDNGFEATAVESDEKIDTTSELVTSYAR 64
Query: 68 HLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVR 127
HLE+KHDMLLG+LF +YKKLYSYKHLINGFA H++PDQAE+L+RAPGVKSV+RDWKVR
Sbjct: 65 HLERKHDMLLGMLFVEGSYKKLYSYKHLINGFAAHVSPDQAEMLRRAPGVKSVDRDWKVR 124
Query: 128 RLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTD-PYGPVPK 186
+LTTHTP+FLGLPT VWPTGGG+DRAGEDIVIGF+DSGI+PHHPSF SHHT PYGP P
Sbjct: 125 KLTTHTPQFLGLPTDVWPTGGGYDRAGEDIVIGFIDSGIFPHHPSFASHHTTVPYGPHPS 184
Query: 187 YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAA 246
Y+GKCE DP TK SFCNGKIIG +DFASP+DGDGHGSHTAAIAA
Sbjct: 185 YKGKCEEDPHTKISFCNGKIIGAQHFAEAAKAAGAFNPDIDFASPMDGDGHGSHTAAIAA 244
Query: 247 GNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSL 306
GNNGIPVRMHG+EFG+ASGMAPRARIAVYKALYRLFGGF GVDILSL
Sbjct: 245 GNNGIPVRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSL 304
Query: 307 SVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366
SVGPNSPPATTKTTFLNPFD TLL AVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA
Sbjct: 305 SVGPNSPPATTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 364
Query: 367 IDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEV 426
IDDRRYKNHL LGNGK+LAGIGLSP+T +R++ +V+ANDVLL SS MKY+ SDCQ+PEV
Sbjct: 365 IDDRRYKNHLTLGNGKMLAGIGLSPSTRPHRSYKMVSANDVLLGSSGMKYNPSDCQKPEV 424
Query: 427 LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVG 486
LNK LVEGNILLCGYSFNFV G+ASIKKV+ETAK LGAAGFVL VENVSPGTKFDPVP
Sbjct: 425 LNKKLVEGNILLCGYSFNFVAGSASIKKVAETAKHLGAAGFVLVVENVSPGTKFDPVPSC 484
Query: 487 IPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546
IPGILITDV+KSMDL+DYYN +T+RDW GRVK FK G+IGDGL PILHKSAP+VALFSA
Sbjct: 485 IPGILITDVSKSMDLIDYYNVTTSRDWMGRVKDFKAEGSIGDGLEPILHKSAPEVALFSA 544
Query: 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIA 606
RGPN KDFSFQDADLLKPDILAPGSLIW+AWS NGTDEAN++GEGFALISGTSMAAPHIA
Sbjct: 545 RGPNTKDFSFQDADLLKPDILAPGSLIWSAWSANGTDEANYIGEGFALISGTSMAAPHIA 604
Query: 607 GIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSG 666
GIAALVKQKHP WSPAAIKSALMTT+T +DRA RPLQAQQYSETE + LV ATPFDYGSG
Sbjct: 605 GIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRPLQAQQYSETETVTLVKATPFDYGSG 664
Query: 667 HVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFNTPSIT 726
HVNP AALDPGLIFDAGYEDY+GFLCTTPGID HEI+N+TN PCN+ M HP NFNTPSI
Sbjct: 665 HVNPSAALDPGLIFDAGYEDYIGFLCTTPGIDAHEIKNFTNTPCNFKMVHPSNFNTPSIA 724
Query: 727 VAHLVKTQVVTRTVTNVAEEE-TYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVR 785
++HLV+TQ VTR VTNVAEEE TY++++RM+PAIAIEV+PPAMT++ GASR F+VTLTVR
Sbjct: 725 ISHLVRTQTVTRRVTNVAEEEETYTITSRMEPAIAIEVSPPAMTVRAGASRTFSVTLTVR 784
Query: 786 SVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
SVTG YSFG++ +KGSRGHKV +PV+A G R
Sbjct: 785 SVTGAYSFGQVTLKGSRGHKVTLPVVAMGQRR 816
|
|
| TAIR|locus:2059052 SLP3 "AT2G19170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3439 (1215.6 bits), Expect = 0., P = 0.
Identities = 649/812 (79%), Positives = 708/812 (87%)
Query: 7 LCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYA 66
L IF+V F + + AEVYIVT+EG+PIISY+GG+NGFEATAVESDEKIDT+SELVT YA
Sbjct: 5 LRIFVV-FVLLVAVTAEVYIVTMEGDPIISYKGGENGFEATAVESDEKIDTSSELVTVYA 63
Query: 67 RHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKV 126
RHLE+KHDM+LG+LFE +YKKLYSYKHLINGFA H++P+QAE L+RAPGV+SV++DWKV
Sbjct: 64 RHLERKHDMILGMLFEEGSYKKLYSYKHLINGFAAHVSPEQAETLRRAPGVRSVDKDWKV 123
Query: 127 RRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPK 186
RRLTTHTPEFLGLPT VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF SHH PYGP+P
Sbjct: 124 RRLTTHTPEFLGLPTDVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFASHHRLPYGPLPH 183
Query: 187 YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAA 246
Y+GKCE DP TK+SFCN KI+G +D+ASP+DGDGHGSHTAAIAA
Sbjct: 184 YKGKCEEDPHTKKSFCNRKIVGAQHFAEAAKAAGAFNPDIDYASPMDGDGHGSHTAAIAA 243
Query: 247 GNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSL 306
GNNGIP+RMHG+EFG+ASGMAPRARIAVYKALYRLFGGF GVDILSL
Sbjct: 244 GNNGIPLRMHGYEFGKASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSL 303
Query: 307 SVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366
SVGPNSPP TTKTTFLNPFD TLL AVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA
Sbjct: 304 SVGPNSPPTTTKTTFLNPFDATLLGAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 363
Query: 367 IDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEV 426
IDDRRYKNHL LGNGK+LAG+GLSP T +R +TLV+ANDVLLDSSV KY+ SDCQRPEV
Sbjct: 364 IDDRRYKNHLTLGNGKMLAGMGLSPPTRPHRLYTLVSANDVLLDSSVSKYNPSDCQRPEV 423
Query: 427 LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVG 486
NK LVEGNILLCGYSFNFV GTASIKKV TAK LGAAGFVL VENVSPGTKFDPVP
Sbjct: 424 FNKKLVEGNILLCGYSFNFVVGTASIKKVVATAKHLGAAGFVLVVENVSPGTKFDPVPSA 483
Query: 487 IPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546
IPGILITDV+KSMDL+DYYN ST+RDWTGRVKSFK G+IGDGL P+LHKSAPQVALFSA
Sbjct: 484 IPGILITDVSKSMDLIDYYNASTSRDWTGRVKSFKAEGSIGDGLAPVLHKSAPQVALFSA 543
Query: 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIA 606
RGPN KDFSFQDADLLKPDILAPG LIWAAW PNGTDE N+VGEGFALISGTSMAAPHIA
Sbjct: 544 RGPNTKDFSFQDADLLKPDILAPGYLIWAAWCPNGTDEPNYVGEGFALISGTSMAAPHIA 603
Query: 607 GIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSG 666
GIAALVKQKHP WSPAAIKSALMTT+T +DRA R LQAQQYS+TEA+ LV ATPFDYGSG
Sbjct: 604 GIAALVKQKHPQWSPAAIKSALMTTSTVIDRAGRLLQAQQYSDTEAVTLVKATPFDYGSG 663
Query: 667 HVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFNTPSIT 726
HVNP AALDPGLIFDAGYEDYLGFLCTTPGI HEIRNYTN CNY M HP NFN PSI
Sbjct: 664 HVNPSAALDPGLIFDAGYEDYLGFLCTTPGISAHEIRNYTNTACNYDMKHPSNFNAPSIA 723
Query: 727 VAHLVKTQVVTRTVTNVAE-EETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVR 785
V+HLV TQ VTR VTNVAE EETY+++ARMQP+IAIEVNPPAMTL+PGA+R F+VT+TVR
Sbjct: 724 VSHLVGTQTVTRKVTNVAEVEETYTITARMQPSIAIEVNPPAMTLRPGATRTFSVTMTVR 783
Query: 786 SVTGTYSFGEICMKGSRGHKVNIPVIAQGNWR 817
SV+G YSFGE+ +KGSRGHKV IPV+A G+ R
Sbjct: 784 SVSGVYSFGEVKLKGSRGHKVRIPVVALGHRR 815
|
|
| UNIPROTKB|Q5Z852 P0468G03.18 "Putative meiotic serine proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3033 (1072.7 bits), Expect = 2.9e-316, P = 2.9e-316
Identities = 562/818 (68%), Positives = 663/818 (81%)
Query: 1 MIAAEFLCIFIVLFTIFILGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSE 60
M A E C+ +++ +LG +VYIVT+EGEP++SYRGG GF ATA++ DE ++ TSE
Sbjct: 1 MKALELACLLLIIVPQVVLGTHDVYIVTMEGEPVVSYRGGVEGFPATAIDLDEDMEITSE 60
Query: 61 LVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSV 120
VTSY+ HL + HD LL L TY+KLYSY HLINGFAVH++P QAE L++APGVK V
Sbjct: 61 AVTSYSLHLRRYHDKLLDSLLVEGTYEKLYSYHHLINGFAVHMSPLQAEFLRKAPGVKHV 120
Query: 121 ERDWKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDP 180
ERD K+++LTTHTP+FLGLPTGVWPTGGGFDRAGED+VIGFVDSGIYP HPSF +H TDP
Sbjct: 121 ERDMKIQKLTTHTPQFLGLPTGVWPTGGGFDRAGEDVVIGFVDSGIYPQHPSFSAHKTDP 180
Query: 181 YGPVPKYRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSH 240
YGPVP Y+GKCE+DP T+RSFCNGKI+G VDFASPLDGDGHGSH
Sbjct: 181 YGPVPHYKGKCEMDPVTRRSFCNGKIVGAQHFAKAAIAAGAFNPDVDFASPLDGDGHGSH 240
Query: 241 TAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXG 300
TAAIAAGNNGIPVRMHGHEFG+ASGMAPRARIAVYK LYRLFGG+ G
Sbjct: 241 TAAIAAGNNGIPVRMHGHEFGKASGMAPRARIAVYKVLYRLFGGYVSDVVAAIDQAVQDG 300
Query: 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
VDIL+LSVGPNSPP T+TTFLNPFD LL+AVKAGVFVAQAAGNGGPFPKTLVS+SPWI
Sbjct: 301 VDILNLSVGPNSPPTATRTTFLNPFDAALLSAVKAGVFVAQAAGNGGPFPKTLVSFSPWI 360
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASD 420
TTVAA +DDRRYKNHL LGNGK+L G+G+SPATH N++F+L++A D LL SS KYSA D
Sbjct: 361 TTVAAGVDDRRYKNHLVLGNGKLLPGLGVSPATHENKSFSLISAADALLGSSATKYSALD 420
Query: 421 CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF 480
CQRPE+LNK ++G ILLCGYSFN+++GTASIKKVSETA+SLGAAGF++AVEN PGTKF
Sbjct: 421 CQRPELLNKRKIQGKILLCGYSFNYISGTASIKKVSETARSLGAAGFIVAVENSYPGTKF 480
Query: 481 DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540
DPVPV +PGILITDV+++ DL+DYYN+ST RDW GR +F+ T I DGL P L+ SAPQ
Sbjct: 481 DPVPVSMPGILITDVSRTKDLIDYYNSSTIRDWAGRATTFQATAAIADGLAPTLYNSAPQ 540
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
VALFS+RGP++KDFSFQDAD+LKPDILAPG+LIWAAW+PNGTDEAN+ GEGFA++SGTSM
Sbjct: 541 VALFSSRGPDVKDFSFQDADVLKPDILAPGNLIWAAWAPNGTDEANYAGEGFAMVSGTSM 600
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATP 660
AAPHIAGIAAL+KQK+P WSP+AIKSALMTT+ LD+ S PL+AQQYS +E M L ATP
Sbjct: 601 AAPHIAGIAALIKQKNPKWSPSAIKSALMTTSNTLDKGSHPLRAQQYSTSEIMTLTRATP 660
Query: 661 FDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYS---MGHP 717
FDYGSG VNP+AALDPGL+ DA ++DY+ FLC+ P ++ E+ N T C+ S P
Sbjct: 661 FDYGSGAVNPKAALDPGLVLDATHQDYITFLCSIPDVEHSEVSNITGSTCSSSSKVQQRP 720
Query: 718 YNFNTPSITVAHLVKTQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASR 776
Y+ N PSIT++ L TQ V RTVT+VA E ETY++ RM P IA+EV+PPA+T+ PGASR
Sbjct: 721 YDLNIPSITISQLRGTQTVKRTVTSVAAEAETYTIMTRMSPEIALEVSPPALTVLPGASR 780
Query: 777 KFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQG 814
+ T TLT RSVTGTYSFGEI MKG RGH V IPV+A G
Sbjct: 781 EITATLTARSVTGTYSFGEITMKGDRGHLVRIPVVAMG 818
|
|
| UNIPROTKB|Q94EF5 P0665A11.6 "Uncharacterized protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1685 (598.2 bits), Expect = 2.1e-173, P = 2.1e-173
Identities = 355/754 (47%), Positives = 463/754 (61%)
Query: 64 SYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERD 123
+Y +L + + LL + Y KLYSY++LINGFAV ITP QAE L V +V D
Sbjct: 91 NYGSYLVRLQNSLLKRTLRGERYIKLYSYRYLINGFAVVITPQQAERLSMTKEVANVMLD 150
Query: 124 WKVRRLTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHH-TDPYG 182
+ VR TTHTPEFLGLP G W GG AG+ +V+G +D+GI P HPSF TD Y
Sbjct: 151 FSVRTATTHTPEFLGLPQGAWVQEGGPQCAGQGVVVGLIDTGIDPTHPSFADDLITDSY- 209
Query: 183 PVPK-YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHT 241
PVP Y G CEV D CN K++G D ASP D DGHG+HT
Sbjct: 210 PVPAHYSGICEVTNDFPSGSCNRKLVGARHFAASAITRGVFNASQDHASPSDSDGHGTHT 269
Query: 242 AAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGV 301
A+IAAGN+GIPV + GH FG ASGMAPRA IAVYKALY+ FGGF V
Sbjct: 270 ASIAAGNHGIPVVVAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAIDQAAEDNV 329
Query: 302 DILSLSVGPNS-PPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWI 360
DI+SLS+ PN PP TF NP D+ LL+AVKAG+FV QAAGN GP PK++ SYSPWI
Sbjct: 330 DIISLSITPNRRPPGLA--TFFNPIDMALLSAVKAGIFVVQAAGNTGPSPKSMSSYSPWI 387
Query: 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDS--SVMKYSA 418
TV A+ DR Y N++ LGN + G+GL+P T G+ FTLVAA L ++ S + S
Sbjct: 388 FTVGASAHDREYNNYVVLGNNLTITGVGLAPGTDGDSMFTLVAAPHALKNNVASPTEMSL 447
Query: 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT 478
+CQ L+++L+ G IL+C YS FV G +S+K+ +TAK++ AAG + ++ G
Sbjct: 448 GECQDSSHLDEDLIRGKILVCSYSIRFVLGLSSVKQALDTAKNVSAAGVIFYLDPFVIGF 507
Query: 479 KFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTG-RVKSFKGTGTIGDGLMPILHKS 537
+ +P P+ +PG++I S ++YYN S RD T ++ SF I G P S
Sbjct: 508 QLNPTPMDMPGLIIPSSDDSKVFLNYYNESLVRDETSNKIVSFGAIAKILGGQNPNYGIS 567
Query: 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISG 597
AP+V +SARGP+ +D S +AD+LKP+++APGS IW AWS G D A F GE FA+ISG
Sbjct: 568 APKVMFYSARGPDPEDNSLANADILKPNLIAPGSSIWGAWSSLGLDSAEFAGESFAIISG 627
Query: 598 TSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQ-YSETEAMKLV 656
TSMAAPH+AG+AALVKQK PY+SPAAI SAL TTT+ DR P+ AQ+ Y + +
Sbjct: 628 TSMAAPHVAGLAALVKQKFPYFSPAAIGSALSTTTSLSDREGNPIMAQRTYGNPNSTQS- 686
Query: 657 TATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGH 716
ATPFD G+G VN AALDPGLIFD+ Y+D+ FLC G + NYT C+ S
Sbjct: 687 PATPFDMGNGFVNATAALDPGLIFDSSYDDFFSFLCGING-SAPVVMNYTGNSCSSSAMT 745
Query: 717 PYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASR 776
+ N PSIT+A L +++ +TRTVTNVA +E Y++S +A+ +P + G +
Sbjct: 746 GADLNLPSITIAVLNQSRTITRTVTNVASDERYTVSYSAPYGVAVSASPAQFFIPSGQRQ 805
Query: 777 KFTVTLTVRSVTGTY-SFGEICMKGSRGHKVNIP 809
+ T + ++ GT SFG + G +GH+V IP
Sbjct: 806 QVTFVVNA-TMNGTSASFGSVGFYGDKGHRVMIP 838
|
|
| TAIR|locus:2163446 AT5G44530 "AT5G44530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
Identities = 354/805 (43%), Positives = 480/805 (59%)
Query: 24 VYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELV---TSYARHLEKK-------H 73
VYIVT++ PI+ FE ++ +K T +L S RH + K H
Sbjct: 38 VYIVTLKQPPIVHL------FEEQELKH-KKSKFTPKLRPRNNSRKRHGKSKIPSVVQSH 90
Query: 74 DMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHT 133
D L + + Y KLYSY +LINGFA+ I QAE L V ++ D+ VR TT+T
Sbjct: 91 DSFLRKTLKGEKYIKLYSYHYLINGFALFINSQQAEKLSMRKEVANIVLDYSVRTATTYT 150
Query: 134 PEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPK-YRGKCE 192
P+F+GLP G W GGF+ AGE ++IGF+D+GI P+HPSF + + P+PK + G CE
Sbjct: 151 PQFMGLPQGAWVKEGGFEIAGEGVIIGFIDTGIDPNHPSFNDNDSKRSYPIPKHFSGVCE 210
Query: 193 VDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAAGNNGIP 252
V PD CN K+IG D+ASP DGDGHG+HTA++AAGN+G+P
Sbjct: 211 VTPDFPSGSCNKKLIGARHFAQSAVTRGIFNSSEDYASPFDGDGHGTHTASVAAGNHGVP 270
Query: 253 VRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSLSVGPN- 311
V + H FG ASG+APRA I+VYKALY+ FGGF GVDILSLS+ PN
Sbjct: 271 VIVSNHNFGYASGIAPRAFISVYKALYKSFGGFAADVVAAIDQAAQDGVDILSLSITPNR 330
Query: 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRR 371
PP TF NP D+ LL+AVKAG+FV QAAGN GP PKT+ S+SPWI TV A+ DR
Sbjct: 331 KPPGVA--TFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKTMSSFSPWIFTVGASSHDRV 388
Query: 372 YKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDS-SVMK-YSASDCQRPEVLNK 429
Y N L LGN + G+G + T + + +++A L +S SV K +CQ E ++
Sbjct: 389 YSNSLTLGNNVTIPGMGFAIPTDSGKMYKMISAFHALNNSTSVDKDMYVGECQDYENFDQ 448
Query: 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPG 489
+ V G +L+C YS FV G ++IK+ + AK+L A G + ++ G + +P P+ +PG
Sbjct: 449 DRVSGKLLICSYSARFVLGLSTIKQALDVAKNLSATGVIFYIDPYVLGFEINPTPMDMPG 508
Query: 490 ILITDVTKSMDLVDYYNTSTTRDWTGR-VKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548
I+I V S L+ YYN+S RD T + + SF I GL AP+V +SARG
Sbjct: 509 IIIPSVEDSKTLLKYYNSSIQRDVTTKEIVSFGAVAAIEGGLNANFSNRAPKVMYYSARG 568
Query: 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGI 608
P+ +D SF DAD+LKP+++APG+ IW AWS TD F GE FA++SGTSMAAPH+AG+
Sbjct: 569 PDPEDNSFNDADVLKPNLVAPGNSIWGAWSSASTDSTEFEGEKFAMMSGTSMAAPHVAGV 628
Query: 609 AALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQ-YSETEAMKLVTATPFDYGSGH 667
AAL+KQ +P ++P+ I SAL TT D P+ AQ+ YS + L TATP D GSG
Sbjct: 629 AALIKQSYPQFTPSTISSALSTTALLNDNKGSPIMAQRTYSNPD-QSLYTATPSDMGSGF 687
Query: 668 VNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPC--NYSMGHPYNFNTPSI 725
VN AALDPGL+FD +EDY+ FLC G D + NYT C N + ++ N PSI
Sbjct: 688 VNATAALDPGLVFDTSFEDYISFLCGINGSDT-VVFNYTGFRCPANNTPVSGFDLNLPSI 746
Query: 726 TVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVR 785
TV+ L TQ R++ N+A ETY++ ++++V+P ++ G ++ +VTLTV
Sbjct: 747 TVSTLSGTQTFQRSMRNIAGNETYNVGWSPPYGVSMKVSPTQFSIAMGENQVLSVTLTVT 806
Query: 786 SVTGTYSFGEICMKGSRGHKVNIPV 810
+ + SFG I + G+ GH VNIPV
Sbjct: 807 KNSSSSSFGRIGLFGNTGHIVNIPV 831
|
|
| TAIR|locus:2128595 AT4G20430 "AT4G20430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1591 (565.1 bits), Expect = 1.9e-163, P = 1.9e-163
Identities = 332/751 (44%), Positives = 450/751 (59%)
Query: 69 LEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128
+ + HD LL + + Y KLYS+ +LINGFAV ++ QAE L R V ++ D+ VR
Sbjct: 99 IAQAHDSLLRNALKGEKYIKLYSFHYLINGFAVFVSSQQAETLSRRREVANIVLDFSVRT 158
Query: 129 LTTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSF-GSHHTDPYGPVPK- 186
TT+TP+F+GLP G W GG++ AGE IVIGF+D+GI P HPSF G+ + P+P
Sbjct: 159 ATTYTPQFMGLPKGAWVKEGGYETAGEGIVIGFIDTGIDPTHPSFNGTDTSQRQYPIPNH 218
Query: 187 YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAA 246
+ G CEV PD CN K++G D+ASP DGDGHG+HTA+IAA
Sbjct: 219 FSGVCEVTPDFPSGSCNRKLVGARHFAQSAITRGIFNSSEDYASPFDGDGHGTHTASIAA 278
Query: 247 GNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSL 306
GN+G+ + GH FG ASG+APRA I+VYKALY+ FGGF GVDILSL
Sbjct: 279 GNHGVSAVVSGHNFGSASGIAPRAHISVYKALYKSFGGFAADVVAAIDQAAQDGVDILSL 338
Query: 307 SVGPNS-PPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAA 365
S+ PN PP TF NP D+ +L+AVKAG+FV QAAGN GP PK++ S+SPWI TV A
Sbjct: 339 SITPNRRPPGVA--TFFNPLDMAMLSAVKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGA 396
Query: 366 AIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLD-SSVMKYS--ASDCQ 422
A DR Y N + LGN + G+GL+ T + +T+++A D L + SSV+ +CQ
Sbjct: 397 ASHDRDYSNSIVLGNNVSIPGVGLALRTDEGKKYTMISALDALKNKSSVVDKDMYVGECQ 456
Query: 423 RPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDP 482
+K+++ GN+L+C YS FV G ++IK+ AK+L A G V ++ G + +P
Sbjct: 457 DYGSFDKDVIRGNLLICSYSIRFVLGLSTIKQALAVAKNLSAKGVVFYMDPYVLGFQINP 516
Query: 483 VPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGR-VKSFKGTGTIGDGLMPILHKSAPQV 541
P+ +PGI+I S L+ YYN+S RD T + + F I G AP++
Sbjct: 517 TPMDMPGIIIPSAEDSKVLLKYYNSSLVRDGTTKEIVRFGAVAAIAGGQNANFSNRAPKI 576
Query: 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMA 601
+SARGP+ +D F DAD+LKP+++APG+ IW AWS T+ F GE FA++SGTSMA
Sbjct: 577 MYYSARGPDPQDSLFNDADILKPNLVAPGNSIWGAWSSAATESTEFEGESFAMMSGTSMA 636
Query: 602 APHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPF 661
APH+AG+AALVKQK +SP+AI SAL TT+ D + AQ+ + ATPF
Sbjct: 637 APHVAGVAALVKQKFRKFSPSAIASALSTTSVLFDNKGEAIMAQRAYANPDQTISPATPF 696
Query: 662 DYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPC--NYSMGHPYN 719
D G+G VN AALDPGLIFD +EDY+ FLC G + NYT C N + +
Sbjct: 697 DMGNGFVNATAALDPGLIFDTSFEDYMSFLCGING-SAPVVFNYTGTNCLRNNATISGSD 755
Query: 720 FNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFT 779
N PSITV+ L T+ V R +TN+A ETY++S + I V+P ++ G ++ +
Sbjct: 756 LNLPSITVSKLNNTRTVQRLMTNIAGNETYTVSLITPFDVLINVSPTQFSIASGETKLLS 815
Query: 780 VTLTVRSVTGTYSFGEICMKGSRGHKVNIPV 810
V LT + + SFG I + G+ GH V IPV
Sbjct: 816 VILTAKRNSSISSFGGIKLLGNAGHIVRIPV 846
|
|
| TAIR|locus:2204619 AT1G30600 "AT1G30600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
Identities = 345/801 (43%), Positives = 470/801 (58%)
Query: 24 VYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLE--KKHDMLLGLLF 81
VYIVT++ P + + G ++ ++ + T+S++ + R + HD LL +
Sbjct: 36 VYIVTLKDRPSVHFSGRESSDSKHSLTA-----TSSQIYRTLNRSASIIRVHDSLLRNVL 90
Query: 82 ERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHTPEFLGLPT 141
++ Y KLYSY +LINGF+ +T QA+ L V++V D+ V + TTHTP+FLGLP
Sbjct: 91 RKENYLKLYSYHYLINGFSAVLTRKQADRLAAREEVENVVLDFLVEKATTHTPQFLGLPR 150
Query: 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFG---SHHTDPYGPVPKYRGKCEVDPDTK 198
G W GG + AGE +VIGF+D+GI P HPSF S HT Y P + G CEV
Sbjct: 151 GAWLRDGGSEYAGEGVVIGFIDTGIDPTHPSFSDKISGHT--YSVPPHFTGVCEVTIGFP 208
Query: 199 RSFCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGH 258
CN K+IG D ASP DG+GHG+HTA++AAGN+GIPV + GH
Sbjct: 209 PGSCNRKLIGARHFAESALSRGVLNSSQDDASPFDGEGHGTHTASVAAGNHGIPVVVAGH 268
Query: 259 EFGRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSLSVGPNS-PPATT 317
G ASGMAPRA IA+YKALY+ FGGF GVDI++LS+ PN PP
Sbjct: 269 RLGNASGMAPRAHIAIYKALYKRFGGFAADIIAAIDQAAQDGVDIINLSITPNRRPPGIA 328
Query: 318 KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLN 377
TF NP D+ LL+AVKAG+FV QAAGN GP PK++ S+SPWI TV A DR Y N +
Sbjct: 329 --TFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSSFSPWIFTVGATSHDRVYSNSII 386
Query: 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLD-SSVMK-YSASDCQRPEVLNKNLVEGN 435
LGN + G+GL+ T LV A L + ++VM +CQ ++ LV+G
Sbjct: 387 LGNNVTIPGVGLASGTR--IMHKLVLATHALRNGTTVMDAIYVGECQDSSSFDQKLVQGK 444
Query: 436 ILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDV 495
IL+C Y+ F+ G ++IK+ TAK+L AAG V ++ + G + P+ IPGILI+
Sbjct: 445 ILVCSYTVRFILGVSTIKQALLTAKNLTAAGLVFYIDPSATGFQMTSSPMDIPGILISSP 504
Query: 496 TKSMDLVDYYNTSTTRD-WTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDF 554
S L+ YYN+S R+ +G++ I G+ P +AP+V FSARGP+ +D
Sbjct: 505 QDSQALLRYYNSSLLRENGSGKIVGSASVAKIVGGMRPTYGITAPKVMYFSARGPDPEDD 564
Query: 555 SFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ 614
SF DAD++KP+++APG+ IW AWSP G +F GE FA+ SGTSM+APH+ GIAAL+KQ
Sbjct: 565 SFVDADIMKPNLVAPGNAIWGAWSPLGIGTNDFQGERFAMESGTSMSAPHVTGIAALIKQ 624
Query: 615 KHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
K P+++PAAI SAL TT + DR + AQ+ + ATPFD GSG VN AAL
Sbjct: 625 KFPHFTPAAIASALSTTASLSDRKGEHIMAQRTVLNPDISQSPATPFDMGSGFVNATAAL 684
Query: 675 DPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCN-YSMG-HPYNFNTPSITVAHLVK 732
DPGLIFD GY +Y+ FLC G + NYT + C+ Y+ + N PS+T+A LV
Sbjct: 685 DPGLIFDIGYNEYMKFLCGINGSS-PVVLNYTGESCSSYNSSLAASDLNLPSVTIAKLVG 743
Query: 733 TQVVTRTVTNVAE---EETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTG 789
T+ V R VTN+A ETY + +++++V+P T+ G +R ++
Sbjct: 744 TRAVLRWVTNIATTATNETYIVGWMAPDSVSVKVSPAKFTIGNGQTRVLSLVFRAMKNVS 803
Query: 790 TYSFGEICMKGSRGHKVNIPV 810
SFG I + G RGH VNIPV
Sbjct: 804 MASFGRIGLFGDRGHVVNIPV 824
|
|
| UNIPROTKB|Q0JBB7 Os04g0543700 "Os04g0543700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 3.6e-153, P = 3.6e-153
Identities = 314/795 (39%), Positives = 456/795 (57%)
Query: 22 AEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLEKKHDMLLGLLF 81
A+V++V +E +PIIS + S +K+ E Y KHD+ L
Sbjct: 33 AKVFMVVMEDDPIISPKS-----------SQKKV-MRGEEAQKYKAMTTTKHDIFLDSFL 80
Query: 82 ERDTYKKLYSYKHLINGFAVHITPDQA-EILQRAPGVKSVERDWKVRRLTTHTPEFLGLP 140
+YKKLYSY HL+NGFA++ ++A + L A GV+ ++ D K+ ++TT+TP ++G
Sbjct: 81 PAGSYKKLYSYTHLLNGFAIYAKSEKAIKTLSGAKGVRLIQEDIKMAKMTTYTPRYIGAN 140
Query: 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRS 200
VWP GG ++AG+ +VIG VD+GI P +PSF S P ++G C+
Sbjct: 141 V-VWPLLGGAEKAGDGVVIGMVDTGIDPSNPSFLSTSDQAKPPPASFKGTCQTGERFPPD 199
Query: 201 FCNGKIIGXXXXXXXXXXXXXXXXXVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEF 260
CNGKI+G + +ASP D DGHGSHTA+ AAGN P G+ F
Sbjct: 200 SCNGKIVGARWFARAGQATGEFNATMHYASPYDPDGHGSHTASTAAGNFHTPAISKGYNF 259
Query: 261 GRASGMAPRARIAVYKALYRLFGGFXXXXXXXXXXXXXXGVDILSLSVGPNSPPATTKTT 320
G ASG+AP A +A+YKA Y FGG+ GVDI+SLS+GP + + +
Sbjct: 260 GHASGVAPGAHLAIYKAAYS-FGGYMSDVIAAVDKAVEDGVDIISLSLGPTTI-TSGPAS 317
Query: 321 FLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGN 380
FLN + LL A KAG+ V QA GNGGP ++VS+SPWIT+V A+ DR+Y + +GN
Sbjct: 318 FLNLLETQLLLATKAGISVVQAVGNGGPDANSVVSFSPWITSVGASTTDRKYNKSIIIGN 377
Query: 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCG 440
G++ + GLSP+T G + L A+DV +S +S+CQ P+V ++LV+G +++C
Sbjct: 378 GQVFSCGGLSPSTPGETMYPLALADDVCNTNSTG--GSSNCQDPDVFIRSLVQGKVIICM 435
Query: 441 Y-SFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT-KFDPV-PVGIPGILITDVTK 497
+ S N+ G + + +T + +GAAG ++ + S ++ P P IP ++ +
Sbjct: 436 FVSSNYYEGDF-LAGIVDTIQKIGAAGVIITDRSSSDSDIEYHPTFPTSIPSAIVVNSAD 494
Query: 498 SMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQ 557
+ L++YY+ + RD G V F T I DG I + AP VA +S+RGP++ D Q
Sbjct: 495 AQALLEYYDDNLVRDKEGSVTKFGATIRILDGRRAIYTREAPVVAEYSSRGPDVDDMQMQ 554
Query: 558 DADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617
AD+LKP+++APG IW AWSP F GE +A++SGTSMA PH+AG+ AL++Q+HP
Sbjct: 555 AADVLKPNVMAPGHHIWGAWSPTSDAMVEFQGESYAMLSGTSMATPHVAGVVALIRQRHP 614
Query: 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPG 677
WSPA + SA+MTT DR+ RPL A++ + L ATPFD G+G +N A+DPG
Sbjct: 615 KWSPAMVMSAIMTTADVTDRSGRPLMARR----DGGVLERATPFDMGAGAINAARAVDPG 670
Query: 678 LIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGH-PYNFNTPSITVAHLVKTQVV 736
L+FDAGY DYL FLC PG+D + PC S + N PS+TVA LV ++ V
Sbjct: 671 LVFDAGYRDYLQFLCAVPGVDDAAVLRAVGVPCPPSRARWCSDLNAPSVTVASLVGSRRV 730
Query: 737 TRTVTNV-AEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGE 795
R VT+V AE ETY + +A+ V+P + PGA+ + L + T+SFGE
Sbjct: 731 DRRVTSVGAENETYMAHVQAPDGVAVRVSPDTFAVAPGATATLRIVLNTTAPGNTFSFGE 790
Query: 796 ICMKGSRGHKVNIPV 810
+ ++G + H V IP+
Sbjct: 791 VVLRGDKKHTVRIPL 805
|
|
| TAIR|locus:2027139 ALE1 "AT1G62340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 343/834 (41%), Positives = 464/834 (55%)
Query: 7 LCIFIVLFTIFILGRAE--------------VYIVTVEGEPIISYRGGDN-GFEATAVES 51
+CIF VL IL RAE +Y + VEGEP+ ++R N +A A+E
Sbjct: 18 VCIF-VLVVCAILSRAEEKEGKGENDDHIPKIYSILVEGEPL-AFRASTNINSKAMALE- 74
Query: 52 DEKIDTTSELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEIL 111
A+ +E+ HD +LG E+ +Y KLYS+KH+IN AV T QA+ L
Sbjct: 75 --------------AKKIEEIHDEILGSTLEKGSYTKLYSFKHVINAIAVRTTASQAKKL 120
Query: 112 QRAPGVKSVERDWKVRRLTTHTPEFLGLPTGVWP--TGGGFDRAGEDIVIGFVDSGIYPH 169
+ GVK+VE D V+ +TT+TP+FL LP VW + G RAGEDIVIGFVD+GI P
Sbjct: 121 GKTKGVKAVEEDKGVKLMTTYTPDFLELPQQVWQKISNEGDRRAGEDIVIGFVDTGINPT 180
Query: 170 HPSFGSHH-TDPYGP-VPK--YRGKCEVDPDTKRSFCNGKIIGXXXXXXXXXXXXXXXXX 225
HPSF + T+PY + + + G CE+ P CNGKII
Sbjct: 181 HPSFAALDLTNPYSSNLSRLHFSGDCEIGPFFPPGSCNGKIISARFFSAGARASGALNSS 240
Query: 226 VDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGF 285
+D SP D GHGSH A+IAAGN G+PV + G +GRASGMAPR+RIAVYKA+Y G
Sbjct: 241 LDILSPFDASGHGSHVASIAAGNAGVPVIVDGFFYGRASGMAPRSRIAVYKAIYPSIGTL 300
Query: 286 XXXXXXXXXXXXXXGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGN 345
GVD+L+LSVGP+ PP K T L FD+ +L A KAGVFV QA GN
Sbjct: 301 VDVIAAIDQAIMD-GVDVLTLSVGPDEPPVD-KPTVLGIFDLAMLLARKAGVFVVQAVGN 358
Query: 346 GGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFT--LVA 403
GP P +++SYSPW+ VAA DR Y L L G+ + G+GLS T G LV
Sbjct: 359 NGPSPSSVLSYSPWVVGVAAGNTDRSYPAPLILDGGQTVQGVGLSGPTLGAPLVQHRLVL 418
Query: 404 AND-VLLDSSVMKYSASD---CQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETA 459
A D V + SV++ D CQRPE + V G+I++C +S F +++ +++TA
Sbjct: 419 AKDAVRTNGSVLQPLTRDIEECQRPENFDPAAVFGSIVICTFSDGFYNQMSTVLAITQTA 478
Query: 460 KSLGAAGFVLAVENVSPGTKF-DPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVK 518
++LG GF+L + N G +PV PGILI V+ + ++ YY T RD G
Sbjct: 479 RTLGFMGFIL-IANPRFGDYVAEPVIFSAPGILIPTVSAAQIILRYYEEKTFRDTRGVAT 537
Query: 519 SFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWS 578
F IG+G + AP V+ FS+RGP D + D+LKPDILAPG IW AWS
Sbjct: 538 QFGARARIGEGRNSVFAGKAPVVSRFSSRGPAFIDATRSPLDVLKPDILAPGHQIWGAWS 597
Query: 579 -PNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDR 637
P+ D G FA++SGTSMA PHIAGI AL+KQ +P W+PA I SA+ TT + D
Sbjct: 598 LPSAFDPI-LTGRSFAILSGTSMATPHIAGIGALIKQLNPSWTPAMIASAISTTANEYDS 656
Query: 638 ASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGI 697
+ A+ Y E +L + FD+G+GHVNP ALDPGL+ AG+EDY+ FLC+ P I
Sbjct: 657 NGEIISAEYY---ELSRLFPSNHFDHGAGHVNPARALDPGLVLPAGFEDYISFLCSLPNI 713
Query: 698 DIHEIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTRTVTNVAEE-ETYSMSARMQ 756
IR+ T C ++ HP N N PS+T++ L ++ VV R+ +V+ + ETY S
Sbjct: 714 SPATIRDATGVLCTTTLSHPANLNHPSVTISALKESLVVRRSFQDVSNKTETYLGSVLPP 773
Query: 757 PAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPV 810
+ + P T+ P ++ + V V ++FGE+ + GS H + IP+
Sbjct: 774 NGTTVRLTPTWFTVPPQKTQDLDIEFNVTQVLNKFTFGEVVLTGSLNHIIRIPL 827
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 5.1e-85, Sum P(2) = 5.1e-85
Identities = 132/358 (36%), Positives = 173/358 (48%)
Query: 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDL----VDYY-NTST---TRDWTGRVKSF 520
+AVE V K V V L D+ S+D+ VDY T+ T V F
Sbjct: 424 VAVETVK---KARGVGVIFAQFLTKDIASSLDIPCVQVDYQVGTAILAYTTSMRNPVAQF 480
Query: 521 KGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN 580
TI L+ AP+VA FS+RGP S +LKPDI APG I AAWSP
Sbjct: 481 SFPKTIVGELV------APEVAYFSSRGP-----SSLSPSILKPDIAAPGVNILAAWSPA 529
Query: 581 GTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASR 640
+ F + SGTSM+ PHI+G+ AL+K HP WSPAA+KSAL+TT D
Sbjct: 530 AAISSAIGSVNFKIDSGTSMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGF 589
Query: 641 PLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIH 700
+ + EA A PFDYG GHVNP A PGL++D G DY+ FLC+ G +
Sbjct: 590 EMVS------EAAPYNDANPFDYGGGHVNPNRAAHPGLVYDMGVSDYMRFLCSM-GYNTS 642
Query: 701 EIRNYTNQP--CNYSMGHPYNFNTPSITVAHLVKTQVVTRTVTNVAEE-ETYSMSARMQP 757
I + T Q C ++ N N PSIT+ L V+RTVTNV Y P
Sbjct: 643 AISSMTQQQTTCQHTPKSQLNLNVPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPP 702
Query: 758 AIAIEVNPPAMTLKPGASR-KFTVTLTVR-SVTGTYSFGEICMKGSRGHKVNIPVIAQ 813
+ + V+P +T + F VT + V G Y+FG + + H V IP++ +
Sbjct: 703 GVDVTVSPSLLTFNSTVRKLPFKVTFQAKLKVKGRYTFGSLTWEDGT-HTVRIPLVVR 759
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 817 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-100 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 2e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-26 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 9e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 3e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-17 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-17 | |
| pfam06280 | 110 | pfam06280, DUF1034, Fn3-like domain (DUF1034) | 1e-16 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 8e-16 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 5e-15 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 7e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-14 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 1e-13 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-13 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 7e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 9e-13 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-12 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 3e-12 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 9e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 6e-11 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 8e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-10 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 6e-09 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 8e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-08 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 2e-07 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 5e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 6e-07 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 6e-07 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 3e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 3e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 4e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 4e-06 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 8e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 2e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-05 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 5e-05 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 8e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 9e-05 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 1e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 2e-04 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-04 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 2e-04 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 4e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 6e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 0.001 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 0.001 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 0.002 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 312 bits (803), Expect = e-100
Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 7/236 (2%)
Query: 130 TTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRG 189
TT +P+FLGLP + G AGE I+IG +D+GI+P HPSF PY + G
Sbjct: 5 TTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPH--TWPG 62
Query: 190 KCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNN 249
C D CN K+IGA++F++ A FN ++ SP D DGHG+HTA+ AAGN
Sbjct: 63 DCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNV 122
Query: 250 GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVG 309
+ + G FG ASG+APRARIAVYK + G F +D++AAIDQA+ DGVD++S S+G
Sbjct: 123 VVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIG 182
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAA 365
SP + +P + L AV+AG+FVA +AGN GP T+ + +PW+TTVAA
Sbjct: 183 GGSPD-----PYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAA 233
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-33
Identities = 49/70 (70%), Positives = 55/70 (78%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621
LKPDI APG I AAW+P G D + GE FA ISGTSMA+PH+AG+AAL+K HP WSP
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSP 295
Query: 622 AAIKSALMTT 631
AAIKSALMTT
Sbjct: 296 AAIKSALMTT 305
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 68/216 (31%), Positives = 96/216 (44%), Gaps = 36/216 (16%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G+ + + +D+GI HP G P P K +G + D
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLG----GPGFPNDKVKGGYDFVDD----------------D 40
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+ R + + AS D GHG+H A I AGN G G G+AP+A +
Sbjct: 41 YDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKADLY 92
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV 333
YK L G ++AAI+QAV DG+D+++LS+G + P + + AV
Sbjct: 93 AYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDD------PDAIAINNAV 146
Query: 334 KAGVFVAQAAGNGGPFPKTLVSY--SPWITTVAAAI 367
KAGV V AAGN GP P T+ S +P TV A+
Sbjct: 147 KAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 9e-24
Identities = 58/225 (25%), Positives = 85/225 (37%), Gaps = 56/225 (24%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G+ I + +D+GI HP F V G+
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGR----------------------- 37
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+P D +GHG+H A I AG+ G G+ G+AP A +
Sbjct: 38 ---------------TTPYDDNGHGTHVAGIIAGS-GRASN------GKYKGVAPGANLV 75
Query: 274 VYKALYRLFGGFVADVVAAIDQAV----HDGVDILSLSVGPNSPPATTKTTFLNPFDVTL 329
K L G +D++A ID V + +++LS+G P+ +P +
Sbjct: 76 GVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPS----YGEDPLCQAV 131
Query: 330 LAAVKAGVFVAQAAGNGGPFPKTLVS--YSPWITTVAAAIDDRRY 372
AG+ V AAGN GP P T+ S SP + TV A+DD
Sbjct: 132 ERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITV-GAVDDNGP 175
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-23
Identities = 53/136 (38%), Positives = 66/136 (48%), Gaps = 29/136 (21%)
Query: 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISG 597
A V S+RGP D +KPDI+APG I + +GT G+A +SG
Sbjct: 189 ADTVGPSSSRGPPTSDS------AIKPDIVAPGVDIMSTAPGSGT--------GYARMSG 234
Query: 598 TSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVT 657
TSMAAPH+AG AAL+KQ HP WSPA IK+ALM T L + V
Sbjct: 235 TSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------------GVV 279
Query: 658 ATPFDYGSGHVNPRAA 673
G+G V+ A
Sbjct: 280 YPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-17
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
++ FS+RGP D + KPD++APG I + SP G A VG G+ +SGTSM
Sbjct: 180 ISYFSSRGPT------GDGRI-KPDVVAPGENIVSCRSPGGNPGAG-VGSGYFEMSGTSM 231
Query: 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTT 633
A PH++G AL+ Q +P +P +K L T T
Sbjct: 232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-17
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+A FS G + KPDI+APG I ++ G+ SGTS
Sbjct: 176 TIADFSNYGGPVDGI--------KPDIVAPGGNILSSGPGGDLG-------GYDSHSGTS 220
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRAS 639
MAAP +AG AAL+ +P +P +++ L+TT T L
Sbjct: 221 MAAPLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMG 260
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 60/237 (25%), Positives = 84/237 (35%), Gaps = 54/237 (22%)
Query: 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAA 216
+ + +D+G+ P HP G
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGN-------------------------------- 28
Query: 217 IAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYK 276
+ P DG+GHG+H A I A + G G+AP A++ K
Sbjct: 29 ---DDDDNENGPTDPDDGNGHGTHVAGIIAASAN---------NGGGVGVAPGAKLIPVK 76
Query: 277 ALYRLFGGFVADVVAAIDQAVHD-GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA 335
L G +D+ AAID A D G D+++LS+G P ++ + A K
Sbjct: 77 VLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSS-----ALSEAIDYALAKL 131
Query: 336 GVFVAQAAGNGGPFPKTLVSY---SPWITTVAA-AIDDRRYKNHLNLGNGKILAGIG 388
GV V AAGN GP T + Y SP + V A D N G G +A G
Sbjct: 132 GVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIAAPG 188
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|218971 pfam06280, DUF1034, Fn3-like domain (DUF1034) | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 1e-16
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 700 HEIRNYTNQPCNYSMG---HPYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQ 756
+++ N + H + TV+H V V + E Y + A
Sbjct: 1 VSLKDIGNTF---TFTVTLHNLGNKAVTYTVSH----LGVLTDVVD--TTEGYLILASAD 51
Query: 757 PAIAIEVNPPAMTLKPGASRKFTVTLTVRSV---TGTYSFGEICMKGSRGH-KVNIPVI 811
P A+ +PP +T+ G S TVTLT+ S G + G + KGS G +++P +
Sbjct: 52 PGAALTFSPPTVTVPAGGSATVTVTLTLPSGFDANGYFLEGFVTFKGSDGSPSLSVPYM 110
|
This family consists of several domains of unknown function which are present in several bacterial and plant peptidases. This domain is found in conjunction with pfam00082, pfam02225 and is often found with pfam00746. This domain has a structure similar to an Fn3 domain. Length = 110 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 8e-16
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 537 SAPQVALFSARGPNIKDFSFQDA----DLLKPDILAPGSLIWAAWSPNGTDEANFVGEGF 592
+ A FS+ G + + KPD+ APG +++A +
Sbjct: 160 RDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQ------GANGDGQY 213
Query: 593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTT 632
+SGTSMAAPH+AG+AAL+ HP SP IK AL T
Sbjct: 214 TRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-15
Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNIL 437
LGNGK + G L P L V ++ AS C L+ + V+G I+
Sbjct: 4 LGNGKTIVGQSLYP-------GNLKTYPLVYKSANSGDVDASLCLPGS-LDPSKVKGKIV 55
Query: 438 LCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTK 497
LC G S + K+ G AG +LA + +P + + D
Sbjct: 56 LC-----DRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVAD-AHVLPAVHV-DYED 108
Query: 498 SMDLVDYYNTSTTRDWT 514
++ Y N+++ T
Sbjct: 109 GTAILSYINSTSNPTAT 125
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 23/92 (25%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
A FS+ GP + ++ APG I + + N +A +SGTS
Sbjct: 161 NRASFSSTGPEV-------------ELAAPGVDILSTYPNND----------YAYLSGTS 197
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631
MA PH+AG+AALV K P + A ++ AL T
Sbjct: 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 74.5 bits (184), Expect = 7e-15
Identities = 48/194 (24%), Positives = 73/194 (37%), Gaps = 59/194 (30%)
Query: 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEA 215
+ + +D+GI HP I+G +F
Sbjct: 1 GVKVAVIDTGIDSSHPDL-----------------------------KLNIVGGANFTGD 31
Query: 216 AIAARAFNPAVDFASPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAV 274
D DG+GHG+H A IAA +NG+ V G+AP A +
Sbjct: 32 -----------DNNDYQDGNGHGTHVAGIIAALDNGVGV----------VGVAPEADLYA 70
Query: 275 YKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK 334
K L G +D++A I+ A+ +G+DI+++S+G S + A
Sbjct: 71 VKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAI--------KKAYA 122
Query: 335 AGVFVAQAAGNGGP 348
AG+ V AAGN G
Sbjct: 123 AGILVVAAAGNSGN 136
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-14
Identities = 59/203 (29%), Positives = 84/203 (41%), Gaps = 51/203 (25%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G+ + + VD+GI HP+ G +GP K G + D
Sbjct: 12 GKGVKVAVVDTGIDYTHPALGGC----FGPGCKVAGGYDFVGD----------------- 50
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
NP V P+D GHG+H A I A N +G +G+AP A +
Sbjct: 51 ----DYDGTNPPVPDDDPMDCQGHGTHVAGIIAANPN--------AYG-FTGVAPEATLG 97
Query: 274 VYKALYRLFG--GFVAD--VVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTL 329
YR+FG G + ++AA +A DG D+++ S+G S + +P+ V
Sbjct: 98 A----YRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSE------DPWAVVA 147
Query: 330 LAAVKAGVFVAQAAGN---GGPF 349
V AGV V AAGN GPF
Sbjct: 148 SRIVDAGVVVTIAAGNDGERGPF 170
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 31/151 (20%)
Query: 227 DFAS----PLDGDGHGSHTAAI--AAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYR 280
+F + P+D +GHG+H A I A GNNGI + +G+A +I K L
Sbjct: 51 NFVNNDNDPMDDNGHGTHVAGIIGAVGNNGIGI----------AGVAWNVKIMPLKFLGA 100
Query: 281 LFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGV-FV 339
G +D + AID AV G I++ S G P + + A+ AG+ FV
Sbjct: 101 DGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRD--------AIARAIDAGILFV 152
Query: 340 AQAAGNGG----PFPKTLVSY-SPWITTVAA 365
A AAGN G P SY I +VAA
Sbjct: 153 A-AAGNDGTNNDKTPTYPASYDLDNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 47/227 (20%), Positives = 77/227 (33%), Gaps = 53/227 (23%)
Query: 158 VIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAI 217
+G +D+GI +HP S Y VD D
Sbjct: 1 TVGVLDTGIDVNHPDL-SGRYIGLAYRNGYDF---VDND--------------------- 35
Query: 218 AARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKA 277
D D +GHG+H A I A + G+AP A++ K
Sbjct: 36 --------PDPTPDDDNNGHGTHVAGIIAAGDNNGSGGV--------GVAPNAKLESVK- 78
Query: 278 LYRLFGGFVADVVAAIDQAV--HDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA 335
+ GG +++ AI+ A + + ++++S+GP P + ++ + A
Sbjct: 79 VLPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDGPP--SSWSSAIDELAVNGADNK 136
Query: 336 GVFVAQAAGNGGPFPKTLVSYSP-----WITTVAAAIDDRR--YKNH 375
G AAGNGG + P IT A + + N+
Sbjct: 137 GSLFVVAAGNGGDYADNNPVSDPASANNIITVGAVTENGTIADFSNY 183
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
Query: 563 KPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
DI APG I ++ + G G+A +SGTSMAAP +AG+AAL+ +P +PA
Sbjct: 181 GVDIAAPGGDILSSPTTGG--------GGYATLSGTSMAAPIVAGVAALLLSANPDLTPA 232
Query: 623 AIKSALMTT 631
+K+AL++T
Sbjct: 233 QVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 7e-13
Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 19/115 (16%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ-KHPYWS 620
LKPD+ APG I + + P G G+A++SGTSMA P++AG AAL+ Q +H S
Sbjct: 202 LKPDVAAPGGNILSTY-PLA-------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLS 253
Query: 621 PAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
PA ++ L +T ++PL + A G+G VN AL
Sbjct: 254 PAELRDLLAST-------AKPLPWSDGTSAL---PDLAPVAQQGAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-13
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 64 SYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERD 123
S A E LYSYKH NGFA +T ++AE L++ P V+ VE D
Sbjct: 11 SKAAVFSSHKSWHASSKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPD 70
Query: 124 WKVR 127
V
Sbjct: 71 QVVE 74
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG I + G + +SGTSMA PH+AG AAL+ +P + A I
Sbjct: 201 DLAAPGVDILSTSPGGG----------YGYMSGTSMATPHVAGAAALLLSLNPNLTAAQI 250
Query: 625 KSALMTTTT 633
K A++++
Sbjct: 251 KDAILSSAD 259
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-12
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 38/225 (16%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKR----SFCNGKIIGA 209
GE +V+ +DSG+ P H +F D KY + E + N K+ A
Sbjct: 10 GEGMVVAVIDSGVDPTHDAFRL--DDD--SKAKYSEEFEAKKKKAGIGYGKYYNEKVPFA 65
Query: 210 QHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPR 269
++A+ N D DG HG H A I AGN G+AP
Sbjct: 66 YNYADN-------ND--DILDEDDGSSHGMHVAGIVAGNGDEE-----DNGEGIKGVAPE 111
Query: 270 ARIAVYKALYRLFGGFVAD--VVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDV 327
A++ K GG D AI+ AV G D++++S+G + F++ D
Sbjct: 112 AQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG-------STAGFVDLDDP 164
Query: 328 TLLA---AVKAGVFVAQAAGN----GGPFPKTLVSYSPWITTVAA 365
A A +AGV V AAGN G K L + +P TV +
Sbjct: 165 EQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGS 209
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 45/151 (29%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 492 ITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551
T + +T T G + T+ + + + Q++ FS+ GP
Sbjct: 189 SGSGTSKPLATNNPDTGTV----GSPATADDVLTVASANKKVPNPNGGQMSGFSSWGPT- 243
Query: 552 KDFSFQDADL-LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610
DL LKPDI APG I++ + T + +SGTSMA+PH+AG +A
Sbjct: 244 -------PDLDLKPDITAPGGNIYST-VNDNT---------YGYMSGTSMASPHVAGASA 286
Query: 611 LVKQ----KHPYWSPA----AIKSALMTTTT 633
LVKQ K+P S +K+ LM T T
Sbjct: 287 LVKQRLKEKYPKLSGEELVDLVKNLLMNTAT 317
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 53/202 (26%), Positives = 70/202 (34%), Gaps = 54/202 (26%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G + +G +DSGI HP F G++ A ++
Sbjct: 2 GAGVKVGVIDSGIDLSHPEF-----------------------------AGRVSEASYYV 32
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+AS DGD HG+H A + A MHG +AP A +
Sbjct: 33 --------AVNDAGYASNGDGDSHGTHVAGVIAAAR-DGGGMHG--------VAPDATLY 75
Query: 274 VYKALYRLFGGF-VADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFL-------NPF 325
+A F AD+ AA D GV I++ S G N T TT+ N
Sbjct: 76 SARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTL 135
Query: 326 DVTLLAAVKAGVFVAQAAGNGG 347
L A AG AAGN G
Sbjct: 136 LAALARAANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-12
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI APG I +AW + T A +SGTSMAAPH+AG+AA + P SPA +
Sbjct: 194 DIFAPGVDILSAWIGSDT--------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245
Query: 625 KSALMTTTTK 634
K+ L+ TK
Sbjct: 246 KARLLNLATK 255
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 9e-12
Identities = 56/235 (23%), Positives = 81/235 (34%), Gaps = 70/235 (29%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G + + VD+G+ P HP K F G
Sbjct: 27 GSGVTVAVVDTGVDPTHPDLL-----------------------KVKFVLG--------- 54
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAPRAR 271
++ + + +D +GHG+H A I A NNG V +G+AP+A+
Sbjct: 55 --------YDFVDNDSDAMDDNGHGTHVAGIIAAATNNGTGV----------AGVAPKAK 96
Query: 272 IAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLA 331
I K L G +AD+ I A G +++LS+G T L
Sbjct: 97 IMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG-------------GGLGSTALQ 143
Query: 332 -----AVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381
A GV V AAGN G + + P VAA D + + N G
Sbjct: 144 EAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDKRASFSNYGKW 198
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 23/102 (22%)
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
+A+FS RGP +KPDI APG I A SP G G+ SGTS+
Sbjct: 359 IAIFSGRGPTRDG-------RIKPDIAAPGVNILTA-SPGG---------GYTTRSGTSV 401
Query: 601 AAPHIAGIAAL------VKQKHPYWSPAAIKSALMTTTTKLD 636
AA +AG AL V+ PY IK+ L+ +
Sbjct: 402 AAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRP 443
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
++ VA FS+RGP +KPD++APG+ I +A S G + + S
Sbjct: 197 NSDTVASFSSRGPT-------YDGRIKPDLVAPGTGILSARS-GGGGIGDTSDSAYTSKS 248
Query: 597 GTSMAAPHIAGIAALVKQ----------KHPYWSPAAIKSALMTTT 632
GTSMA P +AG AAL++Q +P S A +K+ L+ +
Sbjct: 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-11
Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 17/78 (21%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+A FS+RGP+ +KPDI APG I +A P G G+ SGTS
Sbjct: 186 VLADFSSRGPSTYG-------RIKPDISAPGVNIRSAV-PGG---------GYGSSSGTS 228
Query: 600 MAAPHIAGIAALVKQKHP 617
MAAPH+AG+AAL+ +P
Sbjct: 229 MAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 566 ILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIK 625
+ APG I++ G G+ +SGTS AAPH++G AAL+ QK P+ + ++
Sbjct: 208 LAAPGENIYSTDPDGGN--------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVR 259
Query: 626 SALMTTTT 633
L+TT T
Sbjct: 260 QTLLTTAT 267
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG I + +A +SGTSMA PH+AG+AAL+ + P S + +
Sbjct: 200 DVSAPGGGILSTTPDGD----------YAYMSGTSMATPHVAGVAALLYSQGP-LSASEV 248
Query: 625 KSALMTTTTKL 635
+ AL T +
Sbjct: 249 RDALKKTADDI 259
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 28/111 (25%)
Query: 564 PDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623
D+ APG I + SP G G A SGTS AAP ++G AALV+ + P + A
Sbjct: 200 VDLAAPGENIVSL-SPGGD--------GLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQ 250
Query: 624 IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
++ + T D +R + G G V+P AAL
Sbjct: 251 VRRRIEATA---DHPARGGRD----------------DYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 563 KPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
KPD+ AP D G+G GTS AAPH AG+AALV +P +PA
Sbjct: 190 KPDVTAPDG----VNGTVDGD-----GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPA 240
Query: 623 AIKSALMTTTTKLD 636
I+ AL +T +
Sbjct: 241 DIRDALRSTALDMG 254
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPG----SLIWAAWSPN-GTDEANFVGEGFAL 594
Q A +S GP + D+ APG S + P+ T + G +
Sbjct: 202 QRASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGF 248
Query: 595 ISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631
+ GTSMAAPH+AG+AAL+K +P +PA I+S L +T
Sbjct: 249 LQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 564 PDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623
DI APG I +A G G+ +SGTSMA PH+AG+AAL + P A
Sbjct: 213 VDIAAPGVDIVSAA----------PGGGYRSMSGTSMATPHVAGVAALWAE----ALPKA 258
Query: 624 IKSALMTTTTKLDRASRPLQAQ 645
AL A+R Q
Sbjct: 259 GGRALAALLQARLTAARTTQFA 280
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 44/198 (22%), Positives = 62/198 (31%), Gaps = 50/198 (25%)
Query: 157 IVIGFVDSGIYPHHPSFG---SHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
+ + +DSGI P HP S ++ P Y GK +
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDI------------ 49
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+D GHG+ A A N G G+AP I
Sbjct: 50 ------------------VDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIV 79
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPN----SPPATTKTTFLNPFDVTL 329
Y+ + ++ AI A DGVD+++LS+G +
Sbjct: 80 SYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAIN 139
Query: 330 LAAVKAGVFVAQAAGNGG 347
A K G V AAGN G
Sbjct: 140 YAKSK-GSIVVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 5e-07
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 30/127 (23%)
Query: 225 AVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARI-AVYKALYRLFG 283
V D +GHG+H A G+ G+A +A + AV K L
Sbjct: 53 FVGGDPDSDCNGHGTHVAGTVG--------------GKTYGVAKKANLVAV-KVLDCNGS 97
Query: 284 GFVADVVAAIDQAVHDGVD-----ILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVF 338
G ++ ++A ++ +D + ++S+G + A D + AAV AGV
Sbjct: 98 GTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTA---------LDAAVAAAVNAGVV 148
Query: 339 VAQAAGN 345
V AAGN
Sbjct: 149 VVVAAGN 155
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 565 DILAPGSL-IWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617
DI APG I + D G + +SGTSMAAPH++G+AALV K P
Sbjct: 209 DIAAPGVGTILSTVPKLDGD----GGGNYEYLSGTSMAAPHVSGVAALVLSKFP 258
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 19/90 (21%)
Query: 540 QVALFSARGPNIKDFSFQDAD-LLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGT 598
A FS+ GP AD LKPD++A G+ I + +G +GT
Sbjct: 185 NKASFSSIGP--------TADGRLKPDVMALGTGI-YVINGDGN---------ITYANGT 226
Query: 599 SMAAPHIAGIAALVKQKHPYWSPAAIKSAL 628
S + P IAG+ A + Q HP W+ IK A+
Sbjct: 227 SFSCPLIAGLIACLWQAHPNWTNLQIKEAI 256
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 54/212 (25%)
Query: 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAA 216
+V+ +D+G+ +HP GK ++ P
Sbjct: 1 VVVAIIDTGVDLNHPDL--------------SGKPKLVP--------------------- 25
Query: 217 IAARAFNPAVDFASPLDGDGHGSHTAAIAA--GNNGIPVRMHGHEFGRASGMAPRARIAV 274
+N + D DGHG+ A +AA GNNG+ +G+AP A++
Sbjct: 26 ----GWNFVSNNDPTSDIDGHGTACAGVAAAVGNNGL----------GVAGVAPGAKLMP 71
Query: 275 YKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK 334
+ L + +D+ AI A +G D++S S G + + + N T K
Sbjct: 72 VRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNA--ATYGRNGK 129
Query: 335 AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366
GV + AAGN G + + +P + VAA
Sbjct: 130 GGVVLF-AAGNSGRSVSSGYAANPSVIAVAAT 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600
V +S+RGP+I A KPD+ A G+ WA + A E F L GTSM
Sbjct: 221 VVSWSSRGPSI-------AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSM 273
Query: 601 AAPHIAGIAALV----KQK--HPYWSPAAIKSALMTT 631
A P AG AALV K+K + P +++ LM+T
Sbjct: 274 ATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMST 310
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 50/165 (30%), Positives = 63/165 (38%), Gaps = 33/165 (20%)
Query: 224 PAVDFASPLDG----DGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALY 279
P DF DG DGHG+ A I AG E SG+AP ARI +
Sbjct: 36 PGGDFVGSGDGTDDCDGHGTLVAGIIAG--------RPGEGDGFSGVAPDARILPIRQTS 87
Query: 280 RLF--------GGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLA 331
F G + + AI +A G D++++S+ P + D L A
Sbjct: 88 AAFEPDEGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSG------ADDPELGA 141
Query: 332 AV-----KAGVFVAQAAGNGGPFPKTLVSYSPWITTV--AAAIDD 369
AV K V VA A GG KT V Y W V +ID
Sbjct: 142 AVRYALDKGVVVVAAAGNTGGDGQKTTVVYPAWYPGVLAVGSIDR 186
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 4e-06
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 14/78 (17%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAAL----VKQKHP 617
+KPDI+ GS ++ G+ + G +SGTS+A+P +AG AL V +K
Sbjct: 186 VKPDIVTYGSGVY------GSK----LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRD 235
Query: 618 YWSPAAIKSALMTTTTKL 635
+PA++K AL+ + T+L
Sbjct: 236 LINPASMKQALIESATRL 253
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVV 290
D GHG+H + G G G G+AP A + K L GG ++ ++
Sbjct: 39 VFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDG-GGSLSQII 88
Query: 291 AAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGP 348
A ++ AV D++S+S+G L L A +FV +AGN G
Sbjct: 89 AGMEWAVEKDADVVSMSLGGTYYS----EDPLEEAVEALSNQTGA-LFVV-SAGNEGH 140
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 61/228 (26%), Positives = 82/228 (35%), Gaps = 64/228 (28%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G IV+ +D+G+ HP+ KYRG D ++
Sbjct: 1 GTGIVVANIDTGVDWTHPAL----------KNKYRGWGGGSADHDYNW------------ 38
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRAR-I 272
F+P + P D +GHG+HT GN+G G+ G+AP AR I
Sbjct: 39 --------FDPVGNTPLPYDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWI 81
Query: 273 AVYKALYRLFGGFVADVVAAID--QAVHD----------GVDILSLSVGPNSPPATTKTT 320
A +AL R GG AD + A D D+++ S G S
Sbjct: 82 AC-RALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQP 139
Query: 321 FLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
V A AG+F AAGN GP TL + P V A
Sbjct: 140 A-----VAAWRA--AGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGA 180
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 49/186 (26%), Positives = 68/186 (36%), Gaps = 39/186 (20%)
Query: 207 IGAQH--FAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRAS 264
I H FA I ++F V DG GHG+H A G + R
Sbjct: 19 IDLTHPAFAGRDITTKSF---VGGEDVQDGHGHGTHCAGTIFGRDVPGPRY--------- 66
Query: 265 GMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTF--- 321
G+A A IA+ + GG ++A I AV +G D++S+S+G + P +
Sbjct: 67 GVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126
Query: 322 ------------LNPFD-----VTLLAAVKAGVFVAQAAGN-----GGPFPKTLVSYSPW 359
FD V AA+ G + AAGN G P + P
Sbjct: 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPS 186
Query: 360 ITTVAA 365
VAA
Sbjct: 187 AMGVAA 192
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 14/90 (15%)
Query: 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMA 601
A +S G + D++APG IW + G+ ++ G G+ SGTS A
Sbjct: 167 ASYSNYGNYV-------------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFA 212
Query: 602 APHIAGIAALVKQKHPYWSPAAIKSALMTT 631
+P AG+AAL+ +P +PA ++ L +T
Sbjct: 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 19/95 (20%)
Query: 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPH 604
S+RGP D L I APG I N+ +G L++GTSM++P+
Sbjct: 333 SSRGPTA------DGAL-GVSISAPGGAI--------ASVPNWTLQGSQLMNGTSMSSPN 377
Query: 605 IAGIAALV----KQKHPYWSPAAIKSALMTTTTKL 635
G AL+ K + ++P +++ AL T KL
Sbjct: 378 ACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 569 PGSLI--WAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626
PGS + A P+GT +G+ + SGTS AAP +AG+ AL+ Q +P SP +S
Sbjct: 221 PGSQLDRSCAAFPDGTP----PNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARS 276
Query: 627 ALMTT 631
L T
Sbjct: 277 LLNKT 281
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 8e-05
Identities = 46/164 (28%), Positives = 61/164 (37%), Gaps = 50/164 (30%)
Query: 154 GEDIVIGFVDSGIYPHHPSF----GS-------HHTDPYGPVPKYRGKCEVDPDTKRSFC 202
G+ +++G +D+GI HP F G+ T P GP P
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP----------------- 45
Query: 203 NGKIIGAQHFAEAAIAA--RAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEF 260
G G + E I A + NP S D +GHG+H A IAAGN G
Sbjct: 46 -GGYYGGGEYTEEIINAALASDNPYDIVPSR-DENGHGTHVAGIAAGN--------GDNN 95
Query: 261 GRASGMAPRARIAV-----YKALYRLFGGFV-----ADVVAAID 294
G+AP A + V K R F V D++ AI
Sbjct: 96 PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIK 139
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 40/210 (19%), Positives = 62/210 (29%), Gaps = 57/210 (27%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G+ ++G D+G+ +H F DP + + KI+ +
Sbjct: 6 GKGQIVGVADTGLDTNHCFF----YDPNFN--------KTNLFH------RKIVRYDSLS 47
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+ + D DGHG+H A I AG G+AP+A++
Sbjct: 48 D---------------TKDDVDGHGTHVAGIIAGKGNDSS-----SISLYKGVAPKAKLY 87
Query: 274 VY-KALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTT-------FLNPF 325
D+ G I S S G T + NP
Sbjct: 88 FQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPD 147
Query: 326 DVTLLAAVKAGVFVAQAAGNGGPFPKTLVS 355
+L VF +AGN G +
Sbjct: 148 ---ILF-----VF---SAGNDGNDGSNTIG 166
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 10/67 (14%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D APG +W A G +SGTS AAP + AL+ Q P A
Sbjct: 168 DFAAPGVDVWVAAPGGGYR----------YVSGTSFAAPFVTAALALLLQASPLAPDDAR 217
Query: 625 KSALMTT 631
T
Sbjct: 218 ARLAATA 224
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 1e-04
Identities = 42/200 (21%), Positives = 62/200 (31%), Gaps = 18/200 (9%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
+ VA FS G DI APG I + + N G + +S
Sbjct: 314 LSDTVASFSNDGSPTG-----------VDIAAPGVNILSLSAVNTLPGD---GADYVTLS 359
Query: 597 GTSMAAPHIAGIAALVKQKHP-YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
GTSMAAPH++G+AALV +P +PA +++ ++TT A
Sbjct: 360 GTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA---GLTPLSGVDNLVGGGLANLD 416
Query: 656 VTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMG 715
AT G+ N + + L T + T
Sbjct: 417 AAATDVAGGTLPANGTGSSQGAVEAPGTLALLTPALGGTVPAAVAVAGTVTVGLGTAGTI 476
Query: 716 HPYNFNTPSITVAHLVKTQV 735
S +A
Sbjct: 477 ALAALGGASAALARREARGD 496
|
Length = 508 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 47/205 (22%), Positives = 74/205 (36%), Gaps = 41/205 (20%)
Query: 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEA 215
+V+ +D+G+ HHP Y + DP +G+
Sbjct: 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFIS--------DPAIANDG-DGRDSDPTD-PGD 50
Query: 216 AIAARAFNPAVDFASPLDGDG-HGSHTAAI--AAGNNGIPVRMHGHEFGRASGMAPRARI 272
+ P S + HG+H A A NNG+ V +G+A ARI
Sbjct: 51 WVTGDDVPPGGFCGSGVSPSSWHGTHVAGTIAAVTNNGVGV----------AGVAWGARI 100
Query: 273 AVYKALYRLFGGFVADVVAAIDQAV---HDGV-------DILSLSVGPNSPPATTKTTFL 322
+ L + GG ++D+V + A GV +++LS+G + + T +
Sbjct: 101 LPVRVLGKC-GGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGACSATMQNAI 159
Query: 323 NPFDVTLLAAVKAGVFVAQAAGNGG 347
N GV V AAGN G
Sbjct: 160 N-------DVRARGVLVVVAAGNEG 177
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.9 bits (105), Expect = 2e-04
Identities = 46/230 (20%), Positives = 73/230 (31%), Gaps = 58/230 (25%)
Query: 149 GFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIG 208
G G+ + + +D+G+ HP
Sbjct: 136 GAGLTGKGVTVAVIDTGVDASHPDLAG--------------------------------- 162
Query: 209 AQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAP 268
+A+A F LD +GHG+H A A +G+AP
Sbjct: 163 ------SAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGA-------GVAGVAP 209
Query: 269 RARIAVYKALYRLFG-GFVADVVAAIDQAV--HDGVDILSLSVGPNSPPATTKTTFLNPF 325
A++ + K L G G ++DV I+ A D+++LS+G + + +
Sbjct: 210 GAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPAL---GD 266
Query: 326 DVTLLAAVKAGVFVAQAAGNGGP-----FPKTLVSYSPWITTVAAAIDDR 370
+ A V VA AAGN G SY A+D
Sbjct: 267 ALAAAANAGGVVIVA-AAGNDGSNASGGDLAYPASYPAPNVIAVGALDLS 315
|
Length = 508 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 2e-04
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 392 ATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTAS 451
+ G T LV + PE L + V+G I+L G S
Sbjct: 1 SPGGTGTGPLVYVG---------NGDDAGGCCPEDLADSDVKGKIVLV------RRGGCS 45
Query: 452 IKKVSETAKSLGAAGFVLA--VENVSPGTKFDPVPVGIPGILIT 493
+ +E A+ GAAG ++ GT DP V IP + I+
Sbjct: 46 FVEKAENAQRAGAAGVIIYNNDTGGLGGTVGDPSDVTIPVVFIS 89
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDE-----ANFVGEGFAL 594
++ FS G + D + D L D W NG G+A
Sbjct: 202 NLSSFSNYGNSRIDLAAPGGDFLLLDQYGKE-----KWVNNGLMTKEQILTTAPEGGYAY 256
Query: 595 ISGTSMAAPHIAGIAALVKQKHP 617
+ GTS+AAP ++G AL+ K+P
Sbjct: 257 MYGTSLAAPKVSGALALIIDKNP 279
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG I++ N + SGTSMAAP ++G+AAL+ +P + +
Sbjct: 233 DVFAPGERIYSTTPDNEYETD----------SGTSMAAPVVSGVAALIWSYYPNLTAKEV 282
Query: 625 KSALMTTTT 633
K ++ +
Sbjct: 283 KQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 8/118 (6%)
Query: 232 LDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVV 290
G GHG+H A IAA NN + G G+AP +I + + V
Sbjct: 58 SVGGGHGTHVAGTIAAVNNNGGG-VGGIAGA--GGVAPGVKIMSIQIFAGRYYVGDDAVA 114
Query: 291 AAIDQAVHDGVDILSLSVGPNSP---PATTKTTFLNPFDVTLLAAVKAGVFVAQAAGN 345
AAI A +G IL S G K F + + + G+ V +AGN
Sbjct: 115 AAIVYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVF-SAGN 171
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEF-GRASGMAPRARIAVYKALYRLFGGFVA---- 287
D HG+ A++AAG + ++G+ G+AP A+IA KAL FG +
Sbjct: 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKAL--WFGDVIYAWLW 111
Query: 288 ----DVVAAIDQAVHDG---VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFV 339
D V ++ G VD++S S G ++ T L+ + + A V GV +
Sbjct: 112 TAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPI 171
Query: 340 AQAAGNGGPFPKTLVS--YSPWITTVAAAID 368
AAGNGGP T+ + + +V AA +
Sbjct: 172 VSAAGNGGPGYGTITAPGAASLAISVGAATN 202
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 48/207 (23%), Positives = 71/207 (34%), Gaps = 76/207 (36%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G + + VD+G Y H F S Y+ +
Sbjct: 20 GRGVRVAMVDTGFYAHPF-FESR---------GYQVR----------------------- 46
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAA----IAAGNNGIPVRMHGHEFGRASGMAPR 269
+A A +PA D +GHG+ +A IA G I V++ G +
Sbjct: 47 -VVLAPGATDPA------CDENGHGTGESANLFAIAPGAQFIGVKLGGPD---------- 89
Query: 270 ARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPN-SPPATTKTTFLNPFDVT 328
+ + V A +A+ DI+S S G + P T+ + L
Sbjct: 90 ----------------LVNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKA 133
Query: 329 LLA----AVKAGVFVAQAAGNGG-PFP 350
L A AV G+ V +AGNGG FP
Sbjct: 134 LAATLQDAVARGIVVVFSAGNGGWSFP 160
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 563 KPDILAPG--------SLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ 614
KPD++A G T ++ G GF + GTS AAP A +AA +
Sbjct: 213 KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFA 272
Query: 615 KHPYWSPAAIKSALM 629
+ P SP I+ AL+
Sbjct: 273 ELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 817 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.8 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 99.27 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.78 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.69 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.55 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.21 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.02 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.99 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 97.97 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.91 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.84 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 97.75 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.73 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.72 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.68 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.65 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.63 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.56 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.54 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.53 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.49 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.42 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.1 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.28 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.71 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 94.89 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.88 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 93.88 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 93.38 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 93.19 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.09 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 93.06 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.26 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 90.39 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 90.19 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 90.1 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 89.17 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.52 | |
| PF05506 | 89 | DUF756: Domain of unknown function (DUF756); Inter | 83.83 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 82.93 | |
| smart00635 | 81 | BID_2 Bacterial Ig-like domain 2. | 82.24 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.71 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 81.3 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=447.18 Aligned_cols=306 Identities=52% Similarity=0.849 Sum_probs=252.2
Q ss_pred eccccCCCCcccCCCCCCCCC-CCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCC
Q 003469 126 VRRLTTHTPEFLGLPTGVWPT-GGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNG 204 (817)
Q Consensus 126 ~~~~~~~s~~~~g~~~~~w~~-~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 204 (817)
++++++.++.+++++ ..|.. .+..+++|+||+|||||||||++||+|.+....++ ...|.+.|..+..+....+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPY--PHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCC--CCCCCCcccCCCCcCccCcCC
Confidence 356788899999976 67776 45568999999999999999999999998643332 127999999888777778999
Q ss_pred ceeeeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC
Q 003469 205 KIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG 284 (817)
Q Consensus 205 ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~ 284 (817)
|+++.++|.++.......+...+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++....+
T Consensus 78 ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 78 KLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred eEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 99999999876443322233444567789999999999999998765544455556678999999999999999986678
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEe
Q 003469 285 FVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVA 364 (817)
Q Consensus 285 ~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVg 364 (817)
..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.++..||+++||
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP-----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC-----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 88999999999999999999999998653 1245678888899999999999999999987777888889999998
Q ss_pred eeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccc
Q 003469 365 AAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFN 444 (817)
Q Consensus 365 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~ 444 (817)
|+
T Consensus 233 a~------------------------------------------------------------------------------ 234 (307)
T cd04852 233 AS------------------------------------------------------------------------------ 234 (307)
T ss_pred ec------------------------------------------------------------------------------
Confidence 73
Q ss_pred cccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeee
Q 003469 445 FVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTG 524 (817)
Q Consensus 445 ~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 524 (817)
T Consensus 235 -------------------------------------------------------------------------------- 234 (307)
T cd04852 235 -------------------------------------------------------------------------------- 234 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHH
Q 003469 525 TIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPH 604 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 604 (817)
.+||||+|||.+|++++..............|..++|||||||+
T Consensus 235 ------------------------------------~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~ 278 (307)
T cd04852 235 ------------------------------------TLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPH 278 (307)
T ss_pred ------------------------------------cCccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHH
Confidence 13569999999999988643222222345689999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003469 605 IAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 605 VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
|||++|||+|++|+|+|.|||++|++||+
T Consensus 279 vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 279 VAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999995
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=450.13 Aligned_cols=430 Identities=23% Similarity=0.267 Sum_probs=242.9
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCC-CCCcccccCCCCCCccCCCceeeeeehhHHHH-hhccCCCCCCCC
Q 003469 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVP-KYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAI-AARAFNPAVDFA 229 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~-~~~~~~~~~~~~ 229 (817)
++|+||+||||||||||.||+|++.+ +-.++. .|++....+... ....++..|..... .......+.+..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~d--g~tRi~~~wDq~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~p~~~~ 72 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNED--GTTRILYIWDQTIPGGPPP------GGYYGGGEYTEEIINAALASDNPYDIV 72 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCC--CCchhHHhhhCcCCCCCCC------ccccCceEEeHHHHHHHHhcCCccccC
Confidence 48999999999999999999999763 334444 898876643321 11222222222111 111112223344
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC----------CCHHHHHHHHHHHHHc
Q 003469 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG----------GFVADVVAAIDQAVHD 299 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~----------~~~~di~~ai~~a~~~ 299 (817)
+..|+.||||||||||||+...+ ..+.||||+|+|+++|++...+. +..++++.||+|+++.
T Consensus 73 ~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~ 144 (455)
T cd07478 73 PSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDK 144 (455)
T ss_pred cCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHH
Confidence 56789999999999999986421 25789999999999999987653 5678999999999974
Q ss_pred -----CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCCCccCCCCcEEEEeeeecCccee
Q 003469 300 -----GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYK 373 (817)
Q Consensus 300 -----g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~ 373 (817)
.+.|||||||++.++|++ .+.++++++.+..+ |++||+||||+|....|...... .. ...-.
T Consensus 145 a~~~~~p~VInlSlG~~~g~~~g----~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~-----~~~~~ 212 (455)
T cd07478 145 ALELNKPLVINISLGTNFGSHDG----TSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PN-----GETKT 212 (455)
T ss_pred HHHhCCCeEEEEccCcCCCCCCC----ccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cC-----CceEE
Confidence 478999999998888775 56788888888776 99999999999986555432100 00 00000
Q ss_pred eEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHH
Q 003469 374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK 453 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~ 453 (817)
..+.++.++....+.+...........++... .+............ ..+.......+|.+..+......|...+.
T Consensus 213 ie~~v~~~~~~~~~eiW~~~~d~~~v~i~sP~--Ge~~~~i~~~~~~~---~~~~~~~~~t~i~v~y~~~~~~~g~~~i~ 287 (455)
T cd07478 213 VELNVGEGEKGFNLEIWGDFPDRFSVSIISPS--GESSGRINPGIGGS---ESYKFVFEGTTVYVYYYLPEPYTGDQLIF 287 (455)
T ss_pred EEEEECCCCcceEEEEecCCCCEEEEEEECCC--CCccCccCcCCCcc---eeEEEEECCeEEEEEEcCCCCCCCCeEEE
Confidence 11122222111111111110000001111100 00000000000000 00000011112222211111122222222
Q ss_pred HHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHH-HhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDY-YNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 454 ~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
..+.+ ...|-..+.++......+. +..++|.-.+.. ++..++..- ...-+.+.....++++++.
T Consensus 288 i~~~~-~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~-~~t~f~~~~~~~tit~Pa~~~~vitVga~--------- 352 (455)
T cd07478 288 IRFKN-IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLS-ENTRFLEPDPYTTLTIPGTARSVITVGAY--------- 352 (455)
T ss_pred EEccC-CCccceEEEEEeccCCCce----EEEEecCcCcCC-CCCEeecCCCCceEecCCCCCCcEEEEEE---------
Confidence 22222 2234444555543322211 122233221111 000000000 0000000111122222221
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
+...+.++.||||||+.++ ++||||+|||++|+++.+ ++.|..++|||||||||||++|||
T Consensus 353 --~~~~~~~~~~Ss~G~~~~~-------~~kpdi~APG~~i~s~~~----------~~~~~~~sGTS~Aap~vaG~aALl 413 (455)
T cd07478 353 --NQNNNSIAIFSGRGPTRDG-------RIKPDIAAPGVNILTASP----------GGGYTTRSGTSVAAAIVAGACALL 413 (455)
T ss_pred --eCCCCcccCccCCCcCCCC-------CcCceEEecCCCEEEeec----------CCcEEeeCcHHHHHHHHHHHHHHH
Confidence 2233479999999999986 999999999999999984 568999999999999999999999
Q ss_pred HHhC------CCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCccccc
Q 003469 613 KQKH------PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSG 666 (817)
Q Consensus 613 ~q~~------p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G 666 (817)
+|++ |.|++++||++|++||+++.. ..+++++||||
T Consensus 414 ~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~GyG 455 (455)
T cd07478 414 LQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWGYG 455 (455)
T ss_pred HHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCCCC
Confidence 9975 557999999999999998742 24677899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=451.73 Aligned_cols=288 Identities=19% Similarity=0.239 Sum_probs=207.7
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+.+|+||+|||||||||++||||.++-......+...++....+.++ -.-+.+++|++ +..+
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~------vdd~~G~nfVd------------~~~~ 373 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGN------VDDEYGANFVN------------NDGG 373 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCc------ccccccccccC------------CCCC
Confidence 46899999999999999999999976210000000000000000000 01123445543 2245
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
|.|++||||||||||||...++ .++.||||+|+|+++|+++..+.+..+++++||+||++.|++|||||||.
T Consensus 374 P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~ 445 (639)
T PTZ00262 374 PMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSF 445 (639)
T ss_pred CCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecccc
Confidence 6889999999999999974321 24789999999999999998777889999999999999999999999996
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--------------ccC----CCCcEEEEeeeecCcce
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--------------LVS----YSPWITTVAAAIDDRRY 372 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~~~~vitVgA~~~~~~~ 372 (817)
.. +...+..|+.+|.++|++||+||||+|..... +|+ ..++||+|||+..+.
T Consensus 446 ~~--------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 446 DE--------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred CC--------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 42 34568899999999999999999999864321 111 234566665532100
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
...-.++.||++|. .++||+|||++|+|+. +++.|..++|||||||||||+||||
T Consensus 516 ---~~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmAAP~VAGvAALL 570 (639)
T PTZ00262 516 ---NNQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMAAPHVAAIASLI 570 (639)
T ss_pred ---CCcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchhHHHHHHHHHHH
Confidence 00003445666652 2349999999999998 4568999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCee
Q 003469 613 KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLI 679 (817)
Q Consensus 613 ~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 679 (817)
++++|+|++.||+++|++||.++.... +...++|+||+++|++.++-
T Consensus 571 lS~~P~LT~~qV~~iL~~TA~~l~~~~--------------------n~~~wgG~LDa~kAV~~Ai~ 617 (639)
T PTZ00262 571 LSINPSLSYEEVIRILKESIVQLPSLK--------------------NKVKWGGYLDIHHAVNLAIA 617 (639)
T ss_pred HhhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCcEEcHHHHHHHHHh
Confidence 999999999999999999998764211 11223389999999986553
|
|
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=426.93 Aligned_cols=292 Identities=29% Similarity=0.294 Sum_probs=192.6
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003469 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|||||||||++||||.++..- .|...++. ...+..+.++..+ ....+.|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~------~~~~~~d~---------~~~~~~g~d~~~~-----------~~~~~~D 54 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF------SWKLKFDY---------KAYLLPGMDKWGG-----------FYVIMYD 54 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC------CcccccCc---------CCCccCCcCCCCC-----------ccCCCCC
Confidence 89999999999999999999865210 01000000 0112222222111 1134678
Q ss_pred CCCCCccchhhhccCCCcccccccc-CccceeeccCCCcEEEEEeeecCCCCCHHHHHH-------HHHHHH--HcCCcE
Q 003469 234 GDGHGSHTAAIAAGNNGIPVRMHGH-EFGRASGMAPRARIAVYKALYRLFGGFVADVVA-------AIDQAV--HDGVDI 303 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~-~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~-------ai~~a~--~~g~dV 303 (817)
++||||||||||||+.....+..++ +...+.||||+|+|+.+|++..........+.. +++|+. +++++|
T Consensus 55 ~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V 134 (311)
T cd07497 55 FFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDV 134 (311)
T ss_pred ccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceE
Confidence 9999999999999975321110000 112578999999999999997543333222322 344443 679999
Q ss_pred EEecCCCCCCCCCCccCCCChHHHHHHHH-HHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCcceeeEEEeCC
Q 003469 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAA-VKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
||||||.............+..+.+++.+ .++|+++|+||||+|+... +.|+.++++|+|||++.....+...
T Consensus 135 IN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~---- 210 (311)
T cd07497 135 ISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL---- 210 (311)
T ss_pred EEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh----
Confidence 99999975432211011123344444433 3799999999999998643 4567889999999975321100000
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003469 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
+
T Consensus 211 --------------------~----------------------------------------------------------- 211 (311)
T cd07497 211 --------------------F----------------------------------------------------------- 211 (311)
T ss_pred --------------------h-----------------------------------------------------------
Confidence 0
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003469 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
.......+.
T Consensus 212 -----------------------------------------------------------------------~~~~~~~~~ 220 (311)
T cd07497 212 -----------------------------------------------------------------------GYLPGGSGD 220 (311)
T ss_pred -----------------------------------------------------------------------ccccCCCCC
Confidence 000011247
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC---
Q 003469 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP--- 617 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p--- 617 (817)
++.||||||+.++ ++||||+|||++|+++.+.............|..|+|||||||||||++|||+|++|
T Consensus 221 ~~~fSs~Gp~~~g-------~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~ 293 (311)
T cd07497 221 VVSWSSRGPSIAG-------DPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKE 293 (311)
T ss_pred ccccccCCCCccc-------CCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhc
Confidence 8999999999986 999999999999999876542211111234799999999999999999999999976
Q ss_pred ---CCCHHHHHHHHhccc
Q 003469 618 ---YWSPAAIKSALMTTT 632 (817)
Q Consensus 618 ---~ls~~~ik~~L~~TA 632 (817)
.++|++||++|++||
T Consensus 294 ~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 294 GVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CCCCCCHHHHHHHHHhcC
Confidence 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=413.44 Aligned_cols=245 Identities=26% Similarity=0.393 Sum_probs=196.7
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||.+||+|.+.. ...+|.. ...
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~------------------------------~~~~~~~-------------~~~ 40 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVK------------------------------ERTNWTN-------------EKT 40 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhccc------------------------------cccccCC-------------CCC
Confidence 799999999999999999999998531 0011110 123
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|+.||||||||||+|+.. .+.||||+|+|+.+|++.+...+..++++++++||+++++||||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45788999999999999742 3589999999999999988766777889999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--ccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
... ...++.+++.++.++|++||+||||+|+...+ .++..+++|+|||++.
T Consensus 110 ~~~-------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 162 (255)
T cd07479 110 PDF-------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------------- 162 (255)
T ss_pred CCC-------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------------
Confidence 421 23567778888899999999999999975433 4667788999987521
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
.+.++.|||+|
T Consensus 163 ---------------------------------------------------------------------~~~~~~~S~~g 173 (255)
T cd07479 163 ---------------------------------------------------------------------DDNIARFSSRG 173 (255)
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 12678899999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC----CCCHHHH
Q 003469 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP----YWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~ls~~~i 624 (817)
++... -+...+++||||+|||.+|+++. ..+.|..++|||||||||||++|||+|++| .++|.+|
T Consensus 174 ~~~~~-~p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~v 242 (255)
T cd07479 174 MTTWE-LPGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASM 242 (255)
T ss_pred CCccc-ccCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHH
Confidence 65311 01112478999999999999876 345789999999999999999999999999 6899999
Q ss_pred HHHHhccccccc
Q 003469 625 KSALMTTTTKLD 636 (817)
Q Consensus 625 k~~L~~TA~~~~ 636 (817)
|++|++||+++.
T Consensus 243 k~~L~~sA~~~~ 254 (255)
T cd07479 243 KQALIESATRLP 254 (255)
T ss_pred HHHHHhhcccCC
Confidence 999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=410.80 Aligned_cols=271 Identities=26% Similarity=0.257 Sum_probs=201.8
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||.+||++.+.... ++.+...+.. ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-------------------------~l~~~~~~~~------------~~~~ 43 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-------------------------DLPGNVNVLG------------DLDG 43 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-------------------------CCCcceeecc------------ccCC
Confidence 47999999999999999998865432100 1111111100 0123
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|..+|||||||||+ ||||+|+|+.+|+. +..+++++||+||+++|++|||||||.
T Consensus 44 ~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~-----~~~~~i~~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 44 GSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG-----GGELDFAAAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred CCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC-----CCHHHHHHHHHHHHHcCCCEEEecccc
Confidence 4578899999999984 58999999998863 247789999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
...+. .....+..+++++.++ |++||+||||+|.... ..++..+++|+|||++.+.......
T Consensus 101 ~~~~~----~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------ 164 (275)
T cd05562 101 LNEPF----FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------ 164 (275)
T ss_pred cCCCc----ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------
Confidence 54321 1234678889989887 9999999999998543 3467899999999975332100000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
|.
T Consensus 165 --------------------------------~~---------------------------------------------- 166 (275)
T cd05562 165 --------------------------------DP---------------------------------------------- 166 (275)
T ss_pred --------------------------------cc----------------------------------------------
Confidence 00
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+ . .......+.||++|
T Consensus 167 --------~-----------------------------------~---------------------~~~~s~~~~~~~~~ 182 (275)
T cd05562 167 --------A-----------------------------------P---------------------GGTPSSFDPVGIRL 182 (275)
T ss_pred --------c-----------------------------------c---------------------CCCcccccCCcccC
Confidence 0 0 00011456688999
Q ss_pred CCCCCCCcCCccccCCccccCCC-cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003469 549 PNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
|+.++ ++||||+|||+ ++.++. .++.|..++|||||||||||++|||+|++|+|+++|||++
T Consensus 183 p~~~~-------~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~ 245 (275)
T cd05562 183 PTPEV-------RQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDA 245 (275)
T ss_pred cCCCC-------CcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 98875 89999999975 344443 3568999999999999999999999999999999999999
Q ss_pred HhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 628 LMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 628 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|++||+++...+ .+..||||+||+.+|++
T Consensus 246 L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 246 LRSTALDMGEPG-------------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHhCcccCCCC-------------------CCCCcCcCcccHHHHhh
Confidence 999999875322 34589999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=422.01 Aligned_cols=315 Identities=31% Similarity=0.412 Sum_probs=232.2
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccc----cCCCCCCccCCCceeeeeehhHHHHh
Q 003469 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCE----VDPDTKRSFCNGKIIGAQHFAEAAIA 218 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~n~ki~~~~~~~~~~~~ 218 (817)
+|++. .++|+||+|||||||||++||+|.+...... .|.+.+. ........+++.+++++++|.+...
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDDSKA----KYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND- 73 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCCccc----ccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC-
Confidence 57663 2589999999999999999999998743221 1110010 0111223456778999999875411
Q ss_pred hccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeec--CCCCCHHHHHHHHHHH
Q 003469 219 ARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYR--LFGGFVADVVAAIDQA 296 (817)
Q Consensus 219 ~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~--~~~~~~~di~~ai~~a 296 (817)
+.....|..+|||||||||+|...... ....+.||||+|+|+.+|++.. ........+++|++++
T Consensus 74 --------~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a 140 (346)
T cd07475 74 --------DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDA 140 (346)
T ss_pred --------ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHH
Confidence 111144788999999999999864311 1125799999999999999974 4456778899999999
Q ss_pred HHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc----------------cCCCCcE
Q 003469 297 VHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL----------------VSYSPWI 360 (817)
Q Consensus 297 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~~~~v 360 (817)
++.|++|||||||...... .....+..+++++.++|++||+||||+|...... +...+++
T Consensus 141 ~~~g~~Vin~S~G~~~~~~----~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 141 VKLGADVINMSLGSTAGFV----DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHcCCCEEEECCCcCCCCC----CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999865432 3456788899999999999999999998654321 1223344
Q ss_pred EEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEe
Q 003469 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCG 440 (817)
Q Consensus 361 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~ 440 (817)
|+||++..
T Consensus 217 i~Vga~~~------------------------------------------------------------------------ 224 (346)
T cd07475 217 LTVASANK------------------------------------------------------------------------ 224 (346)
T ss_pred eEEeeccc------------------------------------------------------------------------
Confidence 44443210
Q ss_pred cccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEee
Q 003469 441 YSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSF 520 (817)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 520 (817)
T Consensus 225 -------------------------------------------------------------------------------- 224 (346)
T cd07475 225 -------------------------------------------------------------------------------- 224 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccc
Q 003469 521 KGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSM 600 (817)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSm 600 (817)
.......+.++.||+|||+.++ ++||||+|||.+|+++. .++.|..++||||
T Consensus 225 -----------~~~~~~~~~~~~~S~~G~~~~~-------~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS~ 276 (346)
T cd07475 225 -----------KVPNPNGGQMSGFSSWGPTPDL-------DLKPDITAPGGNIYSTV----------NDNTYGYMSGTSM 276 (346)
T ss_pred -----------ccCCCCCCccCCCcCCCCCccc-------CcCCeEEeCCCCeEEec----------CCCceEeeCcHHH
Confidence 0001123478899999999876 89999999999999987 3467899999999
Q ss_pred hhHHHHHHHHHHHHh----CCCCCHHH----HHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccc
Q 003469 601 AAPHIAGIAALVKQK----HPYWSPAA----IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRA 672 (817)
Q Consensus 601 AaP~VAG~aALl~q~----~p~ls~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 672 (817)
|||+|||++|||+|+ +|.|++.+ ||.+|++||.+...... ....+.+.++|+|+||+.+
T Consensus 277 AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~-------------~~~~~~~~~~G~G~vn~~~ 343 (346)
T cd07475 277 ASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSED-------------TKTYYSPRRQGAGLIDVAK 343 (346)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCC-------------CCccCCccccCcchhcHHH
Confidence 999999999999998 78898876 78899999995321111 3455777899999999999
Q ss_pred ccC
Q 003469 673 ALD 675 (817)
Q Consensus 673 Al~ 675 (817)
|++
T Consensus 344 Av~ 346 (346)
T cd07475 344 AIA 346 (346)
T ss_pred hhC
Confidence 985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=413.64 Aligned_cols=296 Identities=31% Similarity=0.425 Sum_probs=229.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||+|||++||+|.++...+ .++.+.++|..+... .
T Consensus 4 ~~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~~~-----------------------~~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 4 KLHAE----GITGKGVKVAVVDTGIDYTHPALGGCFGPG-----------------------CKVAGGYDFVGDDYD--G 54 (312)
T ss_pred hHHhC----CCCCCCCEEEEEECCCCCCChhhhcCCCCC-----------------------ceeccccccCCcccc--c
Confidence 45555 799999999999999999999999862211 122333333322111 0
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
.+...+...+.|..+|||||||||+|.... ..+.||||+|+|+.+|++...+....+.+++++++|+++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 112223346678899999999999997542 24789999999999999987666777889999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+|||||||....+. ...+..+++++.++|+++|+||||+|.... ..++..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~~------~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 126 DVITASLGGPSGWS------EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred CEEEeCCCcCCCCC------CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 99999999865432 357778889999999999999999987532 2345667777777631
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhC-C
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKH-P 617 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p 617 (817)
+.||+|||+.+. ..||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~~-------~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNEL-------YLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCCC-------CcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 457999999875 89999999999999988542 2369999999999999999999999999 9
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeee
Q 003469 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIF 680 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~ 680 (817)
.+++.+||++|++||.++...+..-. ....++..++|+|+||+.+|++..-.+
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~~~----------~~~~~~~~~~G~G~vn~~~a~~~~~~~ 303 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGTSA----------LPDLAPVAQQGAGLVNAYKALYATTTL 303 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCCcc----------ccCCCCHhhcCcceeeHHHHhcCCccc
Confidence 99999999999999998764332110 111366779999999999999965443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=393.53 Aligned_cols=250 Identities=27% Similarity=0.318 Sum_probs=202.6
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccC
Q 003469 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAF 222 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~ 222 (817)
.|.. +++|+||+|||||+|||++||+|.+.....+ ..+..
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~~~~----------------------------~~~~~-------- 41 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANLTPL----------------------------FTYAA-------- 41 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCccccc----------------------------cCccc--------
Confidence 4555 7899999999999999999999997521100 00000
Q ss_pred CCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCC-HHHHHHHHHHHHHcCC
Q 003469 223 NPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGF-VADVVAAIDQAVHDGV 301 (817)
Q Consensus 223 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~-~~di~~ai~~a~~~g~ 301 (817)
......|..+|||||||||+|+... .+.||||+|+|+.+|++.....+. ..++++||+||+++|+
T Consensus 42 ----~~~~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~ 107 (267)
T cd07476 42 ----AACQDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGA 107 (267)
T ss_pred ----cCCCCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCC
Confidence 0123346789999999999997531 368999999999999998764443 6789999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||..... ......+.++++++.++|++||+||||+|.....+|+..+++|+|||++.+
T Consensus 108 ~VIN~S~G~~~~~----~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 171 (267)
T cd07476 108 HIINISGGRLTQT----GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------ 171 (267)
T ss_pred CEEEecCCcCCCC----CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------
Confidence 9999999974421 123557889999999999999999999998877788889999999985310
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
+.+
T Consensus 172 -----------------------------------------------------------------------------~~~ 174 (267)
T cd07476 172 -----------------------------------------------------------------------------GLP 174 (267)
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 145
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC---
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY--- 618 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--- 618 (817)
+.||+||+.. .||||+|||.+|+++. .++.|..++|||||||||||++|||+|++|.
T Consensus 175 ~~~s~~g~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~ 234 (267)
T cd07476 175 LKFSNWGADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRGA 234 (267)
T ss_pred eeecCCCCCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhCC
Confidence 6789999864 4889999999999987 3468999999999999999999999999887
Q ss_pred -CCHHHHHHHHhccccccccCC
Q 003469 619 -WSPAAIKSALMTTTTKLDRAS 639 (817)
Q Consensus 619 -ls~~~ik~~L~~TA~~~~~~g 639 (817)
++|++||++|++||+++...+
T Consensus 235 ~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 235 PPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred CCCHHHHHHHHHHhCccCCCcc
Confidence 899999999999999986543
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-46 Score=395.43 Aligned_cols=269 Identities=23% Similarity=0.297 Sum_probs=190.4
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHh-----hccCC------
Q 003469 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIA-----ARAFN------ 223 (817)
Q Consensus 155 ~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~-----~~~~~------ 223 (817)
|+|+|||||||||++||+|++........++ .++..+.+.++. .-+++++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~-~~~~d~d~ng~~------dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIP-GNGIDDDNNGYI------DDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccC-CCCccCCCCCcc------ccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999987211111110 111111222221 12455555431100 00000
Q ss_pred CCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcE
Q 003469 224 PAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI 303 (817)
Q Consensus 224 ~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dV 303 (817)
...+...+.|..+|||||||||+|....+ .++.||||+|+|+.+|++.. +....+++++||+||++.|++|
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~I 144 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAKV 144 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCcE
Confidence 01122345578999999999999975422 14789999999999999864 3566788999999999999999
Q ss_pred EEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc---c--------CCCCcEEEEeeeecCcce
Q 003469 304 LSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL---V--------SYSPWITTVAAAIDDRRY 372 (817)
Q Consensus 304 In~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---~--------~~~~~vitVgA~~~~~~~ 372 (817)
||||||..... ....+..+++++.++|+++|+||||+|...... + ...+++|+|||+...
T Consensus 145 iN~S~G~~~~~------~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 145 INMSFGKSFSP------NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEeCCCCCCCC------ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 99999964322 234678889999999999999999998653211 1 123455555543110
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
.....++.||++|+. +|||+|||.+|+++. .++.|..++|||||||||||++|||
T Consensus 216 ---~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl~ 270 (291)
T cd07483 216 ---YENNLVANFSNYGKK------------NVDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAALI 270 (291)
T ss_pred ---CCcccccccCCCCCC------------ceEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHHH
Confidence 001157889999974 349999999999987 3468999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhcccc
Q 003469 613 KQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 613 ~q~~p~ls~~~ik~~L~~TA~ 633 (817)
+|++|+|++.|||++|++||.
T Consensus 271 ~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 271 WSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=384.00 Aligned_cols=227 Identities=27% Similarity=0.416 Sum_probs=186.5
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003469 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 157 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
|+|||||||||++||+|.++. +..+++. .....|..+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------------~~~~~~~--------------~~~~~~~~~ 37 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------------IARLFFA--------------GPGAPAPSA 37 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------------cccccCC--------------CCCCCCCCC
Confidence 789999999999999998751 1111110 013456789
Q ss_pred CCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC---CCCHHHHHHHHHHHHHcCCcEEEecCCCCCC
Q 003469 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF---GGFVADVVAAIDQAVHDGVDILSLSVGPNSP 313 (817)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~---~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~ 313 (817)
|||||||||+|+... ..||||+|+|+.+|++...+ .++.+++++||+||++.|++|||||||...
T Consensus 38 HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~- 105 (239)
T cd05561 38 HGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP- 105 (239)
T ss_pred CHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 999999999997531 16999999999999998643 356778999999999999999999999631
Q ss_pred CCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCC
Q 003469 314 PATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPA 392 (817)
Q Consensus 314 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (817)
...+..+++++.++|++||+||||+|... ..+|+..+++|+|++++.
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------ 153 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------ 153 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------
Confidence 34678899999999999999999999763 456777889999987521
Q ss_pred CCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeec
Q 003469 393 THGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVE 472 (817)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~ 472 (817)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCC
Q 003469 473 NVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIK 552 (817)
Q Consensus 473 ~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~ 552 (817)
.+.++.||++|+..
T Consensus 154 -----------------------------------------------------------------~~~~~~~s~~g~~~- 167 (239)
T cd05561 154 -----------------------------------------------------------------RGRLYREANRGAHV- 167 (239)
T ss_pred -----------------------------------------------------------------CCCccccCCCCCcc-
Confidence 11567889999876
Q ss_pred CCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q 003469 553 DFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTT 632 (817)
Q Consensus 553 ~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA 632 (817)
||+|||.+|+++. .++.|..++|||||||||||++|||+|++| ++++|||++|++||
T Consensus 168 ------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta 224 (239)
T cd05561 168 ------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATA 224 (239)
T ss_pred ------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHh
Confidence 9999999999976 456899999999999999999999999999 99999999999999
Q ss_pred cccccCC
Q 003469 633 TKLDRAS 639 (817)
Q Consensus 633 ~~~~~~g 639 (817)
+++...+
T Consensus 225 ~~~g~~~ 231 (239)
T cd05561 225 KDLGPPG 231 (239)
T ss_pred hccCCCC
Confidence 9876544
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=395.19 Aligned_cols=289 Identities=39% Similarity=0.560 Sum_probs=217.5
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc---CCCCCCCCC
Q 003469 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA---FNPAVDFAS 230 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~---~~~~~~~~~ 230 (817)
|+||+|||||+|||++||+|.+.. +.+.++..+++|......... .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG-----------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDAS 57 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC-----------------------CCCCceeeeeECccCCCCcccccccccccccCC
Confidence 899999999999999999999651 122344555555432111000 000001122
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
..|..+|||||||||+|+..+ ...+.||||+|+|+.+|++.....+...++++||+|+++++++|||||||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 58 AGDATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 456889999999999997542 125789999999999999986666788899999999999999999999997
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc--cCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
.... ..+.+..+++++.++|+++|+||||+|...... ++..+++|+|||+.....
T Consensus 130 ~~~~------~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 130 SVNG------PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCC------CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 5432 345788899999999999999999998765443 567899999998630000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccc-cCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF-SAR 547 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f-SS~ 547 (817)
........| |+.
T Consensus 187 -------------------------------------------------------------------~~~~~~~~~~s~~ 199 (295)
T cd07474 187 -------------------------------------------------------------------AEADTVGPSSSRG 199 (295)
T ss_pred -------------------------------------------------------------------CCCCceeccCCCC
Confidence 000123334 444
Q ss_pred CCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003469 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 548 Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
|+... .++||||+|||.+|.+++... ++.|..++|||||||+|||++|||+|++|+|++++||++
T Consensus 200 ~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~ 264 (295)
T cd07474 200 PPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAA 264 (295)
T ss_pred CCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 55554 389999999999999987532 357899999999999999999999999999999999999
Q ss_pred HhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccc
Q 003469 628 LMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAA 673 (817)
Q Consensus 628 L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 673 (817)
|++||++....+. ..+++..+|+|+||+.+|
T Consensus 265 L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 265 LMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 9999998765432 122456899999999887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-45 Score=383.13 Aligned_cols=248 Identities=28% Similarity=0.355 Sum_probs=197.7
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC-CCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS-PLDG 234 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~-~~D~ 234 (817)
||+|||||||||++||+|.... + ..+.++.+.++|.+.. .. ..|.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~---------~-------------~~~~~i~~~~~~~~~~------------~~~~~~~ 46 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH---------L-------------FKNLRILGEYDFVDNS------------NNTNYTD 46 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc---------c-------------ccCCceeeeecCccCC------------CCCCCCC
Confidence 7999999999999999995321 0 1123577777775431 12 2578
Q ss_pred CCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC--CCHHHHHHHHHHHHHcCCcEEEecCCCCC
Q 003469 235 DGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSVGPNS 312 (817)
Q Consensus 235 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~--~~~~di~~ai~~a~~~g~dVIn~SlG~~~ 312 (817)
++|||||||||+|+.. +.+.||||+|+|+.+|+...... ....+++.|++|+.+.|++|||||||...
T Consensus 47 ~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 47 DDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 8999999999999753 24689999999999998764322 24556899999999999999999999764
Q ss_pred CCCCC-------ccCCCChHHHHHHHHHHcCceEEEecCCCCCC---CCCccCCCCcEEEEeeeecCcceeeEEEeCCCc
Q 003469 313 PPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF---PKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGK 382 (817)
Q Consensus 313 ~~~~~-------~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~---~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~ 382 (817)
..... .......+.++++.+.++|+++|+||||+|.. ....|+..+++|+|||...
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 182 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------------- 182 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------------
Confidence 32110 01123467888999999999999999999987 3456778899999998521
Q ss_pred EEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhc
Q 003469 383 ILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSL 462 (817)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~ 462 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccc
Q 003469 463 GAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVA 542 (817)
Q Consensus 463 Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 542 (817)
.+.++
T Consensus 183 ---------------------------------------------------------------------------~~~~~ 187 (261)
T cd07493 183 ---------------------------------------------------------------------------NGNKA 187 (261)
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11577
Q ss_pred cccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHH
Q 003469 543 LFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622 (817)
Q Consensus 543 ~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~ 622 (817)
.||++||+.++ ++||||+|||.+|++.. .++.|..++|||||||+|||++|||+|++|+|++.
T Consensus 188 ~~S~~G~~~~~-------~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~ 250 (261)
T cd07493 188 SFSSIGPTADG-------RLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWTNL 250 (261)
T ss_pred ccCCcCCCCCC-------CcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 89999999876 89999999999999854 34679999999999999999999999999999999
Q ss_pred HHHHHHhcccc
Q 003469 623 AIKSALMTTTT 633 (817)
Q Consensus 623 ~ik~~L~~TA~ 633 (817)
|||++|++||+
T Consensus 251 ~i~~~l~~tA~ 261 (261)
T cd07493 251 QIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHhcC
Confidence 99999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=383.45 Aligned_cols=247 Identities=34% Similarity=0.422 Sum_probs=195.3
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003469 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|||||+|||++||+|.+. |++.... .+...+++. +.......+.|
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~----------~~~~~~~-----------~~~~~~~~~---------d~~~~~~~~~d 50 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK----------YRGWGGG-----------SADHDYNWF---------DPVGNTPLPYD 50 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc----------ccccCCC-----------Ccccccccc---------cCCCCCCCCCC
Confidence 89999999999999999999975 1110000 000000110 11112345668
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH------------cCC
Q 003469 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH------------DGV 301 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~------------~g~ 301 (817)
..+|||||||||+|..... ...||||+|+|+.+|++.... ++..+++++++++++ .|+
T Consensus 51 ~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (264)
T cd07481 51 DNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNG-GNDADYLRCAQWMLAPTDSAGNPADPDLAP 120 (264)
T ss_pred CCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCC-CcHHHHHHHHHHHHhcccccccccccccCC
Confidence 8999999999999975321 248999999999999998764 778899999999975 789
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC---ccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT---LVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+|||||||.... ....+..+++.+.++|++||+||||+|..... .++..+++|+|||++.
T Consensus 121 ~Iin~S~G~~~~-------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~---------- 183 (264)
T cd07481 121 DVINNSWGGPSG-------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR---------- 183 (264)
T ss_pred eEEEeCCCcCCC-------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC----------
Confidence 999999997532 23567778888999999999999999875432 4667889999987421
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 184 -------------------------------------------------------------------------------~ 184 (264)
T cd07481 184 -------------------------------------------------------------------------------N 184 (264)
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.++.||++||...+ ++||||+|||.+|.++.+ ++.|..++|||||||+|||++|||+|++|+
T Consensus 185 ~~~~~~S~~g~~~~~-------~~~~dv~ApG~~i~s~~~----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 247 (264)
T cd07481 185 DVLADFSSRGPSTYG-------RIKPDISAPGVNIRSAVP----------GGGYGSSSGTSMAAPHVAGVAALLWSANPS 247 (264)
T ss_pred CCCccccCCCCCCCC-------CcCceEEECCCCeEEecC----------CCceEeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 267889999999875 899999999999999883 467899999999999999999999999999
Q ss_pred --CCHHHHHHHHhcccc
Q 003469 619 --WSPAAIKSALMTTTT 633 (817)
Q Consensus 619 --ls~~~ik~~L~~TA~ 633 (817)
++++|||.+|++||+
T Consensus 248 ~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 248 LIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=379.17 Aligned_cols=336 Identities=26% Similarity=0.370 Sum_probs=259.0
Q ss_pred hCCCeEEEEEeCCcccccccCCCCCccccccccccccccChHHHHHHHHHHHHHHHHHHHHhhccC--------------
Q 003469 19 LGRAEVYIVTVEGEPIISYRGGDNGFEATAVESDEKIDTTSELVTSYARHLEKKHDMLLGLLFERD-------------- 84 (817)
Q Consensus 19 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 84 (817)
...+.+|||.|+.. ...+.++.+.++++..|+.-.......+
T Consensus 77 ~~~~~~YiV~f~~~------------------------~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~ 132 (501)
T KOG1153|consen 77 EALPSRYIVVFKPD------------------------ASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTF 132 (501)
T ss_pred cccccceEEEeCCC------------------------ccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhh
Confidence 46789999999944 2345666777777766654433211111
Q ss_pred -CceEEEEecc-ccceEEEEcCHHHHHHHHcCCCceEEEccceecccc-----CCCCcccCCCC---------CCCCCCC
Q 003469 85 -TYKKLYSYKH-LINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLT-----THTPEFLGLPT---------GVWPTGG 148 (817)
Q Consensus 85 -~~~~~~~y~~-~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~---------~~w~~~~ 148 (817)
..+..+.... +|+|+.-..+.+.+..++..|-++.++++..++... .+....|++.+ ..|...-
T Consensus 133 ~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~ 212 (501)
T KOG1153|consen 133 GGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYV 212 (501)
T ss_pred cccccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEE
Confidence 1344555554 899999999999999999999999999887775533 12222344432 1233221
Q ss_pred CCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCC
Q 003469 149 GFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDF 228 (817)
Q Consensus 149 ~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 228 (817)
..-..|+||...|+||||+.+||||.++.. | |..++ +.
T Consensus 213 Y~~~aG~gvtaYv~DTGVni~H~dFegRa~--------w------Ga~i~----------------------------~~ 250 (501)
T KOG1153|consen 213 YEIDAGKGVTAYVLDTGVNIEHPDFEGRAI--------W------GATIP----------------------------PK 250 (501)
T ss_pred eecccCCCeEEEEeccccccccccccccee--------c------ccccC----------------------------CC
Confidence 223489999999999999999999999842 2 11110 01
Q ss_pred CCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc---------
Q 003469 229 ASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD--------- 299 (817)
Q Consensus 229 ~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~--------- 299 (817)
....|++||||||||+|++.. .|||.+++|+++||+.+++.+..+++++++|++++.
T Consensus 251 ~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~ 316 (501)
T KOG1153|consen 251 DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEG 316 (501)
T ss_pred CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccC
Confidence 233589999999999999974 699999999999999999999999999999999986
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+..|.|||+|+. .+-.++.|+++|.+.|+++++||||+..+.+ +.|++++.+|||||++.
T Consensus 317 k~sv~NlSlGg~---------~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------- 377 (501)
T KOG1153|consen 317 KKSVANLSLGGF---------RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------- 377 (501)
T ss_pred CCeEEEEecCCc---------ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------
Confidence 578999999985 3457999999999999999999999988765 45678999999999631
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 378 -------------------------------------------------------------------------------~ 378 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------N 378 (501)
T ss_pred -------------------------------------------------------------------------------c
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.+|.||+||++. ||.|||++|+|+|... ...-.++||||||+|||||++|.+++.+|.
T Consensus 379 D~iA~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~ 437 (501)
T KOG1153|consen 379 DTIAFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPL 437 (501)
T ss_pred cchhhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCC
Confidence 2799999999999 9999999999999753 235578999999999999999999999883
Q ss_pred ---------CCHHHHHHHHhcccc
Q 003469 619 ---------WSPAAIKSALMTTTT 633 (817)
Q Consensus 619 ---------ls~~~ik~~L~~TA~ 633 (817)
.+|.++|..+..-..
T Consensus 438 ~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 438 PDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred ChHHhhhccCChHHhhhhhhcccc
Confidence 378888887766544
|
|
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=387.57 Aligned_cols=221 Identities=27% Similarity=0.328 Sum_probs=167.6
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHHHHHHHcCCcEEEecCC
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAIDQAVHDGVDILSLSVG 309 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai~~a~~~g~dVIn~SlG 309 (817)
.|+++|||||||||||+.... ..+.||||+|+|+++|++....+. ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 578899999999999975321 247899999999999998754332 2356999999999999999999999
Q ss_pred CCCCCCCCccCCCChHHHHHHH-HHHcCceEEEecCCCCCCCCCc--cC-CCCcEEEEeeeecCcceeeEEEeCCCcEEE
Q 003469 310 PNSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKTL--VS-YSPWITTVAAAIDDRRYKNHLNLGNGKILA 385 (817)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~--~~-~~~~vitVgA~~~~~~~~~~~~~~~~~~~~ 385 (817)
.....++. ..+..++.+ +.++|+++|+||||+|+...++ |+ ..+++|+|||+.....+....
T Consensus 254 ~~~~~~~~-----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y--------- 319 (412)
T cd04857 254 EATHWPNS-----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEY--------- 319 (412)
T ss_pred cCCCCccc-----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccc---------
Confidence 86543221 124444444 4568999999999999876554 32 478999999964221100000
Q ss_pred eeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCce
Q 003469 386 GIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAA 465 (817)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 465 (817)
.
T Consensus 320 ------------------------------------------~------------------------------------- 320 (412)
T cd04857 320 ------------------------------------------S------------------------------------- 320 (412)
T ss_pred ------------------------------------------c-------------------------------------
Confidence 0
Q ss_pred EEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccccc
Q 003469 466 GFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFS 545 (817)
Q Consensus 466 ~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fS 545 (817)
......+.++.||
T Consensus 321 -------------------------------------------------------------------~~~~~~~~~~~fS 333 (412)
T cd04857 321 -------------------------------------------------------------------LREKLPGNQYTWS 333 (412)
T ss_pred -------------------------------------------------------------------cccccCCcccccc
Confidence 0000123689999
Q ss_pred CCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH----hCCCCCH
Q 003469 546 ARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ----KHPYWSP 621 (817)
Q Consensus 546 S~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~ 621 (817)
||||+.++ ++||||+|||+.|.|+- .. ....|..|+|||||||||||++|||++ .+|+|+|
T Consensus 334 SrGP~~dG-------~~~pdI~APG~~I~s~p-~~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp 398 (412)
T cd04857 334 SRGPTADG-------ALGVSISAPGGAIASVP-NW-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTP 398 (412)
T ss_pred ccCCcccC-------CcCceEEeCCCcEEEcc-cC-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 99999997 99999999999998852 11 235789999999999999999999985 4789999
Q ss_pred HHHHHHHhcccccc
Q 003469 622 AAIKSALMTTTTKL 635 (817)
Q Consensus 622 ~~ik~~L~~TA~~~ 635 (817)
.+||++|++||+++
T Consensus 399 ~~Vk~aL~~TA~~~ 412 (412)
T cd04857 399 YSVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=374.73 Aligned_cols=258 Identities=35% Similarity=0.542 Sum_probs=206.0
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003469 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|+||+|+|||+|||++||+|.+..... +.+.. .........|
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~-----------------------------~~~~~---------~~~~~~~~~d 42 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF-----------------------------ADFVN---------TVNGRTTPYD 42 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc-----------------------------ccccc---------cccCCCCCCC
Confidence 899999999999999999999762110 00000 0011234557
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc----CCcEEEecCC
Q 003469 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD----GVDILSLSVG 309 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~----g~dVIn~SlG 309 (817)
..+|||||||||+|+.... .+.+.||||+|+|+.+|+++..+.+..+++++||+|+++. +++|||||||
T Consensus 43 ~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g 115 (264)
T cd07487 43 DNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLG 115 (264)
T ss_pred CCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccC
Confidence 7899999999999985421 1247999999999999999987677888999999999998 9999999999
Q ss_pred CCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEee
Q 003469 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGI 387 (817)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~ 387 (817)
..... ....+.+..+++++.++|++||+||||+|.... ..++..+++|+|||+..+..
T Consensus 116 ~~~~~----~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------- 175 (264)
T cd07487 116 APPDP----SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------- 175 (264)
T ss_pred CCCCC----CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------
Confidence 86543 224678899999999999999999999998765 45677899999998632110
Q ss_pred ecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEE
Q 003469 388 GLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGF 467 (817)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~ 467 (817)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCC
Q 003469 468 VLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSAR 547 (817)
Q Consensus 468 i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~ 547 (817)
....++.||++
T Consensus 176 ---------------------------------------------------------------------~~~~~~~~s~~ 186 (264)
T cd07487 176 ---------------------------------------------------------------------HDDGISYFSSR 186 (264)
T ss_pred ---------------------------------------------------------------------CCccccccccC
Confidence 00157889999
Q ss_pred CCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003469 548 GPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSA 627 (817)
Q Consensus 548 Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~ 627 (817)
||+.++ ++||||+|||.+|+++.+..... ....++.|..++|||||||+|||++|||+|++|.+++.+||++
T Consensus 187 G~~~~~-------~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~ 258 (264)
T cd07487 187 GPTGDG-------RIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCI 258 (264)
T ss_pred CCCCCC-------CcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHH
Confidence 999986 89999999999999976532111 1124568999999999999999999999999999999999999
Q ss_pred Hhcccc
Q 003469 628 LMTTTT 633 (817)
Q Consensus 628 L~~TA~ 633 (817)
|++||+
T Consensus 259 L~~tA~ 264 (264)
T cd07487 259 LRDTAT 264 (264)
T ss_pred HHhhcC
Confidence 999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=373.77 Aligned_cols=262 Identities=29% Similarity=0.364 Sum_probs=199.5
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCC-CCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSH-HTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
+|.. +++|+||+|||||||||++||+|.+. ...++.+. ...+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------------~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------------VNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------------cCCccccc-------
Confidence 5766 78999999999999999999999987 22222110 00000000
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
+.........|..||||||||||+|+........|.. .+.|+||+|+|+.+|++........+++++||++|++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0000122345778999999999999754321111111 3457999999999999988666778889999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHc-------CceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceee
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-------GVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN 374 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~ 374 (817)
+|||||||.... ..+...+..++..+.++ |++||+||||+|......++..+++|+|++++.
T Consensus 126 ~Vin~S~g~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 126 VILQNSWGGTGG-----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred cEEEecCCCCCc-----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999997542 12345677888888888 999999999999887777888899999998521
Q ss_pred EEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHH
Q 003469 375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~ 454 (817)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccc
Q 003469 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL 534 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (817)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCcCCccccCCccccCCC-cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003469 535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGS-LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 535 ~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
.+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 195 ---~~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 195 ---NDNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ---CCCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 11567899999876 8999999 89888753211 124579999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHhcc
Q 003469 614 QKHPY-WSPAAIKSALMTT 631 (817)
Q Consensus 614 q~~p~-ls~~~ik~~L~~T 631 (817)
|++|+ ++++|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=379.18 Aligned_cols=262 Identities=24% Similarity=0.249 Sum_probs=189.4
Q ss_pred EEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCCC
Q 003469 158 VIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGH 237 (817)
Q Consensus 158 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 237 (817)
+|||||||||.+||+|.+... ....+.. ....+.|..||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~-----------------------------~~~~~~~------------~~~~~~d~~gH 40 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA-----------------------------EDDLDSD------------EPGWTADDLGH 40 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc-----------------------------ccccccc------------CCCCcCCCCCC
Confidence 799999999999999997611 0111100 00114688999
Q ss_pred CccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC----CCCHHHHHHHHHHHHHcC---CcEEEecCCC
Q 003469 238 GSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF----GGFVADVVAAIDQAVHDG---VDILSLSVGP 310 (817)
Q Consensus 238 GThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~----~~~~~di~~ai~~a~~~g---~dVIn~SlG~ 310 (817)
||||||||++.... .....|+||+|+|+.+|++...+ ..+.+++++||+|+++.+ ++|||||||.
T Consensus 41 GT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~ 112 (291)
T cd04847 41 GTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGS 112 (291)
T ss_pred hHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCC
Confidence 99999999975431 12357999999999999998864 245678999999999853 4899999998
Q ss_pred CCCCCCCccCCCChHHHHHHH-HHHcCceEEEecCCCCCCCCC------------ccCCCCcEEEEeeeecCcceeeEEE
Q 003469 311 NSPPATTKTTFLNPFDVTLLA-AVKAGVFVAQAAGNGGPFPKT------------LVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~------------~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
.....+. ....+..++++ +.++|++||+||||+|..... .|+.++++|+|||++.+.......
T Consensus 113 ~~~~~~~---~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s- 188 (291)
T cd04847 113 PLPIDDG---RPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA- 188 (291)
T ss_pred CCCccCC---CCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc-
Confidence 7544322 12345666654 568999999999999987543 245678999999976432100000
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
.
T Consensus 189 ------------------------------------------------~------------------------------- 189 (291)
T cd04847 189 ------------------------------------------------R------------------------------- 189 (291)
T ss_pred ------------------------------------------------c-------------------------------
Confidence 0
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
.+ ...
T Consensus 190 --------------------------------------------------------~~-------------------~~~ 194 (291)
T cd04847 190 --------------------------------------------------------YS-------------------AVG 194 (291)
T ss_pred --------------------------------------------------------cc-------------------ccc
Confidence 00 000
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCC--------CCCccCCceEeecCccchhHHHHHHH
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTD--------EANFVGEGFALISGTSMAAPHIAGIA 609 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSmAaP~VAG~a 609 (817)
....+.||||||..++ .+||||+|||++|.+........ .....++.|..++|||||||||||++
T Consensus 195 ~~~~~~fs~~Gp~~~~-------~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~a 267 (291)
T cd04847 195 PAPAGATTSSGPGSPG-------PIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLA 267 (291)
T ss_pred cccCCCccccCCCCCC-------CcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHH
Confidence 0123449999999986 99999999999998865321100 01113568999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhcccc
Q 003469 610 ALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 610 ALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
|||+|++|+++|++||++|++||+
T Consensus 268 All~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 268 AGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=365.56 Aligned_cols=229 Identities=34% Similarity=0.480 Sum_probs=192.9
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||+||+++||+|.++ +...++|... .+
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------------~~~~~~~~~~-------------~~ 58 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------------AIWGADFVGG-------------DP 58 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCC-----------------------------eeeeeecCCC-------------CC
Confidence 68999999999999999999999875 1222222211 12
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-----CCcEEE
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-----GVDILS 305 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-----g~dVIn 305 (817)
..|..+|||||||||+++. .||||+|+|+.+|+++..+.+..++++++++++++. +++|||
T Consensus 59 ~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin 124 (255)
T cd04077 59 DSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVAN 124 (255)
T ss_pred CCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEE
Confidence 4578899999999999862 699999999999999987667888999999999987 489999
Q ss_pred ecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCCCcEE
Q 003469 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKIL 384 (817)
Q Consensus 306 ~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~ 384 (817)
||||... ...+..+++++.++|+++|+||||+|... ...++..+++|+|||++.+
T Consensus 125 ~S~g~~~---------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 125 MSLGGGA---------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred eCCCCCC---------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 9999742 35678889999999999999999999765 4556788999999985311
Q ss_pred EeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCc
Q 003469 385 AGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGA 464 (817)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga 464 (817)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccc
Q 003469 465 AGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALF 544 (817)
Q Consensus 465 ~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 544 (817)
+.++.|
T Consensus 181 --------------------------------------------------------------------------~~~~~~ 186 (255)
T cd04077 181 --------------------------------------------------------------------------DARASF 186 (255)
T ss_pred --------------------------------------------------------------------------CCccCc
Confidence 147789
Q ss_pred cCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHH
Q 003469 545 SARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624 (817)
Q Consensus 545 SS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~i 624 (817)
|++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++||
T Consensus 187 S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v 245 (255)
T cd04077 187 SNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEV 245 (255)
T ss_pred ccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHH
Confidence 9999976 899999999998743 2468999999999999999999999999999999999
Q ss_pred HHHHhccccc
Q 003469 625 KSALMTTTTK 634 (817)
Q Consensus 625 k~~L~~TA~~ 634 (817)
|++|++||++
T Consensus 246 ~~~L~~tA~~ 255 (255)
T cd04077 246 KARLLNLATK 255 (255)
T ss_pred HHHHHhhccC
Confidence 9999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=372.48 Aligned_cols=265 Identities=26% Similarity=0.321 Sum_probs=193.2
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCC----CCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVP----KYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
||+|||||||||++||+|.++...++..+. ..++..... +...-.++...... .+........
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~g~d~~~~~~~~~~~~~~~~----------~~~d~~~~~~~~~~---~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLPGYDFISDPAIANDGDGRDS----------DPTDPGDWVTGDDV---PPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccccCcccccCcccccCCCCCCC----------CCCCcccccccccc---cccccccCCC
Confidence 799999999999999999987544432221 000000000 00000000000000 0001112344
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH----------HcCC
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV----------HDGV 301 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~----------~~g~ 301 (817)
.+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ++.+++++|++|++ .+++
T Consensus 68 ~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~-~~~~~i~~a~~~a~~~~~~~~~~~~~~~ 138 (285)
T cd07496 68 SPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG-GTLSDIVDGMRWAAGLPVPGVPVNPNPA 138 (285)
T ss_pred CCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC-CcHHHHHHHHHHHhccCcCCCcccCCCC
Confidence 567899999999999975421 2468999999999999998764 47889999999998 4578
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcEEEEeeeecCcceeeEEEeCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
+|||||||..... ...+..++..+.++|++||+||||+|... ...++..+++|+|||++.
T Consensus 139 ~Iin~S~G~~~~~-------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------ 199 (285)
T cd07496 139 KVINLSLGGDGAC-------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------ 199 (285)
T ss_pred eEEEeCCCCCCCC-------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC------------
Confidence 9999999975321 35788899999999999999999999876 566778899999998521
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003469 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003469 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
.+.
T Consensus 200 -----------------------------------------------------------------------------~~~ 202 (285)
T cd07496 200 -----------------------------------------------------------------------------RGQ 202 (285)
T ss_pred -----------------------------------------------------------------------------CCC
Confidence 125
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCC-----CCCCccCCceEeecCccchhHHHHHHHHHHHHh
Q 003469 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGT-----DEANFVGEGFALISGTSMAAPHIAGIAALVKQK 615 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 615 (817)
++.||++|+.. ||+|||++|.++...... .........|..++|||||||+|||++|||+|+
T Consensus 203 ~~~~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~ 269 (285)
T cd07496 203 RASYSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSV 269 (285)
T ss_pred cccccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 78899999976 999999999988754321 011223457899999999999999999999999
Q ss_pred CCCCCHHHHHHHHhcc
Q 003469 616 HPYWSPAAIKSALMTT 631 (817)
Q Consensus 616 ~p~ls~~~ik~~L~~T 631 (817)
+|+|++++||++|++|
T Consensus 270 ~p~lt~~~v~~~L~~t 285 (285)
T cd07496 270 NPSLTPAQIESLLQST 285 (285)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=362.67 Aligned_cols=253 Identities=28% Similarity=0.387 Sum_probs=189.4
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||+|||++||+|.+... ...+|..+ .........|..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~-----------------------------~~~~~~~~--------~~~~~~~~~d~~ 43 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA-----------------------------QWADFDEN--------RRISATEVFDAG 43 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC-----------------------------CceeccCC--------CCCCCCCCCCCC
Confidence 79999999999999999987521 11111100 001123445788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003469 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
+|||||||||+|+... +...||||+|+|+.+|++.... +..+++++||+|+++++++|||||||.....
T Consensus 44 ~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~-~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 112 (254)
T cd07490 44 GHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGG-GSLSQIIAGMEWAVEKDADVVSMSLGGTYYS- 112 (254)
T ss_pred CcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCC-CcHHHHHHHHHHHHhCCCCEEEECCCcCCCC-
Confidence 9999999999997541 2367999999999999998754 7788999999999999999999999975431
Q ss_pred CCccCCCChHHHHHHHHHH-cCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCC
Q 003469 316 TTKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATH 394 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (817)
.+.+..+++.+.+ +|++||+||||+|......++..+++|+|||++.+......
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~------------------- 167 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF------------------- 167 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc-------------------
Confidence 4566677766665 69999999999998877778889999999997532210000
Q ss_pred CCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCC
Q 003469 395 GNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV 474 (817)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~ 474 (817)
..+
T Consensus 168 ------------------------s~~----------------------------------------------------- 170 (254)
T cd07490 168 ------------------------SSF----------------------------------------------------- 170 (254)
T ss_pred ------------------------cCC-----------------------------------------------------
Confidence 000
Q ss_pred CCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCC
Q 003469 475 SPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDF 554 (817)
Q Consensus 475 ~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~ 554 (817)
.......++.+|...+
T Consensus 171 ---------------------------------------------------------------g~~~~~~~~~~~~~~~- 186 (254)
T cd07490 171 ---------------------------------------------------------------GSSGASLVSAPDSPPD- 186 (254)
T ss_pred ---------------------------------------------------------------cccccccccCCCCCcc-
Confidence 0012222333444322
Q ss_pred CcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003469 555 SFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 555 ~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
...||||+|||.+|+++.... ..++.|..++|||||||+|||++|||+|++|+|++.|||.+|++||+
T Consensus 187 -----~~~~~d~~apG~~i~~~~~~~------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 -----EYTKPDVAAPGVDVYSARQGA------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred -----CCcCceEEeccCCeEccccCC------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 368999999999999965221 14568999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=363.80 Aligned_cols=240 Identities=32% Similarity=0.474 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. + +|+||+|||||+|||++||+|... ++...++|.+
T Consensus 20 ~~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~----------------------------~~~~~~~~~~------- 59 (260)
T cd07484 20 KAWDI----T-GGSGVTVAVVDTGVDPTHPDLLKV----------------------------KFVLGYDFVD------- 59 (260)
T ss_pred HHHhh----c-CCCCCEEEEEeCCCCCCCcccccC----------------------------CcccceeccC-------
Confidence 57776 2 999999999999999999998543 1222233322
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
....+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++....+...++++||+++++.|+
T Consensus 60 -----~~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 60 -----NDSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGA 126 (260)
T ss_pred -----CCCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 11235578899999999999864321 24689999999999999988767788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||... ....+..+++.+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 127 ~iin~S~g~~~--------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------ 186 (260)
T cd07484 127 KVINLSLGGGL--------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------ 186 (260)
T ss_pred eEEEecCCCCC--------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------
Confidence 99999999753 3457888899999999999999999999888888899999999985311
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
+.+
T Consensus 187 -----------------------------------------------------------------------------~~~ 189 (260)
T cd07484 187 -----------------------------------------------------------------------------DKR 189 (260)
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 156
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++|+.. |++|||.+|+++.+ .+.|..++|||||||+|||++|||+|++| |++
T Consensus 190 ~~~s~~g~~~-------------~~~apG~~i~~~~~----------~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~ 245 (260)
T cd07484 190 ASFSNYGKWV-------------DVSAPGGGILSTTP----------DGDYAYMSGTSMATPHVAGVAALLYSQGP-LSA 245 (260)
T ss_pred CCcCCCCCCc-------------eEEeCCCCcEeecC----------CCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999875 89999999999873 35799999999999999999999999999 999
Q ss_pred HHHHHHHhcccccc
Q 003469 622 AAIKSALMTTTTKL 635 (817)
Q Consensus 622 ~~ik~~L~~TA~~~ 635 (817)
.+||++|++||+++
T Consensus 246 ~~i~~~L~~tA~~~ 259 (260)
T cd07484 246 SEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=365.44 Aligned_cols=157 Identities=26% Similarity=0.335 Sum_probs=118.8
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|+. +++|+||+|||||||||..|| |.... +.+. .. +..
T Consensus 12 ~~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~---------~~~~---------------~~----~~~------- 51 (298)
T cd07494 12 RVHQR----GITGRGVRVAMVDTGFYAHPF-FESRG---------YQVR---------------VV----LAP------- 51 (298)
T ss_pred HHHhc----CCCCCCcEEEEEeCCCcCCch-hhcCC---------ccce---------------ee----cCC-------
Confidence 56665 799999999999999999998 76541 1110 00 000
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
.......|++||||||||++ .||||+|+|+.+|++.+ ..+++++||+||+++|+
T Consensus 52 ----~~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~----~~~~~~~ai~~a~~~g~ 105 (298)
T cd07494 52 ----GATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP----DLVNSVGAFKKAISLSP 105 (298)
T ss_pred ----CCCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC----CcHHHHHHHHHHHhcCC
Confidence 01123467889999999863 57999999999999865 35678999999999999
Q ss_pred cEEEecCCCCCCCCC--C---ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeee
Q 003469 302 DILSLSVGPNSPPAT--T---KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367 (817)
Q Consensus 302 dVIn~SlG~~~~~~~--~---~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~ 367 (817)
+|||||||....... + .......+..++++|.++|++||+||||++. .+|+..|++|+|||+.
T Consensus 106 dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~ 173 (298)
T cd07494 106 DIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVF 173 (298)
T ss_pred CEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEe
Confidence 999999998543211 0 0112346888999999999999999999974 4688999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=369.36 Aligned_cols=148 Identities=28% Similarity=0.430 Sum_probs=111.3
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||+|||.+||+|.+... ...+|.+ ...
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------------~~~~~~~-------------~~~ 41 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------------TTKSFVG-------------GED 41 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------------cCcccCC-------------CCC
Confidence 6999999999999999999999997621 1112211 112
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
+.|.+||||||||||+|+... +...||||+|+|+.+|++.....+...++++||+||++.|++|||||||.
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~ 112 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGA 112 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCC
Confidence 457899999999999997542 23479999999999999987767778889999999999999999999998
Q ss_pred CCC------CCCCccCCCChHHHHHHHH---------------HHcCceEEEecCCCCCCC
Q 003469 311 NSP------PATTKTTFLNPFDVTLLAA---------------VKAGVFVAQAAGNGGPFP 350 (817)
Q Consensus 311 ~~~------~~~~~~~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~ 350 (817)
... +... ......++...+.+ .++|++||+||||+|...
T Consensus 113 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 113 DFPGLVDQGWPPG-LAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCcccccccCCCC-chhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 541 1111 11222344444444 679999999999998653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.55 Aligned_cols=278 Identities=25% Similarity=0.303 Sum_probs=201.0
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCC
Q 003469 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (817)
Q Consensus 150 ~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (817)
.+++|+||+|||||||||++||+|.+.... ...+.++++.....+. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------------~~~~~~~~~~~~~~~~---------------~ 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------------KTNLFHRKIVRYDSLS---------------D 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC------------------cCccCcccEEEeeccC---------------C
Confidence 479999999999999999999999875210 0011223344333321 1
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC-CCHHHHHHHHHHHHHcCCcEEEecC
Q 003469 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-GFVADVVAAIDQAVHDGVDILSLSV 308 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~-~~~~di~~ai~~a~~~g~dVIn~Sl 308 (817)
...|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... ....++..+++++.+.+++||||||
T Consensus 49 ~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~ 123 (293)
T cd04842 49 TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSW 123 (293)
T ss_pred CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccC
Confidence 1227899999999999997643210 114689999999999999887542 4456689999999999999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHH-H-cCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469 309 GPNSPPATTKTTFLNPFDVTLLAAV-K-AGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
|..... .......++.++. + +|++||+||||+|.... ..++..+++|+|||++......
T Consensus 124 G~~~~~------~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------- 187 (293)
T cd04842 124 GSPVNN------GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------- 187 (293)
T ss_pred CCCCcc------ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------
Confidence 986432 1234445555444 3 79999999999998765 5677899999999975332100
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.....+.++.
T Consensus 194 ----------------------------------------------------------------------~~~~~~~~~~ 203 (293)
T cd04842 194 ----------------------------------------------------------------------QSDNSDTVAS 203 (293)
T ss_pred ----------------------------------------------------------------------ccCCCCcccc
Confidence 0011237899
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC------
Q 003469 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP------ 617 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------ 617 (817)
||++||+.++ ++||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 204 ~S~~G~~~~~-------~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~ 275 (293)
T cd04842 204 FSSRGPTYDG-------RIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPT 275 (293)
T ss_pred ccCcCCCCCC-------CcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 9999999876 999999999999999864421 01111346899999999999999999999999854
Q ss_pred --CCCHHHHHHHHhcccc
Q 003469 618 --YWSPAAIKSALMTTTT 633 (817)
Q Consensus 618 --~ls~~~ik~~L~~TA~ 633 (817)
.+++.++|++|++||+
T Consensus 276 ~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 276 KFNPSAALLKALLINSAR 293 (293)
T ss_pred CcCcCHHHHHHHHHhcCC
Confidence 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=357.43 Aligned_cols=241 Identities=29% Similarity=0.439 Sum_probs=192.2
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003469 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 157 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
|+|||||+|||++||+|.+.. ++...+++.. +..++.|..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------------~~~~~~~~~~------------~~~~~~~~~~ 41 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------------KLVPGWNFVS------------NNDPTSDIDG 41 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------------CccCCccccC------------CCCCCCCCCC
Confidence 689999999999999999741 0111111111 1123457889
Q ss_pred CCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCC
Q 003469 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPAT 316 (817)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~ 316 (817)
|||||||||+|+..+. ..+.||||+|+|+.+|++.....+..+++.++++|+++.+++|||||||......
T Consensus 42 HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~- 112 (242)
T cd07498 42 HGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE- 112 (242)
T ss_pred CHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc-
Confidence 9999999999975321 2468999999999999998766667888999999999999999999999754422
Q ss_pred CccCCCChHHHHHHHHHH-cCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCC
Q 003469 317 TKTTFLNPFDVTLLAAVK-AGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHG 395 (817)
Q Consensus 317 ~~~~~~~~~~~a~~~a~~-~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (817)
.+...+..++..+++ +|+++|+||||+|......++..+++|+|||++.
T Consensus 113 ---~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------- 162 (242)
T cd07498 113 ---SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------- 162 (242)
T ss_pred ---hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------
Confidence 245678888888888 9999999999999887767888999999998531
Q ss_pred CceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC
Q 003469 396 NRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (817)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~ 475 (817)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCCC
Q 003469 476 PGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFS 555 (817)
Q Consensus 476 ~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~ 555 (817)
.+.++.||+|||..
T Consensus 163 --------------------------------------------------------------~~~~~~~s~~g~~~---- 176 (242)
T cd07498 163 --------------------------------------------------------------NDARASYSNYGNYV---- 176 (242)
T ss_pred --------------------------------------------------------------CCCccCcCCCCCCe----
Confidence 11567899999976
Q ss_pred cCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003469 556 FQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 556 ~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
|++|||.++.+....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 ---------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ---------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ---------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999887543211 111245688999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=358.97 Aligned_cols=249 Identities=21% Similarity=0.220 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|+... .+|+||+|+|||+|||.+||||.++.... .+
T Consensus 6 ~aw~~~~---g~G~gV~VaviDtGid~~Hpdl~~~~~~~-----------------------------~~---------- 43 (277)
T cd04843 6 YAWTKPG---GSGQGVTFVDIEQGWNLNHEDLVGNGITL-----------------------------IS---------- 43 (277)
T ss_pred HHHHhcC---CCCCcEEEEEecCCCCCCChhhccccccc-----------------------------cC----------
Confidence 5677642 45899999999999999999999762100 00
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH---
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH--- 298 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~--- 298 (817)
...+.|+++|||||||||+|..+. . ++.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 ------~~~~~d~~gHGT~VAGiIaa~~n~--------~-G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~ 102 (277)
T cd04843 44 ------GLTDQADSDHGTAVLGIIVAKDNG--------I-GVTGIAHGAQAAVVSSTR------VSNTADAILDAADYLS 102 (277)
T ss_pred ------CCCCCCCCCCcchhheeeeeecCC--------C-ceeeeccCCEEEEEEecC------CCCHHHHHHHHHhccC
Confidence 011457889999999999996421 1 368999999999999986 2345666666666
Q ss_pred -cCCcEEEecCCCCCCCCCC-ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc------------c-CCCCcEEEE
Q 003469 299 -DGVDILSLSVGPNSPPATT-KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL------------V-SYSPWITTV 363 (817)
Q Consensus 299 -~g~dVIn~SlG~~~~~~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~------------~-~~~~~vitV 363 (817)
.++.+||||||........ .......+..+++++.++|++||+||||++...... + ...+++|+|
T Consensus 103 ~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~V 182 (277)
T cd04843 103 PGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMV 182 (277)
T ss_pred CCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEE
Confidence 3566799999985321110 011334566788999999999999999998752111 0 012356666
Q ss_pred eeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEeccc
Q 003469 364 AAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSF 443 (817)
Q Consensus 364 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~ 443 (817)
||+..+
T Consensus 183 gA~~~~-------------------------------------------------------------------------- 188 (277)
T cd04843 183 GAGSST-------------------------------------------------------------------------- 188 (277)
T ss_pred EeccCC--------------------------------------------------------------------------
Confidence 553200
Q ss_pred ccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeee
Q 003469 444 NFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGT 523 (817)
Q Consensus 444 ~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 523 (817)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhH
Q 003469 524 GTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAP 603 (817)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 603 (817)
....++.||++||.. ||+|||++|+++..........+..+.|..++|||||||
T Consensus 189 -------------~~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP 242 (277)
T cd04843 189 -------------TGHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASP 242 (277)
T ss_pred -------------CCCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecccchhhH
Confidence 001378999999976 999999999999864322112223345688999999999
Q ss_pred HHHHHHHHHHH----h-CCCCCHHHHHHHHhcccc
Q 003469 604 HIAGIAALVKQ----K-HPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 604 ~VAG~aALl~q----~-~p~ls~~~ik~~L~~TA~ 633 (817)
||||++|||++ + +|+|+++|||++|++|+.
T Consensus 243 ~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 243 IVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=351.92 Aligned_cols=250 Identities=30% Similarity=0.398 Sum_probs=191.0
Q ss_pred CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcc---cccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 155 EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGK---CEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 155 ~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
+||+|||||||||++||+|.++ .|... +..+........ -....+++| ..+..++
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~ 59 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN---------MWVNPGEIPGNGIDDDGNGY-VDDIYGWNF------------VNNDNDP 59 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc---------cccCcccccccCcccCCCCc-ccCCCcccc------------cCCCCCC
Confidence 6899999999999999999987 23211 111100000000 000111111 1123456
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
.|..+|||||||||+|+.... ..+.||||+|+|+.+|++...+.++..+++++++++++.+++|||+|||..
T Consensus 60 ~d~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~ 131 (259)
T cd07473 60 MDDNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGG 131 (259)
T ss_pred CCCCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC
Confidence 788999999999999975422 246899999999999999887667888999999999999999999999975
Q ss_pred CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC---CCccC--CCCcEEEEeeeecCcceeeEEEeCCCcEEEe
Q 003469 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP---KTLVS--YSPWITTVAAAIDDRRYKNHLNLGNGKILAG 386 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~--~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 386 (817)
.. ...+..++.++.++|++||+||||+|... ..++. ..+++|+||+.+.
T Consensus 132 ~~--------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------ 185 (259)
T cd07473 132 GP--------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------ 185 (259)
T ss_pred CC--------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------
Confidence 32 45788889999999999999999998762 23333 3467888877421
Q ss_pred eecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceE
Q 003469 387 IGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAG 466 (817)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~ 466 (817)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccC
Q 003469 467 FVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546 (817)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS 546 (817)
.+.++.||+
T Consensus 186 -----------------------------------------------------------------------~~~~~~~s~ 194 (259)
T cd07473 186 -----------------------------------------------------------------------NDALASFSN 194 (259)
T ss_pred -----------------------------------------------------------------------CCCcCcccC
Confidence 125667899
Q ss_pred CCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003469 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKS 626 (817)
Q Consensus 547 ~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~ 626 (817)
+||. +||+.|||.++++.. .++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 195 ~g~~------------~~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~ 252 (259)
T cd07473 195 YGKK------------TVDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKD 252 (259)
T ss_pred CCCC------------CcEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9975 349999999999965 456899999999999999999999999999999999999
Q ss_pred HHhcccc
Q 003469 627 ALMTTTT 633 (817)
Q Consensus 627 ~L~~TA~ 633 (817)
+|++||+
T Consensus 253 ~L~~tA~ 259 (259)
T cd07473 253 AILSSAD 259 (259)
T ss_pred HHHHhCC
Confidence 9999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=346.69 Aligned_cols=227 Identities=33% Similarity=0.516 Sum_probs=187.8
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||+||+++||+|.+.. ...++|... ......|..
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~-----------------------------~~~~~~~~~-----------~~~~~~~~~ 40 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI-----------------------------VGGANFTGD-----------DNNDYQDGN 40 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc-----------------------------cCcccccCC-----------CCCCCCCCC
Confidence 7999999999999999998751 111222111 002445788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003469 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
+|||||||||++..... .+.|+||+|+|+.+|++...+.+..++++++++++++.|++|||||||...
T Consensus 41 ~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~--- 108 (229)
T cd07477 41 GHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS--- 108 (229)
T ss_pred CCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC---
Confidence 99999999999975321 468999999999999998876677789999999999999999999999742
Q ss_pred CCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc--cCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCC
Q 003469 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPAT 393 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (817)
....+..+++.+.++|+++|+||||++...... ++..+++|+||+++.+
T Consensus 109 -----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 109 -----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 234677888899999999999999999876654 7888999999985311
Q ss_pred CCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003469 394 HGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCC
Q 003469 474 VSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKD 553 (817)
Q Consensus 474 ~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~ 553 (817)
+.++.||++|+..
T Consensus 160 -----------------------------------------------------------------~~~~~~s~~g~~~-- 172 (229)
T cd07477 160 -----------------------------------------------------------------NNRASFSSTGPEV-- 172 (229)
T ss_pred -----------------------------------------------------------------CCcCCccCCCCCc--
Confidence 1566789999875
Q ss_pred CCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003469 554 FSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 554 ~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
|+.|||.+|+++. ..+.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 173 -----------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 -----------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999987 34678999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=350.27 Aligned_cols=160 Identities=22% Similarity=0.264 Sum_probs=119.5
Q ss_pred CCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCC
Q 003469 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLD 233 (817)
Q Consensus 154 G~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D 233 (817)
|++|+|||||||||++||+|.++.. .+++|..... +.........|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~-----------------------------~~~~~~~~~~-----~~~~~~~~~~d 47 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII-----------------------------GGKSFSPYEG-----DGNKVSPYYVS 47 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc-----------------------------cCCCCCCCCC-----CcccCCCCCCC
Confidence 7899999999999999999997511 1111111100 00000112246
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC------CCCHHHHHHHHHHHHHcCCcEEEec
Q 003469 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF------GGFVADVVAAIDQAVHDGVDILSLS 307 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~------~~~~~di~~ai~~a~~~g~dVIn~S 307 (817)
+.||||||||||+| +||+|+|+.+|++...+ .+....+++||+||+++|+||||||
T Consensus 48 ~~gHGT~vAgiI~g------------------vap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S 109 (247)
T cd07491 48 ADGHGTAMARMICR------------------ICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMS 109 (247)
T ss_pred CCCcHHHHHHHHHH------------------HCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEee
Confidence 88999999999864 79999999999998654 2456789999999999999999999
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-C--ccCCCCcEEEEeeee
Q 003469 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-T--LVSYSPWITTVAAAI 367 (817)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~--~~~~~~~vitVgA~~ 367 (817)
||....... ......+..++++|.++|++||+||||+|.... + .++..+++|+|||++
T Consensus 110 ~g~~~~~~~--~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 110 WTIKKPEDN--DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeccccccc--ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 997543110 123567899999999999999999999998754 3 345678999999853
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=357.05 Aligned_cols=156 Identities=25% Similarity=0.334 Sum_probs=110.2
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
.|+|||||||||++||+|.+......... .....+.. .......+.....|..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~----------------------~~~~~~~~-----~~~~~~~~~~~~~d~~ 53 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNL----------------------VPKGGYDG-----KEAGETGDINDIVDKL 53 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccccc----------------------ccCCCcCC-----ccccccCCCCcCCCCC
Confidence 38999999999999999997521111000 00000000 0000011123456789
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003469 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
||||||||||+|+.. ..||||+|+|+.+|+++........++++||++|++++++|||||||......
T Consensus 54 gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 54 GHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred CcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 999999999999742 35999999999999998765567889999999999999999999999754322
Q ss_pred CC---ccCCCChHHHHHHHHHHcCceEEEecCCCCCCC
Q 003469 316 TT---KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350 (817)
Q Consensus 316 ~~---~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~ 350 (817)
.. .....+.+..+++.+.++|++||+||||+|...
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 11 011234577788888899999999999998753
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=358.90 Aligned_cols=276 Identities=35% Similarity=0.531 Sum_probs=208.1
Q ss_pred EEEEecceecCCCCCCC-CCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003469 158 VIGFVDSGIYPHHPSFG-SHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 158 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
+|||||||||++||+|. ++- ...++.+.+.|.+.. .......|..+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~------------------------~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 47 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF------------------------IWSKVPGGYNFVDGN---------PNPSPSDDDNG 47 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE------------------------EEEEEEEEEETTTTB---------STTTSSSTSSS
T ss_pred CEEEEcCCcCCCChhHccCCc------------------------ccccccceeeccCCC---------CCcCccccCCC
Confidence 69999999999999999 540 112344556665431 11234567889
Q ss_pred CCccchhhhccCC-CccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH-HcCCcEEEecCCCCCCC
Q 003469 237 HGSHTAAIAAGNN-GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSVGPNSPP 314 (817)
Q Consensus 237 HGThVAGiiag~~-~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~-~~g~dVIn~SlG~~~~~ 314 (817)
|||||||||+|.. ..+ ....||||+|+|+.+|++...+ ....++++++++++ +.+++|||||||.....
T Consensus 48 HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~~-~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 48 HGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNSG-GTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTTS-EEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred ccchhhhhccccccccc--------cccccccccccccccccccccc-cccccccchhhhhhhccCCccccccccccccc
Confidence 9999999999985 211 2458999999999999987654 67788999999999 88999999999873311
Q ss_pred CCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC---CccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeecCC
Q 003469 315 ATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLSP 391 (817)
Q Consensus 315 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (817)
+. ....+.+..+++.+.++|+++|+||||+|.... ..++..+++|+||++...
T Consensus 119 ~~--~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 119 PD--PSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SH--SHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc--cccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 112334667778899999999999999987654 345667888999875310
Q ss_pred CCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEee
Q 003469 392 ATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAV 471 (817)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~ 471 (817)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCC
Q 003469 472 ENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (817)
Q Consensus 472 ~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~ 551 (817)
+.++.||++|+..
T Consensus 175 -------------------------------------------------------------------~~~~~~s~~g~~~ 187 (282)
T PF00082_consen 175 -------------------------------------------------------------------GQPASYSNYGGPS 187 (282)
T ss_dssp -------------------------------------------------------------------SSBSTTSSBSTTE
T ss_pred -------------------------------------------------------------------ccccccccccccc
Confidence 1567899997654
Q ss_pred CCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Q 003469 552 KDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTT 631 (817)
Q Consensus 552 ~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~T 631 (817)
.. .++||||+|||.+|.++++.. ....|..++|||||||+|||++|||+|++|+|++.+||.+|++|
T Consensus 188 ~~------~~~~~di~a~G~~i~~~~~~~-------~~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~t 254 (282)
T PF00082_consen 188 DD------GRIKPDIAAPGGNILSAVPGS-------DRGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINT 254 (282)
T ss_dssp TT------CTTCEEEEEECSSEEEEETTT-------ESEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred cc------ccccccccccccccccccccc-------ccccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 21 389999999999999888532 11458889999999999999999999999999999999999999
Q ss_pred ccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 632 TTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 632 A~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|.++.... .......||||++|+.+|++
T Consensus 255 a~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 255 ADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp SBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred CcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 99986211 12334578999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=335.30 Aligned_cols=150 Identities=25% Similarity=0.245 Sum_probs=116.6
Q ss_pred ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCC
Q 003469 156 DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD 235 (817)
Q Consensus 156 GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 235 (817)
||+|||||||||++||+|.+..... +.+... +...+.....|..
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~d~~ 44 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG-----------------------------EVTIDL-------EIIVVSAEGGDKD 44 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc-----------------------------cccccc-------ccccCCCCCCCCC
Confidence 7999999999999999999862110 000000 0001123455788
Q ss_pred CCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCC
Q 003469 236 GHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPA 315 (817)
Q Consensus 236 gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~ 315 (817)
||||||||||++. +|+++|+.+|+++..+.+..+++++||+|++++|++|||||||.....
T Consensus 45 gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~- 105 (222)
T cd07492 45 GHGTACAGIIKKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR- 105 (222)
T ss_pred CcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-
Confidence 9999999999884 599999999999887667888999999999999999999999975321
Q ss_pred CCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeee
Q 003469 316 TTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366 (817)
Q Consensus 316 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~ 366 (817)
....+..+++++.++|+++|+||||++.... .|+..+++|+|++.
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~ 150 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSD 150 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEec
Confidence 2346788889999999999999999987543 36778899999874
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=350.22 Aligned_cols=250 Identities=23% Similarity=0.226 Sum_probs=179.0
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|+|||||||++||+|.+.... ...++|...
T Consensus 30 ~~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------------~~~~~~~~~------ 72 (297)
T cd04059 30 PAWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------------EASYDFNDN------ 72 (297)
T ss_pred HHHhC----CCCCcceEEEEEeCCcccCCHhHhhcccc---------------------------cccccccCC------
Confidence 46665 69999999999999999999999976210 011112111
Q ss_pred CCCCCCCCCC--CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc
Q 003469 222 FNPAVDFASP--LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD 299 (817)
Q Consensus 222 ~~~~~~~~~~--~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~ 299 (817)
.....+ .|..||||||||||+|+.... ....||||+|+|+.+|++... .....+..++.++.+
T Consensus 73 ----~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ----DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ----CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 001112 278899999999999975321 135899999999999998764 333345566665554
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHH-----cCceEEEecCCCCCCCCC----ccCCCCcEEEEeeeecCc
Q 003469 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGNGGPFPKT----LVSYSPWITTVAAAIDDR 370 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~~~vitVgA~~~~~ 370 (817)
.++|||||||........ ......+..++.++.+ +|++||+||||+|..... .....+++|+|||++.
T Consensus 138 ~~~Vin~S~g~~~~~~~~-~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~-- 214 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTV-DGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA-- 214 (297)
T ss_pred CceEEECCCCCCCCCCcc-CCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC--
Confidence 469999999976432210 1123345555665554 699999999999983222 1245678888887531
Q ss_pred ceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc
Q 003469 371 RYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA 450 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~ 450 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCC
Q 003469 451 SIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGL 530 (817)
Q Consensus 451 ~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCc-------EEEeeCCCCCCCCCccCCceEeecCccchhH
Q 003469 531 MPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSL-------IWAAWSPNGTDEANFVGEGFALISGTSMAAP 603 (817)
Q Consensus 531 ~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP 603 (817)
.+.++.||++|+.. +++|||.. |+++.... ....|..++|||||||
T Consensus 215 -------~g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 215 -------NGVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred -------CCCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 12567889999876 78899877 66665321 1356789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcccc
Q 003469 604 HIAGIAALVKQKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 604 ~VAG~aALl~q~~p~ls~~~ik~~L~~TA~ 633 (817)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=337.16 Aligned_cols=248 Identities=32% Similarity=0.408 Sum_probs=188.3
Q ss_pred CCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCC
Q 003469 153 AGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPL 232 (817)
Q Consensus 153 tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (817)
+|+||+|||||+||+.+||+|.+...... . +.. ..........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------~--------------------~~~--------~~~~~~~~~~ 43 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------Y--------------------YVA--------VNDAGYASNG 43 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------c--------------------ccc--------cccccCCCCC
Confidence 69999999999999999999998621110 0 000 0000012345
Q ss_pred CCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC-CCCHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003469 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF-GGFVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 233 D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~-~~~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
|..+|||||||||+|+... ..+.|+||+|+|+.+|+++... ......+.++++++++.+++|||||||..
T Consensus 44 ~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~ 114 (267)
T cd04848 44 DGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN 114 (267)
T ss_pred CCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC
Confidence 7889999999999998542 2468999999999999998764 45667789999999999999999999986
Q ss_pred CCCCCC-------ccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCc---------cCCCCcEEEEeeeecCcceeeE
Q 003469 312 SPPATT-------KTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL---------VSYSPWITTVAAAIDDRRYKNH 375 (817)
Q Consensus 312 ~~~~~~-------~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---------~~~~~~vitVgA~~~~~~~~~~ 375 (817)
...... .......+..++..+.++|+++|+||||++...... +...+++|+||+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~----- 189 (267)
T cd04848 115 PAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG----- 189 (267)
T ss_pred CcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-----
Confidence 532210 012456777888899999999999999998754332 23456788888753211
Q ss_pred EEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHH
Q 003469 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKV 455 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~ 455 (817)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccccc
Q 003469 456 SETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILH 535 (817)
Q Consensus 456 ~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (817)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccc--ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003469 536 KSAPQVAL--FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 536 ~~~~~~a~--fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
.... ||++|+... .++++|||.+|.++.+. .+..|..++|||||||+|||++|||+
T Consensus 190 ----~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al~~ 247 (267)
T cd04848 190 ----TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAALLA 247 (267)
T ss_pred ----Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHHHH
Confidence 2222 488887543 34799999999998742 14578899999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhcccc
Q 003469 614 QKHPYWSPAAIKSALMTTTT 633 (817)
Q Consensus 614 q~~p~ls~~~ik~~L~~TA~ 633 (817)
|++|+++++|||++|++||+
T Consensus 248 ~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 248 QKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=323.60 Aligned_cols=263 Identities=25% Similarity=0.382 Sum_probs=208.2
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
|+||++|+|||.|||+.-+||.|+.-- . ..++.+ ...
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnvK-----------E-------------------RTNWTN-------------E~t 233 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNVK-----------E-------------------RTNWTN-------------EDT 233 (1033)
T ss_pred cccCCceEEEEeecccccCCccccchh-----------h-------------------hcCCcC-------------ccc
Confidence 899999999999999999999999630 0 001111 012
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecCCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGP 310 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~SlG~ 310 (817)
-.|.-||||.|||+|||.. ...|.||+++|++.|||.+..-.+++.+++|+.||+..++||+|+|+|+
T Consensus 234 LdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGG 301 (1033)
T KOG4266|consen 234 LDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGG 301 (1033)
T ss_pred cccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCC
Confidence 3467899999999999975 3579999999999999998767899999999999999999999999998
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCC--CCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY--SPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~--~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
+ .+.+.++-.-+..+....|++|.|+||+|+-.++..+. -..||.||..
T Consensus 302 P-------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI---------------------- 352 (1033)
T KOG4266|consen 302 P-------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI---------------------- 352 (1033)
T ss_pred c-------ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc----------------------
Confidence 6 34566887778888889999999999999976655332 2233434321
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+-.+.++.|||||
T Consensus 353 -------------------------------------------------------------------dfdD~IA~FSSRG 365 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------DFDDHIASFSSRG 365 (1033)
T ss_pred -------------------------------------------------------------------cccchhhhhccCC
Confidence 1123899999999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH----hCCCCCHHHH
Q 003469 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ----KHPYWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~i 624 (817)
-+.. +-|-+-+|+||||++-|.+|..... ..+...+||||.|+|.|||+++||.+ +.--++|+-+
T Consensus 366 MtTW-ELP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASm 434 (1033)
T KOG4266|consen 366 MTTW-ELPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASM 434 (1033)
T ss_pred ccee-ecCCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccCHHHH
Confidence 7643 1234557999999999999987652 34668999999999999999999977 2334699999
Q ss_pred HHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 625 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|.+|+..|.+++... -+.||+|++|+.++++
T Consensus 435 KQaLiegA~kLpg~N--------------------MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 435 KQALIEGAAKLPGPN--------------------MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred HHHHHhHHhhCCCCc--------------------hhhccCcchhHHHHHH
Confidence 999999999986432 2689999999999876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=312.16 Aligned_cols=364 Identities=23% Similarity=0.288 Sum_probs=226.9
Q ss_pred CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHHHHHHHcCCcEEEecCCCC
Q 003469 234 GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAIDQAVHDGVDILSLSVGPN 311 (817)
Q Consensus 234 ~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai~~a~~~g~dVIn~SlG~~ 311 (817)
...||||||||++||.... ....||||+|+|+.+++-+..-+. +...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3469999999999997543 246799999999999997643222 233589999999999999999999998
Q ss_pred CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccC---CCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVS---YSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
..+++. -..++.+-+.+-++|+++|.||||.|+...++++ ....+|.|||.....+....
T Consensus 381 a~~pn~----GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------- 443 (1304)
T KOG1114|consen 381 AHLPNS----GRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------- 443 (1304)
T ss_pred CCCCCc----chHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh-------------
Confidence 777653 2334333333446899999999999998776653 44588999985322210000
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 444 -------------------------------------------------------------------------------- 443 (1304)
T KOG1114|consen 444 -------------------------------------------------------------------------------- 443 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
+. ......+....+||||
T Consensus 444 ---------------------------------y~-----------------------------~~e~vp~~~YtWsSRg 461 (1304)
T KOG1114|consen 444 ---------------------------------YS-----------------------------VREPVPSNPYTWSSRG 461 (1304)
T ss_pred ---------------------------------hh-----------------------------hhccCCCCccccccCC
Confidence 00 0001122577899999
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHh----CCCCCHHHH
Q 003469 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQK----HPYWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~ls~~~i 624 (817)
|+.|| -+--.|+|||+.|.|. |.. .-..-..|+|||||+|+++|.+|||++. +-.|||.-|
T Consensus 462 P~~DG-------~lGVsi~APggAiAsV-P~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysV 526 (1304)
T KOG1114|consen 462 PCLDG-------DLGVSISAPGGAIASV-PQY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSV 526 (1304)
T ss_pred CCcCC-------CcceEEecCCccccCC-chh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHH
Confidence 99998 6777899999998763 221 2234478999999999999999999764 678999999
Q ss_pred HHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeeeecCchhhhhcc-ccCCCCC-ceee
Q 003469 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFL-CTTPGID-IHEI 702 (817)
Q Consensus 625 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~-~~~~~~~-~~~i 702 (817)
|.+|++||.+++.- .++.||.|++++.+|.+--.-.+..+..-+.|+ ...+. + ...|
T Consensus 527 rrAlenTa~~l~~i--------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f~~v~VgN-~~srGI 585 (1304)
T KOG1114|consen 527 RRALENTATKLGDI--------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGFINVNVGN-SCSRGI 585 (1304)
T ss_pred HHHHHhcccccCcc--------------------chhccCcceeehhHHHHHHHHhhhcCCccceeEEEeecc-ccccce
Confidence 99999999998642 357999999999999862111111111111110 00000 0 0011
Q ss_pred ecccCcccCCCCCCCCcCCCCcEEEeeecceEEEEEEEEEcCCCceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEE
Q 003469 703 RNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTL 782 (817)
Q Consensus 703 ~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~n~~~~~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~ 782 (817)
....+..|. .|.+.+ |.+. -.|.--..|..+...|.+.........+.-.|+.+-+ .++.+.+.|++
T Consensus 586 yLRep~~~~----~p~e~~---i~Ve-----PiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l-~~~~R~i~VrV 652 (1304)
T KOG1114|consen 586 YLREPTQVC----SPSEHT---IGVE-----PIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML-ANQGRGINVRV 652 (1304)
T ss_pred EecCCcccC----Cccccc---eecc-----ccccCccccccccccceeeEeeecCCcceeCchhhee-ccCCceeEEEE
Confidence 100010000 000000 0000 0000001111011233333222222223333666666 78899999999
Q ss_pred EEecCCCc----eEEEEEEEEeCCCcEEEEeEEEE
Q 003469 783 TVRSVTGT----YSFGEICMKGSRGHKVNIPVIAQ 813 (817)
Q Consensus 783 ~~~~~~~~----~~~G~i~~~~~~~~~l~iP~~~~ 813 (817)
++...... .+-||-+-..+.++.++||+.|.
T Consensus 653 Dpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi 687 (1304)
T KOG1114|consen 653 DPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVI 687 (1304)
T ss_pred CCcCCCCCcceEEEEEeecCCcccCceEEeeeEEE
Confidence 99765443 34577666667789999999764
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=287.72 Aligned_cols=118 Identities=16% Similarity=0.046 Sum_probs=85.0
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHH--HHcCCcEEEecC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQA--VHDGVDILSLSV 308 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a--~~~g~dVIn~Sl 308 (817)
..|+++|||||||||||. .|++|+|+|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 347899999999999997 35679999987555221 223466777777 567999999999
Q ss_pred CCCCCCCCC-ccCCCChHHHHHHHHHHc-CceEEEecCCCCCCC-----CCccCCCCcEEEEeeee
Q 003469 309 GPNSPPATT-KTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFP-----KTLVSYSPWITTVAAAI 367 (817)
Q Consensus 309 G~~~~~~~~-~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~-----~~~~~~~~~vitVgA~~ 367 (817)
|........ .....+.+..+++.+.++ |+++|+||||+|... ...++.++++|+|||++
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d 159 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTD 159 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEec
Confidence 986443210 001123567778877766 999999999999853 23355788999999864
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-31 Score=273.50 Aligned_cols=123 Identities=35% Similarity=0.469 Sum_probs=101.6
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH-HcCCcEEEecC
Q 003469 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSV 308 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~-~~g~dVIn~Sl 308 (817)
...|..+||||||++|++..... ...|+||+++|+.+|+...........+++|+++++ +.+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 34568899999999999975432 127999999999999998765567788999999999 89999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHHHc-CceEEEecCCCCCCCC---CccCCCCcEEEEeeee
Q 003469 309 GPNSPPATTKTTFLNPFDVTLLAAVKA-GVFVAQAAGNGGPFPK---TLVSYSPWITTVAAAI 367 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~---~~~~~~~~vitVgA~~ 367 (817)
|..... ....+..++.++.++ |+++|+||||.+.... ..++..+++|+||+++
T Consensus 110 g~~~~~------~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~ 166 (241)
T cd00306 110 GGPGSP------PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVD 166 (241)
T ss_pred CCCCCC------CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecC
Confidence 985432 234677888888888 9999999999998776 4677889999999864
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=245.28 Aligned_cols=243 Identities=31% Similarity=0.445 Sum_probs=183.3
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|+|||+||+..||+|.+.... .++|.... ....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~-----------------------------~~~~~~~~----------~~~~ 178 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVA-----------------------------GGDFVDGD----------PEPP 178 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhccccc-----------------------------ccccccCC----------CCCC
Confidence 58999999999999999999999986210 01221110 0002
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecC-CCCCHHHHHHHHHHHHHcC--CcEEEec
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL-FGGFVADVVAAIDQAVHDG--VDILSLS 307 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~-~~~~~~di~~ai~~a~~~g--~dVIn~S 307 (817)
..|.++|||||+|++++.... +.....|+||+++++.+|++... +.+..++++.+++++.+.+ +++||||
T Consensus 179 ~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s 251 (508)
T COG1404 179 FLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLS 251 (508)
T ss_pred CCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEec
Confidence 468899999999999994210 01136899999999999999876 5677888899999999999 9999999
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHHHHcC-ceEEEecCCCCCCCCC----ccCCC--CcEEEEeeeecCcceeeEEEeCC
Q 003469 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAG-VFVAQAAGNGGPFPKT----LVSYS--PWITTVAAAIDDRRYKNHLNLGN 380 (817)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~~--~~vitVgA~~~~~~~~~~~~~~~ 380 (817)
+|.. .. ......+..++..++..| +++|+|+||+|..... .+... +.+++|+|..
T Consensus 252 ~g~~-~~----~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~------------- 313 (508)
T COG1404 252 LGGS-LS----DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD------------- 313 (508)
T ss_pred CCCC-cc----ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC-------------
Confidence 9975 11 124557788888888888 9999999999876521 12211 2444444421
Q ss_pred CcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHH
Q 003469 381 GKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAK 460 (817)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~ 460 (817)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCc
Q 003469 461 SLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQ 540 (817)
Q Consensus 461 ~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (817)
..+.
T Consensus 314 ----------------------------------------------------------------------------~~~~ 317 (508)
T COG1404 314 ----------------------------------------------------------------------------LSDT 317 (508)
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 0126
Q ss_pred cccccCCCCCCCCCCcCCccccCCccccCCCcEEE-----eeCCCCCCCCCccCC--ceEeecCccchhHHHHHHHHHHH
Q 003469 541 VALFSARGPNIKDFSFQDADLLKPDILAPGSLIWA-----AWSPNGTDEANFVGE--GFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 541 ~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~S-----a~~~~~~~~~~~~~~--~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
++.||++|+... .+++|||.+|.+ ++ .+. .|..++||||++|||+|++||++
T Consensus 318 ~~~~s~~g~~~~-----------~~~~apg~~i~~~~~~~~~----------~~~~~~~~~~~Gts~a~p~v~g~aal~~ 376 (508)
T COG1404 318 VASFSNDGSPTG-----------VDIAAPGVNILSLSAVNTL----------PGDGADYVTLSGTSMAAPHVSGVAALVL 376 (508)
T ss_pred cccccccCCCCC-----------cceeCCCccccccccceee----------eCCccceEeeccccccccHHHHHHHHHH
Confidence 788999998521 299999999998 43 333 49999999999999999999999
Q ss_pred HhCC-CCCHHHHHHHHhccccc
Q 003469 614 QKHP-YWSPAAIKSALMTTTTK 634 (817)
Q Consensus 614 q~~p-~ls~~~ik~~L~~TA~~ 634 (817)
+.+| .+++.+++..+..++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 377 SANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccCcccCCHHHHHHHHhhcccc
Confidence 9999 89999999998888873
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=182.81 Aligned_cols=154 Identities=21% Similarity=0.352 Sum_probs=97.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++||+|.+||+|.||||.|||++.+ | ..-..++|...
T Consensus 152 ~awa~----g~tgknvttaimddgvdymhpdlk~n----y-----------------------naeasydfssn------ 194 (629)
T KOG3526|consen 152 EAWAL----GYTGKNVTTAIMDDGVDYMHPDLKSN----Y-----------------------NAEASYDFSSN------ 194 (629)
T ss_pred HHHhh----cccCCCceEEeecCCchhcCcchhcc----c-----------------------CceeecccccC------
Confidence 46666 89999999999999999999999975 1 11123344321
Q ss_pred CCCCCCCCCCCC--CCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-
Q 003469 222 FNPAVDFASPLD--GDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH- 298 (817)
Q Consensus 222 ~~~~~~~~~~~D--~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~- 298 (817)
++-+++.-.| .+.|||.|||-+++...+++ . -.|||.+.++..+|+++. .+..|++.|-...-+
T Consensus 195 --dpfpyprytddwfnshgtrcagev~aardngi--c------gvgvaydskvagirmldq---pymtdlieansmghep 261 (629)
T KOG3526|consen 195 --DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGI--C------GVGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGHEP 261 (629)
T ss_pred --CCCCCCcccchhhhccCccccceeeeeccCCc--e------eeeeeeccccceeeecCC---chhhhhhhhcccCCCC
Confidence 1112211112 57999999998776544332 1 269999999999999875 455566665332222
Q ss_pred cCCcEEEecCCCCCCCCCCccCCCChH---HHHHHHHHH-----cCceEEEecCCCCCC
Q 003469 299 DGVDILSLSVGPNSPPATTKTTFLNPF---DVTLLAAVK-----AGVFVAQAAGNGGPF 349 (817)
Q Consensus 299 ~g~dVIn~SlG~~~~~~~~~~~~~~~~---~~a~~~a~~-----~Gv~vV~AAGN~G~~ 349 (817)
...+|-+.|||-... + ...+.|- -+|+.+-++ .|-++|.|.|..|.+
T Consensus 262 ~kihiysaswgptdd---g-ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDD---G-KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ceEEEEecccCcCCC---C-cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 357899999996432 1 2222232 233333333 456888888887754
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=181.11 Aligned_cols=102 Identities=24% Similarity=0.263 Sum_probs=81.3
Q ss_pred ceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc---CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCce
Q 003469 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD---GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVF 338 (817)
Q Consensus 262 ~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~---g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~ 338 (817)
...||||+|+|+.|++.++. ..+++.++.+++.+ +++|||||||....... ..+.+.++.++.+|..+||.
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~--~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP--PAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC--HHHHHHHHHHHHHHHhCCeE
Confidence 46899999999999997653 34677888888887 99999999998643211 12345788889999999999
Q ss_pred EEEecCCCCCCCC-----------CccCCCCcEEEEeeeecC
Q 003469 339 VAQAAGNGGPFPK-----------TLVSYSPWITTVAAAIDD 369 (817)
Q Consensus 339 vV~AAGN~G~~~~-----------~~~~~~~~vitVgA~~~~ 369 (817)
||+|+||+|.... ..++.+|+|++||+++..
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~ 197 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLY 197 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeeccccc
Confidence 9999999997653 346789999999998644
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.9e-11 Score=107.96 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=63.2
Q ss_pred EEeeecceEEEEEEEEEcCCC-ceEEEEEEc--------CCC----------c-EEEEecCeEEEcCCCEEEEEEEEEEe
Q 003469 726 TVAHLVKTQVVTRTVTNVAEE-ETYSMSARM--------QPA----------I-AIEVNPPAMTLKPGASRKFTVTLTVR 785 (817)
Q Consensus 726 ~~~~~~~~~~~~~tv~n~~~~-~ty~~~~~~--------~~~----------~-~v~~~~~~~tv~~g~~~~~~v~~~~~ 785 (817)
.|.+.....+++.+|+|.+++ .+|++++.. ..+ + .+.+++.+|||+||++++|+|+|++|
T Consensus 2 ~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~p 81 (112)
T PF06280_consen 2 SLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITPP 81 (112)
T ss_dssp EEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE--
T ss_pred CccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEeh
Confidence 455555557788899999999 999999861 011 1 57778899999999999999999998
Q ss_pred c----CCCceEEEEEEEEeCCCc-EEEEeEE
Q 003469 786 S----VTGTYSFGEICMKGSRGH-KVNIPVI 811 (817)
Q Consensus 786 ~----~~~~~~~G~i~~~~~~~~-~l~iP~~ 811 (817)
. ..+.+++|||+|+++++. .|+||||
T Consensus 82 ~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 82 SGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 7 457899999999998775 9999997
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.4e-08 Score=84.42 Aligned_cols=47 Identities=40% Similarity=0.593 Sum_probs=41.0
Q ss_pred cCCceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceeccc
Q 003469 83 RDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRL 129 (817)
Q Consensus 83 ~~~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~ 129 (817)
....++.+.|...||||+++++++++++|+++|+|++|+|++.++++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 34788999999999999999999999999999999999999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=88.67 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=74.1
Q ss_pred cccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHH
Q 003469 425 EVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDY 504 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~ 504 (817)
.++...+++|||++|.| |.|.+.+|+.+++++||.++|+|++..............+|.+.|.. ++|+.|.++
T Consensus 39 ~d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~-~dG~~L~~~ 111 (143)
T cd02133 39 EDFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISK-EDGEALKAA 111 (143)
T ss_pred hccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecH-HHHHHHHHH
Confidence 34556678999999986 56889999999999999999999987542111111134689999866 999999999
Q ss_pred HhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCC
Q 003469 505 YNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNI 551 (817)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~ 551 (817)
+++ ...+.|..+.. ....+.++.||||||+.
T Consensus 112 l~~-------~~~i~~~~~~~---------~~~~p~va~fSsrgp~g 142 (143)
T cd02133 112 LES-------SKKLTFNTKKE---------KATNPDLADFSSRGPWG 142 (143)
T ss_pred HhC-------CCeEEEEeccc---------cccCCccccccCcCCCC
Confidence 875 12233333211 23445799999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.5e-07 Score=82.57 Aligned_cols=117 Identities=26% Similarity=0.399 Sum_probs=86.8
Q ss_pred EEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc-hHHH
Q 003469 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA-SIKK 454 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~-~~~~ 454 (817)
++++|++.+.|.++++... ..+++++..... .......|.. ..+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~-----~~~~~~~C~~-~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS-----GDVDASLCLP-GSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC-----CCCccccCCC-CCCChhhccccEEEEeCC------CCccHHH
Confidence 5789999999999987554 456666533211 2344578854 335557899999999874 45 7889
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhcc
Q 003469 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
+..++++.||.|+|++++........ .....+|.+.|.. ++++.|.+|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~~-~~~~~iP~v~I~~-~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDVV-ADAHVLPAVHVDY-EDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCceec-ccccccceEEECH-HHHHHHHHHHHcC
Confidence 99999999999999999876532222 2246799999976 9999999999865
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=93.91 Aligned_cols=99 Identities=21% Similarity=0.321 Sum_probs=60.2
Q ss_pred eeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC-cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEE
Q 003469 263 ASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV-DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQ 341 (817)
Q Consensus 263 ~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~-dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~ 341 (817)
.+-+||+|+|..|-.- ......+..|+.+...+=. -+|-.||+...........+-+.++.....|..+|+.+++
T Consensus 288 s~A~AP~A~I~lvvap----~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 288 SHAMAPKANIDLVVAP----NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhccCccCceEEEEcC----CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3568999999988551 2222223333333322211 2333566642111111122345667777888899999999
Q ss_pred ecCCCCCCCCC--------ccCCCCcEEEEee
Q 003469 342 AAGNGGPFPKT--------LVSYSPWITTVAA 365 (817)
Q Consensus 342 AAGN~G~~~~~--------~~~~~~~vitVgA 365 (817)
|+|.+|....+ .|+++|+|.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876543 3568999999997
|
|
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=70.89 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=58.3
Q ss_pred ccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC---CCCccCCCCCCCCeEEEcCchhHHH
Q 003469 424 PEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS---PGTKFDPVPVGIPGILITDVTKSMD 500 (817)
Q Consensus 424 ~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~---~~~~~~~~~~~~p~~~i~~~~~g~~ 500 (817)
...+...+++|||++|.| |.|++.+|+.+++++||.++|+++.... ...........||.++|.. ++|+.
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~-~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISY-EDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-H-HHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCH-HHHhh
Confidence 456677889999999966 7899999999999999999999992221 2223345667899999976 99999
Q ss_pred HHHHH
Q 003469 501 LVDYY 505 (817)
Q Consensus 501 l~~~~ 505 (817)
|.+|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98874
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=69.93 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=63.7
Q ss_pred CCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC--C-CccCCCCCCCCeEEEcCc
Q 003469 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP--G-TKFDPVPVGIPGILITDV 495 (817)
Q Consensus 419 ~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~--~-~~~~~~~~~~p~~~i~~~ 495 (817)
.+|. ...+.+.+++|+|+++.| |.|.|.+|..+|+++||.++|+||+.... . .........||.++|..
T Consensus 31 ~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~- 102 (120)
T cd02129 31 VLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSY- 102 (120)
T ss_pred CCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeH-
Confidence 5676 344555678999999987 78999999999999999999999987631 1 11112456789999988
Q ss_pred hhHHHHHHHHhcc
Q 003469 496 TKSMDLVDYYNTS 508 (817)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (817)
++|+.|++.+.++
T Consensus 103 ~dG~~i~~~l~~~ 115 (120)
T cd02129 103 KDMLDIQQTFGDS 115 (120)
T ss_pred HHHHHHHHHhccC
Confidence 9999998877643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.3e-05 Score=86.24 Aligned_cols=158 Identities=22% Similarity=0.274 Sum_probs=96.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+++.|+|.|.|++..||++... + ...+.+++....
T Consensus 24 ~~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~----~-----------------------~~~~s~d~~~~~----- 67 (431)
T KOG3525|consen 24 NAWCK----GYTGTRVSVTILDDGLECSHPDLRNN----Y-----------------------DPLGSYDVNRHD----- 67 (431)
T ss_pred ecccc----CCCCCceEEEEeeccccccCcccccc----c-----------------------CcceeEeeecCC-----
Confidence 56766 79999999999999999999999975 1 122222322210
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DG 300 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g 300 (817)
+.+.+-.+......|||-|++-++...... .=..|++|++++..++++...- ++...+...... .-
T Consensus 68 -~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~--------~C~vg~~~~~~~~g~~~l~~~v----~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 68 -NDPEPRCDGTNENKHGTRCAGCVAARANNL--------TCGVGVAYNATIGGIRMLAGCV----SDAVEAPSLGFGPCH 134 (431)
T ss_pred -CCcccccCCCCccccCCCCCcccccccCCC--------cCCCCcccCccccceeeeeeec----ccceecccccCCCCC
Confidence 111111222345899999999999874211 1247999999999999886431 122222222222 34
Q ss_pred CcEEEecCCCCCCC--CCCccCCCChHHHHHHHH-----HHcCceEEEecCCCCCCCC
Q 003469 301 VDILSLSVGPNSPP--ATTKTTFLNPFDVTLLAA-----VKAGVFVAQAAGNGGPFPK 351 (817)
Q Consensus 301 ~dVIn~SlG~~~~~--~~~~~~~~~~~~~a~~~a-----~~~Gv~vV~AAGN~G~~~~ 351 (817)
+++-+.|||-.... .+. -......++.++ ..+|-+.|+|-||.|....
T Consensus 135 ~di~scsw~pddd~~t~~~---~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDG---PGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred ceeecCcCCcccCCCcCCC---CcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 78899999964321 111 122233344333 3478899999999886543
|
|
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=69.55 Aligned_cols=82 Identities=16% Similarity=0.185 Sum_probs=63.1
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCc---cC----CCCCCCCeE
Q 003469 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK---FD----PVPVGIPGI 490 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~---~~----~~~~~~p~~ 490 (817)
.+.|..+.. ..+++|+|++++| |.|.|.+|..+|+++||.++|+||+....... +. .....||.+
T Consensus 21 ~~gC~~~~~--~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELRN--IHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCCC--ccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 467875332 4568999999987 68999999999999999999999986542111 11 234579999
Q ss_pred EEcCchhHHHHHHHHhcc
Q 003469 491 LITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (817)
+|.. ++|+.|.+.+...
T Consensus 93 ~Is~-~dG~~L~~~l~~g 109 (118)
T cd02127 93 FLLG-KNGYMIRKTLERL 109 (118)
T ss_pred EecH-HHHHHHHHHHHcC
Confidence 9988 9999998887754
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.5e-05 Score=70.71 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=59.2
Q ss_pred ccccccccccEEEEecccccccCcch-----HHHHHHHHHhcCceEEEEeecCCCCCC---ccCC--CCCCCCeEEEcCc
Q 003469 426 VLNKNLVEGNILLCGYSFNFVTGTAS-----IKKVSETAKSLGAAGFVLAVENVSPGT---KFDP--VPVGIPGILITDV 495 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~~~i~~~~~~~~~~---~~~~--~~~~~p~~~i~~~ 495 (817)
++...+++|||+|++| |.|. |.+|+++|+++||.++|+||+....+. .+.. ....||.++|..
T Consensus 49 d~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~- 121 (139)
T cd04817 49 SYICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDR- 121 (139)
T ss_pred cccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeH-
Confidence 3445678999999988 5677 999999999999999999999744332 1222 146899999988
Q ss_pred hhHHHHHHHHhc
Q 003469 496 TKSMDLVDYYNT 507 (817)
Q Consensus 496 ~~g~~l~~~~~~ 507 (817)
++|+.|...+..
T Consensus 122 ~dG~~L~~~l~~ 133 (139)
T cd04817 122 ADGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHHhcC
Confidence 999999887754
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=67.47 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=63.3
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCC--cc-CC-CCCCCCeEEEc
Q 003469 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT--KF-DP-VPVGIPGILIT 493 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~--~~-~~-~~~~~p~~~i~ 493 (817)
...|.. ..+...+++|||++|.| |.|.+.+|..+++++||.++|+||+...... .. .. ....+|.++|.
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is 101 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVIT 101 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEc
Confidence 467854 34455678999999987 5788999999999999999999998663211 11 11 34568999998
Q ss_pred CchhHHHHHHHHhcc
Q 003469 494 DVTKSMDLVDYYNTS 508 (817)
Q Consensus 494 ~~~~g~~l~~~~~~~ 508 (817)
. ++|+.|.+++...
T Consensus 102 ~-~~G~~l~~~l~~g 115 (122)
T cd04816 102 K-AAGAALRRRLGAG 115 (122)
T ss_pred H-HHHHHHHHHHcCC
Confidence 8 9999999988643
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=67.71 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=63.6
Q ss_pred CCCCCCCcccc-ccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC-CCC-cc-CCCCCCCCeEEE
Q 003469 417 SASDCQRPEVL-NKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS-PGT-KF-DPVPVGIPGILI 492 (817)
Q Consensus 417 ~~~~c~~~~~~-~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~-~~~-~~-~~~~~~~p~~~i 492 (817)
....|...... ...++.|+|+|+.| |.|.|.+|..+|+++||.++|+||+... ... .+ ......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35678765542 34578999999987 6899999999999999999999998762 111 11 122347898888
Q ss_pred cCchhHHHHHHHHhc
Q 003469 493 TDVTKSMDLVDYYNT 507 (817)
Q Consensus 493 ~~~~~g~~l~~~~~~ 507 (817)
.. ++|+.|++++..
T Consensus 117 s~-~~G~~l~~~l~~ 130 (138)
T cd02122 117 TN-PKGMEILELLER 130 (138)
T ss_pred cH-HHHHHHHHHHHc
Confidence 77 999999998864
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00012 Score=66.64 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCC-cc----CCCCCCCCeEE
Q 003469 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT-KF----DPVPVGIPGIL 491 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~----~~~~~~~p~~~ 491 (817)
..+.|... +..+++|+|+++.| |.|.|.+|+.+++++||.++|+||+....+. .+ ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 34678644 55778999999986 6899999999999999999999998764321 11 12345789999
Q ss_pred EcCchhHHHHHHHHhc
Q 003469 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
+.. ++++.|..+...
T Consensus 97 Is~-~~g~~L~~l~~~ 111 (117)
T cd04813 97 TSR-TSYHLLSSLLPK 111 (117)
T ss_pred EcH-HHHHHHHHhccc
Confidence 976 899998877654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=66.85 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=62.3
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC-----CC-cc--C---CCCCC
Q 003469 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-----GT-KF--D---PVPVG 486 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~-----~~-~~--~---~~~~~ 486 (817)
...|.... .+..++|||++++| |.|.|.+|..+|+++||.++|+||+.... .. .+ . .....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46786543 24568999999987 68999999999999999999999876542 11 11 1 12457
Q ss_pred CCeEEEcCchhHHHHHHHHhcc
Q 003469 487 IPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 487 ~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
||.++|.. .+|+.|.+.+...
T Consensus 99 IP~v~I~~-~dG~~L~~~l~~~ 119 (126)
T cd02126 99 IPVVFLFS-KEGSKLLAAIKEH 119 (126)
T ss_pred EEEEEEEH-HHHHHHHHHHHhC
Confidence 89999988 9999999888653
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00059 Score=63.36 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=59.4
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCch
Q 003469 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVT 496 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~ 496 (817)
....|...... ..+++|+|+|++| |.|.+.+|+.+++++||.++|+||+....-.........+|.+.+ .+
T Consensus 40 ~~~gC~~~~~~-~~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~ 110 (129)
T cd02124 40 ADDACQPLPDD-TPDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PE 110 (129)
T ss_pred CcccCcCCCcc-cccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HH
Confidence 44678754332 2368999999987 579999999999999999999999875421112223334566655 59
Q ss_pred hHHHHHHHHhc
Q 003469 497 KSMDLVDYYNT 507 (817)
Q Consensus 497 ~g~~l~~~~~~ 507 (817)
+|+.|++.+..
T Consensus 111 ~G~~l~~~l~~ 121 (129)
T cd02124 111 DGEAWIDALAA 121 (129)
T ss_pred HHHHHHHHHhc
Confidence 99999988764
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00024 Score=65.74 Aligned_cols=84 Identities=21% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCCCCCccccc-cc----cccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCcc----------CC
Q 003469 418 ASDCQRPEVLN-KN----LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKF----------DP 482 (817)
Q Consensus 418 ~~~c~~~~~~~-~~----~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~----------~~ 482 (817)
.+.|....... +. ...++|++++| |.|.|.+|+.+|+++||.++|+||+....-..+ ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 46787654433 22 36789999987 689999999999999999999999865421111 11
Q ss_pred CCCCCCeEEEcCchhHHHHHHHHhcc
Q 003469 483 VPVGIPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 483 ~~~~~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
....||.++|.. ++|+.|.+.+...
T Consensus 96 ~~i~IP~v~Is~-~~G~~L~~~l~~g 120 (127)
T cd02125 96 EKITIPSALITK-AFGEKLKKAISNG 120 (127)
T ss_pred CCceEeEEEECH-HHHHHHHHHHhcC
Confidence 234689999988 9999999887643
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=64.41 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCC-CccC--CCCCCCCeEEEc
Q 003469 417 SASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPG-TKFD--PVPVGIPGILIT 493 (817)
Q Consensus 417 ~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~-~~~~--~~~~~~p~~~i~ 493 (817)
....|..... ..+++|||++|.| |.|.+..|..+++++||.++|+|++..... ..+. .....+|.+.+.
T Consensus 26 ~~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~ 97 (118)
T cd04818 26 NTDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMIS 97 (118)
T ss_pred cccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEec
Confidence 4467865443 2358999999976 468899999999999999999999876421 1111 123568999986
Q ss_pred CchhHHHHHHHHhc
Q 003469 494 DVTKSMDLVDYYNT 507 (817)
Q Consensus 494 ~~~~g~~l~~~~~~ 507 (817)
. ++++.|.+|++.
T Consensus 98 ~-~~g~~l~~~l~~ 110 (118)
T cd04818 98 Q-ADGDALKAALAA 110 (118)
T ss_pred H-HHHHHHHHHHhc
Confidence 6 999999999874
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00034 Score=66.05 Aligned_cols=79 Identities=15% Similarity=0.286 Sum_probs=60.9
Q ss_pred CCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC-CCccC----CCCCCCCeEEE
Q 003469 418 ASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP-GTKFD----PVPVGIPGILI 492 (817)
Q Consensus 418 ~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~-~~~~~----~~~~~~p~~~i 492 (817)
.+.|.... .+++|+|+++.| |.|.|.+|+.+++++||.++|+||+.... .+... .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999987 78999999999999999999999976532 11111 12457998888
Q ss_pred cCchhHHHHHHHHhc
Q 003469 493 TDVTKSMDLVDYYNT 507 (817)
Q Consensus 493 ~~~~~g~~l~~~~~~ 507 (817)
.. .+|+.|.+++..
T Consensus 118 s~-~~G~~L~~~l~~ 131 (139)
T cd02132 118 PQ-SAGDALNKSLDQ 131 (139)
T ss_pred cH-HHHHHHHHHHHc
Confidence 77 999999998864
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00033 Score=67.20 Aligned_cols=84 Identities=18% Similarity=0.232 Sum_probs=64.2
Q ss_pred CCCCCCccc--cccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCC-----CCCCCCeE
Q 003469 418 ASDCQRPEV--LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDP-----VPVGIPGI 490 (817)
Q Consensus 418 ~~~c~~~~~--~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~-----~~~~~p~~ 490 (817)
.+.|..... .+.....|+|+++.| |.|+|.+|+.+|+++||.++|+||+.......+.. ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 457875443 133678999999987 68999999999999999999999986543222211 24589999
Q ss_pred EEcCchhHHHHHHHHhcc
Q 003469 491 LITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 491 ~i~~~~~g~~l~~~~~~~ 508 (817)
+|.. ++|+.|..++...
T Consensus 124 ~Is~-~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FVGK-STGEILKKYASYE 140 (153)
T ss_pred EeeH-HHHHHHHHHHhcC
Confidence 9988 9999998887653
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=60.47 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCC-CCC--CccCCCCCCCCeEEEcCc
Q 003469 419 SDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENV-SPG--TKFDPVPVGIPGILITDV 495 (817)
Q Consensus 419 ~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~-~~~--~~~~~~~~~~p~~~i~~~ 495 (817)
..|.... + +.+++|||+++.| |.|.+.+|+.+++++||.++|+||+.. ..- .........+|.++|..
T Consensus 32 ~gC~~~~-~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~- 102 (122)
T cd02130 32 LGCDAAD-Y-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ- 102 (122)
T ss_pred CCCCccc-C-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH-
Confidence 4676322 2 2468999999987 678999999999999999999999873 211 11112245689999888
Q ss_pred hhHHHHHHHHhcc
Q 003469 496 TKSMDLVDYYNTS 508 (817)
Q Consensus 496 ~~g~~l~~~~~~~ 508 (817)
++|+.|++.+...
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887653
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00054 Score=63.50 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCCCCcc-ccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccC-----CCCCCCCeEE
Q 003469 418 ASDCQRPE-VLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFD-----PVPVGIPGIL 491 (817)
Q Consensus 418 ~~~c~~~~-~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-----~~~~~~p~~~ 491 (817)
...|.... .+...+++|||++|.+ |.|.+..|..+++++||.++|++++......... .....+|.+.
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~ 103 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVG 103 (126)
T ss_pred eEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEE
Confidence 34564322 1456778999999976 5688999999999999999999998763222111 1345799999
Q ss_pred EcCchhHHHHHHHHhc
Q 003469 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
|.. ++++.|..++.+
T Consensus 104 is~-~~g~~l~~~~~~ 118 (126)
T cd00538 104 ISY-ADGEALLSLLEA 118 (126)
T ss_pred eCH-HHHHHHHHHHhc
Confidence 976 999999999874
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0073 Score=56.10 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=56.8
Q ss_pred ccccccccccEEEEecccccccCcc--hHHHHHHHHHhcCceEEEEeecCCCCCC--c---c-CCCCCCCCeEEEcCchh
Q 003469 426 VLNKNLVEGNILLCGYSFNFVTGTA--SIKKVSETAKSLGAAGFVLAVENVSPGT--K---F-DPVPVGIPGILITDVTK 497 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~--~~~~~~~~~~~~Ga~~~i~~~~~~~~~~--~---~-~~~~~~~p~~~i~~~~~ 497 (817)
++...+++|||+++.++ .+ .+..++.++.++||.++|++|+....-. . . ......+|.+.|.. ++
T Consensus 37 d~~~~~v~GkIvlv~~g------~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~-ed 109 (127)
T cd04819 37 DFDGLDLEGKIAVVKRD------DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSG-ED 109 (127)
T ss_pred HcCCCCCCCeEEEEEcC------CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeH-HH
Confidence 34455689999999874 44 6889999999999999999986544211 1 1 12345799999988 99
Q ss_pred HHHHHHHHhc
Q 003469 498 SMDLVDYYNT 507 (817)
Q Consensus 498 g~~l~~~~~~ 507 (817)
++.|...++.
T Consensus 110 g~~L~~~l~~ 119 (127)
T cd04819 110 GLRLARVAER 119 (127)
T ss_pred HHHHHHHHhc
Confidence 9999988864
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.12 Score=45.79 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=59.1
Q ss_pred eEEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEEEeEE
Q 003469 733 TQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVI 811 (817)
Q Consensus 733 ~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP~~ 811 (817)
..+.+.+|+|.+.. ..|.+.........+++++..-.|+||++.+++|+|.++...+ .+++.|.+.-. +..+.||.-
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g-~~~~~l~i~~e-~~~~~i~v~ 98 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLG-DYEGSLVITTE-GGSFEIPVK 98 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCc-eEEEEEEEEEC-CeEEEEEEE
Confidence 34456689999999 8999876432344577788888899999999999999755444 46799998854 457788865
Q ss_pred EE
Q 003469 812 AQ 813 (817)
Q Consensus 812 ~~ 813 (817)
+.
T Consensus 99 a~ 100 (102)
T PF14874_consen 99 AE 100 (102)
T ss_pred EE
Confidence 44
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.038 Score=46.47 Aligned_cols=56 Identities=32% Similarity=0.411 Sum_probs=36.3
Q ss_pred eEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeE-EEcCCCEEEEEEEEEEecCC
Q 003469 733 TQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAM-TLKPGASRKFTVTLTVRSVT 788 (817)
Q Consensus 733 ~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~-tv~~g~~~~~~v~~~~~~~~ 788 (817)
..+++.+|+|.+.. ...+++...|.|-++...+.++ .|+||+++++++++++|...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 45677899999976 5678888889988766777666 69999999999999998754
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.095 Score=49.13 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.8
Q ss_pred ccccccccccEEEEecccccccCcchHHHH-------HHHHHhcCceEEEEeecCCC------CCCccC-CCCCCCCeEE
Q 003469 426 VLNKNLVEGNILLCGYSFNFVTGTASIKKV-------SETAKSLGAAGFVLAVENVS------PGTKFD-PVPVGIPGIL 491 (817)
Q Consensus 426 ~~~~~~~~gki~~~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~~~i~~~~~~~------~~~~~~-~~~~~~p~~~ 491 (817)
.+...+++|||+++.++.........+..+ ...+++.||.++|++|.... .|.... .....+|.+.
T Consensus 32 ~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~ 111 (134)
T cd04815 32 AAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAA 111 (134)
T ss_pred hcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEE
Confidence 344568999999997742211111156565 79999999999999996422 222111 2234699999
Q ss_pred EcCchhHHHHHHHHhc
Q 003469 492 ITDVTKSMDLVDYYNT 507 (817)
Q Consensus 492 i~~~~~g~~l~~~~~~ 507 (817)
|.. ++++.|...+..
T Consensus 112 is~-ed~~~L~r~l~~ 126 (134)
T cd04815 112 ISV-EDADMLERLAAR 126 (134)
T ss_pred ech-hcHHHHHHHHhC
Confidence 988 999999887764
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.3 Score=44.60 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=39.6
Q ss_pred EEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCC
Q 003469 735 VVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVT 788 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~ 788 (817)
.++..|.|.+.. .+|++++....++.+......++|+||++.++.|.+..|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 466789999999 999999998889888665689999999999999999998753
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.44 Score=43.69 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=48.5
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEEc----CCCc--------------E------EEEecCeEEEcCCCEEEEEEEEEEec
Q 003469 732 KTQVVTRTVTNVAEE-ETYSMSARM----QPAI--------------A------IEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~~----~~~~--------------~------v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
.++++..+|+|.+++ .+|.+.... ..|+ . +++ +..|+|+||++++|+++++.|.
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcCC
Confidence 456788899999999 898887532 1110 0 222 4569999999999999999987
Q ss_pred C-CCceEEEEEEEE
Q 003469 787 V-TGTYSFGEICMK 799 (817)
Q Consensus 787 ~-~~~~~~G~i~~~ 799 (817)
. -.+.+-|-|.++
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 5 345556778876
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.33 Score=45.68 Aligned_cols=71 Identities=18% Similarity=0.070 Sum_probs=46.8
Q ss_pred CCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccc------cCc------chHHHHHHHHHhc
Q 003469 395 GNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFV------TGT------ASIKKVSETAKSL 462 (817)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~------~g~------~~~~~~~~~~~~~ 462 (817)
.....++++.+... ....|. ..+|...+++|||+++.++.... .+. .++..|...+.++
T Consensus 18 ~~~~aelVfvGyGi--------~a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~ 88 (142)
T cd04814 18 AIKDAPLVFVGYGI--------KAPELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARH 88 (142)
T ss_pred cccceeeEEecCCc--------CCCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHC
Confidence 34456676655332 122343 24677778999999998752200 011 1577899999999
Q ss_pred CceEEEEeecCC
Q 003469 463 GAAGFVLAVENV 474 (817)
Q Consensus 463 Ga~~~i~~~~~~ 474 (817)
||.++|++++..
T Consensus 89 GA~gvIii~~~~ 100 (142)
T cd04814 89 GAAGVLIVHELA 100 (142)
T ss_pred CCcEEEEEeCCC
Confidence 999999999755
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.85 Score=42.39 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=53.9
Q ss_pred EEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEe
Q 003469 736 VTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKG 800 (817)
Q Consensus 736 ~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~ 800 (817)
+...+-|.... +..+++........+.-.|..++|.|++.+++..++++.+...+.++|+|++..
T Consensus 73 LDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 73 LDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 33456777766 667777766667777778999999999999999999999999999999999863
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.13 Score=50.49 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=34.4
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003469 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
..+++|||+|+.+ |.|.+.+|+.+|+++||+++|+|++.
T Consensus 51 gv~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 3578999999987 56788999999999999999999874
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.52 Score=44.91 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=39.6
Q ss_pred cccccccccccEEEEecccc--------c----ccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003469 425 EVLNKNLVEGNILLCGYSFN--------F----VTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~--------~----~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
..+...+++|||+++.++.. + ....|.+..|..+|.+.||.++|+|++....
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 45566789999999987631 0 0122678899999999999999999986654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.2 Score=41.60 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=37.6
Q ss_pred cccccccccccEEEEecccccccC------cchHHHHHHHHHhcCceEEEEeecCCC
Q 003469 425 EVLNKNLVEGNILLCGYSFNFVTG------TASIKKVSETAKSLGAAGFVLAVENVS 475 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~~~~g------~~~~~~~~~~~~~~Ga~~~i~~~~~~~ 475 (817)
.++...+++|||+++.++.....+ ...+..|.++|.++||.++|++++...
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 355667899999999885321111 124778999999999999999997543
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.74 Score=46.78 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=34.5
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003469 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
..+++|||+|+.++ .+....|+.+|+++||.++|+|++....
T Consensus 67 gvdv~GKIvLvr~G------~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~ 108 (220)
T cd02121 67 GIDVKGKIVIARYG------GIFRGLKVKNAQLAGAVGVIIYSDPADD 108 (220)
T ss_pred CCCCCCeEEEEECC------CccHHHHHHHHHHcCCEEEEEEeCchhc
Confidence 45789999999764 4555789999999999999999986543
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.66 Score=51.22 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=54.1
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC-----CCCccCCCCCCCCeEEEcCchhHHHHHH
Q 003469 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS-----PGTKFDPVPVGIPGILITDVTKSMDLVD 503 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~-----~~~~~~~~~~~~p~~~i~~~~~g~~l~~ 503 (817)
....+||++++.| |+|.|..|.+.|+++||.++++.|+..+ .+.........||...|.. ++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~-~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISY-SDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEh-hhHHHHHh
Confidence 4567899999876 7999999999999999999999998433 1233344567899999988 88887765
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.39 Score=45.24 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=33.9
Q ss_pred ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCC
Q 003469 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSP 476 (817)
Q Consensus 430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~ 476 (817)
-+++|||+|+..+ ....-.|+++|++.||.|+|+|.+....
T Consensus 37 V~v~GkIvi~RyG------~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 37 MNVTNQIALLKLG------QAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred CCccceEEEEecc------CcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 4689999999874 3456789999999999999999976543
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.17 E-value=2.3 Score=47.11 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=54.1
Q ss_pred eEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeEE-EcCCCEEEEEEEEEEecCCC-ceEEEEEEEEeC
Q 003469 733 TQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAMT-LKPGASRKFTVTLTVRSVTG-TYSFGEICMKGS 801 (817)
Q Consensus 733 ~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~t-v~~g~~~~~~v~~~~~~~~~-~~~~G~i~~~~~ 801 (817)
.+++...+.|.|+. ..-++++..|.|-.+++++.+|- |+||++.+|++|+++|.... .-|.=.|+.++|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 45677789999987 66788999999999999998774 78999999999999987543 234445555554
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.52 E-value=10 Score=42.22 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEE-cCCCcEEEEec-----CeEEEcCCCEEEEEEEEEEecC
Q 003469 732 KTQVVTRTVTNVAEE-ETYSMSAR-MQPAIAIEVNP-----PAMTLKPGASRKFTVTLTVRSV 787 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~-~~~~~~v~~~~-----~~~tv~~g~~~~~~v~~~~~~~ 787 (817)
.+..|+.++.|.+.. .+|.++.. .|.+-+..|.. +++.|.||++++|+|.+.++..
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 345788899999999 99999998 67776555543 4788999999999999999764
|
|
| >PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins | Back alignment and domain information |
|---|
Probab=83.83 E-value=16 Score=31.33 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=39.9
Q ss_pred EEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCC
Q 003469 734 QVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSR 802 (817)
Q Consensus 734 ~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~ 802 (817)
..+.++++|.|.. .++++.-..-. .-.|.+++|+||++.++.+.+ ...+.||+ ++++..+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~ag~~~~~~w~l---~~s~gwYD--l~v~~~~ 80 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAAGQTVSLTWPL---AASGGWYD--LTVTGPN 80 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECCCCEEEEEEee---cCCCCcEE--EEEEcCC
Confidence 4677899999988 77777652111 112678999999998888877 23445665 5555433
|
; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process |
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=82.93 E-value=6.9 Score=44.23 Aligned_cols=52 Identities=27% Similarity=0.317 Sum_probs=45.4
Q ss_pred EEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEec
Q 003469 735 VVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRS 786 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~ 786 (817)
..+..+.|.+.. .+|++++...+++.++..+..|+|+||++.++.|.+..+.
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEech
Confidence 456689999998 9999999988888888765689999999999999999875
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >smart00635 BID_2 Bacterial Ig-like domain 2 | Back alignment and domain information |
|---|
Probab=82.24 E-value=5.6 Score=33.47 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=35.5
Q ss_pred EEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEE
Q 003469 760 AIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVN 807 (817)
Q Consensus 760 ~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~ 807 (817)
.|+++|..++|+.|++..|++++++....+ ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999987654432 577889887665555
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.71 E-value=0.91 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.650 Sum_probs=21.9
Q ss_pred CCCCCceEEEEecceecCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFG 174 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~ 174 (817)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 489999999999999999888775
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=81.30 E-value=13 Score=33.90 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEEEEEEEcCCC-ceEEEEEEc---CC----CcEEEEecCeEEEcCCCEEEEEEEEEEec-CCCceEEEEEEEEe
Q 003469 735 VVTRTVTNVAEE-ETYSMSARM---QP----AIAIEVNPPAMTLKPGASRKFTVTLTVRS-VTGTYSFGEICMKG 800 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~---~~----~~~v~~~~~~~tv~~g~~~~~~v~~~~~~-~~~~~~~G~i~~~~ 800 (817)
..+.+|+|.++. ..+.+.+.. .. .-.+-++|..++|+||+++.|.| +..+. ..+....=+|.++.
T Consensus 17 ~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 17 SASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp EEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred EEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 445689999997 666666653 11 11577899999999999999999 66433 23444445677764
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 817 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 6e-73 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-66 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 2e-11 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 1e-09 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 3e-09 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 3e-09 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-09 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-09 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 4e-09 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 5e-09 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-09 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-09 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 6e-09 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-09 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 7e-09 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 7e-09 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 7e-09 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 7e-09 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 7e-09 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 8e-09 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 8e-09 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 9e-09 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-09 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 1e-08 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-08 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-08 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 2e-08 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 2e-08 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 2e-08 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 2e-08 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-08 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-08 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 3e-08 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-08 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 4e-08 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-08 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 1e-07 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 6e-07 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 7e-07 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 7e-07 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 7e-07 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 7e-07 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 8e-07 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 8e-07 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 1e-06 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 1e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 2e-06 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 2e-06 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 4e-06 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 5e-06 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 7e-06 | ||
| 4dzt_A | 276 | Aqualysin I: The Crystal Structure Of A Serine Prot | 1e-05 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 3e-05 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-05 | ||
| 1s2n_A | 284 | Crystal Strucure Of A Cold Adapted Subtilisin-Like | 6e-05 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 1e-04 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 2e-04 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 4e-04 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 5e-04 | ||
| 3lxu_X | 1354 | Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp I | 8e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease From An Extreme Thermophile, Thermus Aquaticus Yt-1 Length = 276 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine Proteinase Length = 284 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii) Length = 1354 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 520 bits (1340), Expect = e-176
Identities = 220/701 (31%), Positives = 324/701 (46%), Gaps = 77/701 (10%)
Query: 130 TTHTPEFLGL--PTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKY 187
TTHT +FL L +G+WP G G+D+++ +DSGI+P SF ++
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASFQDDGMPE--IPKRW 54
Query: 188 RGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG 247
+G C+ S CN K+IGA +F + +A + S D DGHG+H A+I AG
Sbjct: 55 KGICKPGTQFNASMCNRKLIGANYFNKGILAN-DPTVNITMNSARDTDGHGTHCASITAG 113
Query: 248 NNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLS 307
N V G+ G A G+APRAR+AVYK + G F +D++AA+DQAV DGVD++S+S
Sbjct: 114 NFAKGVSHFGYAPGTARGVAPRARLAVYKFSFN-EGTFTSDLIAAMDQAVADGVDMISIS 172
Query: 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367
G P + + + A+ GV V+ +AGN GP +L + SPWI VA+
Sbjct: 173 YGYRFIP-----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGH 227
Query: 368 DDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVL 427
DR + L LGNG + G L PA R ++ SDC E+L
Sbjct: 228 TDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKT-----------LSDCSSEELL 276
Query: 428 NKN-LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVG 486
++ E I++C + +F I + + E+ F
Sbjct: 277 SQVENPENTIVICDDNGDFSDQMRIITRA-------RLKAAIFISED---PGVFRSATFP 326
Query: 487 IPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546
PG+++ + + +++Y S T TI + K AP VA SA
Sbjct: 327 NPGVVV-NKKEGKQVINYVKNSV-----------TPTATITFQETYLDTKPAPVVAASSA 374
Query: 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN----GTDEANFVGEGFALISGTSMAA 602
RGP+ + KPDILAPG LI AA+ PN + + L SGTSMAA
Sbjct: 375 RGPS-----RSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAA 429
Query: 603 PHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFD 662
PH AGIAA++K HP WSP+AI+SA+MTT LD +P++ ++ ATP D
Sbjct: 430 PHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNK-------AATPLD 482
Query: 663 YGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYS-MGHPYNFN 721
G+GHV+P ALDPGL++DA +DY+ LC+ + + +++ + N
Sbjct: 483 MGAGHVDPNRALDPGLVYDATPQDYVNLLCSL-NFTEEQFKTIARSSASHNCSNPSADLN 541
Query: 722 TPSITV------AHLVKTQVVTRTVTNVAE-EETYSMSARMQPAIAIEVNPPAMTL-KPG 773
PS + Q RTVTNV + TY + I V+P +
Sbjct: 542 YPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKN 601
Query: 774 ASRKFTVTLTVRS-VTGTYSFGEICMKGSRG-HKVNIPVIA 812
+ +T+T+ + + G I G H V P++
Sbjct: 602 EKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 516 bits (1331), Expect = e-175
Identities = 228/689 (33%), Positives = 322/689 (46%), Gaps = 82/689 (11%)
Query: 130 TTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRG 189
TT + +FLG P V +IV+G +D+GI+P PSF P P PK++G
Sbjct: 1 TTRSWDFLGFPLTVPRRSQ----VESNIVVGVLDTGIWPESPSFDDEGFSP--PPPKWKG 54
Query: 190 KCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNN 249
CE + CN KIIGA+ + + D P D +GHG+HTA+ AAG
Sbjct: 55 TCETSNN---FRCNRKIIGARSYHIGRPIS-----PGDVNGPRDTNGHGTHTASTAAGGL 106
Query: 250 GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVG 309
++G G A G P ARIA YK + G D++AA D A+ DGVDI+SLSVG
Sbjct: 107 VSQANLYGLGLGTARGGVPLARIAAYKVCWN-DGCSDTDILAAYDDAIADGVDIISLSVG 165
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDD 369
+P F++ + AV+ G+ + +AGNGGP T S SPW+ +VAA+ D
Sbjct: 166 GANPR----HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMD 221
Query: 370 RRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNK 429
R++ + +GNG+ G+ S T N+ + LV+ D+ + K ++ C + +N
Sbjct: 222 RKFVTQVQIGNGQSFQGV--SINTFDNQYYPLVSGRDIPN-TGFDKSTSRFCT-DKSVNP 277
Query: 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPG 489
NL++G I++C SF E KSL A VL N P+P
Sbjct: 278 NLLKGKIVVCEASFGP----------HEFFKSLDGAAGVLMTSNTRDYADSYPLPS---- 323
Query: 490 ILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGP 549
+ D + + Y + R + FK T IL+ SAP V FS+RGP
Sbjct: 324 -SVLDPNDLLATLRYIYS--IRSPGATI--FKST--------TILNASAPVVVSFSSRGP 370
Query: 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609
N D++KPDI PG I AAW F +ISGTSM+ PHI GIA
Sbjct: 371 N-----RATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIA 425
Query: 610 ALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVN 669
VK +P WSPAAIKSALMTT + ++ P F YGSGHVN
Sbjct: 426 TYVKTYNPTWSPAAIKSALMTTASPMNARFNP----------------QAEFAYGSGHVN 469
Query: 670 PRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQP---CNYSMGHPYNFNTPSIT 726
P A+ PGL++DA DY+ FLC G + +R T + + G ++ N PS
Sbjct: 470 PLKAVRPGLVYDANESDYVKFLCGQ-GYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFG 528
Query: 727 VA---HLVKTQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLK-PGASRKFTVT 781
++ Q RT+T+VA + TY + I VNP ++ G + FT+T
Sbjct: 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588
Query: 782 LTVRSVTGTYSFGEICMKGSRGHKVNIPV 810
+ S+ G + + H V P+
Sbjct: 589 VRG-SIKGFVVSASL-VWSDGVHYVRSPI 615
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-109
Identities = 112/705 (15%), Positives = 223/705 (31%), Gaps = 130/705 (18%)
Query: 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRS 200
+ G G V+ +D+G +H ++ +Y+ K +++
Sbjct: 7 KTLQEKAG----KGAGTVVAVIDAGFDKNHEAWR----LTDKTKARYQSKEDLEKAK--- 55
Query: 201 FCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEF 260
I + + ++ HG+H + I +GN E
Sbjct: 56 -KEHGITYGEWVNDKVAYYHDYS---KDGKTAVDQEHGTHVSGILSGN----APSETKEP 107
Query: 261 GRASGMAPRARIAVYKALYRLFGG-FVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKT 319
R G P A++ + + + + AI A++ G ++++S G +
Sbjct: 108 YRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYAN-- 165
Query: 320 TFLNPFDVTLLAAVKAGVFVAQAAGNGGP---FPKTLVSYSPWITTVAA-AIDDRRYKNH 375
+ A GV + +AGN + ++ P V A D
Sbjct: 166 -LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 224
Query: 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGN 435
+ ++ + + A ++ +++ N + + A+ + + V+G
Sbjct: 225 SYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRG--TKEDDFKDVKGK 282
Query: 436 ILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDV 495
I L G K AK GA G ++ P +P I+
Sbjct: 283 IALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRK 336
Query: 496 TKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFS 555
+ L D + T F T + S +++ FS+ G
Sbjct: 337 DGLL-LKDNPQKTIT---------FNATPKVLP------TASGTKLSRFSSWGLTA---- 376
Query: 556 FQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQK 615
+KPDI APG I ++ + N +A +SGTSM+AP +AGI L++++
Sbjct: 377 ---DGNIKPDIAAPGQDILSSVANNK----------YAKLSGTSMSAPLVAGIMGLLQKQ 423
Query: 616 HPYWSPAA--------IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGH 667
+ P K LM++ T L +P G+G
Sbjct: 424 YETQYPDMTPSERLDLAKKVLMSSATALYDEDEK--------------AYFSPRQQGAGA 469
Query: 668 VNPRAALDPGL-IFDAGYEDYLGFLCTTPGIDIHE--IRNYTNQPCNYSMGHPYNFNTPS 724
V+ + A + + D L + N +++P
Sbjct: 470 VDAKKASAATMYVTDKDNTSSKVHLNNVSDKFEVTVNVHNKSDKPQELYYQA-------- 521
Query: 725 ITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTV 784
V ++ + P + E + +T+ +S++ TV +
Sbjct: 522 -----------------TVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDA 564
Query: 785 RSVT---------GTYSFGEICMK--GSRGHKVNIPVIA-QGNWR 817
+ G + G + K ++ ++IP I +G++
Sbjct: 565 SRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFG 609
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-24
Identities = 55/280 (19%), Positives = 86/280 (30%), Gaps = 58/280 (20%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
V +++R P D + APG I + F L++GTS
Sbjct: 418 NVYTWTSRDP------CIDGGQ-GVTVCAPGGAIASVP--------QFTMSKSQLMNGTS 462
Query: 600 MAAPHIAGIAALV----KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
MAAPH+AG AL+ KQ++ +SP +IK A+ T TKL
Sbjct: 463 MAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD---------------- 506
Query: 656 VTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMG 715
PF G G +N A + ++ L F + + +
Sbjct: 507 ----PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGN---NADKGIHLRQGVQRNS 559
Query: 716 HPYNFNTPSITVAHLVKTQVVTRTVTNVAEEETYSMSARMQPAIAIEVNPPAMTLKPGAS 775
YN + + + ++ A V A +
Sbjct: 560 IDYN-----VYIEPIFYNDKEADPKDKFNFNVRLNLIAS-----QPWVQCGAFLDLSYGT 609
Query: 776 RKFTVTLTVRSVT-GTYSFGEI----CMKGSRGHKVNIPV 810
R V + + G +S I +G IPV
Sbjct: 610 RSIAVRVDPTGLQPGVHS-AVIRAYDTDCVQKGSLFEIPV 648
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 6e-17
Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 61/286 (21%)
Query: 104 TPDQAEILQRAPGVKSVERDWKVRRLTTHTPEF----LGLPTGVWPTGGGFDRAGEDIVI 159
P +A L + D+++ L ++ + ++PT G+ +
Sbjct: 166 NPGEASKLPWDKKILKENLDFELEMLNSYEKVYGDIKTSYDCILFPTADGWLTIVDTTEQ 225
Query: 160 GFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA 219
G +D + S + + +
Sbjct: 226 GDLDQALRIGEYSRTHETRNVDDFLSI-------------------------------SV 254
Query: 220 RAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALY 279
+ HG+H ++IA+GN+ G+AP A+I
Sbjct: 255 NVHDEGNVLEVVGMSSPHGTHVSSIASGNHS---------SRDVDGVAPNAKIVSMTIGD 305
Query: 280 RLFGGFV--ADVVAAIDQAV-----HDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAA 332
G +V A+ + + +D++++S G + + + ++
Sbjct: 306 GRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYG--EHANWSNSGRIG--ELMNEVV 361
Query: 333 VKAGVFVAQAAGNGGPFPKTLVSY-----SPWITTVAAAIDDRRYK 373
K GV +AGN GP T V P + V A + + +
Sbjct: 362 NKYGVVWVASAGNHGPALCT-VGTPPDISQPSLIGVGAYVSPQMME 406
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 26/150 (17%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+ FS+RGP + LKP+++APG+ I AA +GT + + + GT+
Sbjct: 308 VITDFSSRGPTADNR-------LKPEVVAPGNWIIAAR-ASGTSMGQPINDYYTAAPGTA 359
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA PH+AGIAAL+ Q HP W+P +K+AL+ T + K
Sbjct: 360 MATPHVAGIAALLLQAHPSWTPDKVKTALIETADIV------------------KPDEIA 401
Query: 660 PFDYGSGHVNPRAALDPGLIFDAGYEDYLG 689
YG+G VN A + Y+
Sbjct: 402 DIAYGAGRVNAYKAAYYDNYAKLTFTGYVS 431
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 69/302 (22%), Positives = 107/302 (35%), Gaps = 83/302 (27%)
Query: 87 KKLYSYKHLINGFAVHITPDQAEIL-----------QRAPGVKSVERDWKVRRLTTHTPE 135
K Y+Y I AV I I+ + GV+ ++ D+ V+
Sbjct: 61 KIKYNYHI-IPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGL 119
Query: 136 FLGLPT----GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKC 191
+W G G I IG +D+GI HP
Sbjct: 120 DESAAQVMATNMWNLGYD----GSGITIGIIDTGIDASHPDLQ----------------- 158
Query: 192 EVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG--NN 249
GK+IG F +P D +GHG+H A+IAAG
Sbjct: 159 ------------GKVIGWVDFVN------------GKTTPYDDNGHGTHVASIAAGTGAA 194
Query: 250 GIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAID----QAVHDGVDILS 305
G+ GMAP A++ K L G ++D++ +D G+ +++
Sbjct: 195 SN---------GKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVIN 245
Query: 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY--SPWITTV 363
LS+G ++ + + + A AG+ V AAGN GP T+ S + + TV
Sbjct: 246 LSLG-----SSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITV 300
Query: 364 AA 365
A
Sbjct: 301 GA 302
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 8e-23
Identities = 61/325 (18%), Positives = 99/325 (30%), Gaps = 101/325 (31%)
Query: 87 KKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHTPEFL-------GL 139
+Y +K I V + + L++ PGV+ VE D + L + +
Sbjct: 25 HIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTI 83
Query: 140 PTG--------VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKC 191
P G VW G + I + +D+G+ HP
Sbjct: 84 PWGIERVKAPSVWSITDG---SVSVIQVAVLDTGVDYDHPDL------------------ 122
Query: 192 EVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTA-AIAAGNNG 250
I + D +GHG+H IAA NN
Sbjct: 123 -----------AANIAWCVSTL-------RGKVSTKLRDCADQNGHGTHVIGTIAALNND 164
Query: 251 IPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD----------- 299
I V G+AP +I + L G +D+ I+QA+
Sbjct: 165 IGV----------VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDG 214
Query: 300 ---------GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP 350
+++S+S+G + + + A AG+ + A+GN G
Sbjct: 215 IIAGDPDDDAAEVISMSLGGPADDSYLYDMI--------IQAYNAGIVIVAASGNEGA-- 264
Query: 351 KTLVSY---SPWITTVAA-AIDDRR 371
SY P + V A +D
Sbjct: 265 -PSPSYPAAYPEVIAVGAIDSNDNI 288
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 42/125 (33%)
Query: 564 PDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKH------- 616
P++ APG I + + P+ + + GT+MA PH++G+ AL++ +
Sbjct: 296 PEVSAPGVDILSTY-PDD---------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKI 345
Query: 617 ------PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNP 670
S ++ L T L YG G V
Sbjct: 346 LPVGTFDDISKNTVRGILHITADDLGPTGWDAD-------------------YGYGVVRA 386
Query: 671 RAALD 675
A+
Sbjct: 387 ALAVQ 391
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 536 KSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALI 595
+VA +S+RG + + +I APGS +++ W G I
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEG-DIEISAPGSSVYSTWYNGGY----------NTI 246
Query: 596 SGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
SGTSMA PH++G+AA + ++P S ++S L +D
Sbjct: 247 SGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 48/234 (20%), Positives = 72/234 (30%), Gaps = 71/234 (30%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
+ G G I I +D+G+ HP
Sbjct: 18 TLTSTTG----GSGINIAVLDTGVNTSHPDLV---------------------------- 45
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG---NNGIPVRMHGHE 259
+ + F S D +GHG+H A A ++ +
Sbjct: 46 -NNVEQCKDFTG--------ATTPINNSCTDRNGHGTHVAGTALADGGSDQAGIY----- 91
Query: 260 FGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV-----DILSLSVGPNSPP 314
G+AP A + YK L G+ D+ AAI A I+S+S+G ++
Sbjct: 92 -----GVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANN 146
Query: 315 ATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
+ + A GV + AAGN G T + Y P VAA
Sbjct: 147 SL--------ISSAVNYAYSKGVLIVAAAGNSGYSQGT-IGYPGALPNAIAVAA 191
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 45/136 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
Q A FS+ GP + D++APG I + P + +GTS
Sbjct: 185 QRASFSSVGP-------------ELDVMAPGVSIQSTL-PGN---------KYGAYNGTS 221
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA+PH+AG AAL+ KHP W+ ++S+L TTTKL
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKL----------------------GD 259
Query: 660 PFDYGSGHVNPRAALD 675
F YG G +N +AA
Sbjct: 260 SFYYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 54/228 (23%), Positives = 80/228 (35%), Gaps = 69/228 (30%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
+ G G ++ + +DSGI HP G V +T
Sbjct: 16 LHSQGYT----GSNVKVAVIDSGIDSSHPDLKV-----------AGGASMVPSET----- 55
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTA-AIAAGNNGIPVRMHGHEFG 261
NP D + HG+H A +AA NN I V
Sbjct: 56 --------------------NPFQD------NNSHGTHVAGTVAALNNSIGV-------- 81
Query: 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTF 321
G+AP A + K L G + ++ I+ A+ + +D++++S+G S A K
Sbjct: 82 --LGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAV 139
Query: 322 LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL-VSY---SPWITTVAA 365
AV +GV V AAGN G + V Y P + V A
Sbjct: 140 DK--------AVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA 179
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 45/135 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
A FS+ G + +++APG+ +++ + P +A ++GTS
Sbjct: 184 NRASFSSVGA-------------ELEVMAPGAGVYSTY-PTN---------TYATLNGTS 220
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA+PH+AG AAL+ KHP S + +++ L +T T L +
Sbjct: 221 MASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL----------------------GS 258
Query: 660 PFDYGSGHVNPRAAL 674
F YG G +N AA
Sbjct: 259 SFYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 50/228 (21%), Positives = 75/228 (32%), Gaps = 70/228 (30%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
V G G ++ + +D+GI HP G V +
Sbjct: 16 VQAQGFK----GANVKVAVLDTGIQASHPDLNV-----------VGGASFVAGEA----- 55
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFG 261
DG+GHG+H A +AA +N V
Sbjct: 56 ---------------------------YNTDGNGHGTHVAGTVAALDNTTGV-------- 80
Query: 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTF 321
G+AP + K L G + +V+ I+ A +G+D++++S+G S K
Sbjct: 81 --LGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAV 138
Query: 322 LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTL-VSY---SPWITTVAA 365
N A GV V AAGN G T + Y + V A
Sbjct: 139 DN--------AYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA 178
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 43/135 (31%), Positives = 56/135 (41%), Gaps = 45/135 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
A FS G + DI+APG + + + P +A ++GTS
Sbjct: 179 NRASFSQYGAGL-------------DIVAPGVNVQSTY-PGS---------TYASLNGTS 215
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA PH+AG AALVKQK+P WS I++ L T T L +
Sbjct: 216 MATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL----------------------GS 253
Query: 660 PFDYGSGHVNPRAAL 674
YGSG VN AA
Sbjct: 254 TNLYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 229 ASPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVA 287
S DG+GHG+H A IAA NN I V G+AP A + K L G V+
Sbjct: 54 PSTQDGNGHGTHVAGTIAALNNSIGV----------LGVAPSAELYAVKVLGASGSGSVS 103
Query: 288 DVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG 347
+ ++ A ++G+ + +LS+G SP AT + + A GV V A+GN G
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNS--------ATSRGVLVVAASGNSG 155
Query: 348 PFPKTLVSY---SPWITTVAA 365
+SY V A
Sbjct: 156 A---GSISYPARYANAMAVGA 173
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-19
Identities = 54/331 (16%), Positives = 94/331 (28%), Gaps = 81/331 (24%)
Query: 54 KIDTTSELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQR 113
K +T AR L+ + K L+ + L+ GF V ++ D E+ +
Sbjct: 83 KEETHLSQSERTARRLQAQA------ARRGYLTKILHVFHGLLPGFLVKMSGDLLELALK 136
Query: 114 APGVKSVERDWKVRRLTTHTPEFLGLPTGVWPTGGGF--DRAGEDIVIGFVDSGIYPHHP 171
P V +E D V P L T + G + + +D+ I H
Sbjct: 137 LPHVDYIEEDSSVF--AQSIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHR 194
Query: 172 SFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231
E P+ + +
Sbjct: 195 EIEGRVM---------VTDFENVPEEDGTRFHR-------------------------QA 220
Query: 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVA 291
D HG+H A + +G + +G+A A + + L G V+ +
Sbjct: 221 SKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLI 266
Query: 292 AIDQAVHDGVD------ILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGN 345
++ + ++ L + + +AGV + AAGN
Sbjct: 267 GLEFIRKSQLVQPVGPLVVLLPLAGGYSRV---------LNAACQRLARAGVVLVTAAGN 317
Query: 346 GGPFPKTLVSYSP----WITTVAA-AIDDRR 371
YSP + TV A D+
Sbjct: 318 FRDDACL---YSPASAPEVITVGATNAQDQP 345
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 4e-15
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG I A S T F SGTS AA H+AGIAA++ P + A +
Sbjct: 360 DLFAPGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAEL 411
Query: 625 KSALMTTTTK 634
+ L+ + K
Sbjct: 412 RQRLIHFSAK 421
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 89.6 bits (222), Expect = 7e-19
Identities = 41/293 (13%), Positives = 81/293 (27%), Gaps = 69/293 (23%)
Query: 80 LFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAP-GVKSVERDWKVRRLTTHTPEFL- 137
L ++ + +Y+ ++ + +T A L +K + + T +
Sbjct: 60 LVKKKSLNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTS 118
Query: 138 --------------GLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGP 183
+ + I +D+G+ +H ++ +
Sbjct: 119 NESLFSRQWDMNKITNNGASYDDLPK----HANTKIAIIDTGVMKNHDDLKNNFSTDSKN 174
Query: 184 VPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAA 243
+ G +P+ D D GHG+ +
Sbjct: 175 LVPLNGFRGTEPE---------------------------ETGDVHDVNDRKGHGTMVSG 207
Query: 244 IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI 303
+ N + G+AP + +Y+ + V AI QA +DG +
Sbjct: 208 QTSANGKL------------IGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQV 254
Query: 304 LSLSVGPNSPPATTKTTFLNPFDVTLL--------AAVKAGVFVAQAAGNGGP 348
+++SVG + A K V AAGN G
Sbjct: 255 INISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGI 307
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 9e-15
Identities = 27/149 (18%), Positives = 40/149 (26%), Gaps = 45/149 (30%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFV----------- 588
++ FS G N DI APG N
Sbjct: 348 NLSEFSNFGMN------------YTDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA 395
Query: 589 -GEGFALISGTSMAAPHIAGIAALVKQK-HPYWSPAAIKSALMTTTTKLDRASRPLQAQQ 646
+ +GT++A P ++G AL+ K H P L T +
Sbjct: 396 NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKN---------- 445
Query: 647 YSETEAMKLVTATPFDYGSGHVNPRAALD 675
YG G ++ AL+
Sbjct: 446 ----------NKPFSRYGHGELDVYKALN 464
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 30/225 (13%), Positives = 55/225 (24%), Gaps = 35/225 (15%)
Query: 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTK-RSFCNGKIIGAQ 210
I I +D F P + D + + +
Sbjct: 46 LGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGK 105
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAG--NNGIPVRMHGHEFGRASGMAP 268
A A P D + + H H + G ++ + G+AP
Sbjct: 106 EKE---EALEAVIP--DTKDRIVLNDHACHVTSTIVGQEHSPV------------FGIAP 148
Query: 269 RARIAVYKALYRLFG-----GFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLN 323
R+ + G ++ AID A+ G +I+ + + + + +
Sbjct: 149 NCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQ 208
Query: 324 PFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
V + GN P V A
Sbjct: 209 AIK----KCQDNNVLIVSPTGNNSN---ESWCLPAVLPGTLAVGA 246
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 2e-17
Identities = 34/140 (24%), Positives = 44/140 (31%), Gaps = 40/140 (28%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
FS G N K ILAPG I A ++GTS
Sbjct: 252 TPCHFSNWGGNNT----------KEGILAPGEEILGAQPCTEE---------PVRLTGTS 292
Query: 600 MAAPHIAGIAALVKQKHPY----WSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
MAAP + GI+AL+ A+++AL+ T D
Sbjct: 293 MAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE----------------- 335
Query: 656 VTATPFDYGSGHVNPRAALD 675
V P G VN A+
Sbjct: 336 VVEEPERCLRGFVNIPGAMK 355
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-18
Identities = 51/229 (22%), Positives = 70/229 (30%), Gaps = 72/229 (31%)
Query: 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSF 201
W G I VD+G+ +HP G VD D+
Sbjct: 22 QAWDIA-----EGSGAKIAIVDTGVQSNHPDLAGK---------VVGGWDFVDNDS---- 63
Query: 202 CNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAA--GNNGIPVRMHGHE 259
+P +G+GHG+H A IAA NN +
Sbjct: 64 ----------------------------TPQNGNGHGTHCAGIAAAVTNNSTGI------ 89
Query: 260 FGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKT 319
+G AP+A I + L G V I A G ++SLS+G + +
Sbjct: 90 ----AGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ 145
Query: 320 TFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
A G V AAGN G T +Y VA+
Sbjct: 146 AVNY--------AWNKGSVVVAAAGNAGN---TAPNYPAYYSNAIAVAS 183
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 46/136 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+ FS G + D+ APGS I++ + P +A +SGTS
Sbjct: 189 NKSSFSTYGSWV-------------DVAAPGSSIYSTY-PTS---------TYASLSGTS 225
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA PH+AG+A L+ + S + I++A+ T K+ T
Sbjct: 226 MATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS---------------------GT 262
Query: 660 PFDYGSGHVNPRAALD 675
+ G VN A+
Sbjct: 263 GTYWAKGRVNAYKAVQ 278
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 87.8 bits (217), Expect = 4e-18
Identities = 34/147 (23%), Positives = 48/147 (32%), Gaps = 40/147 (27%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAW--------SPNGTDEANFV 588
+VA FS+R + + APG I + + +
Sbjct: 324 GTFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATN 370
Query: 589 GEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYS 648
G + GTSMAAPH+ G+ A++ QK P P I+ L T +
Sbjct: 371 GGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------- 422
Query: 649 ETEAMKLVTATPFDYGSGHVNPRAALD 675
D G G V AAL
Sbjct: 423 -----------DHDTGYGLVKLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 1e-13
Identities = 46/239 (19%), Positives = 70/239 (29%), Gaps = 71/239 (29%)
Query: 137 LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPD 196
+G+ +W G +I++ VD+G+ HP
Sbjct: 141 IGVTQQLWEEASG-----TNIIVAVVDTGVDGTHPDL----------------------- 172
Query: 197 TKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAA-IAAGNNGIPVRM 255
G++I D G G+H A IAA +G +
Sbjct: 173 ------EGQVIAGYRP----AFDEELPAGTD---SSYGGSAGTHVAGTIAAKKDGKGI-- 217
Query: 256 HGHEFGRASGMAPRARIAVYKALYRLFG------GFVADVVAAIDQAVHDGVDILSLSVG 309
G+AP A+I V A I A G +++ S G
Sbjct: 218 --------VGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWG 269
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
T K F A++ GV + +AGN + Y P + VAA
Sbjct: 270 GWGYSYTMKEAFDY--------AMEHGVVMVVSAGNNT--SDSHHQYPAGYPGVIQVAA 318
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 5e-18
Identities = 48/265 (18%), Positives = 75/265 (28%), Gaps = 59/265 (22%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
+ G G+ ++ D+G+ H +RGK
Sbjct: 13 AQ-SSYGLY--GQGQIVAVADTGLDTGRNDSSMH--------EAFRGK------------ 49
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGR 262
A + D +GHG+H A GN
Sbjct: 50 ----------------ITALYALGRTNNANDTNGHGTHVAGSVLGNG-----------ST 82
Query: 263 ASGMAPRARIAVYKALYRL--FGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTT 320
GMAP+A + + GG +++ QA G I + S G + TT
Sbjct: 83 NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWG--AAVNGAYTT 140
Query: 321 FLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY--SPWITTVAAAIDDRRYKNHLNL 378
D K + + AAGN GP T+ + + TV A + R
Sbjct: 141 DSRNVD---DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYAD 197
Query: 379 GNGKILAGIGLSPATHGNRTFTLVA 403
+ P G ++A
Sbjct: 198 NINHVAQFSSRGPTKDGRIKPDVMA 222
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-17
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 33/151 (21%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN--GTDEANFVGEGFALISG 597
VA FS+RGP KPD++APG+ I +A S + +A + G
Sbjct: 201 HVAQFSSRGPTKDGRI-------KPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGG 253
Query: 598 TSMAAPHIAGIAALVKQKHP-----YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEA 652
TSMA P +AG A +++ P+ +K+AL+ +
Sbjct: 254 TSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY------------- 300
Query: 653 MKLVTATPFDYGSGHVNPRAALDPGLIFDAG 683
+ G G V +L+ + ++
Sbjct: 301 ------PNGNQGWGRVTLDKSLNVAYVNESS 325
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 51/271 (18%), Positives = 82/271 (30%), Gaps = 79/271 (29%)
Query: 111 LQRAPGVKSVERDWKVRRLTTHTPEFLGLP----TGVWPTGGGFDRAGEDIVIGFVDSGI 166
+++ + + D + P G+ VW G +IG +D+G
Sbjct: 1 MRKFRLIPYKQVDKVSA--LSEVPM--GVEIVEAPAVWRASAK----GAGQIIGVIDTGC 52
Query: 167 YPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAV 226
HP Y G
Sbjct: 53 QVDHPDLAERIIGGVNLTTDYGG------------------------------------- 75
Query: 227 DFASPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGF 285
D + D +GHG+H A +AA G V G+AP+A + + KAL G
Sbjct: 76 DETNFSDNNGHGTHVAGTVAAAETGSGV----------VGVAPKADLFIIKALSGDGSGE 125
Query: 286 VADVVAAIDQAV------HDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFV 339
+ + AI AV + + I+++S+G + AV V V
Sbjct: 126 MGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVKY--------AVSNNVSV 177
Query: 340 AQAAGNGGPFPKTLVSYS-----PWITTVAA 365
AAGN G + ++ + V A
Sbjct: 178 VCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-16
Identities = 29/141 (20%), Positives = 47/141 (33%), Gaps = 47/141 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+++ F+ I DI+APG I + + +G A +SGT+
Sbjct: 214 RLSDFTNTNEEI-------------DIVAPGVGIKSTYLDSGY----------AELSGTA 250
Query: 600 MAAPHIAGIAALVKQKHP-----YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMK 654
MAAPH+AG AL+ S I + L+ T +
Sbjct: 251 MAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIG------------------ 292
Query: 655 LVTATPFDYGSGHVNPRAALD 675
TA G ++ +
Sbjct: 293 -FTAQAEGNGFLTLDLVERIT 312
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 9e-18
Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 46/136 (33%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
++A FS G + D++APG I + +A +SGTS
Sbjct: 190 RLASFSNYGTWV-------------DVVAPGVDIVSTI-TGN---------RYAYMSGTS 226
Query: 600 MAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659
MA+PH+AG+AAL+ + + I+ A+ T K+ T
Sbjct: 227 MASPHVAGLAALLASQGR--NNIEIRQAIEQTADKIS---------------------GT 263
Query: 660 PFDYGSGHVNPRAALD 675
+ G +N A+
Sbjct: 264 GTYFKYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 1e-17
Identities = 49/228 (21%), Positives = 71/228 (31%), Gaps = 71/228 (31%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
W G I +D+G+ HP Y F
Sbjct: 23 AWDVTKG----SSGQEIAVIDTGVDYTHPDLDGKVIKGY------------------DFV 60
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAA--GNNGIPVRMHGHEF 260
+ P+D + HG+H A IAA NN +
Sbjct: 61 DND-----------------------YDPMDLNNHGTHVAGIAAAETNNATGI------- 90
Query: 261 GRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTT 320
+GMAP RI +AL R G ++D+ AI A G ++++LS+G + T +
Sbjct: 91 ---AGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENA 147
Query: 321 FLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
A G V AAGN G + + V A
Sbjct: 148 VNY--------AWNKGSVVVAAAGNNGS---STTFEPASYENVIAVGA 184
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 30/111 (27%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI APG I P+ SGTS A ++G+ A + +P + +
Sbjct: 248 DIAAPGQNITFLR-PDA---------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATEL 297
Query: 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
K L+ + K +N A+
Sbjct: 298 KRTLLESADKYPSLVDK--------------------VTEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-13
Identities = 27/225 (12%), Positives = 54/225 (24%), Gaps = 61/225 (27%)
Query: 137 LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPD 196
+GL +V+ VDSG+
Sbjct: 30 IGLTETTMSLTDK----NTPVVVSVVDSGVAFIGG------------------------- 60
Query: 197 TKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMH 256
+ F + +P HG+ A++ A GI
Sbjct: 61 -----LSDSEFAKFSFTQDG------SPFPV-KKSEALYIHGTAMASLIASRYGI----- 103
Query: 257 GHEFGRASGMAPRARIAVYKALYRLFGGFVA---DVVAAIDQAVHDGVDILSLSVGPNSP 313
G+ P A I+ + + + + + I+++S G
Sbjct: 104 -------YGVYPHALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGV 156
Query: 314 PATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP 358
+ + ++ + A GN G + L +
Sbjct: 157 ASASVW-----TELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQR 196
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 5e-16
Identities = 46/246 (18%), Positives = 81/246 (32%), Gaps = 50/246 (20%)
Query: 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSF 201
VW G G+++V+ VD+GI H ++ G +
Sbjct: 23 KVWDMGFT----GQNVVVAVVDTGILHH-RDLNAN---------VLPGYDFISNSQISLD 68
Query: 202 CNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAI--AAGNNGIPVRMHGHE 259
+G+ + D HGSH A A NN I V
Sbjct: 69 GDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGV------ 122
Query: 260 FGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV----------HDGVDILSLSVG 309
+G+A A++ +AL R GG+ +D+ + A + ++++S+G
Sbjct: 123 ----AGVAYGAKVVPVRALGR-CGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLG 177
Query: 310 PNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA- 365
+ + T ++ A + G V AAGN ++ + +V A
Sbjct: 178 SDGQCSYNAQTMID-------RATRLGALVVVAAGNEN--QNASNTWPTSCNNVLSVGAT 228
Query: 366 AIDDRR 371
R
Sbjct: 229 TSRGIR 234
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 40/140 (28%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
A FS G ++ D+ APG I + +GT + ++ ++GTS
Sbjct: 233 IRASFSNYGVDV-------------DLAAPGQDILSTV-DSGTRRPV--SDAYSFMAGTS 276
Query: 600 MAAPHIAGIAALVKQK----HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
MA PH++G+AALV + +PA +K L++TT+ +
Sbjct: 277 MATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA------------- 323
Query: 656 VTATPFDYGSGHVNPRAALD 675
GSG V+ AA++
Sbjct: 324 -------LGSGIVDAEAAVN 336
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 80.0 bits (197), Expect = 1e-15
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG I A S T F SGTS AA H+AGIAA++ P + A +
Sbjct: 208 DLFAPGEDIIGASSDCST--------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAEL 259
Query: 625 KSALMTTTTK 634
+ L+ + K
Sbjct: 260 RQRLIHFSAK 269
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 35/234 (14%), Positives = 63/234 (26%), Gaps = 73/234 (31%)
Query: 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGA 209
G + + +D+ I H G+++
Sbjct: 21 PPDGGSLVEVYLLDTSIQSDHREIE-----------------------------GRVMVT 51
Query: 210 QHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPR 269
F+ D HG+H A + +G + +G+A
Sbjct: 52 DFENVPEEDGTRFHR-----QASKCDSHGTHLAGVVSGRD--------------AGVAKG 92
Query: 270 ARIAVYKALYRLFGGFVADVVAAIDQAVHD------GVDILSLSVG-PNSPPATTKTTFL 322
A + + L G V+ + ++ G ++ L + S
Sbjct: 93 ASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSR--------- 143
Query: 323 NPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ +AGV + AAGN YSP + TV A D+
Sbjct: 144 -VLNAACQRLARAGVVLVTAAGNFRDDACL---YSPASAPEVITVGATNAQDQP 193
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI APGS I ++W + + ISGTSMA+PH+AG+AAL ++P SPA +
Sbjct: 198 DIYAPGSSITSSWYTSNS--------ATNTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 625 KSALMTTTTK 634
+ L T T
Sbjct: 250 TNLLKTRATA 259
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 43/229 (18%), Positives = 67/229 (29%), Gaps = 76/229 (33%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
D G + +D+G+ H FG
Sbjct: 27 DYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------------- 52
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA 270
A+ ++ + D +GHG+H A G G+A
Sbjct: 53 -------ASSGYDFIDNDYDATDCNGHGTHVAGTIG--------------GSTYGVAKNV 91
Query: 271 RIAVYKALYRLFGGFVADVVAAIDQAV--HDGVDILSLSVG-PNSPPATTKTTFLNPFDV 327
+ + L G + V+A I+ G + ++S+G S D
Sbjct: 92 NVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQ----------ATDD 141
Query: 328 TLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ AAV AG+ AAGN YSP TV + +D R
Sbjct: 142 AVNAAVAAGITFVVAAGNDNSNACN---YSPARAADAITVGSTTSNDSR 187
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APGS I +AW G ISGTSMA PH+AG+AAL Q++ +P +
Sbjct: 196 DLFAPGSQIKSAWYDGGY----------KTISGTSMATPHVAGVAALYLQENNGLTPLQL 245
Query: 625 KSALMTTTTK 634
L + ++
Sbjct: 246 TGLLNSRASE 255
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 76/229 (33%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
+ G + +D+G+ +H FG
Sbjct: 25 NFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------------- 50
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA 270
+ ++ + A D +GHG+H A G G+A
Sbjct: 51 -------SVSGYDFVDNDADSSDCNGHGTHVAGTIG--------------GSQYGVAKNV 89
Query: 271 RIAVYKALYRLFGGFVADVVAAIDQAV--HDGVDILSLSVG-PNSPPATTKTTFLNPFDV 327
I + L G + V++ +D G + ++S+G S D
Sbjct: 90 NIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQST----------ALDS 139
Query: 328 TLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ A+++GV AAGN SP TV + D R
Sbjct: 140 AVQGAIQSGVSFMLAAGNSNADACN---TSPARVPSGVTVGSTTSSDSR 185
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
D+ APG+ I +AW + T ++GTSMA PH+AG+AAL +++P +PA++
Sbjct: 196 DLFAPGASIPSAWYTSDT--------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASV 247
Query: 625 KSALMTTTTK 634
SA++ T
Sbjct: 248 ASAILNGATT 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 9e-11
Identities = 42/230 (18%), Positives = 67/230 (29%), Gaps = 78/230 (33%)
Query: 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGA 209
+ G + + +D+GI H FG
Sbjct: 26 YTATGRGVNVYVIDTGIRTTHREFGGR--------------------------------- 52
Query: 210 QHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPR 269
A ++ + D +GHG+H A G G+A
Sbjct: 53 --------ARVGYDALGG--NGQDCNGHGTHVAGTIGGVT--------------YGVAKA 88
Query: 270 ARIAVYKALYRLFGGFVADVVAAIDQAVHDGVD--ILSLSVG-PNSPPATTKTTFLNPFD 326
+ + L G + V+A +D + + ++S+G S D
Sbjct: 89 VNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVST----------ALD 138
Query: 327 VTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ ++ AGV A AAGN +YSP TV A D R
Sbjct: 139 NAVKNSIAAGVVYAVAAGNDN---ANACNYSPARVAEALTVGATTSSDAR 185
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 5e-15
Identities = 46/247 (18%), Positives = 74/247 (29%), Gaps = 84/247 (34%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
VW G + I + +D+G+ HP
Sbjct: 20 VWSITDG---SVSVIQVAVLDTGVDYDHPDL----------------------------- 47
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTA-AIAAGNNGIPVRMHGHEFG 261
I + D +GHG+H IAA NN I V
Sbjct: 48 AANIAWCVSTL-------RGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGV-------- 92
Query: 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD--------------------GV 301
G+AP +I + L G +D+ I+QA+
Sbjct: 93 --VGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAA 150
Query: 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SP 358
+++S+S+G + + ++ A AG+ + A+GN G SY P
Sbjct: 151 EVISMSLGGPADDSYLYD--------MIIQAYNAGIVIVAASGNEGA---PSPSYPAAYP 199
Query: 359 WITTVAA 365
+ V A
Sbjct: 200 EVIAVGA 206
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 57/149 (38%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
+A FS R P ++ APG I + + P+ + + GT+
Sbjct: 212 NIASFSNRQP---------------EVSAPGVDILSTY-PDD---------SYETLMGTA 246
Query: 600 MAAPHIAGIAALVKQKH-------------PYWSPAAIKSALMTTTTKLDRASRPLQAQQ 646
MA PH++G+ AL++ + S ++ L T L
Sbjct: 247 MATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDAD--- 303
Query: 647 YSETEAMKLVTATPFDYGSGHVNPRAALD 675
YG G V A+
Sbjct: 304 ----------------YGYGVVRAALAVQ 316
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 7e-15
Identities = 31/139 (22%), Positives = 46/139 (33%), Gaps = 50/139 (35%)
Query: 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALIS 596
A +AL + G + + G + + +
Sbjct: 338 RATGLALKAKLGQST-------------TVSNQG------------------NQDYEYYN 366
Query: 597 GTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLV 656
GTSMA PH++G+A LV HP S + +++AL T L A R Q
Sbjct: 367 GTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQ------------- 413
Query: 657 TATPFDYGSGHVNPRAALD 675
G G +N AA
Sbjct: 414 ------TGYGMINAVAAKA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 5e-14
Identities = 45/222 (20%), Positives = 71/222 (31%), Gaps = 67/222 (30%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
D + I +DSG H N +
Sbjct: 18 DSQAGNRTICIIDSGYDRSHNDL-----------------------------NANNVTG- 47
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAA-IAAGNNGIPVRMHGHEFGRASGMAP- 268
+ ++ P + + HG+H A IAA N V G+ P
Sbjct: 48 ---------TNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGV----------VGVMPN 88
Query: 269 -RARIAVYKALYRLFGGFVADVVAAIDQAV-HDGVDILSLSVGPNSPPATTKTTFLNPFD 326
A I + K G+ + +VAAID V G +++++S+G + T +
Sbjct: 89 QNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNT--- 145
Query: 327 VTLLAAVKAGVFVAQAAGNGGPFPKTLVSY---SPWITTVAA 365
GV + AAGN G + SY + +VAA
Sbjct: 146 -----HYNNGVLLIAAAGNAGD---SSYSYPASYDSVMSVAA 179
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 19/83 (22%)
Query: 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTS 599
A FS + +I PG I + + I G S
Sbjct: 185 DHAAFSQYTDQV-------------EISGPGEAILSTVTVGEG------RLADITIGGQS 225
Query: 600 MAAPHIAGIAALVKQKHPYWSPA 622
+ + L Y
Sbjct: 226 YFSNGVVPHNRLTPSGTSYAPAP 248
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI APG+ I + W T ISGTSMA PHIAG+AA + S A+
Sbjct: 201 DIFAPGTSITSTWIGGRT----------NTISGTSMATPHIAGLAAYLFGLEGG-SAGAM 249
Query: 625 KSALMTTTTK 634
+ T +TK
Sbjct: 250 CGRIQTLSTK 259
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 5e-10
Identities = 44/235 (18%), Positives = 69/235 (29%), Gaps = 86/235 (36%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
AG + +D+G+ HP F
Sbjct: 28 TSAGAGACVYVIDTGVEDTHPDFEG----------------------------------- 52
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA 270
RA ++ DG GHG+H A + G+A +
Sbjct: 53 ---------RAKQIKSYASTARDGHGHGTHCAGTIG--------------SKTWGVAKKV 89
Query: 271 RIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI---------LSLSVGPNSPPATTKTTF 321
I K L G +++++A +D D +SL G ++
Sbjct: 90 SIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSA--------- 140
Query: 322 LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ +GVFVA AAGN + + SP + TV A +D R
Sbjct: 141 --ALNQAAARLQSSGVFVAVAAGNDN---RDAANTSPASEPTVCTVGATDSNDVR 190
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 565 DILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAI 624
DI PG+ I + W T ISGTSMA PH+AG+AA + + A+
Sbjct: 200 DIFGPGTDILSTWIGGST----------RSISGTSMATPHVAGLAAYLMTLGKT-TAASA 248
Query: 625 KSALMTTTTK 634
+ T K
Sbjct: 249 CRYIADTANK 258
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-10
Identities = 49/235 (20%), Positives = 71/235 (30%), Gaps = 86/235 (36%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
+ AG+ + +D+GI HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEFEG----------------------------------- 51
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA 270
RA + S DG+GHG+H A R G+A +
Sbjct: 52 ---------RAQMVKTYYYSSRDGNGHGTHCAGTVG--------------SRTYGVAKKT 88
Query: 271 RIAVYKALYRLFGGFVADVVAAIDQAVHDGVDI---------LSLSVGPNSPPATTKTTF 321
++ K L G + ++A +D D + LSL G +S
Sbjct: 89 QLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSS--------- 139
Query: 322 LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP----WITTVAA-AIDDRR 371
+ +GV VA AAGN + YSP + TV A DRR
Sbjct: 140 --SVNSAAARLQSSGVMVAVAAGNNNADARN---YSPASEPSVCTVGASDRYDRR 189
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 1e-08
Identities = 89/589 (15%), Positives = 168/589 (28%), Gaps = 160/589 (27%)
Query: 73 HDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTH 132
H M + +T + Y YK +++ F + K V+ D L+
Sbjct: 5 HHM------DFETGEHQYQYKDILSVFEDAFVDNF--------DCKDVQ-DMPKSILSKE 49
Query: 133 -TPEFLGLPTGVWPTGGGFD---RAGEDIVIGFVDSGIYPHHP----SFGSHHTDPYGPV 184
+ V T F E++V FV+ + ++ + P
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 185 PKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGD-GHGSHT-A 242
Y + + + + F + Q + + A PA + +DG G G A
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVA 167
Query: 243 AIAAGNNGIPVRMHGHEF----GRASGMAPRARIAVYKALYRLFGGFV---ADVVAAIDQ 295
+ + +M F + +P + + + L +D + I
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 296 AVHDGVD----ILSLSVGPNS-----------------------------------PPAT 316
+H +L N AT
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 317 TKTTFLNPFDVTLLAAVKAGVFVAQAAGNG-GPFPKTLVSYSPW-ITTVAAAIDDR--RY 372
T L+ +TL + + P+ +++ +P ++ +A +I D +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 373 KNHLNLGNGKILAGIG-----LSPATHGNRTFTL-VAANDVLLDSSVMK--YSASDCQRP 424
N ++ K+ I L PA + L V + + ++ +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 425 E-VLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPV 483
V+NK L YS L + T
Sbjct: 405 MVVVNK--------LHKYS--------------------------LVEKQPKEST----- 425
Query: 484 PVGIPGILITDVTKSMD--------LVDYYNTSTTRDWTGRVK--------SFKGTGTIG 527
+ IP I + ++ ++ +VD+YN T D + S IG
Sbjct: 426 -ISIPSIYL-ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-----IG 478
Query: 528 DGLMPILHKSAPQVALFSARGPNI-KDFSFQDADLLKPDIL--APGSLI 573
L I H ++ LF + DF F + + A GS++
Sbjct: 479 HHLKNIEH--PERMTLF----RMVFLDFRFLEQKIRHDSTAWNASGSIL 521
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 5e-08
Identities = 43/293 (14%), Positives = 70/293 (23%), Gaps = 80/293 (27%)
Query: 115 PGVKSVERDWKVRRLTTHT-PEF--------LGLP------TGVWPTGGGFDRAGEDIVI 159
P S+ + + P F P +W G +V
Sbjct: 3 PMDSSLLPVKEAEDKLSINDPLFERQWHLVNPSFPGSDINVLDLWYNNIT----GAGVVA 58
Query: 160 GFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA 219
VD G+ + K + F +
Sbjct: 59 AIVDDGLDYENEDL----------------KDNFCAEGSWDFNDNT-------------- 88
Query: 220 RAFNPAVDFASPLDGDGHGSHTAAI--AAGNNGIPVRMHGHEFGRASGMAPRARIAVYKA 277
L D HG+ A A N G+ A+I+ +
Sbjct: 89 ------NLPKPRLSDDYHGTRCAGEIAAKKGNNFCG----------VGVGYNAKISGIRI 132
Query: 278 LYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKA-- 335
L D A++ + D DI S S GP + + +
Sbjct: 133 LSG--DITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRD 189
Query: 336 --GVFVAQAAGNGGPFPKTLVSY-----SPWITTVAAAIDDRRYKNHLNLGNG 381
G A+GNGG +Y S + T+ A + + +
Sbjct: 190 SKGAIYVFASGNGGTRGDN-CNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSA 241
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 589 GEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
G GTS AAP AG+ L+ + +P + ++ + + L+
Sbjct: 262 GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLE 309
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 45/262 (17%), Positives = 73/262 (27%), Gaps = 68/262 (25%)
Query: 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRS 200
W G G IV+ +D GI +HP DP
Sbjct: 28 KEAWAQGFT----GHGIVVSILDDGIEKNHPDL----------------AGNYDPGASFD 67
Query: 201 FCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAI--AAGNNGIPVRMHGH 258
+ + ++ + HG+ A A NNG+
Sbjct: 68 VNDQD-----------------PDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCG----- 105
Query: 259 EFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DGVDILSLSVGP------- 310
G+A ARI R+ G V D V A ++ + + I S S GP
Sbjct: 106 -----VGVAYNARIGGV----RMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTV 156
Query: 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGG----PFPKTLVSYSPWITTVAAA 366
+ P + F G A+GNGG + S + ++++A
Sbjct: 157 DGPARLAEEAFFR---GVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSA 213
Query: 367 IDDRRYKNHLNLGNGKILAGIG 388
+ + +
Sbjct: 214 TQFGNVPWYSEACSSTLATTYS 235
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 568 APGSLIWAAWSPNGTDEANFV-----GEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
A S + +S +E V + +GTS +AP AGI AL + + +
Sbjct: 225 ACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWR 284
Query: 623 AIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
++ ++ T+ + + YG G ++ A +
Sbjct: 285 DMQHLVVQTSKPAH--------LNADDWATNGVGRKVSHSYGYGLLDAGAMVA 329
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P Length = 114 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 9e-06
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 54 KIDTTSELVTSYARHLEKKHDMLLGLLFERDTYKKLYSYKHLINGFAVHITPDQAEILQR 113
K +T AR L+ + K L+ + L+ GF V ++ D E+ +
Sbjct: 45 KEETHLSQSERTARRLQAQA------ARRGYLTKILHVFHGLLPGFLVKMSGDLLELALK 98
Query: 114 APGVKSVERDWKVR 127
P V +E D V
Sbjct: 99 LPHVDYIEEDSSVF 112
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P Length = 124 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 87 KKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVR 127
K L+ + L+ GF V ++ D E+ + P V +E D V
Sbjct: 82 KILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 817 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.84 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.02 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.59 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.58 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.45 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.4 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.69 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.36 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.69 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 93.77 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 90.78 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 90.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 89.78 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 88.52 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.19 | |
| 3idu_A | 127 | Uncharacterized protein; all beta-protein, structu | 81.56 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 81.39 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 80.37 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-104 Score=925.86 Aligned_cols=622 Identities=35% Similarity=0.575 Sum_probs=526.9
Q ss_pred cCCCCcccCCCC--CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCC-CCCcccccCCCCCCccCCCce
Q 003469 130 TTHTPEFLGLPT--GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVP-KYRGKCEVDPDTKRSFCNGKI 206 (817)
Q Consensus 130 ~~~s~~~~g~~~--~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki 206 (817)
++++|+|+|+.. .+|.. +++|+||+|||||||||++||+|.+. ++.+++ +|+|.|+.+.+|....||+|+
T Consensus 1 Tt~s~~flgl~~~~~~w~~----~~~G~gViVaViDTGId~~Hp~f~d~---g~~p~p~~wkg~c~~g~~f~~~~cN~ki 73 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPA----SGLGQDVIVAVLDSGIWPESASFQDD---GMPEIPKRWKGICKPGTQFNASMCNRKL 73 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHH----HGGGTTCEEEEEESCBCTTSGGGCCT---TCCCCCTTCCCCBCCBTTBCTTSCCSSE
T ss_pred CCCChHHcCCCCchhhHhc----cCCCCCCEEEEEccCCCCCChhhccC---CCCCCccccccccccCccccccccccce
Confidence 357788999863 47776 68999999999999999999999987 466777 999999999999999999999
Q ss_pred eeeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCH
Q 003469 207 IGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFV 286 (817)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~ 286 (817)
+++++|.++..... .+...+..+++|.+||||||||||||+...+.+..|+..+.+.||||+|+|++||+++.. ++..
T Consensus 74 ig~~~f~~~~~~~~-~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~-g~~~ 151 (649)
T 3i6s_A 74 IGANYFNKGILAND-PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFT 151 (649)
T ss_dssp EEEEECCHHHHHHC-TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETT-EECH
T ss_pred eeeEeccCcccccc-cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCC-CCCH
Confidence 99999987765433 344455667889999999999999999877777778877889999999999999999986 4889
Q ss_pred HHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeee
Q 003469 287 ADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAA 366 (817)
Q Consensus 287 ~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~ 366 (817)
+++++||+||+++|+||||||||.... ....+++..++++|+++|++||+||||+|+...++++.+||+|+|||+
T Consensus 152 ~~i~~Ai~~A~~~gvdVIn~SlG~~~~-----~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAs 226 (649)
T 3i6s_A 152 SDLIAAMDQAVADGVDMISISYGYRFI-----PLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226 (649)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSC-----CGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCCccCCc-----ccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeee
Confidence 999999999999999999999998632 346789999999999999999999999999988899999999999999
Q ss_pred ecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccc--cccEEEEecccc
Q 003469 367 IDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLV--EGNILLCGYSFN 444 (817)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~--~gki~~~~~~~~ 444 (817)
+.+|.|...+.+++++.+.+.++++.......+|+++.. ....|.. ..++...+ +|||++|.+
T Consensus 227 t~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~-----------~~~~C~~-~~l~~~~vdl~GkIvlc~~--- 291 (649)
T 3i6s_A 227 HTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK-----------TLSDCSS-EELLSQVENPENTIVICDD--- 291 (649)
T ss_dssp ECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT-----------TTTTCCC-HHHHTTSSSGGGCEEEECC---
T ss_pred ecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc-----------ccccccc-ccccccccccCCcEEEEeC---
Confidence 999999999999999999999998877667789998854 3456764 34666666 999999987
Q ss_pred cccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeee
Q 003469 445 FVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTG 524 (817)
Q Consensus 445 ~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 524 (817)
|.+.+.++..+++++|+.++|++|+. .......+.+|.+.+.. ++++.|+.|+++... +.. .+.|..+
T Consensus 292 ---g~~~~~~k~~~~~~~Ga~g~i~~n~~----~~~~~~~~~~P~~~v~~-~~g~~i~~yi~s~~~--~~a-~i~~~~t- 359 (649)
T 3i6s_A 292 ---NGDFSDQMRIITRARLKAAIFISEDP----GVFRSATFPNPGVVVNK-KEGKQVINYVKNSVT--PTA-TITFQET- 359 (649)
T ss_dssp ---CSCHHHHHHHHHHHTCSEEEEECCCG----GGGGCCCCCSCEEEECH-HHHHHHHHHHHTCSS--CEE-EEEEEEE-
T ss_pred ---CCccHHHHHHHHHhcCceEEEEecCc----cccccccCcCCEEEEcH-HHHHHHHHHHhcCCC--ceE-EEeecce-
Confidence 57788999999999999999999986 23345567899999986 999999999987542 111 1223222
Q ss_pred EecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCc----cCCceEeecCccc
Q 003469 525 TIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANF----VGEGFALISGTSM 600 (817)
Q Consensus 525 ~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~----~~~~y~~~sGTSm 600 (817)
.......+.++.||||||+.+ .++++||||+|||++|+|+++......... ....|..||||||
T Consensus 360 -------~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSM 427 (649)
T 3i6s_A 360 -------YLDTKPAPVVAASSARGPSRS-----YLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSM 427 (649)
T ss_dssp -------ECCCSSCCEECTTSCCSSCTT-----CTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHH
T ss_pred -------eeccCCCCcccccCCCCCCCC-----CCCccCCeEEeCCCCeEeecCCCCCccccccccccccceeccccccc
Confidence 122355789999999999986 356999999999999999997643211100 2268999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeee
Q 003469 601 AAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIF 680 (817)
Q Consensus 601 AaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~ 680 (817)
|||||||++|||||+||+|+|++||++||+||++++..+.|+.+.. ...+++++.||+|+||+.+|++|+|||
T Consensus 428 AaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i~~~~-------~~~~a~~~~~GaG~vn~~~A~~pGLvy 500 (649)
T 3i6s_A 428 AAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSD-------NNKAATPLDMGAGHVDPNRALDPGLVY 500 (649)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBCEETT-------TSSBCCHHHHTTCBCCHHHHTCCSEEC
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcccccc-------cCCcCCcCCCCeeeeCHHHhcCccccc
Confidence 9999999999999999999999999999999999999898887542 355788899999999999999999999
Q ss_pred ecCchhhhhccccCCCCCceeeecccCcc----cCCCCCCCCcCCCCcEEEee-ecce-----EEEEEEEEEcCCC-ceE
Q 003469 681 DAGYEDYLGFLCTTPGIDIHEIRNYTNQP----CNYSMGHPYNFNTPSITVAH-LVKT-----QVVTRTVTNVAEE-ETY 749 (817)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~ln~ps~~~~~-~~~~-----~~~~~tv~n~~~~-~ty 749 (817)
|+..+||++|||.+++ +..+|+.+++.. |.. .+.|||||||++.. +.+. ++|+|||||+|+. .+|
T Consensus 501 d~~~~dy~~flc~~~y-~~~~i~~~~~~~~~~~C~~---~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y 576 (649)
T 3i6s_A 501 DATPQDYVNLLCSLNF-TEEQFKTIARSSASHNCSN---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATY 576 (649)
T ss_dssp CCCHHHHHHHHHTTCC-CHHHHHHHHTTTSCC-CCC---CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEE
T ss_pred cCCchhHHHhhhcCCC-CcccceeeecCCCcCCCCC---chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEE
Confidence 9999999999999986 888888887653 764 57799999999987 5555 8999999999998 999
Q ss_pred EEEEEcCCCcEEEEecCeEEEc-CCCEEEEEEEEEEecC-CCceEEEEEEEEeC-CCcEEEEeEEEEee
Q 003469 750 SMSARMQPAIAIEVNPPAMTLK-PGASRKFTVTLTVRSV-TGTYSFGEICMKGS-RGHKVNIPVIAQGN 815 (817)
Q Consensus 750 ~~~~~~~~~~~v~~~~~~~tv~-~g~~~~~~v~~~~~~~-~~~~~~G~i~~~~~-~~~~l~iP~~~~~~ 815 (817)
++.++.|.|+.|+|+|.+|++. .||+++|+|+|+.... .+.+.+|+|+|+++ +.|.||+|++++..
T Consensus 577 ~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 577 KAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999999999999999996 8999999999998643 45678999999974 78999999998754
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-97 Score=871.29 Aligned_cols=610 Identities=35% Similarity=0.581 Sum_probs=482.5
Q ss_pred cCCCCcccCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCC-CCCcccccCCCCCCccCCCceee
Q 003469 130 TTHTPEFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVP-KYRGKCEVDPDTKRSFCNGKIIG 208 (817)
Q Consensus 130 ~~~s~~~~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n~ki~~ 208 (817)
++++|+|+|++...|.. ..+|+||+|||||||||++||+|.+. ++.+++ +|+|.|+.+.++ .||+|+++
T Consensus 1 tt~s~~flGl~~~~~~~----~~~G~gViVgViDTGId~~Hp~f~d~---g~~~~~~~w~g~~~~~~~~---~~n~k~ig 70 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRR----SQVESNIVVGVLDTGIWPESPSFDDE---GFSPPPPKWKGTCETSNNF---RCNRKIIG 70 (621)
T ss_dssp CCSHHHHTTCCTTCCCC----HHHHTTCEEEEEESCBCTTSGGGCCT---TCCCCCTTCCCCBCCSSSC---CCCSSEEE
T ss_pred CCCChhHcCCCcccccc----CCCCCCCEEEEEecCCCCCChhhcCC---CCCCcccccccccccCCCc---ccCcceee
Confidence 46789999998878876 57999999999999999999999986 455666 999999988776 59999999
Q ss_pred eeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHH
Q 003469 209 AQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVAD 288 (817)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~d 288 (817)
+++|..+. .....+..+|+|++||||||||||||+.....+..|...+.++||||+|+|++||+|++. ++..++
T Consensus 71 ~~~~~~~~-----~~~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~-g~~~~d 144 (621)
T 3vta_A 71 ARSYHIGR-----PISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTD 144 (621)
T ss_dssp EEECCCSS-----SCCTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETT-EECHHH
T ss_pred eeecccCC-----ccCCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCC-CCCHHH
Confidence 99996542 122334567889999999999999999877766777777788999999999999999986 578899
Q ss_pred HHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeec
Q 003469 289 VVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAID 368 (817)
Q Consensus 289 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~ 368 (817)
+++||++|+++|+||||||||+..+.+ ...++++.++++|+++||+||+||||+|+...++++.+||+++|++++.
T Consensus 145 i~~a~~~a~~~g~dVin~SlG~~~~~~----~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~ 220 (621)
T 3vta_A 145 ILAAYDDAIADGVDIISLSVGGANPRH----YFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220 (621)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCCCGGG----GGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECC
T ss_pred HHHHHHHHHHhCCCEEEecCCCCCCCC----cCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeec
Confidence 999999999999999999999876543 3578899999999999999999999999999999999999999999999
Q ss_pred CcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccC
Q 003469 369 DRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTG 448 (817)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g 448 (817)
++.+...+.++++..+.+..+... ....++++...+...... .......|. ...++...++|||++|.+.
T Consensus 221 d~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~v~gkivl~~~~------ 290 (621)
T 3vta_A 221 DRKFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGF-DKSTSRFCT-DKSVNPNLLKGKIVVCEAS------ 290 (621)
T ss_dssp SEEEEEEEEETTSCEEEEBCCCCS--CCEEECEEETTTSCCTTC-CHHHHTTTC-TTCSCGGGTTTSEEECSSC------
T ss_pred cccceeeEEeccCceeeeeecccC--CCcccccccccccccccc-ccccccccc-ccccccccccceEEEEecC------
Confidence 999999999999999988776543 356677777655432111 112233454 3557778899999999864
Q ss_pred cchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecC
Q 003469 449 TASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGD 528 (817)
Q Consensus 449 ~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (817)
+..+..+....|+.+++++++.... ...+.+|...+.. +++..+..|+....... . ..+..
T Consensus 291 ---~~~~~~~~~~~Ga~gvi~~~~~~~~-----~~~~~lP~~~v~~-~~g~~i~~~~~~~~~~~--a--~~~~~------ 351 (621)
T 3vta_A 291 ---FGPHEFFKSLDGAAGVLMTSNTRDY-----ADSYPLPSSVLDP-NDLLATLRYIYSIRSPG--A--TIFKS------ 351 (621)
T ss_dssp ---CCHHHHHHHHTTCSEEEEECSCCSS-----CCCCSSSEEEECH-HHHHHHHHHHHHHSSCC--E--EECCC------
T ss_pred ---CChhHHhhhhcceeEEEEEecCCCc-----ccccccceEEECH-HHHHHHHHHHhccCCcc--e--EEecc------
Confidence 2345667788999999999875432 2356789988877 89999999887653211 1 11111
Q ss_pred CCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHH
Q 003469 529 GLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGI 608 (817)
Q Consensus 529 ~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 608 (817)
........+.++.||||||+.. ..+++||||+|||++|+|+++..........+..|..|||||||||||||+
T Consensus 352 --~~~~~~~~~~va~FSSrGP~~~-----~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~~~~y~~~SGTSMAaPhVAGv 424 (621)
T 3vta_A 352 --TTILNASAPVVVSFSSRGPNRA-----TKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGI 424 (621)
T ss_dssp --EEEECTTCCCBCTTSCCCSCTT-----CTTSCSCCEEEECSSEEEECCSSSCBTTBCCCCSEEEECSHHHHHHHHHHH
T ss_pred --eEeccCCCCceeeecCCCCCCC-----CCCeeccccccCCcceEeecCccccccCcCCCCcceEecCccccchhhhhH
Confidence 1122345679999999999864 235899999999999999997654433333456899999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeeeecCchhhh
Q 003469 609 AALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYL 688 (817)
Q Consensus 609 aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~ 688 (817)
+|||||+||+|+|++||++||+||++++..+. ++.+++||+|+||+.+|++|+||||+..+||+
T Consensus 425 aALl~q~~P~~spa~IksaLmtTA~~~~~~~~----------------~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~ 488 (621)
T 3vta_A 425 ATYVKTYNPTWSPAAIKSALMTTASPMNARFN----------------PQAEFAYGSGHVNPLKAVRPGLVYDANESDYV 488 (621)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTC----------------TTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHhcCCcccccCC----------------CCCchhcCCCccCHHHhcCCCeEeecccchhh
Confidence 99999999999999999999999999875443 45678999999999999999999999999999
Q ss_pred hccccCCCCCceeeecccC--cccCC-CCCCCCcCCCCcEEEe---eecceEEEEEEEEEcCCC-ceEEEEEEcCCCcEE
Q 003469 689 GFLCTTPGIDIHEIRNYTN--QPCNY-SMGHPYNFNTPSITVA---HLVKTQVVTRTVTNVAEE-ETYSMSARMQPAIAI 761 (817)
Q Consensus 689 ~~~~~~~~~~~~~i~~~~~--~~~~~-~~~~~~~ln~ps~~~~---~~~~~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v 761 (817)
.|||.+++ +..+++.+++ ..|.. ......|||+|||++. ++..+++|+|||||++.. .||+++++.|.|++|
T Consensus 489 ~~lc~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v 567 (621)
T 3vta_A 489 KFLCGQGY-NTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTI 567 (621)
T ss_dssp ------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEE
T ss_pred hhhcccCC-CchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEE
Confidence 99999976 8888887775 34553 3345779999999985 445678999999999999 999999999999999
Q ss_pred EEecCeEEEc-CCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEEEeEEEEe
Q 003469 762 EVNPPAMTLK-PGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPVIAQG 814 (817)
Q Consensus 762 ~~~~~~~tv~-~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP~~~~~ 814 (817)
+|+|.+|+++ .||+++|+|||+.. ..+.+++|+|+|+ ++.|.||+|++|++
T Consensus 568 ~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l~w~-d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 568 SVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASLVWS-DGVHYVRSPITITS 619 (621)
T ss_dssp EEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEEEEE-CSSCCCEEEEEEEC
T ss_pred EEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEEEEE-cCCEEEEeCEEEEE
Confidence 9999999996 68999999999864 4567899999997 57899999999975
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-77 Score=731.43 Aligned_cols=542 Identities=20% Similarity=0.270 Sum_probs=405.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccC----------CCCCCccCCCc
Q 003469 136 FLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVD----------PDTKRSFCNGK 205 (817)
Q Consensus 136 ~~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~n~k 205 (817)
+++++ .+|.. +++|+||+|||||||||++||+|.+.. .|++.|... ......+||+|
T Consensus 3 ~i~~~-~~w~~----~~~G~GV~VaVIDTGId~~Hp~f~~~~--------~~~~~~~~~~~~~~~~~~~g~~~g~~~n~K 69 (926)
T 1xf1_A 3 PSQVK-TLQEK----AGKGAGTVVAVIDAGFDKNHEAWRLTD--------KTKARYQSKEDLEKAKKEHGITYGEWVNDK 69 (926)
T ss_dssp TTCCH-HHHHH----HCSCTTCEEEEEESCCTTCCCCCSCCS--------CCCSSCCHHHHHHHHHHTTTCCCCBCCSSS
T ss_pred ccccH-HHHhc----cCCCCCcEEEEEecCCCCCCHhHcCCC--------CCcccccchhhhcccccccCcccccccCcc
Confidence 34543 57766 589999999999999999999999653 465555321 11123489999
Q ss_pred eeeeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC-C
Q 003469 206 IIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-G 284 (817)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~-~ 284 (817)
++++++|.++ ....|+.||||||||||||+.....+. .+.+.||||+|+|++||++++.+. +
T Consensus 70 ii~~~~~~~~-------------~~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~ 132 (926)
T 1xf1_A 70 VAYYHDYSKD-------------GKTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLAD 132 (926)
T ss_dssp CCEEEESCCC-------------SCCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHH
T ss_pred cceeeccccC-------------CCCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCC
Confidence 9999998542 112288999999999999986433211 235789999999999999987543 3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC--------------
Q 003469 285 FVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-------------- 350 (817)
Q Consensus 285 ~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-------------- 350 (817)
..+++++||+||+++|+||||||||+..++. ..+.+.+..++++|+++|++||+||||+|...
T Consensus 133 ~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~---~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~ 209 (926)
T 1xf1_A 133 YARNYAQAIRDAINLGAKVINMSFGNAALAY---ANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYG 209 (926)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCSSCCCTT---CCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCB
T ss_pred cHHHHHHHHHHHHHhCCcEEEECCCCCCCCc---cccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcc
Confidence 5578999999999999999999999865432 22566788999999999999999999999632
Q ss_pred -CCccCCCCcEEEEeeeecCcceeeEEEe-CCCcEEEeeecC--CCCCCCceEEEEEcccccccccccccCCCCCCCccc
Q 003469 351 -KTLVSYSPWITTVAAAIDDRRYKNHLNL-GNGKILAGIGLS--PATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEV 426 (817)
Q Consensus 351 -~~~~~~~~~vitVgA~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 426 (817)
...++.+||+|+|||++.++.+...+.+ +++....+..+. ........|++++... .|.. ..
T Consensus 210 tv~~PA~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-------------g~~~-~~ 275 (926)
T 1xf1_A 210 VVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-------------GTKE-DD 275 (926)
T ss_dssp CCCSCTTTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-------------SCST-TT
T ss_pred eecCcccCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-------------CCCc-cc
Confidence 1224468999999999999999888887 444333333321 1222356788888543 2532 22
Q ss_pred cccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHh
Q 003469 427 LNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYN 506 (817)
Q Consensus 427 ~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~ 506 (817)
+ .+++|||++|.| |.|.+.+++.+++++||.++|++|+..............+|...+.. +++..|..
T Consensus 276 ~--~~v~Gkivl~~r------g~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~-~~g~~l~~--- 343 (926)
T 1xf1_A 276 F--KDVKGKIALIER------GDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISR-KDGLLLKD--- 343 (926)
T ss_dssp T--TTCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECH-HHHHHHHH---
T ss_pred h--hhcCCeEEEEEC------CCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeH-HHHHHHHh---
Confidence 3 579999999987 57889999999999999999999976543222234567899988877 78877763
Q ss_pred ccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCC
Q 003469 507 TSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEAN 586 (817)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~ 586 (817)
. + ...++|..+.. .......+.++.||||||+.++ ++||||+|||++|+|+++
T Consensus 344 -~----~-~~ti~~~~~~~------~~~~~~~~~~a~FSSrGp~~~~-------~lKPDI~APG~~I~sa~~-------- 396 (926)
T 1xf1_A 344 -N----P-QKTITFNATPK------VLPTASGTKLSRFSSWGLTADG-------NIKPDIAAPGQDILSSVA-------- 396 (926)
T ss_dssp -C----S-SCEEEECSSCE------EEECSSCSBCCTTSCCCBCTTS-------CBSCCEEEECCCEEESSS--------
T ss_pred -C----C-ceEEEecccce------ecccCCcceeccccCCCCCCCC-------ccCceEECCCCCEEeecc--------
Confidence 1 1 12234433221 1123446799999999999875 999999999999999984
Q ss_pred ccCCceEeecCccchhHHHHHHHHHHHH----hCCCCCHHH----HHHHHhccccccccCCCccccccchhhhhhccccC
Q 003469 587 FVGEGFALISGTSMAAPHIAGIAALVKQ----KHPYWSPAA----IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTA 658 (817)
Q Consensus 587 ~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~ls~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~ 658 (817)
++.|..|||||||||||||+||||+| .||+|+|+| ||++||+||+++...+ ....+
T Consensus 397 --~~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~--------------~~~~~ 460 (926)
T 1xf1_A 397 --NNKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDED--------------EKAYF 460 (926)
T ss_dssp --CSSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG--------------GTEEC
T ss_pred --CCcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhcCCCcccCC--------------CCccC
Confidence 45899999999999999999999965 599999997 9999999999875432 12346
Q ss_pred CCCcccccccCcccccCCCeeeecCchhhhhccccCCCCCceeeecccCcccCCCCCCCCcCCCCcEEEeeecceEEEEE
Q 003469 659 TPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTR 738 (817)
Q Consensus 659 ~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~ 738 (817)
++++||+|+||+.+|+++.+ |+|..++ +-+++.+.++..+.+++|
T Consensus 461 ~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~------------------------~~~~i~l~~~~~~~~~~~ 505 (926)
T 1xf1_A 461 SPRQQGAGAVDAKKASAATM-----------YVTDKDN------------------------TSSKVHLNNVSDKFEVTV 505 (926)
T ss_dssp CHHHHTTCBCCHHHHHHCSE-----------EEEESSS------------------------SCSCEEEEEECSEEEEEE
T ss_pred ChhccCCCccCHHHhcCCCe-----------EEEcCCC------------------------CcceeeccccCccEEEEE
Confidence 77899999999999999865 4565432 112455555666778999
Q ss_pred EEEEcCCC---ceEEEEEEc--CCCcEEEEe--------cCeEEEcCCCEEEEEEEEEEec---------CCCceEEEEE
Q 003469 739 TVTNVAEE---ETYSMSARM--QPAIAIEVN--------PPAMTLKPGASRKFTVTLTVRS---------VTGTYSFGEI 796 (817)
Q Consensus 739 tv~n~~~~---~ty~~~~~~--~~~~~v~~~--------~~~~tv~~g~~~~~~v~~~~~~---------~~~~~~~G~i 796 (817)
||+|+++. .+|++.+.. +.+..+++. +.+|||+||++++|+|+|+++. ..+.+++|+|
T Consensus 506 tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i 585 (926)
T 1xf1_A 506 NVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFV 585 (926)
T ss_dssp EEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEE
T ss_pred EEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEE
Confidence 99999985 466666543 445555543 4579999999999999999862 2446899999
Q ss_pred EEEeCC-C-cEEEEeEEEEe
Q 003469 797 CMKGSR-G-HKVNIPVIAQG 814 (817)
Q Consensus 797 ~~~~~~-~-~~l~iP~~~~~ 814 (817)
+|++++ . +.||+||+++.
T Consensus 586 ~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 586 RFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEESSTTSCCCEEEEEEEEE
T ss_pred EEEeCCCCCCEEEeeeEEEe
Confidence 999643 3 45999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-60 Score=547.95 Aligned_cols=338 Identities=32% Similarity=0.531 Sum_probs=273.3
Q ss_pred ceEEEEeccccceEEEEcCHHHHHHH-----------HcCCCceEEEccceeccccCC-----CCcccCCCCCCCCCCCC
Q 003469 86 YKKLYSYKHLINGFAVHITPDQAEIL-----------QRAPGVKSVERDWKVRRLTTH-----TPEFLGLPTGVWPTGGG 149 (817)
Q Consensus 86 ~~~~~~y~~~~ng~sv~~~~~~~~~L-----------~~~p~V~~V~~~~~~~~~~~~-----s~~~~g~~~~~w~~~~~ 149 (817)
.+++++|. .|+||+++++++++++| +++|+|++|++++.+++.... ....+++ ..+|..
T Consensus 60 ~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 134 (539)
T 3afg_A 60 AKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMA-TNMWNL--- 134 (539)
T ss_dssp CEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBC-SCCBCC---
T ss_pred CeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCc-HhHHhc---
Confidence 57788886 79999999999999999 889999999999998765322 1122332 356765
Q ss_pred CCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCC
Q 003469 150 FDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (817)
Q Consensus 150 ~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (817)
+++|+||+|||||||||++||+|.++ +++.++|.++ ..
T Consensus 135 -g~~G~gv~VaViDtGid~~Hpdl~~~-----------------------------i~~~~d~~~~------------~~ 172 (539)
T 3afg_A 135 -GYDGSGITIGIIDTGIDASHPDLQGK-----------------------------VIGWVDFVNG------------KT 172 (539)
T ss_dssp -SCCCTTCEEEEEESBCCTTSGGGTTT-----------------------------EEEEEETTTC------------CS
T ss_pred -CCCCCCcEEEEEecCCCCCChHHhCC-----------------------------EeeeEECCCC------------CC
Confidence 68999999999999999999999864 5666676542 23
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc----CCcEEE
Q 003469 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD----GVDILS 305 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~----g~dVIn 305 (817)
.+.|++||||||||||||+.... .+.+.||||+|+|+++|++++.+.++.+++++||+||+++ |++|||
T Consensus 173 ~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin 245 (539)
T 3afg_A 173 TPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVIN 245 (539)
T ss_dssp SCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEE
T ss_pred CCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEE
Confidence 56789999999999999974321 1346899999999999999987667889999999999975 999999
Q ss_pred ecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469 306 LSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 306 ~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
||||..... ...+.+..+++++.++|++||+||||+|.... ..++..+++|+|||++.
T Consensus 246 ~SlG~~~~~-----~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~--------------- 305 (539)
T 3afg_A 246 LSLGSSQSS-----DGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK--------------- 305 (539)
T ss_dssp ECCCCCSCC-----CSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT---------------
T ss_pred eCCCCCCCC-----ccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC---------------
Confidence 999986431 24578999999999999999999999998643 45678899999998531
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.+.++.
T Consensus 306 --------------------------------------------------------------------------~~~~a~ 311 (539)
T 3afg_A 306 --------------------------------------------------------------------------YDVITD 311 (539)
T ss_dssp --------------------------------------------------------------------------TSCBCS
T ss_pred --------------------------------------------------------------------------Cccccc
Confidence 126889
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHH
Q 003469 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 623 (817)
||||||+.++ ++||||+|||++|+++++..... .......|..++|||||||||||++|||+|++|+|++++
T Consensus 312 fSs~Gp~~~~-------~~kpdi~APG~~I~s~~~~~~~~-~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ 383 (539)
T 3afg_A 312 FSSRGPTADN-------RLKPEVVAPGNWIIAARASGTSM-GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDK 383 (539)
T ss_dssp SSCCCCCTTC-------BCCCSEEEECSSEEEECCTTCCC-SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred ccCCCCCCCC-------CCcccEecCcCCEEeeccCCCCC-CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 9999999876 99999999999999998643210 001123699999999999999999999999999999999
Q ss_pred HHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCC
Q 003469 624 IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPG 677 (817)
Q Consensus 624 ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 677 (817)
||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 384 vk~~L~~tA~~~~~~~------------------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 384 VKTALIETADIVKPDE------------------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp HHHHHHHHSBCSSGGG------------------CSBTTTBTCBCCHHHHHTGG
T ss_pred HHHHHHhhCccCCCCC------------------CCccCccCCccCHHHHhhhc
Confidence 9999999999875321 23468999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-58 Score=512.62 Aligned_cols=320 Identities=25% Similarity=0.403 Sum_probs=261.2
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceeccccCCC-----------CcccCC----CCCCCCCCCC
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHT-----------PEFLGL----PTGVWPTGGG 149 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s-----------~~~~g~----~~~~w~~~~~ 149 (817)
..+++++|. .+++|+++++++++++|+++|+|++|++++.++++.... ...|++ .+.+|..
T Consensus 23 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~--- 98 (395)
T 2z2z_A 23 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSI--- 98 (395)
T ss_dssp TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGT---
T ss_pred CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhh---
Confidence 467888887 599999999999999999999999999999887643211 011221 1256765
Q ss_pred CCCCCCc--eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCC
Q 003469 150 FDRAGED--IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVD 227 (817)
Q Consensus 150 ~~~tG~G--V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~ 227 (817)
+ +|+| |+|||||||||++||+|.++ +..+++|..+... .+
T Consensus 99 -~-~G~g~~v~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~~~~-------~~ 140 (395)
T 2z2z_A 99 -T-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------------IAWCVSTLRGKVS-------TK 140 (395)
T ss_dssp -C-SSCCTTCEEEEEESCBCTTCTTTGGG-----------------------------EEEEEECGGGCCB-------CC
T ss_pred -c-CCCCCcEEEEEEcCCCCCCChhHhhc-----------------------------cccCccccCCccc-------CC
Confidence 4 9999 99999999999999999964 4445555433100 00
Q ss_pred CCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc--------
Q 003469 228 FASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-------- 299 (817)
Q Consensus 228 ~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-------- 299 (817)
..++.|++||||||||||+|..+ + .++.||||+|+|+.+|++++.+.+..+++++||+||+++
T Consensus 141 ~~~~~d~~gHGT~vAgiia~~~n------~---~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~ 211 (395)
T 2z2z_A 141 LRDCADQNGHGTHVIGTIAALNN------D---IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKD 211 (395)
T ss_dssp HHHHBCSSSHHHHHHHHHHCCCS------S---SSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTT
T ss_pred CCCCCCCCCCHHHHHHHHHeecC------C---CceEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCcccccccc
Confidence 01245789999999999999732 1 136899999999999999887667889999999999998
Q ss_pred ------------CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeee
Q 003469 300 ------------GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367 (817)
Q Consensus 300 ------------g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~ 367 (817)
+++|||||||.... ...+..+++++.++|++||+||||+|.....+|+..+++|+|||++
T Consensus 212 ~~~~~~~~~~~~~~~Vin~S~G~~~~--------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~ 283 (395)
T 2z2z_A 212 GDGIIAGDPDDDAAEVISMSLGGPAD--------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAID 283 (395)
T ss_dssp CSSCCTTCTTSCCCSEEEECEEBSCC--------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEEC
T ss_pred ccccccccccCCCCeEEEecCCCCCC--------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEec
Confidence 99999999997432 3468889999999999999999999988778888999999999853
Q ss_pred cCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEeccccccc
Q 003469 368 DDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVT 447 (817)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~ 447 (817)
.
T Consensus 284 ~------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 284 S------------------------------------------------------------------------------- 284 (395)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEec
Q 003469 448 GTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIG 527 (817)
Q Consensus 448 g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (817)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHH
Q 003469 528 DGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAG 607 (817)
Q Consensus 528 ~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 607 (817)
.+.++.||+||| +|+|||++|+|+++ ++.|..++|||||||||||
T Consensus 285 ----------~~~~a~fS~~G~---------------~v~APG~~i~s~~~----------~~~y~~~sGTS~AaP~VaG 329 (395)
T 2z2z_A 285 ----------NDNIASFSNRQP---------------EVSAPGVDILSTYP----------DDSYETLMGTAMATPHVSG 329 (395)
T ss_dssp ----------TSCBCTTSCSSC---------------SEEEECSSEEEEET----------TTEEEEEESHHHHHHHHHH
T ss_pred ----------CCCCCcccCCCC---------------CEEeCCCCeeeecC----------CCceEecCCHHHHHHHHHH
Confidence 126789999998 56999999999984 4689999999999999999
Q ss_pred HHHHHHHhCC-------------CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccccc
Q 003469 608 IAALVKQKHP-------------YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674 (817)
Q Consensus 608 ~aALl~q~~p-------------~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al 674 (817)
++|||+|++| .|++.+||++|++||+++...+ .++.||+|+||+.+|+
T Consensus 330 ~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-------------------~~~~~G~G~vd~~~A~ 390 (395)
T 2z2z_A 330 VVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------------------WDADYGYGVVRAALAV 390 (395)
T ss_dssp HHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS-------------------SBTTTBTCBCCHHHHH
T ss_pred HHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC-------------------CCCCccCceeCHHHHH
Confidence 9999999999 9999999999999999875433 2358999999999998
Q ss_pred CC
Q 003469 675 DP 676 (817)
Q Consensus 675 ~~ 676 (817)
+.
T Consensus 391 ~~ 392 (395)
T 2z2z_A 391 QA 392 (395)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=501.93 Aligned_cols=337 Identities=20% Similarity=0.245 Sum_probs=259.4
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHc-CCCceEEEccceeccccCCCCc----------ccC-----CCCCCCCCCC
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQR-APGVKSVERDWKVRRLTTHTPE----------FLG-----LPTGVWPTGG 148 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~-~p~V~~V~~~~~~~~~~~~s~~----------~~g-----~~~~~w~~~~ 148 (817)
..+++++|. .|++|+++++++++++|++ +|+|++|++++.+++....... .|+ ....+|..
T Consensus 65 g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~-- 141 (471)
T 3t41_A 65 SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD-- 141 (471)
T ss_dssp TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG--
T ss_pred CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc--
Confidence 467788885 5999999999999999999 9999999999888775432211 111 12235554
Q ss_pred CCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCC
Q 003469 149 GFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDF 228 (817)
Q Consensus 149 ~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~ 228 (817)
+++|+||+|||||||||++||+|.++. |.+.. .++....|... ..+...+.
T Consensus 142 --~~~G~gv~VaViDtGid~~Hp~~~~~~---------~~~~~-------------~~~~~~~~~~~-----~~~~~~~~ 192 (471)
T 3t41_A 142 --LPKHANTKIAIIDTGVMKNHDDLKNNF---------STDSK-------------NLVPLNGFRGT-----EPEETGDV 192 (471)
T ss_dssp --CCSSCCCCEEEEESCCCTTCTTTTTTB---------CTTCE-------------ECCCTTCGGGC-----CTTCCCCT
T ss_pred --cCCCCCcEEEEEeCCCCCCChhHhcCc---------ccCCc-------------ccccCCCccCC-----CcccCCCC
Confidence 689999999999999999999999862 21100 01111111110 00111223
Q ss_pred CCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCCcEEEecC
Q 003469 229 ASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSV 308 (817)
Q Consensus 229 ~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~dVIn~Sl 308 (817)
..+.|++||||||||||+|++ .+.||||+|+|+++|++++ +.+..+++++||+||+++|++||||||
T Consensus 193 ~~~~d~~gHGT~vAgiiaa~g------------~~~GvAp~a~l~~~kv~~~-~~~~~~~i~~ai~~a~~~g~~Vin~S~ 259 (471)
T 3t41_A 193 HDVNDRKGHGTMVSGQTSANG------------KLIGVAPNNKFTMYRVFGS-KKTELLWVSKAIVQAANDGNQVINISV 259 (471)
T ss_dssp TCCCCSSSHHHHHHHHHHCBS------------SSBCSSTTSCEEEEECCSS-SCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCcCCCCccchhhheeecCC------------ceeEECCCCeEEEEEeccC-CCCcHHHHHHHHHHHHhCCCCEEEeCC
Confidence 356789999999999999874 2589999999999999987 467888999999999999999999999
Q ss_pred CCCCCCC----CCc----cCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC------------------ccCCCCcEEE
Q 003469 309 GPNSPPA----TTK----TTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT------------------LVSYSPWITT 362 (817)
Q Consensus 309 G~~~~~~----~~~----~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~------------------~~~~~~~vit 362 (817)
|...... ... ....+.+..+++.+.++|++||+||||+|..... .|+.++++|+
T Consensus 260 G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vit 339 (471)
T 3t41_A 260 GSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVT 339 (471)
T ss_dssp CEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEE
T ss_pred CCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEE
Confidence 9732100 000 1233578889999999999999999999986432 5667888888
Q ss_pred EeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecc
Q 003469 363 VAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYS 442 (817)
Q Consensus 363 VgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~ 442 (817)
|||++.
T Consensus 340 VgA~~~-------------------------------------------------------------------------- 345 (471)
T 3t41_A 340 VGSTDQ-------------------------------------------------------------------------- 345 (471)
T ss_dssp EEEECT--------------------------------------------------------------------------
T ss_pred EEeeCC--------------------------------------------------------------------------
Confidence 888531
Q ss_pred cccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeee
Q 003469 443 FNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKG 522 (817)
Q Consensus 443 ~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 522 (817)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCc----------------------EEEeeCCC
Q 003469 523 TGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSL----------------------IWAAWSPN 580 (817)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~----------------------I~Sa~~~~ 580 (817)
.+.+++||+|||+. |||+|||++ |++++
T Consensus 346 ---------------~~~~a~fS~~G~~~------------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~--- 395 (471)
T 3t41_A 346 ---------------KSNLSEFSNFGMNY------------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTA--- 395 (471)
T ss_dssp ---------------TSSBCTTCCBCTTT------------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEEC---
T ss_pred ---------------CCCCCCccCCCCCC------------CeEEecCCCcccccccccccccccccccCceeEecC---
Confidence 12688999999963 499999987 88887
Q ss_pred CCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC-CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCC
Q 003469 581 GTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP-YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTAT 659 (817)
Q Consensus 581 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~ 659 (817)
.++.|..++|||||||||||++|||+|++| +++|++||++|++||++... .+
T Consensus 396 -------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~--------------------~~ 448 (471)
T 3t41_A 396 -------NNGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN--------------------KP 448 (471)
T ss_dssp -------TTSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC--------------------CC
T ss_pred -------CCCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC--------------------CC
Confidence 456899999999999999999999999999 89999999999999997642 23
Q ss_pred CCcccccccCcccccCCC
Q 003469 660 PFDYGSGHVNPRAALDPG 677 (817)
Q Consensus 660 ~~~~G~G~vn~~~Al~~~ 677 (817)
+..||+|+||+.+|++..
T Consensus 449 ~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 449 FSRYGHGELDVYKALNVA 466 (471)
T ss_dssp HHHHTTCBBCHHHHTTTT
T ss_pred cCccccChhCHHHHHHHH
Confidence 358999999999999853
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-56 Score=515.98 Aligned_cols=301 Identities=23% Similarity=0.266 Sum_probs=40.9
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceeccccCCCCcccCCCC--------CCCCCCCCCCCCCCc
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHTPEFLGLPT--------GVWPTGGGFDRAGED 156 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~~~~s~~~~g~~~--------~~w~~~~~~~~tG~G 156 (817)
..++.+.|.++|+||+++++++++++|+++|+|++||+++.+..+. .. |++.. ..|.. +++|+|
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~~-~p---WgL~~i~~~~~~~~~w~~----~~~G~G 179 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQS-IP---WNLERITPPRYRADEYQP----PDGGSL 179 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccCC-CC---cchhhccccccccccccc----CCCCCC
Confidence 4578899999999999999999999999999999999999876521 11 33321 23443 579999
Q ss_pred eEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCCCCCCC
Q 003469 157 IVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDG 236 (817)
Q Consensus 157 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 236 (817)
|+|||||||||++||+|.++.. |. ++++..+. +.......+.|++|
T Consensus 180 V~VaVIDTGId~~HpdL~gr~~--------~~--------------------~~~~~~d~------dg~~~~~~~~D~~G 225 (692)
T 2p4e_P 180 VEVYLLDTSIQSDHREIEGRVM--------VT--------------------DFENVPEE------DGTRFHRQASKCDS 225 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEcCCCCCCChhhcCceE--------ec--------------------ccccccCC------CCCcccCCCCCCCC
Confidence 9999999999999999998620 10 00110000 00000124568999
Q ss_pred CCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc------CCcEEEecCCC
Q 003469 237 HGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD------GVDILSLSVGP 310 (817)
Q Consensus 237 HGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~------g~dVIn~SlG~ 310 (817)
|||||||||+|+. .||||+|+|+++||+++.+.++.+++++||+|++++ |++|||||||+
T Consensus 226 HGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg 291 (692)
T 2p4e_P 226 HGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG 291 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCC
Confidence 9999999999962 699999999999999987678889999999999986 89999999996
Q ss_pred CCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC-ccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeeec
Q 003469 311 NSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT-LVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGL 389 (817)
Q Consensus 311 ~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~ 389 (817)
. +...+..+++++.++|++||+||||+|.+... .|+..+++|+|||++.+...
T Consensus 292 ~---------~s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~----------------- 345 (692)
T 2p4e_P 292 G---------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C---------CcHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-----------------
Confidence 3 23467788888999999999999999987543 47788999999986421100
Q ss_pred CCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEE
Q 003469 390 SPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVL 469 (817)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~ 469 (817)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCC
Q 003469 470 AVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGP 549 (817)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp 549 (817)
...-+.||+|||
T Consensus 346 --------------------------------------------------------------------a~~ss~fSn~G~ 357 (692)
T 2p4e_P 346 --------------------------------------------------------------------VTLGTLGTNFGR 357 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------cccccccCCCCC
Confidence 000123889987
Q ss_pred CCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 003469 550 NIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALM 629 (817)
Q Consensus 550 ~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~ 629 (817)
.+ ||+|||++|+|+++.. ++.|..++|||||||||||++|||+|++|+|+|+|||++|+
T Consensus 358 ~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~ 416 (692)
T 2p4e_P 358 CV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLI 416 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ce-------------eEEecCCcEEeeccCC--------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 54 9999999999998542 35789999999999999999999999999999999999999
Q ss_pred ccccccc
Q 003469 630 TTTTKLD 636 (817)
Q Consensus 630 ~TA~~~~ 636 (817)
+||.+..
T Consensus 417 ~tA~~~~ 423 (692)
T 2p4e_P 417 HFSAKDV 423 (692)
T ss_dssp -------
T ss_pred Hhccccc
Confidence 9998753
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=502.92 Aligned_cols=340 Identities=24% Similarity=0.298 Sum_probs=253.5
Q ss_pred ceEEEEeccccceEEEEcCH---H-HHHHHHc--CCCceEEEccceecccc----CCCC---------------------
Q 003469 86 YKKLYSYKHLINGFAVHITP---D-QAEILQR--APGVKSVERDWKVRRLT----THTP--------------------- 134 (817)
Q Consensus 86 ~~~~~~y~~~~ng~sv~~~~---~-~~~~L~~--~p~V~~V~~~~~~~~~~----~~s~--------------------- 134 (817)
.++++++. .+++++++++. + .+++|++ +|+|++|||+..+++.. ...+
T Consensus 53 ~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T 1r6v_A 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCcccccccccccccccccccccccc
Confidence 45666664 68999999875 3 3466764 89999999997765431 0000
Q ss_pred --cc-----cCCCCCC-CCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCce
Q 003469 135 --EF-----LGLPTGV-WPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKI 206 (817)
Q Consensus 135 --~~-----~g~~~~~-w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki 206 (817)
.. ++++ .+ |.. ++|+||+|||||||||++||+|.++. +
T Consensus 132 ~~~~W~l~~I~~~-~a~w~~-----~tG~gV~VAVIDTGVd~~HpdL~~~~---------~------------------- 177 (671)
T 1r6v_A 132 SNELWGLEAIGVT-QQLWEE-----ASGTNIIVAVVDTGVDGTHPDLEGQV---------I------------------- 177 (671)
T ss_dssp GGGCHHHHHTTCC-HHHHHH-----CSCTTCEEEEEESCCBTTSGGGTTTB---------C-------------------
T ss_pred cccCCchhccCCc-hhhhhc-----cCCCCCEEEEEeCCCCCCCccccccE---------E-------------------
Confidence 01 1111 23 544 69999999999999999999999761 1
Q ss_pred eeeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecC----C
Q 003469 207 IGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL----F 282 (817)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~----~ 282 (817)
.++++..+. ..+ ...+..|++||||||||||||+.+ + .++.||||+|+|+++|+++.. +
T Consensus 178 -~g~~~~~~~-----~~p--~~~d~~d~~gHGThVAGiIAa~~n------g---~gv~GVAP~A~I~~vkv~~~~~~~~g 240 (671)
T 1r6v_A 178 -AGYRPAFDE-----ELP--AGTDSSYGGSAGTHVAGTIAAKKD------G---KGIVGVAPGAKIMPIVIFDDPALVGG 240 (671)
T ss_dssp -CEEEGGGTE-----EEC--TTCBCCTTCSHHHHHHHHHHCCCS------S---SSCCCSCTTSEEEEEESBCCHHHHCT
T ss_pred -ecccccCCC-----cCC--CCCCCccCCCcchhhhhhhhccCC------C---CceEEECCCCEEEEEEeccCccccCC
Confidence 111111100 000 112344678999999999999742 1 146899999999999999761 2
Q ss_pred C--CCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCc
Q 003469 283 G--GFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPW 359 (817)
Q Consensus 283 ~--~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~ 359 (817)
. ...+.+++||+||+++|++|||||||... +...+..++++|.++|++||+||||+|... ..+|+..++
T Consensus 241 ~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~--------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~ 312 (671)
T 1r6v_A 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG--------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPG 312 (671)
T ss_dssp TSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTT
T ss_pred CCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC--------CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCC
Confidence 2 23566899999999999999999999742 345788999999999999999999999875 567788999
Q ss_pred EEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEE
Q 003469 360 ITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLC 439 (817)
Q Consensus 360 vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~ 439 (817)
+|+|||++.+..
T Consensus 313 VItVgA~d~~g~-------------------------------------------------------------------- 324 (671)
T 1r6v_A 313 VIQVAALDYYGG-------------------------------------------------------------------- 324 (671)
T ss_dssp CEEEEEEEEETT--------------------------------------------------------------------
T ss_pred eEEEEEEcCCCC--------------------------------------------------------------------
Confidence 999999642110
Q ss_pred ecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEe
Q 003469 440 GYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKS 519 (817)
Q Consensus 440 ~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~ 519 (817)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCC--------CCccCCc
Q 003469 520 FKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDE--------ANFVGEG 591 (817)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~--------~~~~~~~ 591 (817)
...+++||++||.. ||+|||++|+|+++...... ....++.
T Consensus 325 ------------------~~~~a~fSn~G~~v-------------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~ 373 (671)
T 1r6v_A 325 ------------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGT 373 (671)
T ss_dssp ------------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCC
T ss_pred ------------------ceeeccccCCCCCe-------------eEEecCCCEEeecCCCCccccccccccccccCCCc
Confidence 00578999999976 99999999999987532110 0112458
Q ss_pred eEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcc
Q 003469 592 FALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPR 671 (817)
Q Consensus 592 y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 671 (817)
|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+. +..||+|+||+.
T Consensus 374 y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~-------------------d~~~G~G~vna~ 434 (671)
T 1r6v_A 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVKLD 434 (671)
T ss_dssp EEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC-------------------BTTTBTCBCCHH
T ss_pred eEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC-------------------CCCcccceeCHH
Confidence 9999999999999999999999999999999999999999998764432 347999999999
Q ss_pred cccCCCeeeecC
Q 003469 672 AALDPGLIFDAG 683 (817)
Q Consensus 672 ~Al~~~lv~~~~ 683 (817)
+|++..+..+..
T Consensus 435 ~Al~~~l~~~~~ 446 (671)
T 1r6v_A 435 AALQGPLPTQGG 446 (671)
T ss_dssp HHHHCCCCSSSE
T ss_pred HHhhhhcCCCCC
Confidence 999877655443
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=472.98 Aligned_cols=386 Identities=21% Similarity=0.279 Sum_probs=271.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +|+||+|||||||||++||+|.++ ++.++++..
T Consensus 15 ~~w~~------~g~gv~VaViDtGvd~~Hp~l~~~-----------------------------~~~~~~~~~------- 52 (441)
T 1y9z_A 15 VLSDS------QAGNRTICIIDSGYDRSHNDLNAN-----------------------------NVTGTNNSG------- 52 (441)
T ss_dssp SSCCT------TGGGCEEEEEESCCCTTSTTTTTS-----------------------------EEEECCCTT-------
T ss_pred hhhhc------CCCCcEEEEEcCCCCCCChhHhcC-----------------------------cccCcccCC-------
Confidence 57765 577999999999999999999975 111222211
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCC--cEEEEEeeecCCCCCHHHHHHHHHHHHHc
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA--RIAVYKALYRLFGGFVADVVAAIDQAVHD 299 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A--~L~~~kv~~~~~~~~~~di~~ai~~a~~~ 299 (817)
..++..+.|+.||||||||||+|..+. .++.||||+| +|+.+|+++..+.++.+++++||+||+++
T Consensus 53 ---~~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~ 120 (441)
T 1y9z_A 53 ---TGNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNS 120 (441)
T ss_dssp ---SCCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHT
T ss_pred ---CCCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHh
Confidence 011235668899999999999997421 1468999995 89999999886557788999999999999
Q ss_pred -CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 300 -GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 -g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
|++|||||||.... ...+..+++++.++|++||+||||+|.....+|+..+++|+|||++.+.....+...
T Consensus 121 ~g~~Vin~S~G~~~~--------~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~ 192 (441)
T 1y9z_A 121 GGANVVTMSLGGSGS--------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (441)
T ss_dssp TCCSEEEECCCBSCC--------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred cCCcEEEeCCCCCCC--------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccC
Confidence 99999999997532 246778999999999999999999998877888899999999999877543322222
Q ss_pred CCCcEEEe-----------------------eecCCCCC-C-CceEE--EEEcccccccccccccCCCCCCCc-cccccc
Q 003469 379 GNGKILAG-----------------------IGLSPATH-G-NRTFT--LVAANDVLLDSSVMKYSASDCQRP-EVLNKN 430 (817)
Q Consensus 379 ~~~~~~~~-----------------------~~~~~~~~-~-~~~~~--~~~~~~~~~~~~~~~~~~~~c~~~-~~~~~~ 430 (817)
+....+.. .+++.... + ...++ +.+..+... .........|... ..++..
T Consensus 193 g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~--g~~~~~~~~C~~~~~~~~~~ 270 (441)
T 1y9z_A 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN--ASATGALAECTVNGTSFSCG 270 (441)
T ss_dssp CTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCC--CEEEEEEEEEEEETTEEECC
T ss_pred CCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccc--cccccchhccccccccccCC
Confidence 22111111 11100000 0 00000 000000000 0001112346532 356778
Q ss_pred cccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCc-----cCCCCCCCCeEEEcCchhHHHHHHHH
Q 003469 431 LVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTK-----FDPVPVGIPGILITDVTKSMDLVDYY 505 (817)
Q Consensus 431 ~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~-----~~~~~~~~p~~~i~~~~~g~~l~~~~ 505 (817)
+++|||++|+|+... .....+.++..+++++|+.++|+|++....+.. .......+|.+.+.. ++|+.+..++
T Consensus 271 ~~~gkivl~~rg~~~-~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~-~~g~~l~~~~ 348 (441)
T 1y9z_A 271 NMANKICLVERVGNQ-GSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDR-ATGLALKAKL 348 (441)
T ss_dssp CCTTEEEEEECCSCS-SSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECH-HHHHHHHTTT
T ss_pred CccccEEEEeccccC-cccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeH-HHHHHHHHHh
Confidence 899999999985221 112356788999999999999999987554421 122345788888876 7888776544
Q ss_pred hccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCC
Q 003469 506 NTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEA 585 (817)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~ 585 (817)
.+ .+. +++.
T Consensus 349 ~~---------------------------------------------------------~~t------~~~~-------- 357 (441)
T 1y9z_A 349 GQ---------------------------------------------------------STT------VSNQ-------- 357 (441)
T ss_dssp TS---------------------------------------------------------EEE------EEEE--------
T ss_pred cC---------------------------------------------------------Ccc------cccc--------
Confidence 21 000 0111
Q ss_pred CccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccc
Q 003469 586 NFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGS 665 (817)
Q Consensus 586 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ 665 (817)
.++.|..+||||||||||||++|||+|+||+|+|++||++||+||++++..+. +++||+
T Consensus 358 --~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g~-------------------~~~~G~ 416 (441)
T 1y9z_A 358 --GNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR-------------------DNQTGY 416 (441)
T ss_dssp --EEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC-------------------BTTTBT
T ss_pred --cCCCceeecccccCCcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCCC-------------------cccccc
Confidence 34589999999999999999999999999999999999999999998865432 357999
Q ss_pred cccCcccccCCCeeeecCchhhhhccccCCC
Q 003469 666 GHVNPRAALDPGLIFDAGYEDYLGFLCTTPG 696 (817)
Q Consensus 666 G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~ 696 (817)
|+||+.+|+ ||+.|+|..+.
T Consensus 417 G~vn~~~A~-----------~~~~~lc~~~~ 436 (441)
T 1y9z_A 417 GMINAVAAK-----------AYLDESCTGPT 436 (441)
T ss_dssp CBCCHHHHH-----------HHHHHCTTCC-
T ss_pred cccCHHHHH-----------HHHHhhhcCCC
Confidence 999999995 68899998764
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-52 Score=438.64 Aligned_cols=258 Identities=29% Similarity=0.437 Sum_probs=211.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +..|+||+|||||||||++||+|.++ ++.+++|.+.
T Consensus 22 ~aw~~----~~g~~gv~VaViDtGvd~~hp~l~~~-----------------------------~~~~~~~~~~------ 62 (280)
T 1dbi_A 22 YAWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYDFVDN------ 62 (280)
T ss_dssp HHTTT----CCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEETTTT------
T ss_pred HHHhh----cCCCCCCEEEEEeCCcCCCChhhccC-----------------------------cccceeccCC------
Confidence 57877 45667999999999999999999964 5556666542
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
..++.|..||||||||||+|...+. ..+.||||+|+|+.+|+++..+.+..+++++||+||+++|+
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~ 128 (280)
T 1dbi_A 63 ------DYDPMDLNNHGTHVAGIAAAETNNA--------TGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGA 128 (280)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCcHHHHHHHHhCcCCCC--------CcceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCC
Confidence 1345688999999999999975321 13689999999999999988767888999999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||... ....+..+++++.++|++||+||||+|......|+..+++|+|||++.
T Consensus 129 ~Vin~S~G~~~--------~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T 1dbi_A 129 EVINLSLGCDC--------HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp SEEEECCSSCC--------CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred CEEEeCCCCCC--------CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------
Confidence 99999999743 235788899999999999999999999877777888999999998531
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
.+.+
T Consensus 188 ----------------------------------------------------------------------------~~~~ 191 (280)
T 1dbi_A 188 ----------------------------------------------------------------------------YDRL 191 (280)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 1267
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++||.. ||+|||++|+++. .++.|..++|||||||||||++|||++ |++++
T Consensus 192 ~~~S~~G~~~-------------dv~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~ 246 (280)
T 1dbi_A 192 ASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS--QGRNN 246 (280)
T ss_dssp CTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH--TTCCH
T ss_pred CCCCCCCCCc-------------eEEEecCCeEeec----------CCCCEEEccCHHHHHHHHHHHHHHHHC--CCCCH
Confidence 8899999865 9999999999998 346899999999999999999999987 89999
Q ss_pred HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
.|||++|++||+++...+ ..||+|+||+.+|++
T Consensus 247 ~~v~~~L~~ta~~~~~~~---------------------~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 247 IEIRQAIEQTADKISGTG---------------------TYFKYGRINSYNAVT 279 (280)
T ss_dssp HHHHHHHHHTSBCCTTBT---------------------TTBSSEECCHHHHHT
T ss_pred HHHHHHHHHhCccCCCCC---------------------CcccCCEECHHHHhc
Confidence 999999999999875321 379999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=434.70 Aligned_cols=255 Identities=34% Similarity=0.495 Sum_probs=215.9
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||| .+||+|+. ..+++|..+
T Consensus 15 ~a~~~----g~~G~gv~VaViDtGi-~~h~~l~~-------------------------------~~~~~~~~~------ 52 (269)
T 1gci_A 15 AAHNR----GLTGSGVKVAVLDTGI-STHPDLNI-------------------------------RGGASFVPG------ 52 (269)
T ss_dssp HHHHT----TCSCTTCEEEEEESCC-CCCTTCCE-------------------------------EEEEECSTT------
T ss_pred HHHhc----CCCCCCCEEEEECCCC-CCCHhhcc-------------------------------cCCcccCCC------
Confidence 46665 6899999999999999 89999952 233344321
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
...+.|+.||||||||||+|..+. ..+.||||+|+|+.+|+++..+.+..+++++||+||+++++
T Consensus 53 ------~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 117 (269)
T 1gci_A 53 ------EPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp ------CCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCChHHHHHHHhcCcCC---------CCcEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCC
Confidence 123568899999999999997321 13689999999999999988767788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||.... ...+..+++++.++|++||+||||+|.....+|+..+++|+|||++.
T Consensus 118 ~Vin~S~G~~~~--------~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T 1gci_A 118 HVANLSLGSPSP--------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp SEEEECCCBSSC--------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred eEEEeCCCCCCC--------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------
Confidence 999999997532 34788899999999999999999999887788888999999998531
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
.+.+
T Consensus 177 ----------------------------------------------------------------------------~~~~ 180 (269)
T 1gci_A 177 ----------------------------------------------------------------------------NNNR 180 (269)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1267
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++||.+ ||+|||++|++++ .++.|..++|||||||||||++|||+|++|+|++
T Consensus 181 ~~~S~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~ 237 (269)
T 1gci_A 181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237 (269)
T ss_dssp CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred CCCCCCCCCc-------------ceEecCCCeEeec----------CCCCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 8899999875 9999999999998 3568999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
.|||++|++||+++. +++.||+|+||+.+|++
T Consensus 238 ~~v~~~L~~tA~~~g----------------------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 238 VQIRNHLKNTATSLG----------------------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHTSBCCS----------------------CHHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHHhCccCC----------------------CCCCcccCccCHHHHcC
Confidence 999999999999874 12479999999999985
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-51 Score=435.57 Aligned_cols=257 Identities=30% Similarity=0.467 Sum_probs=219.1
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. .+|+||+|||||||||++||+|.++ ++.+++|.++
T Consensus 22 ~aw~~-----~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~------ 61 (279)
T 1thm_A 22 QAWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVDN------ 61 (279)
T ss_dssp HHHTT-----CCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTTT------
T ss_pred HHHhc-----CCCCCCEEEEEccCCCCCCcchhcC-----------------------------ccccccccCC------
Confidence 57776 4799999999999999999999964 5556666542
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
...+.|+.||||||||||+|...++ ..+.||||+|+|+.+|+++..+.+..+++++||+||+++|+
T Consensus 62 ------~~~~~d~~gHGT~vAgiia~~~~n~--------~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~ 127 (279)
T 1thm_A 62 ------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA 127 (279)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCcHHHHHHHHhCccCCC--------CccEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCC
Confidence 1345688999999999999975322 13689999999999999988767788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||... ....+..+++++.++|++||+||||+|.....+|+..+++|+|||++.
T Consensus 128 ~Vin~S~G~~~--------~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 186 (279)
T 1thm_A 128 KVISLSLGGTV--------GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp SEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred CEEEEecCCCC--------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------
Confidence 99999999753 235788899999999999999999999887788888999999998531
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
.+.+
T Consensus 187 ----------------------------------------------------------------------------~~~~ 190 (279)
T 1thm_A 187 ----------------------------------------------------------------------------NDNK 190 (279)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 1267
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++||| ++|.+++
T Consensus 191 ~~fS~~G~~~-------------dv~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~ 245 (279)
T 1thm_A 191 SSFSTYGSWV-------------DVAAPGSSIYSTYP----------TSTYASLSGTSMATPHVAGVAGLL--ASQGRSA 245 (279)
T ss_dssp CTTCCCCTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHH--HTTTCCH
T ss_pred CCcCCCCCce-------------EEEEcCCCeEEEeC----------CCCEEEcccHHHHHHHHHHHHHHH--HCCCcCH
Confidence 8899999865 99999999999983 468999999999999999999999 5899999
Q ss_pred HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
++||++|++||+++...+ ..||+|+||+.+|++
T Consensus 246 ~~v~~~L~~ta~~~~~~~---------------------~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 246 SNIRAAIENTADKISGTG---------------------TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHTCBCCTTBT---------------------TTBSSEECCHHHHHH
T ss_pred HHHHHHHHHhCccCCCCC---------------------ccccCCeeCHHHHhc
Confidence 999999999999875432 378999999999974
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=435.29 Aligned_cols=256 Identities=30% Similarity=0.486 Sum_probs=213.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 15 ~~~~~----g~~G~gv~VaViDtGid~~h~~l~~-------------------------------~~g~~~~~~------ 53 (274)
T 1r0r_E 15 KVQAQ----GFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG------ 53 (274)
T ss_dssp HHHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT------
T ss_pred HHHhc----CCCCCCCEEEEEcCCCCCCCHhHcC-------------------------------CCCccccCC------
Confidence 45655 6899999999999999999999952 223344321
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
...+.|..||||||||||+|..+. ..+.||||+|+|+.+|++...+.+..+++++||+||+++++
T Consensus 54 ------~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~ 118 (274)
T 1r0r_E 54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCCCCCHHHHHHHHHccCCC---------CceEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 122457899999999999996421 14689999999999999988766788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC----CCccCCCCcEEEEeeeecCcceeeEEE
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP----KTLVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
+|||||||.... ...+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.
T Consensus 119 ~Vin~S~G~~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 181 (274)
T 1r0r_E 119 DVINMSLGGASG--------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp SEEEECEEBSSC--------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred CEEEeCCCCCCC--------cHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC---------
Confidence 999999997532 35788899999999999999999999763 345677889999998531
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 617 (817)
.+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|
T Consensus 182 ~~~~~~~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p 238 (274)
T 1r0r_E 182 NSNRASFSSVGAEL-------------EVMAPGAGVYSTYP----------TNTYATLNGTSMASPHVAGAAALILSKHP 238 (274)
T ss_dssp TSCBCTTCCCSTTE-------------EEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred CCCcCccCCCCCCc-------------eEEeCCCCeEeecC----------CCCEEEeccHHHHHHHHHHHHHHHHHHCC
Confidence 12678899999865 99999999999983 46899999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
+|+++|||++|++||+++. ++..||+|+||+.+|++
T Consensus 239 ~lt~~~v~~~L~~tA~~~g----------------------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 239 NLSASQVRNRLSSTATYLG----------------------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp TCCHHHHHHHHHHTCBCCS----------------------CHHHHTTCBCCHHHHTC
T ss_pred CCCHHHHHHHHHHhCcccC----------------------CCCCcccCccCHHHHhC
Confidence 9999999999999999864 12479999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-51 Score=433.66 Aligned_cols=258 Identities=32% Similarity=0.489 Sum_probs=214.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 15 ~~~~~----g~~G~gv~VaViDtGid~~h~~l~~-------------------------------~~g~~~~~~------ 53 (281)
T 1to2_E 15 ALHSQ----GYTGSNVKVAVIDSGIDSSHPDLKV-------------------------------AGGASMVPS------ 53 (281)
T ss_dssp HHHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECCTT------
T ss_pred HHHhc----CCCCCCCEEEEEcCCCCCCCHHHcC-------------------------------cCCccccCC------
Confidence 45655 6899999999999999999999962 122333221
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
+..+..|..||||||||||+|..+. ..+.||||+|+|+.+|++...+.+..+++++||+|++++++
T Consensus 54 -----~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 119 (281)
T 1to2_E 54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119 (281)
T ss_dssp -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred -----CCCCCCCCCCcHHHHHHHHhccCCC---------CcceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCC
Confidence 1112357899999999999997421 13689999999999999987766788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC----CCccCCCCcEEEEeeeecCcceeeEEE
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP----KTLVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
+|||||||.... ...+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.
T Consensus 120 ~Vin~S~G~~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (281)
T 1to2_E 120 DVINMSLGGPSG--------SAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp SEEEECEEBSCC--------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred cEEEECCcCCCC--------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------
Confidence 999999997532 35788899999999999999999999763 345777899999998521
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 617 (817)
.+.++.||++||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|++|
T Consensus 183 ~~~~~~fS~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~vaG~aAll~~~~p 239 (281)
T 1to2_E 183 SNQRASFSSVGPEL-------------DVMAPGVSIQSTLP----------GNKYGAYNGTSMASPHVAGAAALILSKHP 239 (281)
T ss_dssp TSCBCTTCCCSTTC-------------CEEEECSSEEEEET----------TTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred CCCcCCcCCCCCCc-------------eEEecCCCeEeecC----------CCCEEecCcHHHHHHHHHHHHHHHHHhCC
Confidence 12678899999865 99999999999983 46899999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 676 (817)
+|+++|||++|++||+++. +++.||+|+||+.+|++.
T Consensus 240 ~lt~~~v~~~L~~tA~~~g----------------------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 240 NWTNTQVRSSLENTTTKLG----------------------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp TCCHHHHHHHHHTTCBCCS----------------------CHHHHTTCBCCHHHHTSS
T ss_pred CCCHHHHHHHHHhhCcccC----------------------CCCCcccceecHHHHhhh
Confidence 9999999999999999874 124799999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-52 Score=441.58 Aligned_cols=266 Identities=23% Similarity=0.271 Sum_probs=212.1
Q ss_pred CCCC-CceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCC
Q 003469 151 DRAG-EDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFA 229 (817)
Q Consensus 151 ~~tG-~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~ 229 (817)
.++| +||+|||||||||++||+|.++. +..+++.. .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~-----------------------------~~~~~~~~----------~~~~~ 43 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD-----------------------------LTVLPTLA----------PTAAR 43 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE-----------------------------EEECCCSS----------CCCCC
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe-----------------------------eecCcCCC----------CCCCC
Confidence 3688 79999999999999999999761 11111111 00111
Q ss_pred CCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC-CCHHHHHHHHHHHHHcCCcEEEecC
Q 003469 230 SPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-GFVADVVAAIDQAVHDGVDILSLSV 308 (817)
Q Consensus 230 ~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~-~~~~di~~ai~~a~~~g~dVIn~Sl 308 (817)
...|.+||||||||||+|+... .+.||||+|+|+.+|++.+... ....++++||+||++++++||||||
T Consensus 44 ~d~~~~gHGT~VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 44 SDGFMSAHGTHVASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCCcccceeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccC
Confidence 2234679999999999997532 3689999999999999866433 5677899999999999999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
|...... .....+..+++++.++|+++|+||||+|......|+..+++|+|||++.
T Consensus 114 G~~~~~~----~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------------- 169 (282)
T 3zxy_A 114 GELTDFG----EADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD-------------------- 169 (282)
T ss_dssp CEEESSS----CCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT--------------------
T ss_pred ccccccc----cccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC--------------------
Confidence 9754322 2345688899999999999999999999988888889999999998531
Q ss_pred cCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEE
Q 003469 389 LSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFV 468 (817)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i 468 (817)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccCCC
Q 003469 469 LAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARG 548 (817)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~G 548 (817)
.+.++.||+||
T Consensus 170 ---------------------------------------------------------------------~~~~~~~S~~~ 180 (282)
T 3zxy_A 170 ---------------------------------------------------------------------HGHPLDFSNWG 180 (282)
T ss_dssp ---------------------------------------------------------------------TSCBCSSSCCC
T ss_pred ---------------------------------------------------------------------CCccccccCCC
Confidence 12677899998
Q ss_pred CCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhC----CCCCHHHH
Q 003469 549 PNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKH----PYWSPAAI 624 (817)
Q Consensus 549 p~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----p~ls~~~i 624 (817)
+. ..||||+|||.+|+++. .++.|..++|||||||||||++|||+|++ |.++|+||
T Consensus 181 ~~----------~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~v 240 (282)
T 3zxy_A 181 ST----------YEQQGILAPGEDILGAK----------PGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKV 240 (282)
T ss_dssp HH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CC----------ccccceeccCcceeeec----------CCCceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHH
Confidence 86 47899999999999998 45689999999999999999999999974 78999999
Q ss_pred HHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 625 KSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 625 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
|++|++||++++.. .+.....+|+|+||+.+|++
T Consensus 241 k~~L~~tA~~~~~~-----------------~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 241 RQLLLQSALPCDDD-----------------APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHCBCC------------------------CGGGTTCBCCHHHHHH
T ss_pred HHHHHhhCeeCCCC-----------------CCCccCceeeeEeCHHHHHH
Confidence 99999999987532 12334589999999999986
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-53 Score=464.85 Aligned_cols=304 Identities=21% Similarity=0.193 Sum_probs=191.4
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCc---cCCCceeeeeehhHHHHh
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRS---FCNGKIIGAQHFAEAAIA 218 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~n~ki~~~~~~~~~~~~ 218 (817)
.+|.. +..|+||+|||||||||++||+|++...... ...|...++........ ....+...++.+.....
T Consensus 22 ~~w~~----~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 94 (357)
T 4h6x_A 22 DLHNQ----TLGDPQITIVIIDGDPDYTLSCFEGAEVSKV--FPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALE- 94 (357)
T ss_dssp HHHHH----CSCCTTSEEEEEESCCCTTSGGGTTCEEEEC--CCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHH-
T ss_pred HHHHh----cCCCCCCEEEEEcCCCCCCChhHcCCCcccc--cccccccccccCcccccccccccCccccccccccccc-
Confidence 56776 4678999999999999999999998632211 11454433211100000 00000000000000000
Q ss_pred hccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC-----CCHHHHHHHH
Q 003469 219 ARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG-----GFVADVVAAI 293 (817)
Q Consensus 219 ~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~-----~~~~di~~ai 293 (817)
....+..++.|++||||||||||||+.+. .+.||||+|+|+.+|++....+ ....++++||
T Consensus 95 ----~~~~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai 160 (357)
T 4h6x_A 95 ----AVIPDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAI 160 (357)
T ss_dssp ----HHCTTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHH
T ss_pred ----cccCCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHH
Confidence 00112234457789999999999997532 3689999999999999754321 2345689999
Q ss_pred HHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCccee
Q 003469 294 DQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYK 373 (817)
Q Consensus 294 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~ 373 (817)
+||+++|++|||||||...... ...+.+..+++++.++|++||+||||+|.....+|+..+++|+|||++.
T Consensus 161 ~~a~~~g~~Vin~S~G~~~~~~----~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~----- 231 (357)
T 4h6x_A 161 DLALELGANIIHCAFCRPTQTS----EGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV----- 231 (357)
T ss_dssp HHHHHTTCSEEEEC---------------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT-----
T ss_pred HHHHHcCCCEEeeccccCCccc----cchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc-----
Confidence 9999999999999999765432 2456888999999999999999999999888888888999999998531
Q ss_pred eEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHH
Q 003469 374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK 453 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~ 453 (817)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccc
Q 003469 454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPI 533 (817)
Q Consensus 454 ~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (817)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003469 534 LHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 534 ~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
.+.++.|||||+. ..||||+|||++|+|+.+. ++.|..++|||||||||||++|||+
T Consensus 232 ----~~~~~~fSn~G~~----------~~~~di~APG~~i~s~~~~---------~~~~~~~sGTS~AaP~vaG~~All~ 288 (357)
T 4h6x_A 232 ----DGTPCHFSNWGGN----------NTKEGILAPGEEILGAQPC---------TEEPVRLTGTSMAAPVMTGISALLM 288 (357)
T ss_dssp ----TSSBCTTCC---C----------TTTTEEEEECSSEEECCTT---------CSCCEEECSHHHHHHHHHHHHHHHH
T ss_pred ----CCcccccccCCCC----------CCccceeecCCCeEeccCC---------CCcccccCcHHHHHHHHHHHHHHHH
Confidence 1267899999986 4699999999999999853 4567889999999999999999999
Q ss_pred Hh----CCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 614 QK----HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 614 q~----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
++ +|.|+++|||++|++||++++..+ ...+++||+|+||+.+|++
T Consensus 289 s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~-----------------~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 289 SLQVQQGKPVDAEAVRTALLKTAIPCDPEV-----------------VEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHC-------------------------------CTTCBCCHHHHHH
T ss_pred HhhHhhCCCCCHHHHHHHHHhhCccCCCCC-----------------CCCcccceeEEecHHHHHH
Confidence 64 668999999999999999875322 2334689999999999986
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-51 Score=443.10 Aligned_cols=264 Identities=29% Similarity=0.378 Sum_probs=214.1
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++ +..+++|..+...
T Consensus 32 ~aw~~----~~~G~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~~~~--- 75 (327)
T 2x8j_A 32 AVWRA----SAKGAGQIIGVIDTGCQVDHPDLAER-----------------------------IIGGVNLTTDYGG--- 75 (327)
T ss_dssp HHHHH----HGGGTTCEEEEEESCCCTTCTTTGGG-----------------------------EEEEEECSSGGGG---
T ss_pred HHHhc----CCCCCCCEEEEEcCCCCCCChhHhhc-----------------------------ccCCccccCCCCC---
Confidence 56765 68999999999999999999999864 4555565443100
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH---
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH--- 298 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~--- 298 (817)
+.....|+.||||||||||+|+.+ + ..+.||||+|+|+.+|++...+.+..+++++||+||++
T Consensus 76 -----~~~~~~d~~gHGT~VAgiia~~~~------~---~g~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~ 141 (327)
T 2x8j_A 76 -----DETNFSDNNGHGTHVAGTVAAAET------G---SGVVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRG 141 (327)
T ss_dssp -----CTTCCCCSSSHHHHHHHHHHCCCC------S---SBCCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCC
T ss_pred -----CCCCCCCCCCchHHHHHHHhccCC------C---CCcEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcc
Confidence 112356889999999999999742 1 14689999999999999988766788899999999999
Q ss_pred ---cCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-----CCccCCCCcEEEEeeeecCc
Q 003469 299 ---DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-----KTLVSYSPWITTVAAAIDDR 370 (817)
Q Consensus 299 ---~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-----~~~~~~~~~vitVgA~~~~~ 370 (817)
.+++|||||||... ....+..+++++.++|++||+||||+|... ..+|+..+++|+|||++.
T Consensus 142 ~~~~~~~Vin~S~G~~~--------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~-- 211 (327)
T 2x8j_A 142 PKGEQMRIITMSLGGPT--------DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF-- 211 (327)
T ss_dssp TTSCCCSEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT--
T ss_pred cccCCceEEEECCCcCC--------CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC--
Confidence 89999999999743 235688899999999999999999999752 356778899999998531
Q ss_pred ceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc
Q 003469 371 RYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA 450 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~ 450 (817)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCC
Q 003469 451 SIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGL 530 (817)
Q Consensus 451 ~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (817)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHH
Q 003469 531 MPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAA 610 (817)
Q Consensus 531 ~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aA 610 (817)
.+.++.||++||.+ ||+|||++|++++ .++.|..++|||||||||||++|
T Consensus 212 -------~~~~~~fS~~G~~~-------------di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aA 261 (327)
T 2x8j_A 212 -------DLRLSDFTNTNEEI-------------DIVAPGVGIKSTY----------LDSGYAELSGTAMAAPHVAGALA 261 (327)
T ss_dssp -------TCCBSCC---CCCC-------------SEEEECSSEEEEC----------STTCEEEEESGGGTHHHHHHHHH
T ss_pred -------CCCCCCccCCCCCc-------------eEecCcCceEeec----------CCCCEEeecCHHHHHHHHHHHHH
Confidence 12678899999865 9999999999997 34689999999999999999999
Q ss_pred HHHHh-----CCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469 611 LVKQK-----HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676 (817)
Q Consensus 611 Ll~q~-----~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 676 (817)
||+|+ +|.+++.+||++|++||+++.. +++.||+|+||+.+|++.
T Consensus 262 ll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~---------------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 262 LIINLAEDAFKRSLSETEIYAQLVRRATPIGF---------------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS---------------------CHHHHTTCEECTTHHHHH
T ss_pred HHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC---------------------CCCceeeeEECHHHHHHh
Confidence 99999 9999999999999999998641 235899999999999873
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-50 Score=431.47 Aligned_cols=286 Identities=28% Similarity=0.397 Sum_probs=222.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++ +...++|....
T Consensus 17 ~~w~~----~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------------~~~~~~~~~~~----- 58 (310)
T 2ixt_A 17 DTLTS----TTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT----- 58 (310)
T ss_dssp TTCCC----CCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS-----
T ss_pred hhhhc----cCCCCCcEEEEEecCCCCCCHHHhhc-----------------------------ccccccccCCC-----
Confidence 67876 68999999999999999999999975 34445553320
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
........|+.||||||||||+|+... +...+.||||+|+|+.+|++.+.+.+..+++++||+||+++++
T Consensus 59 ---~~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 128 (310)
T 2ixt_A 59 ---TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQAT 128 (310)
T ss_dssp ---SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhh
Confidence 001123467899999999999997421 1124689999999999999988766788999999999999988
Q ss_pred -----cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCC--CCCccCCCCcEEEEeeeecCcceee
Q 003469 302 -----DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF--PKTLVSYSPWITTVAAAIDDRRYKN 374 (817)
Q Consensus 302 -----dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~--~~~~~~~~~~vitVgA~~~~~~~~~ 374 (817)
+|||||||... ....+..+++++.++|++||+||||+|.. ...+|+..+++|+|||++....
T Consensus 129 ~~~~~~Vin~S~G~~~--------~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~--- 197 (310)
T 2ixt_A 129 ATGTKTIISMSLGSSA--------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQ--- 197 (310)
T ss_dssp HHTCCEEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEE---
T ss_pred ccCCCeEEEEcCCCCC--------CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEecccccc---
Confidence 99999999753 23578889999999999999999999976 3456778899999999641100
Q ss_pred EEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHH
Q 003469 375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~ 454 (817)
T Consensus 198 -------------------------------------------------------------------------------- 197 (310)
T 2ixt_A 198 -------------------------------------------------------------------------------- 197 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccc
Q 003469 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL 534 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (817)
.+
T Consensus 198 -----------------------------------------------------------~g------------------- 199 (310)
T 2ixt_A 198 -----------------------------------------------------------NG------------------- 199 (310)
T ss_dssp -----------------------------------------------------------TT-------------------
T ss_pred -----------------------------------------------------------CC-------------------
Confidence 00
Q ss_pred cCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH
Q 003469 535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ 614 (817)
Q Consensus 535 ~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 614 (817)
...++.||++||......+ ...+.||||+|||++|++++ .++.|..++|||||||||||++|||+|
T Consensus 200 ---~~~~~~~S~~G~~~~~g~~-~~~~~~~di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~ 265 (310)
T 2ixt_A 200 ---TYRVADYSSRGYISTAGDY-VIQEGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIWA 265 (310)
T ss_dssp ---EEEECTTSCCCCTTTTTSS-SCCTTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ---CeeeccccCCCCccCCccc-cccCCCeeEECCCCCEeeec----------CCCCEEeeccHHHHHHHHHHHHHHHHH
Confidence 0057889999995321000 01245999999999999997 346899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCc
Q 003469 615 KHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNP 670 (817)
Q Consensus 615 ~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 670 (817)
++|+|++.+||++|++||++++..+.. ...+.....+|+|++|+
T Consensus 266 ~~p~lt~~~v~~~L~~tA~~~~~~~~~------------~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 266 ENPSLSNTQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFARV 309 (310)
T ss_dssp HSTTCCHHHHHHHHHHHHHTSCCCBST------------TCCSSSBTTTBTCBCCC
T ss_pred hCCCCCHHHHHHHHHhhCcccCCCCCc------------ccccCCccccccceeec
Confidence 999999999999999999987643210 12345567899999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-51 Score=440.97 Aligned_cols=275 Identities=25% Similarity=0.317 Sum_probs=218.4
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHH
Q 003469 138 GLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAI 217 (817)
Q Consensus 138 g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~ 217 (817)
|++ ++|+. ...++||+|||||||||++||+|.++. +....+|..+
T Consensus 9 G~~-~aW~~----~~G~~gV~VaViDtGid~~Hpdl~g~~----------------------------~~~~~~~~~~-- 53 (306)
T 4h6w_A 9 GLK-KLWSE----TRGDPKICVAVLDGIVDQNHPCFIGAD----------------------------LTRLPSLVSG-- 53 (306)
T ss_dssp THH-HHHHH----CSCCTTCEEEEESSCCCTTSGGGTTCE----------------------------EEECC-------
T ss_pred CHH-HHHhh----hCCCCCCEEEEEcCCCCCCChhHcCCc----------------------------ccCCCcccCC--
Confidence 443 67877 234589999999999999999999761 2222223221
Q ss_pred hhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCC-CCCHHHHHHHHHHH
Q 003469 218 AARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLF-GGFVADVVAAIDQA 296 (817)
Q Consensus 218 ~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~-~~~~~di~~ai~~a 296 (817)
+.....|.+||||||||||+|+.+. .+.||||+|+|+.+|++.+.. .....++++||+||
T Consensus 54 ---------~~~~~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a 114 (306)
T 4h6w_A 54 ---------EANANGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQA 114 (306)
T ss_dssp --------------CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHH
T ss_pred ---------CCCCCCCCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHh
Confidence 1122346789999999999997532 368999999999999986543 35677899999999
Q ss_pred HHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEE
Q 003469 297 VHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHL 376 (817)
Q Consensus 297 ~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~ 376 (817)
++++++|||+|||...... .....+..+++++.++|++||+||||+|.....+|+..+++|+|||++..
T Consensus 115 ~~~g~~vi~~s~g~~~~~~----~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------- 183 (306)
T 4h6w_A 115 VNNGANIINVSAGQLTDAG----EADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------- 183 (306)
T ss_dssp HHTTCSEEEECCCEEESSS----CCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT-------
T ss_pred hcccceeeeccccccccCC----CccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC-------
Confidence 9999999999999654322 23456888999999999999999999998887888889999999985311
Q ss_pred EeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHH
Q 003469 377 NLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVS 456 (817)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~ 456 (817)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccC
Q 003469 457 ETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHK 536 (817)
Q Consensus 457 ~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (817)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHh-
Q 003469 537 SAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQK- 615 (817)
Q Consensus 537 ~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~- 615 (817)
+.++.||++|+. ..||||+|||++|+|+. .++.|..++|||||||||||++|||+++
T Consensus 184 --~~~~~~s~~g~~----------~~~~di~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~~All~s~~ 241 (306)
T 4h6w_A 184 --GKPVDFSNWGDA----------YQKQGILAPGKDILGAK----------PNGGTIRLSGTSFATPIVSGVAALLLSLQ 241 (306)
T ss_dssp --SCBCSSSCBCHH----------HHHHEEEEECSSEEEEC----------TTSCEEEECSHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccccccccCC----------cCcceeecCCcCccccc----------CCCceeccCCCcchhHHHHHHHHHHHHHH
Confidence 156788999975 47899999999999998 4568999999999999999999999864
Q ss_pred ---CCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469 616 ---HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676 (817)
Q Consensus 616 ---~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 676 (817)
+|.|+|+|||++|++||+++...+. .+...||+|+||+.+|++.
T Consensus 242 ~~~~p~~t~~~v~~~L~~tA~~~~~~~~-----------------~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 242 IKRGEKPDPQKVKNALLASATPCNPKDT-----------------DDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp HHTTCCCCHHHHHHHHHHTCBCCCTTTC-----------------SCGGGGTTCBCCHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHhhCccCCCCCC-----------------CCCCCcceeecCHHHHHHH
Confidence 6999999999999999999865432 2234799999999999873
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=438.73 Aligned_cols=265 Identities=25% Similarity=0.410 Sum_probs=218.6
Q ss_pred CCCCCCCCCCCCCCC--ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHh
Q 003469 141 TGVWPTGGGFDRAGE--DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIA 218 (817)
Q Consensus 141 ~~~w~~~~~~~~tG~--GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~ 218 (817)
+.+|.. + +|+ ||+|||||||||++||+|.++ +..+++|..+..
T Consensus 18 ~~aw~~----~-~G~~~gv~VaViDtGid~~Hp~l~~~-----------------------------~~~~~~~~~~~~- 62 (320)
T 2z30_A 18 PSVWSI----T-DGSVSVIQVAVLDTGVDYDHPDLAAN-----------------------------IAWCVSTLRGKV- 62 (320)
T ss_dssp GGGTTT----C-CSCCTTCEEEEEESCBCTTCTTTGGG-----------------------------EEEEEECGGGCC-
T ss_pred HHHHHh----c-CCCcCCeEEEEECCCCCCCChhHhcc-----------------------------cccCccccCCcc-
Confidence 367876 3 899 999999999999999999964 444555543210
Q ss_pred hccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH
Q 003469 219 ARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH 298 (817)
Q Consensus 219 ~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~ 298 (817)
..+..+..|..||||||||||+|..+ + ..+.||||+|+|+.+|++...+.+..+++++||+||++
T Consensus 63 ------~~~~~~~~d~~gHGT~vAgiia~~~n------~---~g~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~ 127 (320)
T 2z30_A 63 ------STKLRDCADQNGHGTHVIGTIAALNN------D---IGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAIL 127 (320)
T ss_dssp ------BCCHHHHBCSSSHHHHHHHHHHCCSS------S---BSCCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHH
T ss_pred ------CCCCCCCCCCCCCHHHHHHHHHcccC------C---CceEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHh
Confidence 00001235789999999999999632 1 13689999999999999988766788899999999998
Q ss_pred c--------------------CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCC
Q 003469 299 D--------------------GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSP 358 (817)
Q Consensus 299 ~--------------------g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~ 358 (817)
+ +++|||||||.... ...+..+++++.++|++||+||||+|.....+|+..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~--------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~ 199 (320)
T 2z30_A 128 GPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD--------DSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYP 199 (320)
T ss_dssp TTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC--------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTST
T ss_pred CcccccccccccccccccccCCceEEEecCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCC
Confidence 7 99999999997532 3467888999999999999999999988778888999
Q ss_pred cEEEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEE
Q 003469 359 WITTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILL 438 (817)
Q Consensus 359 ~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~ 438 (817)
++|+|||++.
T Consensus 200 ~vi~Vga~~~---------------------------------------------------------------------- 209 (320)
T 2z30_A 200 EVIAVGAIDS---------------------------------------------------------------------- 209 (320)
T ss_dssp TEEEEEEECT----------------------------------------------------------------------
T ss_pred CeEEEEeeCC----------------------------------------------------------------------
Confidence 9999998531
Q ss_pred EecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeE
Q 003469 439 CGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVK 518 (817)
Q Consensus 439 ~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~ 518 (817)
T Consensus 210 -------------------------------------------------------------------------------- 209 (320)
T 2z30_A 210 -------------------------------------------------------------------------------- 209 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCc
Q 003469 519 SFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGT 598 (817)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGT 598 (817)
.+.++.||++|| +|+|||++|+++++ ++.|..++||
T Consensus 210 -------------------~~~~~~~S~~g~---------------~v~APG~~i~s~~~----------~~~~~~~sGT 245 (320)
T 2z30_A 210 -------------------NDNIASFSNRQP---------------EVSAPGVDILSTYP----------DDSYETLMGT 245 (320)
T ss_dssp -------------------TSCBCTTSCSSC---------------SEEEECSSEEEEET----------TTEEEEECSH
T ss_pred -------------------CCCcCcccCCCC---------------CEEeCCCCeEEecc----------CCCeEeccCH
Confidence 126788999987 67999999999983 4689999999
Q ss_pred cchhHHHHHHHHHHHHhC-------------CCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccc
Q 003469 599 SMAAPHIAGIAALVKQKH-------------PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGS 665 (817)
Q Consensus 599 SmAaP~VAG~aALl~q~~-------------p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~ 665 (817)
|||||||||++|||+|++ |+|++.+||++|++||+++...+ .+..||+
T Consensus 246 S~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~~~g-------------------~~~~~G~ 306 (320)
T 2z30_A 246 AMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------------------WDADYGY 306 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCSSSS-------------------SBTTTBT
T ss_pred HHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCCCCC-------------------CCCCcCC
Confidence 999999999999999998 99999999999999999875433 2357999
Q ss_pred cccCcccccCC
Q 003469 666 GHVNPRAALDP 676 (817)
Q Consensus 666 G~vn~~~Al~~ 676 (817)
|+||+.+|++.
T Consensus 307 G~vd~~~A~~~ 317 (320)
T 2z30_A 307 GVVRAALAVQA 317 (320)
T ss_dssp CBCCHHHHHHH
T ss_pred ceeCHHHHHHH
Confidence 99999999864
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=441.78 Aligned_cols=291 Identities=25% Similarity=0.327 Sum_probs=224.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecC------CCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHH
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYP------HHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEA 215 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~------~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~ 215 (817)
.+|.. .+++|+||+|||||||||+ .||+|.++ +...++|.+.
T Consensus 12 ~~~~~---~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~~-----------------------------i~~~~~~~~~ 59 (434)
T 1wmd_A 12 VAQSS---YGLYGQGQIVAVADTGLDTGRNDSSMHEAFRGK-----------------------------ITALYALGRT 59 (434)
T ss_dssp HHHHH---HCCSCTTCEEEEEESCCTTSCSSTTSCTTTTTC-----------------------------EEEEEETTTT
T ss_pred hhhhc---cCCCCcccEEEEEecCcCCCCCCcccCcccCCC-----------------------------EeeeccccCC
Confidence 46652 1689999999999999999 79999864 4445555321
Q ss_pred HHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHH
Q 003469 216 AIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAI 293 (817)
Q Consensus 216 ~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai 293 (817)
..+.|+.||||||||||+|++. .+.||||+|+|+++|++...+.. ..+++.++|
T Consensus 60 -------------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai 115 (434)
T 1wmd_A 60 -------------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLF 115 (434)
T ss_dssp -------------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHH
T ss_pred -------------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeecCCCccccccHHHHHHH
Confidence 2456889999999999999642 25799999999999999765432 456799999
Q ss_pred HHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHH-HHcCceEEEecCCCCCCC--CCccCCCCcEEEEeeeecCc
Q 003469 294 DQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAA-VKAGVFVAQAAGNGGPFP--KTLVSYSPWITTVAAAIDDR 370 (817)
Q Consensus 294 ~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~--~~~~~~~~~vitVgA~~~~~ 370 (817)
++|+++|++|||||||..... ..+....+++++ .++|++||+||||+|... ...|+.++++|+|||++..+
T Consensus 116 ~~a~~~g~~Vin~S~G~~~~~------~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~ 189 (434)
T 1wmd_A 116 SQAYSAGARIHTNSWGAAVNG------AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLR 189 (434)
T ss_dssp HHHHHTTCSEEEECCCBCCTT------CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSC
T ss_pred HHHHhcCCeEEEecCCCCcCC------cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccC
Confidence 999999999999999986421 123556677666 589999999999999864 34577899999999975322
Q ss_pred ceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcc
Q 003469 371 RYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA 450 (817)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~ 450 (817)
... +
T Consensus 190 ~~~--------------------------------------------------------------------------~-- 193 (434)
T 1wmd_A 190 PSF--------------------------------------------------------------------------G-- 193 (434)
T ss_dssp GGG--------------------------------------------------------------------------C--
T ss_pred ccc--------------------------------------------------------------------------C--
Confidence 000 0
Q ss_pred hHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCC
Q 003469 451 SIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGL 530 (817)
Q Consensus 451 ~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (817)
T Consensus 194 -------------------------------------------------------------------------------- 193 (434)
T 1wmd_A 194 -------------------------------------------------------------------------------- 193 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCC--CccCCceEeecCccchhHHHHHH
Q 003469 531 MPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEA--NFVGEGFALISGTSMAAPHIAGI 608 (817)
Q Consensus 531 ~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmAaP~VAG~ 608 (817)
.+....+.+++||||||+.++ ++||||+|||++|+++.+....... ...++.|..++|||||||||||+
T Consensus 194 --~~~~~~~~~a~fS~~G~~~~g-------~~kpdi~ApG~~i~s~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~ 264 (434)
T 1wmd_A 194 --SYADNINHVAQFSSRGPTKDG-------RIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGN 264 (434)
T ss_dssp --GGGSCTTSBCTTSCCCCCTTS-------CCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHH
T ss_pred --cccCCCCccccccCCCCCCCC-------CCCceEEcCCCCeEecCCCCCCCcccccCCCCceEeecchhHHHHHHHHH
Confidence 000112478999999999986 9999999999999999854221000 00256899999999999999999
Q ss_pred HHHHHHhCCCC-----CHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCe
Q 003469 609 AALVKQKHPYW-----SPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGL 678 (817)
Q Consensus 609 aALl~q~~p~l-----s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 678 (817)
+|||+|++|++ ++++||++|++||+++.. ..+.+.||||++|+.+|+...+
T Consensus 265 aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~-------------------~~~~~~~G~G~vd~~~a~~~~~ 320 (434)
T 1wmd_A 265 VAQLREHFVKNRGITPKPSLLKAALIAGAADIGL-------------------GYPNGNQGWGRVTLDKSLNVAY 320 (434)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS-------------------CSSCTTTTTCBCCHHHHHTCEE
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC-------------------CCCCccCCcCeEeHHHhcccce
Confidence 99999998875 899999999999987532 2345689999999999997653
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=433.34 Aligned_cols=269 Identities=18% Similarity=0.131 Sum_probs=215.2
Q ss_pred CCCCCCCCCCCCCC--ceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhh
Q 003469 142 GVWPTGGGFDRAGE--DIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAA 219 (817)
Q Consensus 142 ~~w~~~~~~~~tG~--GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~ 219 (817)
.+|.. ++|+ ||+||||||||| +||+|.++ +..+++|..+.
T Consensus 34 ~aw~~-----~~G~~~gv~VaViDsGid-~Hp~l~~~-----------------------------~~~~~~~~~~~--- 75 (347)
T 2iy9_A 34 ETTMS-----LTDKNTPVVVSVVDSGVA-FIGGLSDS-----------------------------EFAKFSFTQDG--- 75 (347)
T ss_dssp HHHHH-----TSCTTSCCEEEEEESCCC-CCGGGTTC-----------------------------EEEEEECBTTC---
T ss_pred HHHHH-----hcCCCCCCEEEEEcCCCc-CChhhhcC-----------------------------cccCCcccCCC---
Confidence 56765 6899 999999999999 99999975 44455554320
Q ss_pred ccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc
Q 003469 220 RAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD 299 (817)
Q Consensus 220 ~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~ 299 (817)
.+.+...+.|+.||||||||||+|+. ++.||||+|+|+.+|++.+.... ++++||+||+++
T Consensus 76 ----~~~~~~~~~d~~gHGT~vAgiia~~~------------g~~GvAp~a~l~~~~v~~~~~~~---~~~~ai~~a~~~ 136 (347)
T 2iy9_A 76 ----SPFPVKKSEALYIHGTAMASLIASRY------------GIYGVYPHALISSRRVIPDGVQD---SWIRAIESIMSN 136 (347)
T ss_dssp ----CSSCCSSSHHHHHHHHHHHHHHHCSS------------SSCCSSTTCEEEEEECCSSBCTT---HHHHHHHHHHTC
T ss_pred ----CCCCCCCCCCCCCcHHHHHHHHhccc------------CCcccCCCCEEEEEEEecCCCHH---HHHHHHHHHHhh
Confidence 00111245578899999999999971 35899999999999999764332 899999999999
Q ss_pred ------CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCC-------CCCccCCCC--------
Q 003469 300 ------GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPF-------PKTLVSYSP-------- 358 (817)
Q Consensus 300 ------g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~-------~~~~~~~~~-------- 358 (817)
|++|||||||..... .....+..+++++.++|++||+||||+|.. ...+|+..+
T Consensus 137 ~~~~~~~~~Vin~S~G~~~~~-----~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~ 211 (347)
T 2iy9_A 137 VFLAPGEEKIINISGGQKGVA-----SASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211 (347)
T ss_dssp TTSCTTEEEEEEESSCBCCC------CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHH
T ss_pred hhcccCCceEEEeccccCCCC-----CcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccc
Confidence 999999999975321 135678899999999999999999999985 345677788
Q ss_pred --cEEEEeeeec--CcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccc
Q 003469 359 --WITTVAAAID--DRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEG 434 (817)
Q Consensus 359 --~vitVgA~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~g 434 (817)
++|+|||++. +...
T Consensus 212 ~~~vi~Vga~~~~~~g~~-------------------------------------------------------------- 229 (347)
T 2iy9_A 212 QDPVIRVAALAQYRKGET-------------------------------------------------------------- 229 (347)
T ss_dssp TCCEEEEEEECCCCTTSC--------------------------------------------------------------
T ss_pred cCCEEEEEEcccCCCCce--------------------------------------------------------------
Confidence 9999998642 1100
Q ss_pred cEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCc
Q 003469 435 NILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWT 514 (817)
Q Consensus 435 ki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~ 514 (817)
T Consensus 230 -------------------------------------------------------------------------------- 229 (347)
T 2iy9_A 230 -------------------------------------------------------------------------------- 229 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEeeeeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEe
Q 003469 515 GRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFAL 594 (817)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~ 594 (817)
....+.++.||++||+ ||||+|||++|+++++ ++.|..
T Consensus 230 --------------------~~~~~~~~~fS~~G~~------------~~di~APG~~i~s~~~----------~~~~~~ 267 (347)
T 2iy9_A 230 --------------------PVLHGGGITGSRFGNN------------WVDIAAPGQNITFLRP----------DAKTGT 267 (347)
T ss_dssp --------------------CCBCCCSSSCBCBCTT------------TCSEEEECSSEEEECT----------TSCEEE
T ss_pred --------------------ecccCCCCCCCCCCCC------------CCEEEeCCCCeEeecC----------CCCeEe
Confidence 0001256799999983 4599999999999983 568999
Q ss_pred ecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccccc
Q 003469 595 ISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674 (817)
Q Consensus 595 ~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al 674 (817)
++|||||||||||++|||+|++|+|++.+||++|++||+++...+ ...+|+|+||+.+|+
T Consensus 268 ~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~--------------------~~~~G~G~ld~~~A~ 327 (347)
T 2iy9_A 268 GSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV--------------------DKVTEGRVLNAEKAI 327 (347)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT--------------------TTSGGGEECCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC--------------------CccccCCEecHHHHH
Confidence 999999999999999999999999999999999999999875322 248999999999999
Q ss_pred CC
Q 003469 675 DP 676 (817)
Q Consensus 675 ~~ 676 (817)
+.
T Consensus 328 ~~ 329 (347)
T 2iy9_A 328 SM 329 (347)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-49 Score=429.94 Aligned_cols=300 Identities=25% Similarity=0.340 Sum_probs=218.6
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccc-cCCCCCCccCCCceeeeeehhHHHHhhc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCE-VDPDTKRSFCNGKIIGAQHFAEAAIAAR 220 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~n~ki~~~~~~~~~~~~~~ 220 (817)
.+|.. +++|+||+||||||||| +||+|.++...++..+. +.... .+..... ...-...++.. ..
T Consensus 23 ~aw~~----g~~G~gV~VaViDtGi~-~hp~l~~~~~~~~~~~~--~~~~~~d~~~~~~----~~~~~~~~~~~-~~--- 87 (340)
T 3lpc_A 23 KVWDM----GFTGQNVVVAVVDTGIL-HHRDLNANVLPGYDFIS--NSQISLDGDGRDA----DPFDEGDWFDN-WA--- 87 (340)
T ss_dssp HHHHH----TCSCTTCEEEEEESCBC-CCTTTGGGBCCCEECCC--CHHHHCSSSSSBS----CCBCCCCCBCT-TT---
T ss_pred HHHHh----cCCCCCeEEEEEcCCCC-CChhhhcccccCccccC--CccccccCCCccC----Ccccccccccc-cc---
Confidence 56765 68999999999999998 99999876322211110 00000 0000000 00000000000 00
Q ss_pred cCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH--
Q 003469 221 AFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-- 298 (817)
Q Consensus 221 ~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-- 298 (817)
....+.+.....|..||||||||||+|..... ..+.||||+|+|+.+|++...+ ++.+++++||+||++
T Consensus 88 ~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~~--------~g~~GvAp~a~l~~~~v~~~~~-~~~~~~~~ai~~a~~~~ 158 (340)
T 3lpc_A 88 CGGRPDPRKERSDSSWHGSHVAGTIAAVTNNR--------IGVAGVAYGAKVVPVRALGRCG-GYDSDISDGLYWAAGGR 158 (340)
T ss_dssp TSCTTCGGGSCBCCCCHHHHHHHHHHCCCSSS--------SSCCCTTTTSEEEEEECCBTTB-CCHHHHHHHHHHHHTCC
T ss_pred ccCCCCcccCCCCCCCCHHHHHHHHHccCCCC--------CcceeecCCCEEEEEEEecCCC-CcHHHHHHHHHHHhccc
Confidence 00011122345688999999999999975422 1368999999999999998764 788899999999998
Q ss_pred --------cCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecC
Q 003469 299 --------DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDD 369 (817)
Q Consensus 299 --------~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~ 369 (817)
.+++|||||||.... ....+..+++++.++|++||+||||+|.... ..++..+++|+|||++.
T Consensus 159 ~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~- 230 (340)
T 3lpc_A 159 IAGIPENRNPAKVINMSLGSDGQ-------CSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS- 230 (340)
T ss_dssp CTTSCCCSSCCSEEEECCCEESC-------CCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT-
T ss_pred ccccccccCCCeEEEeCcCCCCC-------cchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC-
Confidence 899999999997432 2446788899999999999999999997654 45778899999998531
Q ss_pred cceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCc
Q 003469 370 RRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGT 449 (817)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~ 449 (817)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCC
Q 003469 450 ASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDG 529 (817)
Q Consensus 450 ~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (817)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHH
Q 003469 530 LMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIA 609 (817)
Q Consensus 530 ~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 609 (817)
.+.++.||++||.+ ||+|||++|+++++..... ...+.|..++|||||||||||++
T Consensus 231 --------~~~~~~~S~~g~~~-------------di~ApG~~i~s~~~~~~~~---~~~~~~~~~sGTS~AaP~vaG~a 286 (340)
T 3lpc_A 231 --------RGIRASFSNYGVDV-------------DLAAPGQDILSTVDSGTRR---PVSDAYSFMAGTSMATPHVSGVA 286 (340)
T ss_dssp --------TSSBCTTCCBSTTC-------------CEEEECSSEEEEEESCSSS---CCSEEEEEECSHHHHHHHHHHHH
T ss_pred --------CCCcCCCCCCCCCc-------------eEEecCCCeecccCCCCcC---CCCCcceecccHhHHHHHHHHHH
Confidence 12678899999754 9999999999998653211 12346999999999999999999
Q ss_pred HHHHHh-C---CCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCC
Q 003469 610 ALVKQK-H---PYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPG 677 (817)
Q Consensus 610 ALl~q~-~---p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 677 (817)
|||+|+ + |.|++++||++|++||+++.. .+...||+|+||+.+||+..
T Consensus 287 All~~~~~~~~p~lt~~~v~~~L~~tA~~~~~--------------------~~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 287 ALVISAANSVNKNLTPAELKDVLVSTTSPFNG--------------------RLDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS--------------------CCSSCCCSSBCCHHHHHHHH
T ss_pred HHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC--------------------CCCCCcccceecHHHHHHHH
Confidence 999998 5 999999999999999998642 23358999999999998743
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-48 Score=409.00 Aligned_cols=235 Identities=28% Similarity=0.432 Sum_probs=202.0
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++ +..+++|.+.
T Consensus 20 ~aw~~----~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~~------ 60 (284)
T 1sh7_A 20 RNYNA----NFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------------SVSGYDFVDN------ 60 (284)
T ss_dssp SBCCC----SCCCTTCEEEEEESCCCTTCTTTTTC-----------------------------EEEEEETTTT------
T ss_pred hhhhc----CCCCCCCEEEEEcCCCCCCChhHcCC-----------------------------ccccccccCC------
Confidence 46766 68999999999999999999999964 4455666542
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc--
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-- 299 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-- 299 (817)
..++.|+.||||||||||+|+. .||||+|+|+.+|++++.+.+..+++++||+|++++
T Consensus 61 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~ 120 (284)
T 1sh7_A 61 ------DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNAS 120 (284)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCC
Confidence 1245688999999999999962 599999999999999887678889999999999985
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+++|||||||.. ....+..+++++.++|++||+||||+|.... ..|+..+++|+|||++.
T Consensus 121 ~~~Vin~S~G~~---------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (284)
T 1sh7_A 121 GPSVANMSLGGG---------QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS---------- 181 (284)
T ss_dssp SSEEEEECCCBS---------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT----------
T ss_pred CCcEEEeCCCCC---------CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC----------
Confidence 799999999974 2357889999999999999999999997643 45778899999998531
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 182 -------------------------------------------------------------------------------~ 182 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------S 182 (284)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.++.||++||.+ ||+|||++|++++ .++.|..++|||||||||||++|||+|++|+
T Consensus 183 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 239 (284)
T 1sh7_A 183 DSRSSFSNWGSCV-------------DLFAPGSQIKSAW----------YDGGYKTISGTSMATPHVAGVAALYLQENNG 239 (284)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCcccCCCCcc-------------EEEeccCCeEEec----------CCCCEEEccChHHHHHHHHHHHHHHHHHCCC
Confidence 2678899999976 9999999999997 3458999999999999999999999999999
Q ss_pred CCHHHHHHHHhccccccc
Q 003469 619 WSPAAIKSALMTTTTKLD 636 (817)
Q Consensus 619 ls~~~ik~~L~~TA~~~~ 636 (817)
|+++|||++|++||++..
T Consensus 240 lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 240 LTPLQLTGLLNSRASENK 257 (284)
T ss_dssp CCHHHHHHHHHHHSEESC
T ss_pred CCHHHHHHHHHhhCccCC
Confidence 999999999999998864
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=461.19 Aligned_cols=357 Identities=22% Similarity=0.255 Sum_probs=245.6
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCC--CHHHHHHHHHHHHH-----cCCcEE
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGG--FVADVVAAIDQAVH-----DGVDIL 304 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~--~~~di~~ai~~a~~-----~g~dVI 304 (817)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++...+. ..++++.+|.+|++ +|++||
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVI 337 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVI 337 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEE
Confidence 478999999999999985 21 246899999999999999765332 45667777777777 799999
Q ss_pred EecCCCCCCCCCCccCCCChHHHHHHHHH-HcCceEEEecCCCCCCCCC--ccC--CCCcEEEEeeeecCcceeeEEEeC
Q 003469 305 SLSVGPNSPPATTKTTFLNPFDVTLLAAV-KAGVFVAQAAGNGGPFPKT--LVS--YSPWITTVAAAIDDRRYKNHLNLG 379 (817)
Q Consensus 305 n~SlG~~~~~~~~~~~~~~~~~~a~~~a~-~~Gv~vV~AAGN~G~~~~~--~~~--~~~~vitVgA~~~~~~~~~~~~~~ 379 (817)
|||||...... ..+.+..++.++. ++|++||+||||+|....+ .++ .++++|+|||++........+..
T Consensus 338 NmS~G~~~~~~-----~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~- 411 (1354)
T 3lxu_X 338 NMSYGEHANWS-----NSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM- 411 (1354)
T ss_dssp EECCCCCCSCS-----SCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-----
T ss_pred EcCCccCCCCC-----ccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc-
Confidence 99999865322 2457788888886 8999999999999986443 455 38999999997533210000000
Q ss_pred CCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHH
Q 003469 380 NGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETA 459 (817)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~ 459 (817)
T Consensus 412 -------------------------------------------------------------------------------- 411 (1354)
T 3lxu_X 412 -------------------------------------------------------------------------------- 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCC
Q 003469 460 KSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAP 539 (817)
Q Consensus 460 ~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (817)
.....+
T Consensus 412 --------------------------------------------------------------------------~~~~~g 417 (1354)
T 3lxu_X 412 --------------------------------------------------------------------------REKLPG 417 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------ccCCCC
Confidence 000123
Q ss_pred ccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH----h
Q 003469 540 QVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ----K 615 (817)
Q Consensus 540 ~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~ 615 (817)
.++.||||||+.++ ++||||+|||++|.++... .++.|..++|||||||||||++|||++ +
T Consensus 418 ~~asFSS~GPt~dg-------~~KpDIaAPG~~I~St~~~--------~~~~y~~~SGTSmAAP~VAGvAALLLSalkq~ 482 (1354)
T 3lxu_X 418 NVYTWTSRDPCIDG-------GQGVTVCAPGGAIASVPQF--------TMSKSQLMNGTSMAAPHVAGAVALLISGLKQQ 482 (1354)
T ss_dssp CCCCCCCCSCCSSS-------SCCEEEEEEC-----------------------CCCCGGGCHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCCCccC-------CCcceEEecCceEEEeecC--------CCCceecCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 78999999999886 8999999999999997532 246799999999999999999999987 7
Q ss_pred CCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCCeeeecCchhhhhccccCC
Q 003469 616 HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAGYEDYLGFLCTTP 695 (817)
Q Consensus 616 ~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~ 695 (817)
+|+|++.+||++|++||+++.. .+++.||+|+||+.+|++..+.++....+++.|+|..+
T Consensus 483 ~P~LTp~qVk~lL~~TA~~~~~--------------------~~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~ 542 (1354)
T 3lxu_X 483 NIEYSPYSIKRAISVTATKLGY--------------------VDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVG 542 (1354)
T ss_dssp TCCCCHHHHHHHHHTTSBCCTT--------------------SCTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCccCCC--------------------CCcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEec
Confidence 9999999999999999998753 23468999999999999998888888889999999876
Q ss_pred CCCceeeecccCcccCCCCCCCCcCCCCcEEEeeecceEEEEEEEE----E---cCCC--ceEEEEEEcCCCcEEEEecC
Q 003469 696 GIDIHEIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQVVTRTVT----N---VAEE--ETYSMSARMQPAIAIEVNPP 766 (817)
Q Consensus 696 ~~~~~~i~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~tv~----n---~~~~--~ty~~~~~~~~~~~v~~~~~ 766 (817)
..+...|..... .. .....++.+|+ | .... ..|.+.+.......+--.|.
T Consensus 543 ~~~~rgIylR~~-------------~~--------~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~~wv~~p~ 601 (1354)
T 3lxu_X 543 NNADKGIHLRQG-------------VQ--------RNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGA 601 (1354)
T ss_dssp TTTBSSEEECSS-------------CC--------CSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESSTTEEECS
T ss_pred CCCCCceEEecc-------------cc--------CCceEEEEEEeeeecCcccCChhhccceEEEEEEecCCCceeccc
Confidence 433333321110 00 11122222222 1 1111 22322222111112222377
Q ss_pred eEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEe----CCCcEEEEeEEEEe
Q 003469 767 AMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKG----SRGHKVNIPVIAQG 814 (817)
Q Consensus 767 ~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~----~~~~~l~iP~~~~~ 814 (817)
.+.| .++.++|.|++++........++.|.... ..++.++||+.|..
T Consensus 602 ~l~l-~~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 602 FLDL-SYGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp CEEC-TTSCEEEEEEECGGGCCSEEEEEEEEEEESSCTTSCCSEEEEEEEEE
T ss_pred ceee-cCCCceEEEEECCCCCCCcceeEEEEEEEcCCcccCceEEeeEEEEe
Confidence 7777 78999999999998777777788888764 34788999997743
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=407.60 Aligned_cols=225 Identities=30% Similarity=0.407 Sum_probs=195.2
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
.+|+||+|||||||||++||+|.++ +..+++|. .++
T Consensus 28 ~~G~gv~VaViDsGvd~~H~~l~~~-----------------------------~~~~~~~~---------------~~~ 63 (279)
T 2pwa_A 28 SAGQGSCVYVIDTGIEASHPEFEGR-----------------------------AQMVKTYY---------------YSS 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEESS---------------SCS
T ss_pred CCCCCCEEEEEeCCCCCCChhHhCc-----------------------------cccccCCC---------------CCC
Confidence 7999999999999999999999975 34445553 134
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC-------cEE
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV-------DIL 304 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~-------dVI 304 (817)
.|+.||||||||||+|+ ..||||+|+|+.+|++++.+.+..+++++||+|++++++ +||
T Consensus 64 ~d~~gHGT~vAgiia~~--------------~~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vi 129 (279)
T 2pwa_A 64 RDGNGHGTHCAGTVGSR--------------TYGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA 129 (279)
T ss_dssp SCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred CCCCCCHHHHHHHHHhc--------------ccccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEE
Confidence 57899999999999996 269999999999999998766888999999999999987 999
Q ss_pred EecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469 305 SLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 305 n~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
|||||.. ..+.+..+++++.++|++||+||||+|.... ..|+..+++|+|||++.
T Consensus 130 n~S~G~~---------~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 185 (279)
T 2pwa_A 130 SLSLGGG---------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------------- 185 (279)
T ss_dssp EECCCEE---------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred EecCCCC---------CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC---------------
Confidence 9999963 2457889999999999999999999998653 35778899999998531
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.+.++.
T Consensus 186 --------------------------------------------------------------------------~~~~~~ 191 (279)
T 2pwa_A 186 --------------------------------------------------------------------------YDRRSS 191 (279)
T ss_dssp --------------------------------------------------------------------------TSBBCT
T ss_pred --------------------------------------------------------------------------CCCcCC
Confidence 126789
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHH
Q 003469 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 623 (817)
||+|||.+ ||+|||++|+++++ ++.|..++|||||||||||++|||+|+ |++++.|
T Consensus 192 ~S~~G~~~-------------di~APG~~i~s~~~----------~~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~ 247 (279)
T 2pwa_A 192 FSNYGSVL-------------DIFGPGTDILSTWI----------GGSTRSISGTSMATPHVAGLAAYLMTL-GKTTAAS 247 (279)
T ss_dssp TCCBSTTC-------------CEEEECSSEEEEET----------TTEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTT
T ss_pred cCCCCCcc-------------eEEEecCCeEEeec----------CCCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 99999975 99999999999984 457999999999999999999999999 9999999
Q ss_pred HHHHHhccccccc
Q 003469 624 IKSALMTTTTKLD 636 (817)
Q Consensus 624 ik~~L~~TA~~~~ 636 (817)
||++|++||++..
T Consensus 248 v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 248 ACRYIADTANKGD 260 (279)
T ss_dssp HHHHHHHHSEESC
T ss_pred HHHHHHHhCcccc
Confidence 9999999998753
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-47 Score=403.74 Aligned_cols=237 Identities=30% Similarity=0.402 Sum_probs=201.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++ +..+++|.++
T Consensus 22 ~~~~~----~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------------~~~~~d~~~~------ 62 (278)
T 2b6n_A 22 NNYHT----DYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------------ASSGYDFIDN------ 62 (278)
T ss_dssp SEEEC----SCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTTT------
T ss_pred hhccc----CCCCCCCEEEEEeCCCCCCChhHhcc-----------------------------cccCeecCCC------
Confidence 45665 68999999999999999999999974 3445566432
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH--c
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH--D 299 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~--~ 299 (817)
..++.|+.||||||||||+|+. .||||+|+|+.+|++++.+.+..+++++||+|+++ .
T Consensus 63 ------~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~ 122 (278)
T 2b6n_A 63 ------DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNAS 122 (278)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred ------CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCC
Confidence 1245688999999999999962 59999999999999988767888999999999998 5
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+++|||||||... ...+..+++++.++|++||+||||+|.... ..|+..+++|+|||++.
T Consensus 123 g~~Vin~S~G~~~---------~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 183 (278)
T 2b6n_A 123 GPAVANMSLGGGA---------SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS---------- 183 (278)
T ss_dssp SSEEEEECCCEEC---------CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred CCeEEEECCCCCc---------CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC----------
Confidence 9999999999742 357888999999999999999999998653 34678899999998531
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 184 -------------------------------------------------------------------------------~ 184 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------N 184 (278)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.++.||++||.. ||+|||++|++++.. .++.|..++|||||||||||++|||+|++|+
T Consensus 185 ~~~~~~S~~G~~~-------------di~ApG~~i~s~~~~--------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 243 (278)
T 2b6n_A 185 DSRSSFSNYGTCL-------------DIYAPGSSITSSWYT--------SNSATNTISGTSMASPHVAGVAALYLDENPN 243 (278)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTT--------STTCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCC-------------eEEeCCCCeECcccC--------CCCCEEEeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 2678899999865 999999999999853 2358999999999999999999999999999
Q ss_pred CCHHHHHHHHhccccccc
Q 003469 619 WSPAAIKSALMTTTTKLD 636 (817)
Q Consensus 619 ls~~~ik~~L~~TA~~~~ 636 (817)
|++.|||++|++||++..
T Consensus 244 lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 244 LSPAQVTNLLKTRATADK 261 (278)
T ss_dssp CCHHHHHHHHHHHSEESC
T ss_pred CCHHHHHHHHHHhCccCC
Confidence 999999999999998753
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=402.24 Aligned_cols=236 Identities=27% Similarity=0.382 Sum_probs=202.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++ +...++|..
T Consensus 22 ~a~~~----~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~------- 61 (276)
T 4dzt_A 22 NSYTY----TATGRGVNVYVIDTGIRTTHREFGGR-----------------------------ARVGYDALG------- 61 (276)
T ss_dssp SCEEC----SCCCTTCEEEEEESCCCTTCGGGTTC-----------------------------EEEEEETTS-------
T ss_pred cceec----CCCCCCcEEEEEccCCCCCChhHccC-----------------------------eeccccCCC-------
Confidence 46666 68999999999999999999999865 444455432
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc--
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-- 299 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-- 299 (817)
..+.|.+||||||||||+|.. .||||+|+|+.+|++.+.+.+..+++++|++|++++
T Consensus 62 -------~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~ 120 (276)
T 4dzt_A 62 -------GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHR 120 (276)
T ss_dssp -------SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCC
T ss_pred -------CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence 244578999999999999962 699999999999999987778899999999999997
Q ss_pred CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC-ccCCCCcEEEEeeeecCcceeeEEEe
Q 003469 300 GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT-LVSYSPWITTVAAAIDDRRYKNHLNL 378 (817)
Q Consensus 300 g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~ 378 (817)
+++|||||||.. ....+..+++++.++|++||+||||+|..... .|+..+++|+|||++.
T Consensus 121 ~~~vin~S~g~~---------~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (276)
T 4dzt_A 121 RPAVANMSLGGG---------VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS---------- 181 (276)
T ss_dssp SSEEEEECCCEE---------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred CCeEEEECCCCC---------CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC----------
Confidence 999999999963 24578899999999999999999999976544 3678899999998531
Q ss_pred CCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHH
Q 003469 379 GNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSET 458 (817)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~ 458 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCC
Q 003469 459 AKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSA 538 (817)
Q Consensus 459 ~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (817)
.
T Consensus 182 -------------------------------------------------------------------------------~ 182 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------S 182 (276)
T ss_dssp -------------------------------------------------------------------------------T
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred CccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCC
Q 003469 539 PQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPY 618 (817)
Q Consensus 539 ~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 618 (817)
+.++.||++||.. ||+|||++|.+++.. .+..|..++|||||||||||++|||+|++|+
T Consensus 183 ~~~~~~S~~g~~~-------------dv~ApG~~i~s~~~~--------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~ 241 (276)
T 4dzt_A 183 DARASFSNYGSCV-------------DLFAPGASIPSAWYT--------SDTATQTLNGTSMATPHVAGVAALYLEQNPS 241 (276)
T ss_dssp SBBCTTCCBSTTC-------------CEEEECSSEEEECTT--------SSSCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCcCCcCCCCCCc-------------eEEeCCCCeEccccC--------CCCceEEeeEHHHHHHHHHHHHHHHHHHCCC
Confidence 2678999999976 999999999999854 2357999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccccccc
Q 003469 619 WSPAAIKSALMTTTTKLDR 637 (817)
Q Consensus 619 ls~~~ik~~L~~TA~~~~~ 637 (817)
++++|||++|++||++...
T Consensus 242 lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 242 ATPASVASAILNGATTGRL 260 (276)
T ss_dssp CCHHHHHHHHHHHSEESCC
T ss_pred CCHHHHHHHHHhhCcCCcc
Confidence 9999999999999998654
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=424.66 Aligned_cols=293 Identities=19% Similarity=0.208 Sum_probs=214.5
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++.. ...+++|.+..
T Consensus 29 ~aw~~----g~~G~gv~VaViDtGvd~~Hpdl~~~~~---------------------------~~~~~d~~~~~----- 72 (471)
T 1p8j_A 29 EAWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------------PGASFDVNDQD----- 72 (471)
T ss_dssp HHHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------------GGGCEETTTTB-----
T ss_pred HHHhc----CCCCCCCEEEEEeCCcCCCChhHhhccC---------------------------ccCcccccCCC-----
Confidence 46665 6899999999999999999999997510 01123443220
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DG 300 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g 300 (817)
..+.+...+.|.+||||||||||||...++ ..+.||||+|+|+.+|+++ +..+++++|++++++ ++
T Consensus 73 -~~p~~~~~~~d~~gHGT~vAGiiaa~~~n~--------~g~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~ 139 (471)
T 1p8j_A 73 -PDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNH 139 (471)
T ss_dssp -SCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTT
T ss_pred -CCCCCccCCCCCCCcHHHHHHHHHeeccCC--------CCCEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCC
Confidence 001111235688999999999999964322 1358999999999999985 345689999999999 99
Q ss_pred CcEEEecCCCCCCCCCCccCCCChHHHHHHHHHH-----cCceEEEecCCCCCCCCC----ccCCCCcEEEEeeeecCcc
Q 003469 301 VDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVK-----AGVFVAQAAGNGGPFPKT----LVSYSPWITTVAAAIDDRR 371 (817)
Q Consensus 301 ~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~~~vitVgA~~~~~~ 371 (817)
++|||||||........ ......+..++.++.+ +|++||+||||+|..... ....++++|+|||++.
T Consensus 140 ~~Vin~S~G~~~~~~~~-~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~--- 215 (471)
T 1p8j_A 140 IHIYSASWGPEDDGKTV-DGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ--- 215 (471)
T ss_dssp CCEEEECCBSCCSSSCC-BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---
T ss_pred CeEEEeccCcCCCCCcc-cCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC---
Confidence 99999999975321110 1112334556665553 699999999999975321 1234688999998531
Q ss_pred eeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcch
Q 003469 372 YKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTAS 451 (817)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~ 451 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCc
Q 003469 452 IKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLM 531 (817)
Q Consensus 452 ~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (817)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHH
Q 003469 532 PILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAAL 611 (817)
Q Consensus 532 ~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 611 (817)
.+.++.||++||.... ..+|...+||.+|+++.. .++.|..++|||||||||||++||
T Consensus 216 ------~g~~a~~S~~g~~~~~-------~~~~~~~~~g~~i~st~~---------~~~~~~~~sGTS~AaP~VAG~aAL 273 (471)
T 1p8j_A 216 ------FGNVPWYSEACSSTLA-------TTYSSGNQNEKQIVTTDL---------RQKCTESHTGTSASAPLAAGIIAL 273 (471)
T ss_dssp ------TSCCCTTCCBCTTCCE-------EEECCCSTTSCCEEEEET---------TTEEEEEECSHHHHHHHHHHHHHH
T ss_pred ------CCCcccccCCCCcceE-------EeCCCCCCCCCCEEEeeC---------CCCccccCCCcccccchhhhHHHH
Confidence 1267889999998753 567888888899999974 235799999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCC
Q 003469 612 VKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPG 677 (817)
Q Consensus 612 l~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 677 (817)
|+|++|+|++++||.+|++||++++......... .........||+|+||+.+|++.+
T Consensus 274 l~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n--------~~g~~~~~~~G~G~vda~~Av~~a 331 (471)
T 1p8j_A 274 TLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVALA 331 (471)
T ss_dssp HHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec--------CCCcccCCCCCCEEEcHhHHHHHh
Confidence 9999999999999999999999876432110000 001123468999999999999743
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=417.83 Aligned_cols=286 Identities=21% Similarity=0.219 Sum_probs=202.9
Q ss_pred CCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccC
Q 003469 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAF 222 (817)
Q Consensus 143 ~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~ 222 (817)
.|.. +++|+||+|+|||||||++||+|.++. ....+++..+.
T Consensus 18 aw~~----~~tG~GV~VaVIDTGId~~HpdL~gr~----------------------------~~~~~~~v~~~------ 59 (546)
T 2qtw_B 18 EYQP----PDGGSLVEVYLLDTSIQSDHREIEGRV----------------------------MVTDFENVPEE------ 59 (546)
T ss_dssp ----------CCTTSEEEEEESCCCTTSTTTTTTE----------------------------EEEEEECCCCC------
T ss_pred hccc----CCCCCCcEEEEECCCCCCCChHHcccc----------------------------cccCcccccCC------
Confidence 5654 689999999999999999999999761 01111111000
Q ss_pred CCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc---
Q 003469 223 NPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD--- 299 (817)
Q Consensus 223 ~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~--- 299 (817)
+.......+.|.+||||||||||+|+. .||||+|+|+.+|++++.+.++.+++++||+|+++.
T Consensus 60 dg~~f~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~ 125 (546)
T 2qtw_B 60 DGTRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLV 125 (546)
T ss_dssp C-------CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhh
Confidence 000001235688999999999999963 599999999999999887667889999999999984
Q ss_pred ---CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-CccCCCCcEEEEeeeecCcceeeE
Q 003469 300 ---GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-TLVSYSPWITTVAAAIDDRRYKNH 375 (817)
Q Consensus 300 ---g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~~~vitVgA~~~~~~~~~~ 375 (817)
+++|||||||.. +...+..+++++.++|++||+||||+|.+.. ..|+..+++|+|||++.+...
T Consensus 126 ~~~g~~VINmSlGg~---------~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~--- 193 (546)
T 2qtw_B 126 QPVGPLVVLLPLAGG---------YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--- 193 (546)
T ss_dssp SCCSCEEEEECEEEE---------CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB---
T ss_pred ccCCCeEEEecCCCC---------CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc---
Confidence 899999999963 2457889999999999999999999997653 347788999999996422100
Q ss_pred EEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHH
Q 003469 376 LNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKV 455 (817)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~ 455 (817)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccccc
Q 003469 456 SETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILH 535 (817)
Q Consensus 456 ~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (817)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHh
Q 003469 536 KSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQK 615 (817)
Q Consensus 536 ~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 615 (817)
...-+.||++||.+ ||+|||++|+++++.. +..|..++|||||||||||++|||+|+
T Consensus 194 --a~~s~~fSn~G~~v-------------DI~APG~~I~St~~~~--------~~~y~~~SGTSmAAP~VAG~aALlls~ 250 (546)
T 2qtw_B 194 --VTLGTLGTNFGRCV-------------DLFAPGEDIIGASSDC--------STCFVSQSGTSQAAAHVAGIAAMMLSA 250 (546)
T ss_dssp --CEETTEECCBSTTC-------------CEEEECSSEEEECTTS--------TTCEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred --ccccCCcCCCCCcc-------------eEEecCccEEeeccCC--------CCcEeeeCcCcHHHHHHHHHHHHHHHH
Confidence 00011288888754 9999999999998542 357999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccccccccCCCccccccchhhhhh-ccccCCCCcccccc--cCcccccC
Q 003469 616 HPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAM-KLVTATPFDYGSGH--VNPRAALD 675 (817)
Q Consensus 616 ~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~G~G~--vn~~~Al~ 675 (817)
+|+|+++|||++|++||.+................+.. ...+.....+|+|+ .++..+..
T Consensus 251 ~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 251 EPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp STTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 99999999999999999875321110000000000000 01112355688888 77777765
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-46 Score=395.32 Aligned_cols=225 Identities=31% Similarity=0.432 Sum_probs=194.2
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
.+|+||+|||||||||++||+|.++ +...++|.. ..
T Consensus 29 ~~G~gv~VaViDtGvd~~h~~l~~~-----------------------------~~~~~~~~~---------------~~ 64 (279)
T 3f7m_A 29 SAGAGACVYVIDTGVEDTHPDFEGR-----------------------------AKQIKSYAS---------------TA 64 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEECSS---------------SS
T ss_pred CCCCCCEEEEEcCCCCCCChhhccc-----------------------------cccccCCCC---------------CC
Confidence 4999999999999999999999975 334444422 12
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcC-------CcEE
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG-------VDIL 304 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g-------~dVI 304 (817)
.|.+||||||||||+|+ ..||||+|+|+.+|+++..+.+..+++++|++|+++++ ++||
T Consensus 65 ~d~~gHGT~vAgii~~~--------------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vi 130 (279)
T 3f7m_A 65 RDGHGHGTHCAGTIGSK--------------TWGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVA 130 (279)
T ss_dssp SCSSSHHHHHHHHHHCT--------------TTCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred CCCCCcHHHHHHHHhcC--------------ccccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEE
Confidence 27889999999999996 26999999999999998877788899999999999986 8999
Q ss_pred EecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC-ccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469 305 SLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT-LVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 305 n~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
|||||.. ....+..+++++.++|++||+||||+|..... .++..+++|+|||++.
T Consensus 131 n~S~g~~---------~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------------- 186 (279)
T 3f7m_A 131 SMSLGGG---------YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS--------------- 186 (279)
T ss_dssp EECCCEE---------CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred EeCCCcC---------ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC---------------
Confidence 9999963 34678899999999999999999999986543 3678899999998531
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.+.++.
T Consensus 187 --------------------------------------------------------------------------~~~~~~ 192 (279)
T 3f7m_A 187 --------------------------------------------------------------------------NDVRST 192 (279)
T ss_dssp --------------------------------------------------------------------------TSBBCT
T ss_pred --------------------------------------------------------------------------CCCCCC
Confidence 126788
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHH
Q 003469 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 623 (817)
||++||.. ||+|||++|++++ .++.|..++|||||||||||++|||+|++|+ ++++
T Consensus 193 ~S~~g~~~-------------di~ApG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~ 248 (279)
T 3f7m_A 193 FSNYGRVV-------------DIFAPGTSITSTW----------IGGRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGA 248 (279)
T ss_dssp TCCBSTTC-------------CEEEECSSEEEEC----------GGGCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTT
T ss_pred CCCCCCCC-------------eEEECCCCeEeec----------CCCCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHH
Confidence 99999976 9999999999998 4567999999999999999999999999999 9999
Q ss_pred HHHHHhccccccc
Q 003469 624 IKSALMTTTTKLD 636 (817)
Q Consensus 624 ik~~L~~TA~~~~ 636 (817)
||.+|++||++..
T Consensus 249 v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 249 MCGRIQTLSTKNV 261 (279)
T ss_dssp HHHHHHHHSEESC
T ss_pred HHHHHHHhccccc
Confidence 9999999999854
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=418.15 Aligned_cols=286 Identities=20% Similarity=0.225 Sum_probs=211.2
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++. + ..++++|.++.
T Consensus 45 ~aw~~----g~tG~gv~VaViDtGvd~~Hpdl~~~~---------~------------------~~~~~d~~~~~----- 88 (503)
T 2id4_A 45 DLWYN----NITGAGVVAAIVDDGLDYENEDLKDNF---------C------------------AEGSWDFNDNT----- 88 (503)
T ss_dssp HHHHT----TCSCTTCEEEEEESCCCTTSTTTTTTB---------C------------------GGGCEETTTTB-----
T ss_pred HHHhc----CCCCCCeEEEEEeCCCCCCChhHhhcc---------c------------------ccCcccCCCCC-----
Confidence 45665 689999999999999999999999861 1 01234443320
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
.+..+..|++||||||||||||...++ ..+.||||+|+|+.+|++.. .+..+++++||+|+++++
T Consensus 89 ----~~~~p~~d~~gHGT~vAGiiaa~~~n~--------~~~~GvAp~a~i~~~rv~~~--~~~~~~~~~ai~~a~~~~- 153 (503)
T 2id4_A 89 ----NLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDVN- 153 (503)
T ss_dssp ----SCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTTC-
T ss_pred ----CCCCCCCCCCChHHHHHHHHHhccCCC--------CCcEEECCCCEEEEEEeeCC--CCChHHHHHHHHhHhhcC-
Confidence 011123578899999999999975322 13589999999999999974 467788999999999998
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHH-----HcCceEEEecCCCCCCCC--Ccc--CCCCcEEEEeeeecCcce
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAV-----KAGVFVAQAAGNGGPFPK--TLV--SYSPWITTVAAAIDDRRY 372 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~G~~~~--~~~--~~~~~vitVgA~~~~~~~ 372 (817)
+|||||||........ ......+..++.++. .+|++||+||||+|.... ..+ ..++++|+|||++.
T Consensus 154 ~Iin~S~G~~~~~~~~-~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~---- 228 (503)
T 2id4_A 154 DIYSCSWGPADDGRHL-QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH---- 228 (503)
T ss_dssp SEEEECEESCCSSSCC-BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT----
T ss_pred CEEEeCCCcCCCCccc-cCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC----
Confidence 9999999975321111 112335667777766 479999999999997532 222 25678999998531
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCcccc----CCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILA----PGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGI 608 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~A----PG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 608 (817)
.+.++.||++||.. |++| ||..|+++.. .++.|..++|||||||||||+
T Consensus 229 -----~~~~a~~S~~g~~~-------------~~~a~~~gpG~~I~st~~---------~~~~~~~~sGTS~AaP~VAG~ 281 (503)
T 2id4_A 229 -----KDLHPPYSEGCSAV-------------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGV 281 (503)
T ss_dssp -----TSCCCTTCCCCTTE-------------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHH
T ss_pred -----CCCcCCcCCCCCcc-------------eEeecCCCCCCceEeecC---------CCCceecCCCccccchhhhHH
Confidence 12678899999987 6666 9999999853 346799999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCCC
Q 003469 609 AALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPG 677 (817)
Q Consensus 609 aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 677 (817)
+|||+|++|+|++++||.+|++||+++.....+- +... .........||+|+||+.+|++..
T Consensus 282 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~-~~~~------~~g~~~~~~~G~G~vda~~Av~~a 343 (503)
T 2id4_A 282 YTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD-WRDS------AMGKKYSHRYGFGKIDAHKLIEMS 343 (503)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC-CEEC------SSSSEEBTTTBTCBCCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCC-ceec------CCCCccCcccCCcEecHHHHHHHH
Confidence 9999999999999999999999999876431100 0000 001122457999999999999743
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=411.24 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=106.3
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||++||||.++. + .+.++|..+ ..+..+
T Consensus 66 g~tG~GV~VaViDtGid~~HpDL~~n~---------~-------------------~~~~~~~~~---------~~dp~p 108 (600)
T 3hjr_A 66 GVLGQGVNVAVVDDGLAIAHPDLADNV---------R-------------------PGSKNVVTG---------SDDPTP 108 (600)
T ss_dssp TCSCTTCEEEEESSCCCTTCTTTGGGB---------C-------------------SCCBCTTTS---------SSCCCC
T ss_pred CCCCCCeEEEEEcCCCCCCChhHhhcc---------c-------------------cCcceeecC---------CCCCCC
Confidence 799999999999999999999999761 1 111222211 011122
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHH-HHHHHcCCcEEEecCC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAI-DQAVHDGVDILSLSVG 309 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai-~~a~~~g~dVIn~SlG 309 (817)
..|.+||||||||||||..+ +. .+.||||+|+|+.+|++++.+.+..++++.|+ +++..++++|||||||
T Consensus 109 ~~~~~gHGThVAGiIAa~~n------~~---g~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G 179 (600)
T 3hjr_A 109 TDPDTAHGTSVSGIIAAVDN------AI---GTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYG 179 (600)
T ss_dssp CSTTCCHHHHHHHHHHCCSS------SS---SCCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCC
T ss_pred CCCCCChHHHHHHHHhEeCC------CC---CcEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccC
Confidence 34578999999999998632 11 35899999999999999987777888887776 7788899999999999
Q ss_pred CCCCCCCCc-cCCCChHHHHHHHH--HHcCceEEEecCCCCCC
Q 003469 310 PNSPPATTK-TTFLNPFDVTLLAA--VKAGVFVAQAAGNGGPF 349 (817)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~a~~~a--~~~Gv~vV~AAGN~G~~ 349 (817)
......... ......+..++..+ ..+|+++|+||||.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~ 222 (600)
T 3hjr_A 180 MSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNK 222 (600)
T ss_dssp CCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSE
T ss_pred ccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCcccc
Confidence 754322110 00111222223222 24799999999998653
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-25 Score=255.12 Aligned_cols=100 Identities=30% Similarity=0.346 Sum_probs=78.8
Q ss_pred ceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH---cCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCce
Q 003469 262 RASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH---DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVF 338 (817)
Q Consensus 262 ~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~---~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~ 338 (817)
.+.||||+|+|+.|++.+ ..++++++|+||++ ++++|||||||..... ....+.+.++.++.+|..+||+
T Consensus 273 ~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~--~~~~~~~~~~~~~~~a~~~Gi~ 345 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDS--WAPASIAAMNRAFLDAAALGVT 345 (552)
T ss_dssp HHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGG--SCHHHHHHHHHHHHHHHHTTCE
T ss_pred hhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCccc--CCHHHHHHHHHHHHHHHhCCeE
Confidence 368999999999998732 45689999999998 7999999999975321 0011234677888888999999
Q ss_pred EEEecCCCCCCC--------CCccCCCCcEEEEeeeec
Q 003469 339 VAQAAGNGGPFP--------KTLVSYSPWITTVAAAID 368 (817)
Q Consensus 339 vV~AAGN~G~~~--------~~~~~~~~~vitVgA~~~ 368 (817)
||+||||+|... ..+++.+|+|++|||++.
T Consensus 346 vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 346 VLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp EEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred EEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 999999999653 345678999999999863
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-21 Score=213.93 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=79.7
Q ss_pred eeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEe
Q 003469 264 SGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQA 342 (817)
Q Consensus 264 ~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~A 342 (817)
..+||+++++.|++.+.. .+..++++.+|+||++ ++++|||||||....... ...+.+.++.++.+|..+||+||+|
T Consensus 90 g~~aP~a~~~~~~~~~~~-~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~-~~~~~~~~~~~~~~a~~~Gitvv~A 167 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQS-ASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADAN-ADGTLQAEDRIFATAAAQGQTFSVS 167 (372)
T ss_dssp HHTTSCEEEEEEEEECTT-SSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHH-HTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred hhcCCCCcEEEEEeCCCC-CcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCc-hHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 347899999999998653 3567789999999998 899999999997421000 0112346778888888999999999
Q ss_pred cCCCCCCCC-------------CccCCCCcEEEEeeeec
Q 003469 343 AGNGGPFPK-------------TLVSYSPWITTVAAAID 368 (817)
Q Consensus 343 AGN~G~~~~-------------~~~~~~~~vitVgA~~~ 368 (817)
|||+|...+ ..|+.+|+|++||+++.
T Consensus 168 sGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~ 206 (372)
T 1ga6_A 168 SGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 206 (372)
T ss_dssp CCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeec
Confidence 999997532 34678999999999863
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.5e-10 Score=125.49 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=55.4
Q ss_pred HHHHHHHHHH--HcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC----------CCccC
Q 003469 288 DVVAAIDQAV--HDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP----------KTLVS 355 (817)
Q Consensus 288 di~~ai~~a~--~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----------~~~~~ 355 (817)
.++..+++.. .+-++|||+|||....... ..+.+.+..++.++..+||.|++|+||+|... ...|+
T Consensus 284 ~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~--~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pa 361 (544)
T 3edy_A 284 PFLQWLMLLSNESALPHVHTVSYGDDEDSLS--SAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPA 361 (544)
T ss_dssp HHHHHHHHHTTCSSCCSEEEEECCEEGGGSC--HHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETT
T ss_pred cHHHHHHHHhccCCCCcEEEecCCCcccccC--HHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcC
Confidence 3444444433 2468999999997532110 12334566777888899999999999999753 24567
Q ss_pred CCCcEEEEeeeec
Q 003469 356 YSPWITTVAAAID 368 (817)
Q Consensus 356 ~~~~vitVgA~~~ 368 (817)
.+|+|++||+++.
T Consensus 362 s~P~VtaVGgT~l 374 (544)
T 3edy_A 362 SSPYVTTVGGTSF 374 (544)
T ss_dssp TCTTSEEEEEEEE
T ss_pred CCCcEEEEeeeec
Confidence 8999999999863
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=78.48 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=42.6
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceeccccCC
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTH 132 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~~~~~ 132 (817)
..++.++|.. |+||+++++++++++|+++|+|.+||+++.++++++.
T Consensus 33 g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 33 GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 4678999998 9999999999999999999999999999999887653
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=83.32 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=41.0
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceecc
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~ 128 (817)
..++.++|.+.||||+++++++++++|+++|+|.+||+++.++.
T Consensus 70 ~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 70 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp CCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 46789999999999999999999999999999999999998764
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.45 E-value=7.2e-07 Score=80.75 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=40.9
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceecc
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~ 128 (817)
..++.++|++.||||++++++++++.|+++|+|.+|++++.++.
T Consensus 80 g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 80 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 46889999999999999999999999999999999999998764
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.1e-06 Score=72.38 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=37.2
Q ss_pred eEEEEe-ccccceEEEEcCHHHHHHHHcC--CCceEEEccceecc
Q 003469 87 KKLYSY-KHLINGFAVHITPDQAEILQRA--PGVKSVERDWKVRR 128 (817)
Q Consensus 87 ~~~~~y-~~~~ng~sv~~~~~~~~~L~~~--p~V~~V~~~~~~~~ 128 (817)
++.+.| ..+|+||++.++++.+++|+++ |.|.+||+++.++.
T Consensus 31 ~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 31 TITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp CCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred ceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 566777 4799999999999999999999 89999999988764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=70.94 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred CCCCCCCccccccc------cccccEEEEecccccccCc-chHHHHHHHHHhcCceEEEEeecCCC--CCCccC-CCCCC
Q 003469 417 SASDCQRPEVLNKN------LVEGNILLCGYSFNFVTGT-ASIKKVSETAKSLGAAGFVLAVENVS--PGTKFD-PVPVG 486 (817)
Q Consensus 417 ~~~~c~~~~~~~~~------~~~gki~~~~~~~~~~~g~-~~~~~~~~~~~~~Ga~~~i~~~~~~~--~~~~~~-~~~~~ 486 (817)
...+|.....+... ..+|+|+|++| |. |.|.+|+.+|+++||.++|+||+... ....+. .....
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~R------G~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~ 155 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQR------GGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVD 155 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEES------CTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCS
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEEC------CCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCc
Confidence 45788765433221 24789999987 67 99999999999999999999998421 111222 22357
Q ss_pred CCeEEEcCchhHHHHHHHHhcc
Q 003469 487 IPGILITDVTKSMDLVDYYNTS 508 (817)
Q Consensus 487 ~p~~~i~~~~~g~~l~~~~~~~ 508 (817)
||.++|.. ++|+.|++.+.+.
T Consensus 156 IPsv~Is~-~~G~~L~~~L~~G 176 (194)
T 3icu_A 156 IVAIMIGN-LKGTKILQSIQRG 176 (194)
T ss_dssp SEEEEECH-HHHHHHHHHHHTT
T ss_pred eeEEEECH-HHHHHHHHHHHCC
Confidence 99999988 9999999998754
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.36 E-value=0.005 Score=48.61 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=38.9
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceecc
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~ 128 (817)
+.++.++|. .++++++++|++.++.|+++|+|.+||+|..++.
T Consensus 22 gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~a 64 (65)
T 2z30_B 22 GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVL 64 (65)
T ss_dssp TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEEE
T ss_pred CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEEc
Confidence 678888885 8999999999999999999999999999987754
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.025 Score=50.87 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=54.0
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEEEeCCCcEEEEeE
Q 003469 732 KTQVVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICMKGSRGHKVNIPV 810 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~iP~ 810 (817)
.+++.+.+|+|.|+. ..|++... . .++++|.+-+|+||++..++|+|.+... ..+++.+.+.-+++..+.++.
T Consensus 41 ~~~~~~~~l~N~g~~~~~f~~~~~--~--~F~i~P~~g~L~pg~~~~i~V~F~P~~~--g~~~~~l~v~~~~g~~~~v~L 114 (122)
T 2ys4_A 41 YSTQKILLVRNIGNKNAVFHIKTC--R--PFSIEPAIGTLNVGESMQLEVEFEPQSV--GDHSGRLIVCYDTGEKVFVSL 114 (122)
T ss_dssp SCEEEEEEEECCSSSCEEEEEECC--T--TEEEESSEEEECTTCEEEEEEEECCSSS--BCCCCBCEEEESSSCEECCEE
T ss_pred CeEEEEEEEEECCCCCEEEEEecC--C--CeEEECCcCEECCCCEEEEEEEEEcCCC--ccEEEEEEEEECCCCEEEEEE
Confidence 455566789999998 77766642 2 3677899999999999999999998743 235566777656666666654
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.15 Score=56.25 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=55.9
Q ss_pred cccccccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCC-ccC-CCCCCCCeEEEcCchhHHHHH
Q 003469 425 EVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGT-KFD-PVPVGIPGILITDVTKSMDLV 502 (817)
Q Consensus 425 ~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~-~~~-~~~~~~p~~~i~~~~~g~~l~ 502 (817)
.++...+++|||+++.+ |.|.+.+|+.+|+++||.++|+|++...... .+. .....+|.+.+.. ++++.|.
T Consensus 106 ~D~~~~dv~GkIvlv~~------g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~-~~a~~L~ 178 (421)
T 2ek8_A 106 ADVAGKDLNGKIALIQR------GNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITK-QEGDALA 178 (421)
T ss_dssp TTTTTSCCTTSEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECH-HHHHHHH
T ss_pred hhcCCCCcCceEEEEeC------CCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCH-HHHHHHH
Confidence 34444578999999976 5678999999999999999999998632211 111 1345789988776 7888888
Q ss_pred HHHh
Q 003469 503 DYYN 506 (817)
Q Consensus 503 ~~~~ 506 (817)
..+.
T Consensus 179 ~~l~ 182 (421)
T 2ek8_A 179 ANLR 182 (421)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8773
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=90.78 E-value=1.4 Score=39.02 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=42.7
Q ss_pred EEEEEEEEcCCC-ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecC
Q 003469 735 VVTRTVTNVAEE-ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSV 787 (817)
Q Consensus 735 ~~~~tv~n~~~~-~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~ 787 (817)
..+..|.|.... .+|.+++....++.+. .+..|+|+||+.+++.|.+..+..
T Consensus 34 ~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 34 TYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQVEPGEVLNLPMSLGADPD 86 (118)
T ss_dssp EEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEECTTCEEEEEEEEEECGG
T ss_pred EEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEECCCCEEEEEEEEEEChH
Confidence 466689999999 9999999876665553 255799999999999999999764
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.6 Score=39.85 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=58.1
Q ss_pred ceEEEEEEEEEcCCC-ceEEEEEEcC----CCcEEEEecCeEEEcCCCEEEEEEEEEEecC-------CCceEEEEEEEE
Q 003469 732 KTQVVTRTVTNVAEE-ETYSMSARMQ----PAIAIEVNPPAMTLKPGASRKFTVTLTVRSV-------TGTYSFGEICMK 799 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~-~ty~~~~~~~----~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~-------~~~~~~G~i~~~ 799 (817)
..++-+.+|+|.|.. .+|.+..... ..--++++|.+-+|+||++.+++|++.+.+. ....++--|++.
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 334556689999998 8888874321 1123677899999999999999999987542 012345667777
Q ss_pred eCCCcEEEEeEEE
Q 003469 800 GSRGHKVNIPVIA 812 (817)
Q Consensus 800 ~~~~~~l~iP~~~ 812 (817)
=.+|.+..||+.+
T Consensus 123 Ve~G~d~fI~v~g 135 (140)
T 3qbt_B 123 LDRGKDYFLTISG 135 (140)
T ss_dssp ETTSCEEEEEEEE
T ss_pred eecCCcEEEEEec
Confidence 6788888999654
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.68 Score=51.30 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.2
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCC
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSP 579 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~ 579 (817)
.+.++.||++||.. ||+|||++|+++++.
T Consensus 183 ~~~~~~~S~~g~~v-------------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 183 NLDHAAFSQYTDQV-------------EISGPGEAILSTVTV 211 (441)
T ss_dssp TCCBCTTSCCCTTE-------------EEEEECSSEEEECST
T ss_pred CCCCCccccCCCce-------------EEEeccCCeeccccC
Confidence 45799999999865 999999999999853
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.52 E-value=1.6 Score=37.89 Aligned_cols=78 Identities=8% Similarity=0.132 Sum_probs=51.6
Q ss_pred CcEEEeee--cceEEEEEEEEEcCCC-ceEEEEEEc-CCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCCceEEEEEEE
Q 003469 723 PSITVAHL--VKTQVVTRTVTNVAEE-ETYSMSARM-QPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTGTYSFGEICM 798 (817)
Q Consensus 723 ps~~~~~~--~~~~~~~~tv~n~~~~-~ty~~~~~~-~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~~~~~G~i~~ 798 (817)
..+.++.+ ....+.+.+++|.|+. ..|++.... ..+..++++|.+=+|+||++.+|+|+|.+... + .++=.|++
T Consensus 15 ~~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V~f~~~~~-g-~f~~~i~v 92 (112)
T 2e6j_A 15 ELLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQISFSSIIL-G-NFEEEFLV 92 (112)
T ss_dssp SEEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEEEECCCCC-E-EEEEEECE
T ss_pred ccEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEEEEECCCc-c-eEEEEEEE
Confidence 33444443 2334455689999998 888773211 11234677899999999999999999998642 3 34455777
Q ss_pred EeCC
Q 003469 799 KGSR 802 (817)
Q Consensus 799 ~~~~ 802 (817)
..++
T Consensus 93 ~~~g 96 (112)
T 2e6j_A 93 NVNG 96 (112)
T ss_dssp EESS
T ss_pred EECC
Confidence 6543
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.19 E-value=0.19 Score=62.04 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=22.5
Q ss_pred CCCCCceEEEEecceecCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFG 174 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~ 174 (817)
.|.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 489999999999999999999994
|
| >3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A | Back alignment and structure |
|---|
Probab=81.56 E-value=6.4 Score=35.14 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=37.5
Q ss_pred ceEEEEEEEEEcCCC--ceEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEE
Q 003469 732 KTQVVTRTVTNVAEE--ETYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTV 784 (817)
Q Consensus 732 ~~~~~~~tv~n~~~~--~ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~ 784 (817)
...+++.+|+|.|.. ..|++.+... |-.+ ....+.|++|++++|+++..+
T Consensus 33 ~~~ti~vtV~N~G~~~a~~~~V~lyvn-g~~v--~t~~v~La~G~s~tv~f~~~~ 84 (127)
T 3idu_A 33 KLAEYEVHVKNLGGIGVPSTKVRVYIN-GTLY--KNWTVSLGPKEEKVLTFNWTP 84 (127)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEET-TEEE--EEEEEEECTTCEEEEEEEECC
T ss_pred CEEEEEEEEEECCCCccCCcEEEEEEC-CEEE--eeEEeccCCCCeEEEEEEEEc
Confidence 456788899999988 7788887653 3222 233568999999999999874
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=81.39 E-value=3.2 Score=45.88 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=50.6
Q ss_pred cccccccEEEEeccccc-ccC--cchHHHH----HHHHHhcCceEEEEeecCCCCC------C-ccCCCCCCCCeEEEcC
Q 003469 429 KNLVEGNILLCGYSFNF-VTG--TASIKKV----SETAKSLGAAGFVLAVENVSPG------T-KFDPVPVGIPGILITD 494 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~-~~g--~~~~~~~----~~~~~~~Ga~~~i~~~~~~~~~------~-~~~~~~~~~p~~~i~~ 494 (817)
..+++|||+++.++... ..+ -+.+..+ ..+|.++||.++|++++..... . ........||.+.|..
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 45899999999874211 000 0122233 4579999999999999743221 1 1112245799999988
Q ss_pred chhHHHHHHHHhc
Q 003469 495 VTKSMDLVDYYNT 507 (817)
Q Consensus 495 ~~~g~~l~~~~~~ 507 (817)
++++.|...+..
T Consensus 204 -~da~~L~~~l~~ 215 (444)
T 3iib_A 204 -PDADLINAMLKR 215 (444)
T ss_dssp -HHHHHHHHHHTT
T ss_pred -HHHHHHHHHHhC
Confidence 899999888764
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=80.37 E-value=1.2 Score=51.99 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.0
Q ss_pred cccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeec
Q 003469 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVE 472 (817)
Q Consensus 429 ~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~ 472 (817)
..+++|||+|+.+ |.|.+.+|+.+|+++||.|+|+|++
T Consensus 150 ~~~v~GkIvlv~~------G~~~~~~Kv~~A~~~GA~gviiy~d 187 (707)
T 3fed_A 150 GINCTGKIVIARY------GKIFRGNKVKNAMLAGAIGIILYSD 187 (707)
T ss_dssp CCCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred CCCCCCeEEEEEC------CCCCHhHHHHHHHHCCCEEEEEEcC
Confidence 3478999999986 5688999999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 817 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 5e-33 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-06 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 1e-14 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-04 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 7e-14 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-04 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 3e-13 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.003 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 4e-13 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 2e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 0.004 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 3e-10 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 7e-09 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 1e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 4e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-04 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 3e-06 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 0.003 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 5e-05 | |
| d1scjb_ | 71 | d.58.3.2 (B:) Subtilisin prosegment {Bacillus subt | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 130 bits (327), Expect = 5e-33
Identities = 82/552 (14%), Positives = 146/552 (26%), Gaps = 141/552 (25%)
Query: 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQ 210
D + I +DSG H
Sbjct: 18 DSQAGNRTICIIDSGYDRSHN--------------------------------------- 38
Query: 211 HFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRA 270
+ + ++ P + + HG+H A A G+ P
Sbjct: 39 DLNANNVTGTNNSGTGNWYQPGNNNAHGTHVAGTIAAIAN---------NEGVVGVMPNQ 89
Query: 271 RIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLL 330
++ ++F +++ A+ V+ +V S + TT +
Sbjct: 90 NANIHI--VKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTER--NALNT 145
Query: 331 AAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIGLS 390
+ +A AAGN G + + + +VAA + + +
Sbjct: 146 HYNNGVLLIA-AAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQ--------- 195
Query: 391 PATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTA 450
V + ++ L + G T
Sbjct: 196 ----------------VEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTP 239
Query: 451 SIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTT 510
S + + A G + E GT F ++ + LV+ +
Sbjct: 240 SGTSYAPAPINASATGAL--AECTVNGTSFSCG----------NMANKICLVERVGNQGS 287
Query: 511 RDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPG 570
I + + ++ P +++ DA+ DI P
Sbjct: 288 SYPE-----------INSTKACKTAGAKGIIVYSNSALPGLQNPFLVDAN---SDITVPS 333
Query: 571 SLIWAAWSP-------NGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623
+ A T +N + + +GTSMA PH++G+A LV HP S +
Sbjct: 334 VSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQ 393
Query: 624 IKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDPGLIFDAG 683
+++AL T L V G G +N AA
Sbjct: 394 VRAALNATADDLS-------------------VAGRDNQTGYGMINAVAAK--------- 425
Query: 684 YEDYLGFLCTTP 695
YL CT P
Sbjct: 426 --AYLDESCTGP 435
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 80.1 bits (196), Expect = 5e-16
Identities = 45/247 (18%), Positives = 64/247 (25%), Gaps = 31/247 (12%)
Query: 503 DYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLL 562
V S + P + QVA G + +
Sbjct: 278 KEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGTF-RVAGFSSRSD 336
Query: 563 KPDILAPGSLIWAAW--------SPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ 614
+ APG I + + + G + GTSMAAPH+ G+ A++ Q
Sbjct: 337 GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQ 396
Query: 615 KHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
K P P I+ L T + D G G V AAL
Sbjct: 397 KFPNAKPWQIRKLLENTAFDFNGNGW-------------------DHDTGYGLVKLDAAL 437
Query: 675 DPGLIFDAGYEDYLGFLCTTPGIDIHEIRNYTNQPCNYSMGHPYNFNTPSITVAHLVKTQ 734
L G E+ F + G Y T +A
Sbjct: 438 QGPLPTQGGVEE---FQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHID 494
Query: 735 VVTRTVT 741
T +
Sbjct: 495 SGTYDIF 501
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 48.9 bits (115), Expect = 2e-06
Identities = 50/314 (15%), Positives = 78/314 (24%), Gaps = 86/314 (27%)
Query: 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRRLTTHT----PEFLGLP 140
++ +NG V D+ + L G++ VE +K + P+ +
Sbjct: 58 ELPQIKVVSIKLNGMTVKQAYDKIKALAL-KGIRYVEPSYKRELIKPTVVKPNPDMYKIR 116
Query: 141 TGVWPTGG------------GFDR-----------AGEDIVIGFVDSGIYPHHPSFGSHH 177
+ G + +G +I++ VD+G+ HP
Sbjct: 117 KPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQV 176
Query: 178 TDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGH 237
Y P D G
Sbjct: 177 IAGYRPAFDEELPAGTDSS------------------------------------YGGSA 200
Query: 238 GSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG------GFVADVVA 291
G+H A A + G+AP A+I V A
Sbjct: 201 GTHVAGTIAAK---------KDGKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAA 251
Query: 292 AIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK 351
I A G +++ S G T K F A V V A N
Sbjct: 252 GIIWATDHGAKVMNHSWGGWGYSYTMKEAFDY-------AMEHGVVMVVSAGNNTSDSHH 304
Query: 352 TLVSYSPWITTVAA 365
+ P + VAA
Sbjct: 305 QYPAGYPGVIQVAA 318
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 72.7 bits (177), Expect = 1e-14
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 32/112 (28%)
Query: 563 KPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
+ +++APG+ +++ + N A ++GTSMA+PH+AG AAL+ KHP S +
Sbjct: 194 ELEVMAPGAGVYSTYPTNTY----------ATLNGTSMASPHVAGAAALILSKHPNLSAS 243
Query: 623 AIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
+++ L +T T L F YG G +N AA
Sbjct: 244 QVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 40.3 bits (93), Expect = 6e-04
Identities = 37/227 (16%), Positives = 70/227 (30%), Gaps = 56/227 (24%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G ++ + +D+GI HP ++G F
Sbjct: 23 GANVKVAVLDTGIQASHPDL-------------------------------NVVGGASFV 51
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
A DG+GHG+H G+AP +
Sbjct: 52 A------------GEAYNTDGNGHGTHV---------AGTVAALDNTTGVLGVAPSVSLY 90
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV 333
K L G + +V+ I+ A +G+D++++S+G S K N + ++
Sbjct: 91 AVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVA 150
Query: 334 KAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGN 380
AG + +G + + V A + + ++G
Sbjct: 151 AAG----NSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA 193
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 70.7 bits (172), Expect = 7e-14
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 32/113 (28%)
Query: 563 KPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
+ D++APG I + N +GTSMA+PH+AG AAL+ KHP W+
Sbjct: 195 ELDVMAPGVSIQSTLPGNKYGA----------YNGTSMASPHVAGAAALILSKHPNWTNT 244
Query: 623 AIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
++S+L TTTKL F YG G +N +AA
Sbjct: 245 QVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 34/226 (15%), Positives = 68/226 (30%), Gaps = 55/226 (24%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G ++ + +DSGI HP
Sbjct: 23 GSNVKVAVIDSGIDSSHPDL---------------------------------------- 42
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
+ P+ + D + HG+H + G+AP A +
Sbjct: 43 -KVAGGASMVPS-ETNPFQDNNSHGTHV---------AGTVAALNNSIGVLGVAPSASLY 91
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV 333
K L G + ++ I+ A+ + +D++++S+G S A K ++
Sbjct: 92 AVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVA 151
Query: 334 KAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLG 379
AG + + +P P + V A + + ++G
Sbjct: 152 AAGNEGTSGSSSTVGYP----GKYPSVIAVGAVDSSNQRASFSSVG 193
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 68.8 bits (167), Expect = 3e-13
Identities = 35/98 (35%), Positives = 46/98 (46%), Gaps = 22/98 (22%)
Query: 577 WSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
+P ++ + G +A ++GTSMA PH+AG AALVKQK+P WS I++ L T T L
Sbjct: 193 VAPGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG 252
Query: 637 RASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
YGSG VN AA
Sbjct: 253 S----------------------TNLYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 38.4 bits (88), Expect = 0.003
Identities = 45/228 (19%), Positives = 70/228 (30%), Gaps = 61/228 (26%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G + + +D+GI H P RG P
Sbjct: 23 GSGVKVAVLDTGISTH-PDL------------NIRGGASFVPGE---------------- 53
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
S DG+GHG+H A A N + P A +
Sbjct: 54 ---------------PSTQDGNGHGTHVAGTIAALNNSIGVLGVA---------PSAELY 89
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV 333
K L G V+ + ++ A ++G+ + +LS+G SP AT + +
Sbjct: 90 AVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSR------ 143
Query: 334 KAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381
GV V A+GN G + + V A + + G G
Sbjct: 144 --GVLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAG 189
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 68.7 bits (166), Expect = 4e-13
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 563 KPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPA 622
+I APGS +++ W G+ ISGTSMA PH++G+AA + ++P S
Sbjct: 224 DIEISAPGSSVYSTWY----------NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNT 273
Query: 623 AIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVN 669
++S L +D A + G G
Sbjct: 274 QLRSNLQERAKSVDIKGGYGAA------------IGDDYASGFGFAR 308
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 64.5 bits (155), Expect = 1e-11
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 562 LKPDILAPGSLIWAAWSPNGTDEANFVGE--GFALISGTSMAAPHIAGIAALVKQKHPY- 618
+KPD++APG+ I +A S D + + +A + GTSMA P +AG A +++
Sbjct: 216 IKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKN 275
Query: 619 ----WSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAAL 674
P+ +K+AL+ + + G G V +L
Sbjct: 276 RGITPKPSLLKAALIAGAADIGLGYP-------------------NGNQGWGRVTLDKSL 316
Query: 675 D 675
+
Sbjct: 317 N 317
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.6 bits (145), Expect = 2e-10
Identities = 16/103 (15%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 573 IWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTT 632
+++ S ++ G GTS AAP AG+ L+ + +P + ++ + +
Sbjct: 238 TYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 297
Query: 633 TKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
L++ + + YG G ++ ++
Sbjct: 298 VGLEKNADGDWRDSAMGKKY-------SHRYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (86), Expect = 0.004
Identities = 28/210 (13%), Positives = 46/210 (21%), Gaps = 55/210 (26%)
Query: 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRS 200
+W G +V VD G+ + +
Sbjct: 36 LDLWYNNIT----GAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRL---- 87
Query: 201 FCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEF 260
D HG+ A +
Sbjct: 88 --------------------------------SDDYHGTRCA--------GEIAAKKGNN 107
Query: 261 GRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTT 320
G+ A+I+ + L D A++ + D DI S S GP +
Sbjct: 108 FCGVGVGYNAKISGIRILS--GDITTEDEAASLIYGL-DVNDIYSCSWGPADDGRHLQGP 164
Query: 321 FLNPFDVTLLAAVKA----GVFVAQAAGNG 346
+ + G A+GNG
Sbjct: 165 SDLVKKALVKGVTEGRDSKGAIYVFASGNG 194
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.2 bits (144), Expect = 3e-10
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 596 SGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKL 655
+GTS +AP AGI AL + + + ++ ++ T+ +
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVG------- 309
Query: 656 VTATPFDYGSGHVNPRAALD 675
YG G ++ A +
Sbjct: 310 -RKVSHSYGYGLLDAGAMVA 328
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 55.5 bits (132), Expect = 7e-09
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 574 WAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTT 633
+ P + ++G ISGTSMA PH+AG+AA + + +A + + T
Sbjct: 199 LDIFGPGTDILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTAN 257
Query: 634 KLD 636
K D
Sbjct: 258 KGD 260
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 53.0 bits (126), Expect = 4e-08
Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 23/99 (23%)
Query: 577 WSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLD 636
+P + G +A +SGTSMA+PH+AG+AAL+ + + I+ A+ T K+
Sbjct: 204 VAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIRQAIEQTADKIS 261
Query: 637 RASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675
T + G +N A+
Sbjct: 262 ---------------------GTGTYFKYGRINSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 48.4 bits (114), Expect = 1e-06
Identities = 47/230 (20%), Positives = 69/230 (30%), Gaps = 60/230 (26%)
Query: 143 VWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFC 202
W G I +D+G+ HP
Sbjct: 23 AWDVTKG----SSGQEIAVIDTGVDYTHPDL----------------------------- 49
Query: 203 NGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGR 262
+GK+I ++ + P+D + HG+H A I +
Sbjct: 50 DGKVIKG------------YDFVDNDYDPMDLNNHGTHVAGI--------AAAETNNATG 89
Query: 263 ASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFL 322
+GMAP RI +AL R G ++D+ AI A G ++++L
Sbjct: 90 IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINL-------SLGCDCHTT 142
Query: 323 NPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRY 372
+ A K V VA A NG SY I A DR
Sbjct: 143 TLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA 192
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 591 GFALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSET 650
+A +SGTSMA PH+AG+A L+ + S + I++A+ T K+
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKIS-------------- 260
Query: 651 EAMKLVTATPFDYGSGHVNPRAALD 675
T + G VN A+
Sbjct: 261 -------GTGTYWAKGRVNAYKAVQ 278
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 31/214 (14%), Positives = 57/214 (26%), Gaps = 4/214 (1%)
Query: 154 GEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFA 213
G I VD+G+ +HP + V + +
Sbjct: 29 GSGAKIAIVDTGVQSNHPDLAGKVVGGWDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTG 88
Query: 214 EAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIA 273
A A +A AV LD G G+ TA +
Sbjct: 89 IAGTAPKASILAVRV---LDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQ 145
Query: 274 VYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAV 333
+ VA A + A + + ++ K++F +AA
Sbjct: 146 AVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAP 205
Query: 334 KAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAI 367
+ ++ T ++ +P + VA +
Sbjct: 206 GSSIYSTYPTSTYASLSGTSMA-TPHVAGVAGLL 238
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 48.1 bits (113), Expect = 3e-06
Identities = 17/141 (12%), Positives = 31/141 (21%), Gaps = 9/141 (6%)
Query: 221 AFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYR 280
A + + + + A A + +
Sbjct: 54 ASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSIVG---------SAGGAVQQLLFYMAD 104
Query: 281 LFGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVA 340
+ A +QAV D V + L D A G +
Sbjct: 105 QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFS 164
Query: 341 QAAGNGGPFPKTLVSYSPWIT 361
++G+ G + Y T
Sbjct: 165 VSSGDEGVYECNNRGYPDGST 185
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 38.0 bits (87), Expect = 0.003
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 574 WAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP----YWSPAAIKSALM 629
+ + GT + I GTS+A+P G+ A ++ + + + + +
Sbjct: 261 ISFDAAQGTGALIYNYGQLQQIGGTSLASPIFVGLWARLQSANSNSLGFPAASFYSAISS 320
Query: 630 TTTTKLD 636
T + D
Sbjct: 321 TPSLVHD 327
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 43.9 bits (102), Expect = 5e-05
Identities = 54/368 (14%), Positives = 87/368 (23%), Gaps = 63/368 (17%)
Query: 140 PTGVWPT--------GGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKC 191
PT P G D G+ I + G S + P+
Sbjct: 3 PTAYTPLDVAQAYQFPEGLD--GQGQCIAIIALGGGYDETSLAQYFASLGVSAPQV---- 56
Query: 192 EVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGI 251
+ DG + G +G
Sbjct: 57 --------------------------------------VSVSVDGATNQPTGDPNGPDG- 77
Query: 252 PVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGVDILSLSVGPN 311
+ A +AP A+IAVY A + + I+S+S G
Sbjct: 78 ---EVELDIEVAGALAPGAKIAVYFAPN--TDAGFLNAITTAVHDPTHKPSIVSISWGGP 132
Query: 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRR 371
+ + L A GV V AAG+ G A+
Sbjct: 133 EDS--WAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLAC 190
Query: 372 YKNHLNLGNGKIL---AGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLN 428
L G+I + + + + + SA+
Sbjct: 191 GGTRLVASAGRIERETVWNDGPDGGSTGGGVSRIFPLPSWQERANVPPSANPGAGSGRGV 250
Query: 429 KNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIP 488
++ GY T I S A A + + P +P +P
Sbjct: 251 PDVAGNADPATGYEVVIDGETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLP 310
Query: 489 GILITDVT 496
+ D+T
Sbjct: 311 PEVFHDIT 318
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} Length = 71 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Score = 34.9 bits (80), Expect = 0.003
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 94 HLINGFAVHITPDQAEILQRAPGVKSVERDWKVR 127
+N A + + L++ P V VE D
Sbjct: 36 KYVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 817 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.44 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.38 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.92 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 91.59 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 89.38 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=4.5e-53 Score=497.52 Aligned_cols=336 Identities=24% Similarity=0.286 Sum_probs=249.3
Q ss_pred ceEEEEeccccceEEEEcCHHHH----HHH--HcCCCceEEEccceeccccC----CCCcc-------------------
Q 003469 86 YKKLYSYKHLINGFAVHITPDQA----EIL--QRAPGVKSVERDWKVRRLTT----HTPEF------------------- 136 (817)
Q Consensus 86 ~~~~~~y~~~~ng~sv~~~~~~~----~~L--~~~p~V~~V~~~~~~~~~~~----~s~~~------------------- 136 (817)
.+++.++. .++.+.++++...+ +.+ ..+|+|++|||+...++... ..+..
T Consensus 53 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (671)
T d1r6va_ 53 GKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEEL 131 (671)
T ss_dssp CEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTT
T ss_pred CEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCccc
Confidence 34455544 56777888775433 233 25799999999865543211 00000
Q ss_pred ---------cCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCcee
Q 003469 137 ---------LGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKII 207 (817)
Q Consensus 137 ---------~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~ 207 (817)
++.+...|. .++|+||+|||||||||++||+|.++ ++
T Consensus 132 ~~~~w~l~~i~~~~a~~~-----~~tG~gV~VaViDtGvd~~Hpdl~~~-----------------------------~~ 177 (671)
T d1r6va_ 132 SNELWGLEAIGVTQQLWE-----EASGTNIIVAVVDTGVDGTHPDLEGQ-----------------------------VI 177 (671)
T ss_dssp GGGCHHHHHTTCCHHHHH-----HCSCTTCEEEEEESCCBTTSGGGTTT-----------------------------BC
T ss_pred cccCcChhhcCccHHHHh-----cCCCCCCEEEEEcCCcCCCChhhcCC-----------------------------cc
Confidence 111111233 37999999999999999999999976 22
Q ss_pred eeeehhHHHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecC------
Q 003469 208 GAQHFAEAAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRL------ 281 (817)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~------ 281 (817)
.++++..+. ......++.|++||||||||||||+.+. .++.||||+|+|+++|++++.
T Consensus 178 ~~~~~~~~~-------~~~~~~~~~d~~gHGT~VAGiiaa~~~~---------~g~~GvAp~a~l~~~rv~~~~~~~~~~ 241 (671)
T d1r6va_ 178 AGYRPAFDE-------ELPAGTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGN 241 (671)
T ss_dssp CEEEGGGTE-------EECTTCBCCTTCSHHHHHHHHHHCCCSS---------SSCCCSCTTSEEEEEESBCCHHHHCTT
T ss_pred cCccccccC-------CCCCCCcCcccCCCCccccceeeeeccc---------cceeeecCcceEEEEEecccccccCCC
Confidence 223332110 0011234567889999999999997531 246899999999999999642
Q ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC-CCccCCCCcE
Q 003469 282 FGGFVADVVAAIDQAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP-KTLVSYSPWI 360 (817)
Q Consensus 282 ~~~~~~di~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~~~v 360 (817)
+....+.+++||+||+++|++|||||||+.. ....+..+++.+.++|+++|+||||++.+. ...|+..|++
T Consensus 242 g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~--------~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~v 313 (671)
T d1r6va_ 242 GYVGDDYVAAGIIWATDHGAKVMNHSWGGWG--------YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGV 313 (671)
T ss_dssp SBCCHHHHHHHHHHHHHTTCSEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTC
T ss_pred CcccHHHHHHHHHHHHhCCCcEEeccccccc--------CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCce
Confidence 2345677999999999999999999999742 345788899999999999999999998764 4567889999
Q ss_pred EEEeeeecCcceeeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEe
Q 003469 361 TTVAAAIDDRRYKNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCG 440 (817)
Q Consensus 361 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~ 440 (817)
|+|||++....
T Consensus 314 i~Vga~~~~~~--------------------------------------------------------------------- 324 (671)
T d1r6va_ 314 IQVAALDYYGG--------------------------------------------------------------------- 324 (671)
T ss_dssp EEEEEEEEETT---------------------------------------------------------------------
T ss_pred EEEEEecCCCC---------------------------------------------------------------------
Confidence 99999642110
Q ss_pred cccccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEee
Q 003469 441 YSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSF 520 (817)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~ 520 (817)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCC--------CCCccCCce
Q 003469 521 KGTGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTD--------EANFVGEGF 592 (817)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y 592 (817)
...++.||+|||.. ||+|||++|+|+++..... .....++.|
T Consensus 325 -----------------~~~~a~fS~~g~~~-------------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y 374 (671)
T d1r6va_ 325 -----------------TFRVAGFSSRSDGV-------------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTY 374 (671)
T ss_dssp -----------------EEEECSSSCCCTTE-------------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCE
T ss_pred -----------------cceeeeccCCCCCc-------------eEEecCCCeEeecCCCCccccccccccccccCCCee
Confidence 01678999999976 9999999999998653321 112246789
Q ss_pred EeecCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCccc
Q 003469 593 ALISGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRA 672 (817)
Q Consensus 593 ~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~ 672 (817)
..++|||||||||||++|||+|++|+|++.|||++|++||++++..+ .+..||||+||+.+
T Consensus 375 ~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g-------------------~~~~~G~G~vna~~ 435 (671)
T d1r6va_ 375 DYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG-------------------WDHDTGYGLVKLDA 435 (671)
T ss_dssp EEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS-------------------CBTTTBTCBCCHHH
T ss_pred eeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC-------------------CCCCcccChhCHHH
Confidence 99999999999999999999999999999999999999999876543 23589999999999
Q ss_pred ccCCCe
Q 003469 673 ALDPGL 678 (817)
Q Consensus 673 Al~~~l 678 (817)
||+..+
T Consensus 436 Av~~~~ 441 (671)
T d1r6va_ 436 ALQGPL 441 (671)
T ss_dssp HHHCCC
T ss_pred HhhCcC
Confidence 997544
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=2.6e-49 Score=445.80 Aligned_cols=372 Identities=22% Similarity=0.281 Sum_probs=232.6
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
.+|+||+|||||||||++||+|.++ ++.+++|.. ..+...+
T Consensus 19 ~~G~gv~VaviDtGid~~Hp~~~~~-----------------------------~~~~~~~~~----------~~~~~~~ 59 (435)
T d1v6ca_ 19 SQAGNRTICIIDSGYDRSHNDLNAN-----------------------------NVTGTNNSG----------TGNWYQP 59 (435)
T ss_dssp TTGGGCEEEEEESCCCTTSTTTTTS-----------------------------EEEECCCTT----------SCCTTCC
T ss_pred cCCCCcEEEEEcCCCCCCChhhccC-----------------------------eeeeeccCC----------CCCCCCC
Confidence 4899999999999999999999875 233333321 1123457
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccC--CCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cCCcEEEecC
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAP--RARIAVYKALYRLFGGFVADVVAAIDQAVH-DGVDILSLSV 308 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP--~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g~dVIn~Sl 308 (817)
.|++||||||||||||+... ..+.|||| +++|+.+|++.....++..++++||+++++ +|++|||+||
T Consensus 60 ~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~ 130 (435)
T d1v6ca_ 60 GNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSL 130 (435)
T ss_dssp CSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECC
T ss_pred CCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEeccc
Confidence 78999999999999997532 14689999 899999999988666777789999999996 5999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCCcEEEeee
Q 003469 309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNGKILAGIG 388 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~ 388 (817)
|.... ...+..+++++.++|+++|+||||+|....++++..+++|+|||++.+.....+...+....+...+
T Consensus 131 g~~~~--------~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG 202 (435)
T d1v6ca_ 131 GGSGS--------TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPG 202 (435)
T ss_dssp CBSCC--------BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEEC
T ss_pred CCCCC--------CHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecc
Confidence 97532 3466788899999999999999999999888999999999999998765433222222111111100
Q ss_pred --cC-CCCCCCceEEEEEc-ccccccccc---cccCCCCCCCc-------------------cccccccccccEEEEecc
Q 003469 389 --LS-PATHGNRTFTLVAA-NDVLLDSSV---MKYSASDCQRP-------------------EVLNKNLVEGNILLCGYS 442 (817)
Q Consensus 389 --~~-~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~c~~~-------------------~~~~~~~~~gki~~~~~~ 442 (817)
+. ........+..... ......... .......|... ..+......+++.++.+.
T Consensus 203 ~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (435)
T d1v6ca_ 203 EAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERV 282 (435)
T ss_dssp SSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECC
T ss_pred cceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeecc
Confidence 00 00000000000000 000000000 00000011000 011112233344433332
Q ss_pred cccccCcchHHHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeee
Q 003469 443 FNFVTGTASIKKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKG 522 (817)
Q Consensus 443 ~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 522 (817)
... ............+...++.+++.+
T Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 309 (435)
T d1v6ca_ 283 GNQ-GSSYPEINSTKACKTAGAKGIIVY---------------------------------------------------- 309 (435)
T ss_dssp SCS-SSSCTHHHHHHHHHHTTCSEEEEE----------------------------------------------------
T ss_pred CCc-cccceeeeeceeecccCCcceEEe----------------------------------------------------
Confidence 110 011112222223333333333322
Q ss_pred eeEecCCCcccccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCC-----C--CCCCCccCCceEee
Q 003469 523 TGTIGDGLMPILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPN-----G--TDEANFVGEGFALI 595 (817)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~-----~--~~~~~~~~~~y~~~ 595 (817)
+++.+|.... ......||||.+||..|.++.... . .......++.|..|
T Consensus 310 ---------------------~~~~~~~~~~---~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~ 365 (435)
T d1v6ca_ 310 ---------------------SNSALPGLQN---PFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYY 365 (435)
T ss_dssp ---------------------CCSSSCSCCC---CEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEE
T ss_pred ---------------------ccCCCCCcCC---ccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEE
Confidence 2333332211 011368999999998886543110 0 00011234689999
Q ss_pred cCccchhHHHHHHHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 596 SGTSMAAPHIAGIAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 596 sGTSmAaP~VAG~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
||||||||||||++|||||+||+|+++|||++||+||+++.. ++++++||+|+||+.+|++
T Consensus 366 sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-------------------~~~~~~~G~G~vn~~~A~~ 426 (435)
T d1v6ca_ 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV-------------------AGRDNQTGYGMINAVAAKA 426 (435)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-------------------SSCBTTTBTCBCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-------------------CCCCCCcccceecHHHHHH
Confidence 999999999999999999999999999999999999998743 2455799999999999953
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=6.1e-49 Score=415.53 Aligned_cols=264 Identities=29% Similarity=0.413 Sum_probs=213.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhH
Q 003469 135 EFLGLPTGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAE 214 (817)
Q Consensus 135 ~~~g~~~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~ 214 (817)
+.++++ .+|.. +++|+||+|||||||||++||+|.++ ++..++|..
T Consensus 16 ~~i~~~-~aw~~----~~~G~gv~VaviDsGi~~~h~~l~~~-----------------------------~~~~~~~~~ 61 (280)
T d1dbia_ 16 QNTYTD-YAWDV----TKGSSGQEIAVIDTGVDYTHPDLDGK-----------------------------VIKGYDFVD 61 (280)
T ss_dssp GGGTHH-HHTTT----CCCCTTCEEEEEESCCCTTSTTTTTT-----------------------------EEEEEETTT
T ss_pred hhCCHH-HHHhc----cCCCCCeEEEEEccCcCCCChhhcCC-----------------------------eeecccccC
Confidence 334433 68887 68999999999999999999999964 455555543
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHH
Q 003469 215 AAIAARAFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAID 294 (817)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~ 294 (817)
. ...+.|.++|||||||+|+|.... ...+.||||+|+|+.+|+++..+.+..+++++||+
T Consensus 62 ~------------~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~ 121 (280)
T d1dbia_ 62 N------------DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAII 121 (280)
T ss_dssp T------------BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHH
T ss_pred C------------CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHH
Confidence 1 234668899999999999997532 23478999999999999998877788999999999
Q ss_pred HHHHcCCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceee
Q 003469 295 QAVHDGVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKN 374 (817)
Q Consensus 295 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~ 374 (817)
|++++|++|||||||... ..+....++..+.++|+++|+||||+|......++..+++|+|||.+.
T Consensus 122 ~a~~~g~~iin~S~g~~~--------~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------ 187 (280)
T d1dbia_ 122 YAADSGAEVINLSLGCDC--------HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------ 187 (280)
T ss_dssp HHHHTTCSEEEECCSSCC--------CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT------
T ss_pred HHHHcCCcEeeccccccc--------cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC------
Confidence 999999999999999743 234566788899999999999999999887778888999999998531
Q ss_pred EEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHH
Q 003469 375 HLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKK 454 (817)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~ 454 (817)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccc
Q 003469 455 VSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPIL 534 (817)
Q Consensus 455 ~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (817)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHH
Q 003469 535 HKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQ 614 (817)
Q Consensus 535 ~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 614 (817)
.+.++.||++||.. |++|||.+|++.. .+..|..++|||||||+|||++|||+|
T Consensus 188 ---~~~~a~~S~~g~~~-------------d~~apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~All~~ 241 (280)
T d1dbia_ 188 ---YDRLASFSNYGTWV-------------DVVAPGVDIVSTI----------TGNRYAYMSGTSMASPHVAGLAALLAS 241 (280)
T ss_dssp ---TSCBCTTBCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHH
T ss_pred ---CCCcCCcCCCCCcc-------------cccCCccceeccc----------cCcceeccCCccccchHHHHHHHHHhC
Confidence 12678999999876 8999999999987 456899999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 615 KHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 615 ~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
. .+++.+||++|++||+++... ...||+|+||+.+||+
T Consensus 242 ~--~~t~~~v~~~L~~tA~~~~~~---------------------~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 242 Q--GRNNIEIRQAIEQTADKISGT---------------------GTYFKYGRINSYNAVT 279 (280)
T ss_dssp T--TCCHHHHHHHHHHTSBCCTTB---------------------TTTBSSEECCHHHHHT
T ss_pred C--CcCHHHHHHHHHHhCcCCCCC---------------------CCcCCCCeEcHHHHcC
Confidence 5 458999999999999886432 2479999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=2.2e-47 Score=404.10 Aligned_cols=257 Identities=30% Similarity=0.471 Sum_probs=218.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. .+|+||+|||||||||++||+|.++ ++..++|.++
T Consensus 22 ~aw~~-----~tG~Gv~VaViDsGi~~~H~~~~~~-----------------------------~~~~~~~~~~------ 61 (279)
T d1thma_ 22 QAWDI-----AEGSGAKIAIVDTGVQSNHPDLAGK-----------------------------VVGGWDFVDN------ 61 (279)
T ss_dssp HHHTT-----CCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEETTTT------
T ss_pred HHHhc-----cCCCCcEEEEEcCCCCCCChhhcCC-----------------------------eecccccccc------
Confidence 67876 3899999999999999999999964 5556666432
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
+..+.|..+|||||||+|++....+ ..+.||||+|+|+.+|++...+.+..+++++||+++.+.++
T Consensus 62 ------~~~~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~ 127 (279)
T d1thma_ 62 ------DSTPQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGA 127 (279)
T ss_dssp ------BSCCCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTC
T ss_pred ------CcccccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCC
Confidence 2456788999999999999975322 24689999999999999988777888999999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
+|||||||... ....+..++..+.++|+++|+|+||+|......+...+++|+|||++.
T Consensus 128 ~i~n~S~G~~~--------~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~------------- 186 (279)
T d1thma_ 128 KVISLSLGGTV--------GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp SEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred ceeccccCccc--------cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-------------
Confidence 99999999743 334677888899999999999999999988888888999999998531
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
.+.+
T Consensus 187 ----------------------------------------------------------------------------~~~~ 190 (279)
T d1thma_ 187 ----------------------------------------------------------------------------NDNK 190 (279)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1267
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++|++. ||+|||.+|+++. .++.|..++|||||||||||++|||+|.+| ++
T Consensus 191 ~~~S~~G~~~-------------di~Apg~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~ 245 (279)
T d1thma_ 191 SSFSTYGSWV-------------DVAAPGSSIYSTY----------PTSTYASLSGTSMATPHVAGVAGLLASQGR--SA 245 (279)
T ss_dssp CTTCCCCTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHTTTC--CH
T ss_pred ccccCCCceE-------------EEeeeeecccccc----------CcccccccCCcchhhHHHHHHHHHHhcCCc--CH
Confidence 8999999986 9999999999998 456899999999999999999999999766 79
Q ss_pred HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
.+||++|++||+++.. ....||+|+||+.+||+
T Consensus 246 ~~i~~~L~~tA~~~~g---------------------~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 246 SNIRAAIENTADKISG---------------------TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp HHHHHHHHHTCBCCTT---------------------BTTTBSSEECCHHHHHH
T ss_pred HHHHHHHHhhCccCCC---------------------CCCcceeeeEcHHHhhC
Confidence 9999999999988642 22479999999999975
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.2e-47 Score=404.90 Aligned_cols=256 Identities=30% Similarity=0.484 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|+. ..+++|..+
T Consensus 15 ~~~~~----g~tG~gv~VaViDtGv~~~Hp~l~~-------------------------------~~~~~~~~~------ 53 (274)
T d1r0re_ 15 KVQAQ----GFKGANVKVAVLDTGIQASHPDLNV-------------------------------VGGASFVAG------ 53 (274)
T ss_dssp HHHHH----TCSCTTCEEEEEESCCCTTCTTCCE-------------------------------EEEEECSTT------
T ss_pred HHHHc----CCCCCCeEEEEECCCCCCCChhhcc-------------------------------cCCccccCC------
Confidence 45666 7999999999999999999999963 233344321
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+|+++..+.+..+++++|++++.++++
T Consensus 54 ------~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~ 118 (274)
T d1r0re_ 54 ------EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGM 118 (274)
T ss_dssp ------CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred ------CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCC
Confidence 234557889999999999987532 13689999999999999988766788999999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC----CccCCCCcEEEEeeeecCcceeeEEE
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK----TLVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~----~~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
+|||+|||.... .........++.++++++|+||||+|.... ..++..+++|+|||++.
T Consensus 119 ~i~n~S~~~~~~--------~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 181 (274)
T d1r0re_ 119 DVINMSLGGASG--------STAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp SEEEECEEBSSC--------CHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred ceeccccccccc--------hhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------
Confidence 999999997432 345667778899999999999999986532 34567788999988531
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 617 (817)
.+.++.||++||.+ ||+|||++|+++. ..+.|..++|||||||+|||++|||+|++|
T Consensus 182 ~~~~~~~s~~g~~~-------------di~APG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~~All~~~~p 238 (274)
T d1r0re_ 182 NSNRASFSSVGAEL-------------EVMAPGAGVYSTY----------PTNTYATLNGTSMASPHVAGAAALILSKHP 238 (274)
T ss_dssp TSCBCTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHST
T ss_pred CCCcccccCCCCCE-------------EEEecCCCccccc----------CCCCeEeecCCchhHHHHHHHHHHHHHHCC
Confidence 12678899999855 9999999999997 456899999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
+|++++||.+|++||+++.. .+.||+|+||+.+|++
T Consensus 239 ~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 239 NLSASQVRNRLSSTATYLGS----------------------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp TCCHHHHHHHHHHTCBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred CCCHHHHHHHHHhhCccCCC----------------------CCceEcCeecHHHhcC
Confidence 99999999999999987632 2479999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.1e-47 Score=404.68 Aligned_cols=258 Identities=32% Similarity=0.481 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|+.. ..++|...
T Consensus 15 ~aw~~----g~tG~Gv~IaviDtGv~~~Hp~l~~~-------------------------------~~~~~~~~------ 53 (281)
T d1to2e_ 15 ALHSQ----GYTGSNVKVAVIDSGIDSSHPDLKVA-------------------------------GGASMVPS------ 53 (281)
T ss_dssp HHHHH----TCSCTTCEEEEEESCCCTTCTTCCEE-------------------------------EEEECCTT------
T ss_pred HHHHC----CCCCCCeEEEEECCCCCCCChhhhhc-------------------------------CCccccCC------
Confidence 57765 79999999999999999999999743 12222111
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
+.....+.++|||||||||+|.... ....||||+|+|+.+|++..++.+..+++++||+|+++.++
T Consensus 54 -----~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~ 119 (281)
T d1to2e_ 54 -----ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNM 119 (281)
T ss_dssp -----CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTC
T ss_pred -----CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccc
Confidence 1112234679999999999997432 13589999999999999988766788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCC----CCccCCCCcEEEEeeeecCcceeeEEE
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFP----KTLVSYSPWITTVAAAIDDRRYKNHLN 377 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~~~vitVgA~~~~~~~~~~~~ 377 (817)
+|||+|||... ....+..+++.+.++|+++|+||||+|... ...++..+++|+|||++.
T Consensus 120 ~v~n~S~g~~~--------~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 182 (281)
T d1to2e_ 120 DVINMSLGGPS--------GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp SEEEECEEBSC--------CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred cccccccCCCc--------chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC---------
Confidence 99999999742 345688899999999999999999998753 234567888999988531
Q ss_pred eCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHH
Q 003469 378 LGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSE 457 (817)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~ 457 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCC
Q 003469 458 TAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKS 537 (817)
Q Consensus 458 ~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (817)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCC
Q 003469 538 APQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHP 617 (817)
Q Consensus 538 ~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p 617 (817)
.+.++.||++||.. |++|||.+|.++. .++.|..++|||||||+|||++|||+|++|
T Consensus 183 ~~~~~~~S~~G~~~-------------d~~apG~~i~s~~----------~~~~~~~~~GTS~Aap~vaG~~All~~~~p 239 (281)
T d1to2e_ 183 SNQRASFSSVGPEL-------------DVMAPGVSIQSTL----------PGNKYGAYNGTSMASPHVAGAAALILSKHP 239 (281)
T ss_dssp TSCBCTTCCCSTTC-------------CEEEECSSEEEEE----------TTTEEEEECBHHHHHHHHHHHHHHHHHHST
T ss_pred CCCCCcccCCCCCc-------------cccCCCCCceeec----------CCCeeEcccCcchhHHHHHHHHHHHHHHCC
Confidence 12678899999976 8999999999997 456899999999999999999999999999
Q ss_pred CCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469 618 YWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676 (817)
Q Consensus 618 ~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 676 (817)
+|++++||++|++||+++.. ...||+|+||+.+|++.
T Consensus 240 ~lt~~~i~~~L~~tA~~~~~----------------------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 240 NWTNTQVRSSLENTTTKLGD----------------------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp TCCHHHHHHHHHTTCBCCSC----------------------HHHHTTCBCCHHHHTSS
T ss_pred CCCHHHHHHHHHhhCccCCC----------------------CCCcccCcccHHHHHhh
Confidence 99999999999999998642 13689999999999984
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=5.5e-47 Score=398.66 Aligned_cols=255 Identities=34% Similarity=0.496 Sum_probs=215.1
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+||||||||| +||+|... ..++|..
T Consensus 15 ~aw~~----g~tG~gv~V~ViDsGv~-~h~~l~~~-------------------------------~~~~~~~------- 51 (269)
T d1gcia_ 15 AAHNR----GLTGSGVKVAVLDTGIS-THPDLNIR-------------------------------GGASFVP------- 51 (269)
T ss_dssp HHHHT----TCSCTTCEEEEEESCCC-CCTTCCEE-------------------------------EEEECST-------
T ss_pred HHHhC----CCCCCCeEEEEECCCCC-CCcccCcc-------------------------------ccccccC-------
Confidence 57766 79999999999999998 89999743 2223322
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
....+.|.++|||||||||++.... ....|+||+|+|+.+|++...+.+...++.+|++++...++
T Consensus 52 -----~~~~~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~ 117 (269)
T d1gcia_ 52 -----GEPSTQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGM 117 (269)
T ss_dssp -----TCCSCSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred -----CCCCccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhccc
Confidence 1234567889999999999987532 24579999999999999988777788899999999999999
Q ss_pred cEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCccCCCCcEEEEeeeecCcceeeEEEeCCC
Q 003469 302 DILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLVSYSPWITTVAAAIDDRRYKNHLNLGNG 381 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~~~vitVgA~~~~~~~~~~~~~~~~ 381 (817)
++||+|||.... ......++..+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 118 ~~in~s~g~~~~--------~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 177 (269)
T d1gcia_ 118 HVANLSLGSPSP--------SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------ 177 (269)
T ss_dssp SEEEECCCBSSC--------CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------------
T ss_pred cccccccccccc--------cchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC------------
Confidence 999999997432 345667888899999999999999998888888889999999985311
Q ss_pred cEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHh
Q 003469 382 KILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKS 461 (817)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~ 461 (817)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcc
Q 003469 462 LGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQV 541 (817)
Q Consensus 462 ~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (817)
+.+
T Consensus 178 -----------------------------------------------------------------------------~~~ 180 (269)
T d1gcia_ 178 -----------------------------------------------------------------------------NNR 180 (269)
T ss_dssp -----------------------------------------------------------------------------SCB
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 267
Q ss_pred ccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCH
Q 003469 542 ALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSP 621 (817)
Q Consensus 542 a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~ 621 (817)
+.||++||.. ||+|||.++.++. .+..|..++|||||||+|||++|||+|++|+|++
T Consensus 181 ~~~S~~G~~~-------------di~Apg~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~ 237 (269)
T d1gcia_ 181 ASFSQYGAGL-------------DIVAPGVNVQSTY----------PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSN 237 (269)
T ss_dssp CTTCCCSTTE-------------EEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHHCTTCCH
T ss_pred ccccCCCCCc-------------eEEEeeecceecc----------CCCceEecCCcchHHHHHHHHHHHHHHHCCCCCH
Confidence 8899999876 9999999999987 4568999999999999999999999999999999
Q ss_pred HHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 622 AAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 622 ~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
++||.+|++||+++.. ...||+|+||+++|++
T Consensus 238 ~~i~~~L~~tA~~~g~----------------------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 238 VQIRNHLKNTATSLGS----------------------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp HHHHHHHHHTSBCCSC----------------------HHHHTTCBCCHHHHTC
T ss_pred HHHHHHHHhhCccCCC----------------------CCCcccCeEcHHHhcC
Confidence 9999999999988642 1368999999999985
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=5.7e-43 Score=375.78 Aligned_cols=287 Identities=26% Similarity=0.371 Sum_probs=216.3
Q ss_pred CCCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhc
Q 003469 141 TGVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAAR 220 (817)
Q Consensus 141 ~~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~ 220 (817)
+.+|.. +++|+||+|||||||||++||+|.++ +...++|....
T Consensus 16 ~~aw~~----~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------------~~~~~~~~~~~---- 58 (309)
T d2ixta1 16 NDTLTS----TTGGSGINIAVLDTGVNTSHPDLVNN-----------------------------VEQCKDFTGAT---- 58 (309)
T ss_dssp CTTCCC----CCCCTTCEEEEEESCCCTTCTTTTTT-----------------------------EEEEEESSSSS----
T ss_pred hhhhcc----CCCCCCeEEEEEccCCCCCChhHhcc-----------------------------ccccccccCCC----
Confidence 367876 68999999999999999999999975 33444443211
Q ss_pred cCCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-
Q 003469 221 AFNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD- 299 (817)
Q Consensus 221 ~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~- 299 (817)
........|.+||||||||||+|+... +...+.||||+|+|+.+|++...+.+..++++.+++++++.
T Consensus 59 ----~~~~~~~~d~~gHGT~VAgiiaa~~~~-------~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 127 (309)
T d2ixta1 59 ----TPINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQA 127 (309)
T ss_dssp ----SCEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHH
T ss_pred ----CCCCCCccccccccccccccccccccc-------cchhhhhhhhhccceeeeeecCCCCccccccccccccccccc
Confidence 111234557889999999999986432 12346899999999999999887778888999999998875
Q ss_pred ----CCcEEEecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC--CccCCCCcEEEEeeeecCccee
Q 003469 300 ----GVDILSLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK--TLVSYSPWITTVAAAIDDRRYK 373 (817)
Q Consensus 300 ----g~dVIn~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~~~vitVgA~~~~~~~~ 373 (817)
...|+|+|++... .......++..+.++|+++|+||||++.... ..++..+++++|++........
T Consensus 128 ~~~~~~~v~~~s~~~~~--------~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~ 199 (309)
T d2ixta1 128 TATGTKTIISMSLGSSA--------NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNG 199 (309)
T ss_dssp HHHTCCEEEEECCCBSS--------CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETT
T ss_pred ccccccccccccccccc--------cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhccccccccccccccc
Confidence 3468999998743 2345677888899999999999999987654 3455678888888753211000
Q ss_pred eEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHH
Q 003469 374 NHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIK 453 (817)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~ 453 (817)
..
T Consensus 200 ~~------------------------------------------------------------------------------ 201 (309)
T d2ixta1 200 TY------------------------------------------------------------------------------ 201 (309)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCccc
Q 003469 454 KVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPI 533 (817)
Q Consensus 454 ~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (817)
T Consensus 202 -------------------------------------------------------------------------------- 201 (309)
T d2ixta1 202 -------------------------------------------------------------------------------- 201 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHH
Q 003469 534 LHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVK 613 (817)
Q Consensus 534 ~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 613 (817)
..........++++|+.... ..||||+|||.+|+++. .+..|..++|||||||+|||++|||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~-------~~~vdi~apG~~~~s~~----------~~~~~~~~sGTS~AaP~VaG~~Ali~ 264 (309)
T d2ixta1 202 RVADYSSRGYISTAGDYVIQ-------EGDIEISAPGSSVYSTW----------YNGGYNTISGTSMATPHVSGLAAKIW 264 (309)
T ss_dssp EECTTSCCCCTTTTTSSSCC-------TTCCCEEEECSSEEEEC----------TTSSEEEECSHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccC-------CCcceeecCCCceeeec----------CCCcceeecCccchhHHHHHHHHHHH
Confidence 00001134556777777653 68999999999999997 45689999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCc
Q 003469 614 QKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNP 670 (817)
Q Consensus 614 q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~ 670 (817)
|++|+|+++|||++|++||++++..+.. ......++.+|+|++|+
T Consensus 265 ~~~p~lt~~~v~~~L~~tA~~~~~~~~~------------g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 265 AENPSLSNTQLRSNLQERAKSVDIKGGY------------GAAIGDDYASGFGFARV 309 (309)
T ss_dssp HHSTTCCHHHHHHHHHHHHHTSCCCBST------------TCCSSSBTTTBTCBCCC
T ss_pred HHCCCCCHHHHHHHHHhhCccCCCCCCc------------CCccCCCcccCCCEecC
Confidence 9999999999999999999988654321 12344567889999875
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.3e-42 Score=367.03 Aligned_cols=224 Identities=29% Similarity=0.429 Sum_probs=185.7
Q ss_pred CCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCCC
Q 003469 152 RAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFASP 231 (817)
Q Consensus 152 ~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (817)
.+|+||+|||||||||++||+|.++ +.....+ +..+
T Consensus 28 ~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------------~~~~~~~---------------~~~~ 63 (279)
T d2pwaa1 28 SAGQGSCVYVIDTGIEASHPEFEGR-----------------------------AQMVKTY---------------YYSS 63 (279)
T ss_dssp TTTTTEEEEEEESCCCTTCGGGTTC-----------------------------EEEEEES---------------SSCS
T ss_pred CCCCCeEEEEECcCCCCCChhhcCC-----------------------------ceeccCC---------------CCCc
Confidence 6999999999999999999999975 1111111 1234
Q ss_pred CCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcC-------CcEE
Q 003469 232 LDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDG-------VDIL 304 (817)
Q Consensus 232 ~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g-------~dVI 304 (817)
.|.+||||||||||+|+. .|+||+|+|+.+|++........+++..+++++.... ++|+
T Consensus 64 ~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 129 (279)
T d2pwaa1 64 RDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVA 129 (279)
T ss_dssp SCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEE
T ss_pred ccccCccccccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccce
Confidence 578899999999999963 5899999999999998876778888999999988753 4599
Q ss_pred EecCCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC-ccCCCCcEEEEeeeecCcceeeEEEeCCCcE
Q 003469 305 SLSVGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT-LVSYSPWITTVAAAIDDRRYKNHLNLGNGKI 383 (817)
Q Consensus 305 n~SlG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~~~vitVgA~~~~~~~~~~~~~~~~~~ 383 (817)
|+|||.. ..+.+..++.++.++|+++|+||||.+..... .+...|++|+|||++.
T Consensus 130 n~s~g~~---------~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~--------------- 185 (279)
T d2pwaa1 130 SLSLGGG---------YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR--------------- 185 (279)
T ss_dssp EECCCEE---------CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT---------------
T ss_pred eccCCCc---------cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee---------------
Confidence 9999963 34567888899999999999999999876443 4667889999998531
Q ss_pred EEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcC
Q 003469 384 LAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLG 463 (817)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~G 463 (817)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCcccc
Q 003469 464 AAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVAL 543 (817)
Q Consensus 464 a~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 543 (817)
.+.++.
T Consensus 186 --------------------------------------------------------------------------~g~~~~ 191 (279)
T d2pwaa1 186 --------------------------------------------------------------------------YDRRSS 191 (279)
T ss_dssp --------------------------------------------------------------------------TSBBCT
T ss_pred --------------------------------------------------------------------------cCCCcc
Confidence 126789
Q ss_pred ccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHHHHhCCCCCHHH
Q 003469 544 FSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALVKQKHPYWSPAA 623 (817)
Q Consensus 544 fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ls~~~ 623 (817)
||++||.. ||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|.+++++
T Consensus 192 ~S~~G~~~-------------dv~APG~~i~s~~----------~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~ 248 (279)
T d2pwaa1 192 FSNYGSVL-------------DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASA 248 (279)
T ss_dssp TCCBSTTC-------------CEEEECSSEEEEE----------TTTEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTH
T ss_pred ccCCCCcc-------------ccccccccccccc----------cCCcccCCCcchhHHHHHHHHHHHHHHhCCCChHHH
Confidence 99999976 9999999999998 456899999999999999999999999999999887
Q ss_pred HHHHHhcccccc
Q 003469 624 IKSALMTTTTKL 635 (817)
Q Consensus 624 ik~~L~~TA~~~ 635 (817)
+|. |++||++.
T Consensus 249 ~~~-ll~ta~~~ 259 (279)
T d2pwaa1 249 CRY-IADTANKG 259 (279)
T ss_dssp HHH-HHHHSEES
T ss_pred HHH-HHHhCcCC
Confidence 775 67788763
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.9e-40 Score=356.01 Aligned_cols=289 Identities=26% Similarity=0.345 Sum_probs=214.4
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
|+||+||+|||||||||++||+|.... .| +.++...+.+.. ..+
T Consensus 18 G~tG~Gv~VaIiDsGi~~~h~~~~~~~--------~~---------------~~~~~~~~~~~~-------------~~~ 61 (318)
T d1wmda2 18 GLYGQGQIVAVADTGLDTGRNDSSMHE--------AF---------------RGKITALYALGR-------------TNN 61 (318)
T ss_dssp CCSCTTCEEEEEESCCTTSCSSTTSCT--------TT---------------TTCEEEEEETTT-------------TTC
T ss_pred CccccCeEEEEEcCCcCCCCcccccCc--------cc---------------CCcEEeecCCCC-------------CCC
Confidence 799999999999999999999998641 01 123444444321 234
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCC--CCHHHHHHHHHHHHHcCCcEEEecC
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFG--GFVADVVAAIDQAVHDGVDILSLSV 308 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~--~~~~di~~ai~~a~~~g~dVIn~Sl 308 (817)
+.|..||||||||||+|+.. ...||||+|+|+.+|++...+. .....+..+++++...+++|+|+||
T Consensus 62 ~~d~~gHGT~vAgiiag~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 130 (318)
T d1wmda2 62 ANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSW 130 (318)
T ss_dssp CCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCCCccceeecccccc-----------ccchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeeccc
Confidence 56789999999999999743 2479999999999999987543 2344578899999999999999999
Q ss_pred CCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCCcc--CCCCcEEEEeeeecCcceeeEEEeCCCcEEEe
Q 003469 309 GPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLV--SYSPWITTVAAAIDDRRYKNHLNLGNGKILAG 386 (817)
Q Consensus 309 G~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~ 386 (817)
|...... .......+...+.++++++|+||||.|....... ...++++++.+........
T Consensus 131 g~~~~~~-----~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------- 192 (318)
T d1wmda2 131 GAAVNGA-----YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF------------- 192 (318)
T ss_dssp CBCCTTC-----CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-------------
T ss_pred ccccccc-----cchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-------------
Confidence 9764322 3345566667788999999999999998765443 3456677766542111000
Q ss_pred eecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchHHHHHHHHHhcCceE
Q 003469 387 IGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAG 466 (817)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~ 466 (817)
T Consensus 193 -------------------------------------------------------------------------------- 192 (318)
T d1wmda2 193 -------------------------------------------------------------------------------- 192 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcccccCCCCccccccC
Q 003469 467 FVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMPILHKSAPQVALFSA 546 (817)
Q Consensus 467 ~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fSS 546 (817)
.........+..||+
T Consensus 193 -----------------------------------------------------------------~~~~~~~~~~~~~s~ 207 (318)
T d1wmda2 193 -----------------------------------------------------------------GSYADNINHVAQFSS 207 (318)
T ss_dssp -----------------------------------------------------------------CGGGSCTTSBCTTSC
T ss_pred -----------------------------------------------------------------ccccccccccccccc
Confidence 000111226778999
Q ss_pred CCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCC--CccCCceEeecCccchhHHHHHHHHHHHHhCC-----CC
Q 003469 547 RGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEA--NFVGEGFALISGTSMAAPHIAGIAALVKQKHP-----YW 619 (817)
Q Consensus 547 ~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~--~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-----~l 619 (817)
+||.... ..|||++|||.+|+++......... ......|..++|||||||||||++|||+|++| .+
T Consensus 208 ~G~~~~~-------~~~~~~~a~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~ 280 (318)
T d1wmda2 208 RGPTKDG-------RIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITP 280 (318)
T ss_dssp CCCCTTS-------CCCCCEEEECSSEEEECCTTCCGGGSSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred cCCCcCC-------CcccceeecCceEEeccccccccCccccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCC
Confidence 9998764 7899999999999998765432211 11235788899999999999999999999744 57
Q ss_pred CHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 620 SPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 620 s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
++.+||++|++||+++... .++..||||+||+.+||+
T Consensus 281 ~~~~i~~~l~~tA~~~~~~-------------------~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 281 KPSLLKAALIAGAADIGLG-------------------YPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp CHHHHHHHHHHHCBCCSSC-------------------SSCTTTTTCBCCHHHHHT
T ss_pred CHHHHHHHHHhhCccCCCC-------------------CCCCCeeeceecHHHHhC
Confidence 8999999999999986532 345689999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-38 Score=346.25 Aligned_cols=287 Identities=20% Similarity=0.233 Sum_probs=187.5
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++.. . .++|.... .
T Consensus 28 ~aw~~----g~~G~gv~VaViDtGv~~~Hpdl~~~~~----------~-------------------~~~~~~~~----~ 70 (334)
T d1p8ja2 28 EAWAQ----GFTGHGIVVSILDDGIEKNHPDLAGNYD----------P-------------------GASFDVND----Q 70 (334)
T ss_dssp HHHHT----TCSCTTCEEEEEEBCCCTTCTTTGGGBC----------G-------------------GGCEETTT----T
T ss_pred HHHhc----CCCCCCeEEEEEccCCCCCChhHhhccc----------c-------------------CCCccccC----C
Confidence 46765 7899999999999999999999997521 0 11110000 0
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHH-cC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVH-DG 300 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~-~g 300 (817)
.....+.....|..+|||||||||+|....+ ....|+||+++++.+|++... ..+.+.++.++++ .+
T Consensus 71 ~~~~~~~~~~~~~~gHGT~vAgiia~~~~n~--------~~~~g~a~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 138 (334)
T d1p8ja2 71 DPDPQPRYTQMNDNRHGTRCAGEVAAVANNG--------VCGVGVAYNARIGGVRMLDGE----VTDAVEARSLGLNPNH 138 (334)
T ss_dssp BSCCCCCCCTTCTTCHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECSSSC----CCHHHHHHHHTSCTTT
T ss_pred CCccccccccccCccchhhhhhhhhhccccc--------cccccccccccccchhhcccc----ccchHHHHHHHhhhcC
Confidence 0011122334578899999999999975422 135799999999999987542 3355667777765 68
Q ss_pred CcEEEecCCCCCCCCCCccCC----CChHHHHHHHHHHcCceEEEecCCCCCCCCCcc----CCCCcEEEEeeeecCcce
Q 003469 301 VDILSLSVGPNSPPATTKTTF----LNPFDVTLLAAVKAGVFVAQAAGNGGPFPKTLV----SYSPWITTVAAAIDDRRY 372 (817)
Q Consensus 301 ~dVIn~SlG~~~~~~~~~~~~----~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~----~~~~~vitVgA~~~~~~~ 372 (817)
++++|||||............ ...+..++..+..+|+++|+||||++....... ...+.+++|++...
T Consensus 139 ~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~---- 214 (334)
T d1p8ja2 139 IHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ---- 214 (334)
T ss_dssp CCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT----
T ss_pred CcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc----
Confidence 999999999753321110000 112333445567799999999999876543221 12344555544321
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCC-----cEEEeeCCCCCCCCCccCCceEeecCccchhHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGS-----LIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAG 607 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~-----~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 607 (817)
.+..+.||++|+.... ++.+||. .+.+.. .+..|..++|||||||||||
T Consensus 215 -----~g~~~~~s~~~~~~~~-----------~~~~~~~~~~~~~~~~~~----------~~~~~~~~sGTS~AaP~VaG 268 (334)
T d1p8ja2 215 -----FGNVPWYSEACSSTLA-----------TTYSSGNQNEKQIVTTDL----------RQKCTESHTGTSASAPLAAG 268 (334)
T ss_dssp -----TSCCCTTCCBCTTCCE-----------EEECCCSTTSCCEEEEET----------TTEEEEEECSHHHHHHHHHH
T ss_pred -----CCceeeecccCCcccc-----------cccccccccccccccccc----------CCccccCCCCccccchHHHH
Confidence 1234455555554321 3333332 233332 34578999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccC
Q 003469 608 IAALVKQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALD 675 (817)
Q Consensus 608 ~aALl~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 675 (817)
++|||+|++|+|++.|||++|++||++........... .........||+|+||+.+||+
T Consensus 269 ~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~--------~~~~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 269 IIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN--------GVGRKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC--------TTSCEEBTTTBTCBCCHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCcccccc--------CCCcccCCCCcceEeCHHHHHH
Confidence 99999999999999999999999999876543322111 1111233578999999999986
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-38 Score=342.81 Aligned_cols=289 Identities=19% Similarity=0.188 Sum_probs=200.3
Q ss_pred CCCCCCCCCCCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhcc
Q 003469 142 GVWPTGGGFDRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARA 221 (817)
Q Consensus 142 ~~w~~~~~~~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~ 221 (817)
.+|.. +++|+||+|||||||||++||+|.++. +. -+.++|.+.
T Consensus 37 ~aw~~----g~~G~gv~VaViDtGid~~Hp~l~~~~---------~~------------------~~~~~~~~~------ 79 (339)
T d2id4a2 37 DLWYN----NITGAGVVAAIVDDGLDYENEDLKDNF---------CA------------------EGSWDFNDN------ 79 (339)
T ss_dssp HHHHT----TCSCTTCEEEEEESCCCTTSTTTTTTB---------CG------------------GGCEETTTT------
T ss_pred HHHhc----CCCCCCcEEEEECcCcCCCChHHhcCc---------cc------------------ccccccccC------
Confidence 46765 799999999999999999999999761 10 012233221
Q ss_pred CCCCCCCCCCCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHcCC
Q 003469 222 FNPAVDFASPLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHDGV 301 (817)
Q Consensus 222 ~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~g~ 301 (817)
........++++|||||||+|+|..... ..+.||||+|+|+.++++.. ....+++..++.++.+. .
T Consensus 80 ---~~~~~~~~~~~~HGT~vag~iaa~~~~~--------~~~~Gvap~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~ 145 (339)
T d2id4a2 80 ---TNLPKPRLSDDYHGTRCAGEIAAKKGNN--------FCGVGVGYNAKISGIRILSG--DITTEDEAASLIYGLDV-N 145 (339)
T ss_dssp ---BSCCCCCSTTTTHHHHHHHHHHCCSSSS--------SSCCCTTTTSEEEEEECTTS--CCCHHHHHHHTTTTTTT-C
T ss_pred ---CCccCCCcccccccceeeeccccccccc--------ccccccccccccceEEEeec--cccchHHHHHHHHHHhh-C
Confidence 0112234567899999999999875422 23589999999999998753 46677788888887765 5
Q ss_pred cEEEecCCCCCCCCCCccCCCC-----hHHHHHHHHHHcCceEEEecCCCCCCCCCc--cC--CCCcEEEEeeeecCcce
Q 003469 302 DILSLSVGPNSPPATTKTTFLN-----PFDVTLLAAVKAGVFVAQAAGNGGPFPKTL--VS--YSPWITTVAAAIDDRRY 372 (817)
Q Consensus 302 dVIn~SlG~~~~~~~~~~~~~~-----~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~--~~~~vitVgA~~~~~~~ 372 (817)
+|+|+|+|........ ..... ....+...+..+|+++|+||||++...... +. ..+.+++|+++.
T Consensus 146 ~v~~~s~g~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~----- 219 (339)
T d2id4a2 146 DIYSCSWGPADDGRHL-QGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID----- 219 (339)
T ss_dssp SEEEECEESCCSSSCC-BCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC-----
T ss_pred CEEeccCCCCCCcccc-cCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc-----
Confidence 9999999974322111 11111 123344556679999999999987643221 11 123333333321
Q ss_pred eeEEEeCCCcEEEeeecCCCCCCCceEEEEEcccccccccccccCCCCCCCccccccccccccEEEEecccccccCcchH
Q 003469 373 KNHLNLGNGKILAGIGLSPATHGNRTFTLVAANDVLLDSSVMKYSASDCQRPEVLNKNLVEGNILLCGYSFNFVTGTASI 452 (817)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gki~~~~~~~~~~~g~~~~ 452 (817)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCceEEEEeecCCCCCCccCCCCCCCCeEEEcCchhHHHHHHHHhccCCcCCcceeEeeeeeeEecCCCcc
Q 003469 453 KKVSETAKSLGAAGFVLAVENVSPGTKFDPVPVGIPGILITDVTKSMDLVDYYNTSTTRDWTGRVKSFKGTGTIGDGLMP 532 (817)
Q Consensus 453 ~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~p~~~i~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (817)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCccccccCCCCCCCCCCcCCccccCCccccCCCcEEEeeCCCCCCCCCccCCceEeecCccchhHHHHHHHHHH
Q 003469 533 ILHKSAPQVALFSARGPNIKDFSFQDADLLKPDILAPGSLIWAAWSPNGTDEANFVGEGFALISGTSMAAPHIAGIAALV 612 (817)
Q Consensus 533 ~~~~~~~~~a~fSS~Gp~~~~~~~~~~~~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 612 (817)
..+..+.||++|+.. ...++..+||..+.++.. .+..|..++|||||||||||++|||
T Consensus 220 ----~~g~~~~~s~~~~~~---------~~~~~~~~~g~~~~s~~~---------~~~~~~~~sGTS~AtP~vaG~aALv 277 (339)
T d2id4a2 220 ----HKDLHPPYSEGCSAV---------MAVTYSSGSGEYIHSSDI---------NGRCSNSHGGTSAAAPLAAGVYTLL 277 (339)
T ss_dssp ----TTSCCCTTCCCCTTE---------EEEEECSBTTBCEEEECS---------TTCEEEEECSHHHHHHHHHHHHHHH
T ss_pred ----ccccccccccccCcc---------ceeeeeeccccccceecc---------CCCccccCCCCcchHHHHHHHHHHH
Confidence 122566777777765 456789999999988764 3467899999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHhccccccccCCCccccccchhhhhhccccCCCCcccccccCcccccCC
Q 003469 613 KQKHPYWSPAAIKSALMTTTTKLDRASRPLQAQQYSETEAMKLVTATPFDYGSGHVNPRAALDP 676 (817)
Q Consensus 613 ~q~~p~ls~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 676 (817)
+|++|+|++.|||.+|++||++++......... ..........||||+||+.+||+.
T Consensus 278 ~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~-------~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 278 LEANPNLTWRDVQYLSILSAVGLEKNADGDWRD-------SAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp HHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEE-------CSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHhCcccCCCCCccccc-------cCCCCCcCCCccchhhCHHHHHHH
Confidence 999999999999999999999876432211000 011223345799999999999974
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=3.9e-31 Score=288.62 Aligned_cols=164 Identities=23% Similarity=0.262 Sum_probs=109.5
Q ss_pred CCCCCceEEEEecceecCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccCCCceeeeeehhHHHHhhccCCCCCCCCC
Q 003469 151 DRAGEDIVIGFVDSGIYPHHPSFGSHHTDPYGPVPKYRGKCEVDPDTKRSFCNGKIIGAQHFAEAAIAARAFNPAVDFAS 230 (817)
Q Consensus 151 ~~tG~GV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ki~~~~~~~~~~~~~~~~~~~~~~~~ 230 (817)
+++|+||+|||||||||++||||.+. |+.. ........
T Consensus 20 G~tG~Gv~VaViDtGvd~~H~dl~~~----------~~~~--------------------------------~~~~~~~~ 57 (357)
T d1t1ga_ 20 GLDGQGQCIAIIALGGGYDETSLAQY----------FASL--------------------------------GVSAPQVV 57 (357)
T ss_dssp TCCCTTCEEEEEESSCCCCHHHHHHH----------HHHT--------------------------------TCCCCCEE
T ss_pred CCCCCCCEEEEEEcCCCCCcHHHHHH----------Hhhc--------------------------------CCCCCCCc
Confidence 78999999999999999999999853 1000 00000112
Q ss_pred CCCCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHH---HcCCcEEEec
Q 003469 231 PLDGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAV---HDGVDILSLS 307 (817)
Q Consensus 231 ~~D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~---~~g~dVIn~S 307 (817)
+.|.++|+||++|++++...... .....+.||||+|+|+.+|+.... ..++.++++++ +++++|||||
T Consensus 58 ~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~Vin~S 128 (357)
T d1t1ga_ 58 SVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPNTD-----AGFLNAITTAVHDPTHKPSIVSIS 128 (357)
T ss_dssp EEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCSSH-----HHHHHHHHHHHHCTTTCCSEEEEC
T ss_pred eeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEecccCC-----CchHHHHHHHHHhhhcCCeEEecc
Confidence 33567899999988776432110 011136899999999999987542 23455555554 4699999999
Q ss_pred CCCCCCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCCC--------ccCCCCcEEEEeeee
Q 003469 308 VGPNSPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPKT--------LVSYSPWITTVAAAI 367 (817)
Q Consensus 308 lG~~~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~~~~vitVgA~~ 367 (817)
||....... ......+..++..+..+|+++|+|+||+|..... .+...+++++|++..
T Consensus 129 ~G~~~~~~~--~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 129 WGGPEDSWA--PASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp CCEEGGGSC--HHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred cccCcCccc--cchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 997432111 1123456677778888999999999999854322 234577888888764
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=1.2e-29 Score=278.08 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=96.7
Q ss_pred CCCCCCccchhhhccCCCccccccccCccceeeccCCCcEEEEEeeecCCCCCHHHHHHHHHHHHHc-CCcEEEecCCCC
Q 003469 233 DGDGHGSHTAAIAAGNNGIPVRMHGHEFGRASGMAPRARIAVYKALYRLFGGFVADVVAAIDQAVHD-GVDILSLSVGPN 311 (817)
Q Consensus 233 D~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GVAP~A~L~~~kv~~~~~~~~~~di~~ai~~a~~~-g~dVIn~SlG~~ 311 (817)
+..+||||+++++.+.... ..+.||||+|+|+++|++.+.+....++++++|+||+++ +++|||+|||..
T Consensus 66 ~~~~~~~~~~~~~e~~ld~---------~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~ 136 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDLDS---------QSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWC 136 (369)
T ss_dssp TTSCCCBCHHHHHHHHHHH---------HHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEE
T ss_pred CCCCCCCCCCcceeecccc---------ccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeecccccc
Confidence 4678999999998875321 236899999999999999987777888999999999965 799999999974
Q ss_pred CCCCCCccCCCChHHHHHHHHHHcCceEEEecCCCCCCCC-------------CccCCCCcEEEEeeee
Q 003469 312 SPPATTKTTFLNPFDVTLLAAVKAGVFVAQAAGNGGPFPK-------------TLVSYSPWITTVAAAI 367 (817)
Q Consensus 312 ~~~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-------------~~~~~~~~vitVgA~~ 367 (817)
...... ....+.++++++++..+|++||+||||+|.... ..++..+++++|+++.
T Consensus 137 ~~~~~~-~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 137 EADANA-DGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HHHHHH-TTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred ccCCCc-chHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 321110 123456777888899999999999999986432 2245678999999864
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.44 E-value=3.6e-07 Score=72.08 Aligned_cols=43 Identities=23% Similarity=0.279 Sum_probs=39.2
Q ss_pred CceEEEEeccccceEEEEcCHHHHHHHHcCCCceEEEccceecc
Q 003469 85 TYKKLYSYKHLINGFAVHITPDQAEILQRAPGVKSVERDWKVRR 128 (817)
Q Consensus 85 ~~~~~~~y~~~~ng~sv~~~~~~~~~L~~~p~V~~V~~~~~~~~ 128 (817)
+.++.++|+ .||||++++++++++.|+++|+|.+||+|+.+++
T Consensus 28 gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 28 GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 567888897 7999999999999999999999999999998764
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.38 E-value=5.6e-07 Score=71.18 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=31.3
Q ss_pred EEEEec-cccceEEEEcCHHHHHHHHcCCC--ceEEEccc
Q 003469 88 KLYSYK-HLINGFAVHITPDQAEILQRAPG--VKSVERDW 124 (817)
Q Consensus 88 ~~~~y~-~~~ng~sv~~~~~~~~~L~~~p~--V~~V~~~~ 124 (817)
+.+.|. ..||||+++++++.++.|+++|. |.+||+|.
T Consensus 32 ~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 32 ITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred eEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 344555 58999999999999999999665 99999985
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.92 E-value=0.028 Score=46.65 Aligned_cols=78 Identities=22% Similarity=0.178 Sum_probs=54.1
Q ss_pred CCCcEEEeeecceEEEEEEEEEcCCC-c-eEEEEEEcCCCcEEEEecCeEEEcCCCEEEEEEEEEEecCCC-ceEEEEEE
Q 003469 721 NTPSITVAHLVKTQVVTRTVTNVAEE-E-TYSMSARMQPAIAIEVNPPAMTLKPGASRKFTVTLTVRSVTG-TYSFGEIC 797 (817)
Q Consensus 721 n~ps~~~~~~~~~~~~~~tv~n~~~~-~-ty~~~~~~~~~~~v~~~~~~~tv~~g~~~~~~v~~~~~~~~~-~~~~G~i~ 797 (817)
..|++.+.- ....+++.+|+|.+.. . .-++....|.|=++ .+..+.|+||+++++++++++|.... ..|.=.++
T Consensus 7 t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v--~~~~~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~ 83 (103)
T d1w8oa1 7 TIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQV--QGSVEPLMPGRQAKGQVTITVPAGTTPGRYRVGAT 83 (103)
T ss_dssp ECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEE--EEEECCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred cCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccc--cCcceeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence 356666532 3456688899999988 3 35677788888554 45667799999999999999987543 33444455
Q ss_pred EEeC
Q 003469 798 MKGS 801 (817)
Q Consensus 798 ~~~~ 801 (817)
++.+
T Consensus 84 a~~~ 87 (103)
T d1w8oa1 84 LRTS 87 (103)
T ss_dssp EEET
T ss_pred EEeC
Confidence 5544
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.077 Score=48.81 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=34.7
Q ss_pred ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecCCC
Q 003469 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVENVS 475 (817)
Q Consensus 430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~~~ 475 (817)
.+++|||+|+.+ |.+.+.+|+.+|++.||.|+|+|.+...
T Consensus 59 ~~v~GkI~l~r~------G~~~~~~Kv~~A~~~GA~gviiysDp~d 98 (193)
T d1de4c2 59 TPVNGSIVIVRA------GKITFAEKVANAESLNAIGVLIYMDQTK 98 (193)
T ss_dssp SCCTTSEEEEES------CSSCHHHHHHHHHHTTCCCEEEECCTTT
T ss_pred cccCceEEEEeC------CCCCHHHHHHHHHHcCceEEEEecCccc
Confidence 468999999986 5677899999999999999999987543
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.15 Score=48.42 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=33.5
Q ss_pred ccccccEEEEecccccccCcchHHHHHHHHHhcCceEEEEeecC
Q 003469 430 NLVEGNILLCGYSFNFVTGTASIKKVSETAKSLGAAGFVLAVEN 473 (817)
Q Consensus 430 ~~~~gki~~~~~~~~~~~g~~~~~~~~~~~~~~Ga~~~i~~~~~ 473 (817)
-+++|||+|+.+ |...+.+|+.+|++.||.|+|+|++.
T Consensus 77 i~~~gkIvl~ry------G~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 77 INCSGKIVIARY------GKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCTTCEEEEEC------CSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CcccceEEEEeC------CCCchhHHHHHHHHcCceEEEEecCh
Confidence 478999999986 56678999999999999999999863
|